BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11689
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%)
Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
+GGL +++ +E P K+ FE L I +PKG++LYGPPG KT L R +A H+ +
Sbjct: 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209
Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ S A+L Y+GE + V +LF AR AP+I+F+DEI+
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 65/103 (63%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL+ V+ +++ V++P ++ +F + + KG+L YGPPGC KT L + +A
Sbjct: 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
++ +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 538 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT + R +A +
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ ++ S GE+E N+ + F A APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 65/103 (63%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL+ V+ +++ V++P ++ +F + + KG+L YGPPGC KT L + +A
Sbjct: 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
++ +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 538 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT + R +A +
Sbjct: 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ ++ S GE+E N+ + F A APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 65/103 (63%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL+ V+ +++ V++P ++ +F + + KG+L YGPPGC KT L + +A
Sbjct: 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 75
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
++ +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 76 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 118
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 62/103 (60%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++G L+ +R + + P + +F+ L + P G+LL GPPGC KT L + +A S
Sbjct: 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
++ +L + YVGE+E+ V Q+F RA+ +AP ++F DE++
Sbjct: 71 NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVD 113
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL+ + + VE P K+ FE++ I PKGILLYGPPG KT L + +A +
Sbjct: 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ ++L ++GE V +F A+ AP+I+FIDEI+
Sbjct: 78 TFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEID 120
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++ G++ +A +++ V WP F L P PKGILL+GPPG KT + + +A+ S
Sbjct: 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIASQSGA 143
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
+ SA+ L S +VGE E+ V LF AR PA++FIDEI+ + + ++
Sbjct: 144 TFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS---QRGDGEHESS 200
Query: 265 PRIPRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISR 309
RI +T + A T+++ RI R Q D A + R+ +
Sbjct: 201 RRI-KTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVK 244
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL + + + VE P A +E++ I P+G+LLYGPPG KT LV+ +A +
Sbjct: 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
+ + ++ Y+GE + V +F AR AP+I+FIDE++ + QT + +
Sbjct: 233 AFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREV 292
Query: 265 PRI 267
RI
Sbjct: 293 QRI 295
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 145 ELGGL-KGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203
++GGL K + L+E V P K A +F+ + I PKG L+YGPPG KT L R AA +
Sbjct: 182 DVGGLDKQIEELVEAIV-LPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240
Query: 204 YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
L +A QL Y+GE + V F A+ AP I+FIDE++
Sbjct: 241 ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 146 LGGL-KGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
+GGL + +R L E +E P K F+R+ I PKG+LLYGPPG KT L + +AA
Sbjct: 183 IGGLTEQIRELRE-VIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTA 259
+ + A+ + Y+GE+ + + ++F A+ P I+F+DE++ + E T+
Sbjct: 242 NFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT + R +A +
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ ++ S GE+E N+ + F A APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT + R +A +
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ ++ S GE+E N+ + F A APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT + R +A +
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ ++ S GE+E N+ + F A APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT + R +A +
Sbjct: 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ ++ S GE+E N+ + F A APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++ GL+G + +++ V P K+ F+ P GILLYGPPG K+ L + +A +
Sbjct: 28 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-SGILLYGPPGTGKSYLAKAVATEANS 86
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ S++ L S ++GE+E+ V QLF AR P+I+FIDE++
Sbjct: 87 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVD 129
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++ GL+G + +++ V P K+ F+ P GILLYGPPG K+ L + +A +
Sbjct: 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-SGILLYGPPGTGKSYLAKAVATEANS 110
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ S++ L S ++GE+E+ V QLF AR P+I+FID+++
Sbjct: 111 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 153
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++ GL+G + +++ V P K+ F+ P GILLYGPPG K+ L + +A +
Sbjct: 37 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-SGILLYGPPGTGKSYLAKAVATEANS 95
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ S++ L S ++GE+E+ V QLF AR P+I+FID+++
Sbjct: 96 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 138
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++ GL+G + +++ V P K+ F+ P GILLYGPPG K+ L + +A +
Sbjct: 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-SGILLYGPPGTGKSYLAKAVATEANS 77
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ S++ L S ++GE+E+ V QLF AR P+I+FID+++
Sbjct: 78 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 120
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 27/206 (13%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL+ ++++VE P + +E + I PKG++LYG PG KT L + +A +
Sbjct: 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
L ++L Y+G+ + Q+F A AP+I+FIDEI D
Sbjct: 243 TFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEI-------------DAIGT 289
Query: 265 PRIPRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGYREKTADTANK 324
R +GG RE IQRT E Q + + + +T D
Sbjct: 290 KRYDSNSGGERE----------IQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD---- 335
Query: 325 PRIPRTNRGYREYSAQNANTANKPRI 350
P + R R R+ +N + + K +I
Sbjct: 336 PALIRPGRIDRKILFENPDLSTKKKI 361
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 52/103 (50%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG K + + VE P F L I PKGILLYGPPG KT R +A +
Sbjct: 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ ++L YVGE + V +LF AR I+F DEI+
Sbjct: 270 TFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 312
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++ G + +++ V P F L P +G+LL+GPPG KT L + +AA S
Sbjct: 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPA-RGLLLFGPPGNGKTMLAKAVAAESNA 174
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
SAA L S YVGE E+ V LF AR P+I+FID+++ CE RE D +++
Sbjct: 175 TFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLL-CERREGEHDASRR 233
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++ GL+G + +++ V P K+ F P +GILL+GPPG K+ L + +A +
Sbjct: 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVATEANN 193
Query: 205 R-VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ S++ L S ++GE+E+ V LF AR P+I+FIDEI+
Sbjct: 194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEID 237
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV- 203
++ GL+G + +++ V P K+ F P +GILL+GPPG K+ L + +A +
Sbjct: 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVATEANN 71
Query: 204 YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263
+ S++ L S ++GE+E+ V LF AR P+I+FIDEI+ C R + A
Sbjct: 72 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL--CGSRSENESEAA 129
Query: 264 K 264
+
Sbjct: 130 R 130
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAP 238
KG+LL+GPPG KT L R +A L SAA L S YVG+ E+ V LF AR P
Sbjct: 55 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQP 114
Query: 239 AILFIDEIE 247
+I+FIDE++
Sbjct: 115 SIIFIDEVD 123
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 165 KYARE---FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221
+Y RE F++L PKG+L+ GPPG KT L + +A + S + +VG
Sbjct: 29 EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 88
Query: 222 AEQNVTQLFHRARLAAPAILFIDEIE 247
V +F +A+ AAP I+FIDEI+
Sbjct: 89 GASRVRDMFEQAKKAAPCIIFIDEID 114
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + +++ VE+ K +F R+ PKGILL GPPG KT L R +A +
Sbjct: 17 DVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV 75
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
S + +VG V LF +A+ AP I+FIDEI+
Sbjct: 76 PFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEID 118
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 160 VEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219
VE+ K F + PKG+LL GPPG KT L R +A + + AS + +V
Sbjct: 56 VEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114
Query: 220 GEAEQNVTQLFHRARLAAPAILFIDEIE 247
G V LF A+ AP I+FIDEI+
Sbjct: 115 GVGAARVRDLFETAKRHAPCIVFIDEID 142
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 159 TVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218
VE+ K F + PKG+LL GPPG KT L R +A + + AS + +
Sbjct: 31 IVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89
Query: 219 VGEAEQNVTQLFHRARLAAPAILFIDEIE 247
VG V LF A+ AP I+FIDEI+
Sbjct: 90 VGVGAARVRDLFETAKRHAPCIVFIDEID 118
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%)
Query: 170 FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
F + PKG+LL GPPG KT L R +A + + AS + +VG V L
Sbjct: 65 FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 124
Query: 230 FHRARLAAPAILFIDEIE 247
F A+ AP I+FIDEI+
Sbjct: 125 FETAKRHAPCIVFIDEID 142
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%)
Query: 170 FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
F + PKG+LL GPPG KT L R +A + + AS + +VG V L
Sbjct: 56 FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 115
Query: 230 FHRARLAAPAILFIDEIE 247
F A+ AP I+FIDEI+
Sbjct: 116 FETAKRHAPCIVFIDEID 133
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + +++ VE+ K +F R+ PKGILL GPPG T L R +A +
Sbjct: 17 DVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANV 75
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
S + +VG V LF +A+ AP I+FIDEI+
Sbjct: 76 PFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEID 118
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 164 FKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAE 223
KY + L PKG+LL GPPG KT L + +A + + + +VG
Sbjct: 30 LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGA 89
Query: 224 QNVTQLFHRARLAAPAILFIDEIE 247
V LF A+ AP+I+FIDEI+
Sbjct: 90 SRVRDLFETAKKQAPSIIFIDEID 113
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%)
Query: 170 FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
F +L PKG LL GPPGC KT L + +A + LA + A+ G V L
Sbjct: 31 FLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSL 90
Query: 230 FHRARLAAPAILFIDEIE 247
F AR AP I++IDEI+
Sbjct: 91 FKEARARAPCIVYIDEID 108
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVGEAEQNV-TQLFHRARL--- 235
ILL GP G KT + +TLA H + + A L + YVGE +N+ T+L +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 236 -AAPAILFIDEIERT 249
A I+FIDEI++
Sbjct: 135 KAQKGIVFIDEIDKI 149
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 181 ILLYGPPGCAKTSLVRTLA-AHSVYRVLAASAAQLYSPYVGEAEQNVTQLF-----HRAR 234
ILL GP G KT L TLA V +A + + YVGE +N+ Q + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 235 LAAPAILFIDEIER 248
A I++ID+I++
Sbjct: 114 KAQRGIVYIDQIDK 127
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 181 ILLYGPPGCAKTSLVRTLA-AHSVYRVLAASAAQLYSPYVGEAEQNVTQLF-----HRAR 234
ILL GP G KT L TLA V +A + + YVGE +N+ Q + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 235 LAAPAILFIDEIER 248
A I++ID+I++
Sbjct: 114 KAQRGIVYIDQIDK 127
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP-YVG-EAEQNVTQLFHRARL 235
PK IL+ GP G KT + R LA + + A + YVG E + + L A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 236 AAPA-----ILFIDEIERTYNCEYREQTADNAKKPRIPR 269
A A I+FIDEI++ C+ E + + + + R
Sbjct: 110 AIDAVEQNGIVFIDEIDKI--CKKGEYSGADVSREGVQR 146
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 182 LLYGPPGCAKTSLVRTLAAHSVY----------RVLAASAAQLY--SPYVGEAEQNVTQL 229
+L G PG KT++V LA + RVLA L + Y GE E+ + +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 230 FHR-ARLAAPAILFIDEIERTYNCEYREQTAD--NAKKPRIPR 269
+ A+ ILFIDE+ + D N KP + R
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR 149
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 24/131 (18%)
Query: 182 LLYGPPGCAKTSLVRTLAAHSV----------YRVLAASAAQLY--SPYVGEAEQNVTQL 229
+L G PG KT++V LA V R+++ L + Y GE E+ + +
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 230 FHR-ARLAAPAILFIDEIERTYNCEYREQTAD--NAKKPRIPR---------TNGGYREQ 277
+ ILFIDE+ E D N KP + R T YRE
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREI 177
Query: 278 TADTANKPRIQ 288
D A + R Q
Sbjct: 178 EKDPALERRFQ 188
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 24/131 (18%)
Query: 182 LLYGPPGCAKTSLVRTLAAHSV----------YRVLAASAAQLY--SPYVGEAEQNVTQL 229
+L G PG KT++V LA V R+++ L + Y GE E+ + +
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 230 FHR-ARLAAPAILFIDEIERTYNCEYREQTAD--NAKKPRIPR---------TNGGYREQ 277
+ ILFIDE+ E D N KP + R T YRE
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREI 314
Query: 278 TADTANKPRIQ 288
D A + R Q
Sbjct: 315 EKDPALERRFQ 325
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 28/95 (29%)
Query: 177 KPKGILLY-GPPGCAKTSLVRTLAA--------------------HSVYRVLAASAAQLY 215
+P G L+ GP G KT L +TLAA H+V R++ A
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPG--- 642
Query: 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250
YVG E QL R +++ DEIE+ +
Sbjct: 643 --YVGYEEGG--QLTEAVRRRPYSVILFDEIEKAH 673
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL+GPPG KT+L AH + L + P + E ++ + + L I
Sbjct: 41 LLLFGPPGLGKTTL-----AHVIAHELGVNLRVTSGPAI-EKPGDLAAILANS-LEEGDI 93
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 94 LFIDEIHR 101
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL+GPPG KT+L AH + L + P + E ++ + + L I
Sbjct: 41 LLLFGPPGLGKTTL-----AHVIAHELGVNLRVTSGPAI-EKPGDLAAILANS-LEEGDI 93
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 94 LFIDEIHR 101
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL+GPPG KT+L AH + L + P + E ++ + + L I
Sbjct: 41 LLLFGPPGLGKTTL-----AHVIAHELGVNLRVTSGPAI-EKPGDLAAILANS-LEEGDI 93
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 94 LFIDEIHR 101
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPA- 239
++L+GPPG KT+L +A ++ V SA V + + + RAR A
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 240 ---ILFIDEIER 248
ILF+DE+ R
Sbjct: 106 RRTILFVDEVHR 117
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY-VGEAEQNVTQLFHRARLA 236
PK I L GP KT+L L +++ +A +Y +G A+ N +L LA
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEEL-----LA 64
Query: 237 APA-ILFIDEIERTYN-CEYR----EQTADNAKKPRIPRTNGG 273
AP +L I + + Y+ ++R + AD RIP GG
Sbjct: 65 APHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGG 107
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL GPPG KT+L +A+ + S L G+ +T L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL-ERGD-----V 105
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 106 LFIDEIHR 113
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL GPPG KT+L +A+ + S L G+ +T L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL-ERGD-----V 105
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 106 LFIDEIHR 113
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL GPPG KT+L +A+ + S L G+ +T L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL-ERGD-----V 105
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 106 LFIDEIHR 113
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL GPPG KT+L +A+ + S L G+ +T L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL-ERGD-----V 105
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 106 LFIDEIHR 113
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL GPPG KT+L +A+ + S L G+ +T L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL-ERGD-----V 105
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 106 LFIDEIHR 113
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY-VGEAEQNVTQLFHRARLA 236
PK I L GP KT+L L +++ +A +Y +G A+ N +L LA
Sbjct: 10 PKAIFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEEL-----LA 64
Query: 237 APA-ILFIDEIERTYN-CEYR----EQTADNAKKPRIPRTNGG 273
AP +L I + + Y+ ++R + AD RIP GG
Sbjct: 65 APHRLLDIRDPSQAYSAADFRRDALAEXADITAAGRIPLLVGG 107
>pdb|1GKA|B Chain B, The Molecular Basis Of The Coloration Mechanism In Lobster
Shell. Beta-Crustacyanin At 3.2 A Resolution
Length = 174
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 235 LAAPAILFIDEIERTYNCEYREQTADNAKK------PRIPRTNGGYREQTADTANKPRIQ 288
AAP + I+ TY+C Y T DN K R P+T+G E+TA NK ++
Sbjct: 99 FAAPYEV-IETDYETYSCVYSCITTDNYKSEFAFVFSRTPQTSGPAVEKTAAVFNKNGVE 157
Query: 289 RTKREYREQTADTAHK 304
+K TA+ ++
Sbjct: 158 FSKFVPVSHTAECVYR 173
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 178 PKGILLYGPPGCAKTSLVRTLA 199
PK IL+ GP G KT + R LA
Sbjct: 50 PKNILMIGPTGVGKTEIARRLA 71
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 178 PKGILLYGPPGCAKTSLVRTLA 199
PK IL+ GP G KT + R LA
Sbjct: 49 PKNILMIGPTGVGKTEIARRLA 70
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 178 PKGILLYGPPGCAKTSLVRTLA 199
PK IL+ GP G KT + R LA
Sbjct: 56 PKNILMIGPTGVGKTEIARRLA 77
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 178 PKGILLYGPPGCAKTSLVRTLA 199
PK IL+ GP G KT + R LA
Sbjct: 50 PKNILMIGPTGVGKTEIARRLA 71
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL GPPG +T+L +A+ + S L G+ +T L R +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL-ERGD-----V 105
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 106 LFIDEIHR 113
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 182 LLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS 216
+LYGPPG KT+ +A Y +L +A+ + S
Sbjct: 81 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 28/95 (29%)
Query: 177 KPKGILLY-GPPGCAKTSLVRTLAA--------------------HSVYRVLAASAAQLY 215
+P G L+ GP G KT L +TLAA H+V R++ A
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEKHAVSRLIGAPPG--- 101
Query: 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250
YVG E QL R +++ D IE+ +
Sbjct: 102 --YVGYEEGG--QLTEAVRRRPYSVILFDAIEKAH 132
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 28/95 (29%)
Query: 177 KPKGILLY-GPPGCAKTSLVRTLAA--------------------HSVYRVLAASAAQLY 215
+P G L+ GP G KT L +TLAA H+V R++ A
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPG--- 98
Query: 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250
YVG E QL R +++ D IE+ +
Sbjct: 99 --YVGYEEGG--QLTEAVRRRPYSVILFDAIEKAH 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,019,743
Number of Sequences: 62578
Number of extensions: 315503
Number of successful extensions: 826
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 69
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)