Query psy11689
Match_columns 390
No_of_seqs 348 out of 4003
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 16:21:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 2.8E-58 6.1E-63 454.4 5.3 349 12-387 330-784 (802)
2 KOG0730|consensus 100.0 5.8E-55 1.3E-59 436.4 5.6 349 10-388 319-690 (693)
3 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-43 2.9E-48 333.4 13.5 237 139-379 146-399 (406)
4 KOG0736|consensus 100.0 1.1E-40 2.4E-45 337.0 9.9 335 8-372 530-932 (953)
5 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-40 2.4E-45 356.0 7.1 352 9-387 312-725 (733)
6 KOG0741|consensus 100.0 6.7E-40 1.4E-44 319.7 6.8 269 3-291 361-657 (744)
7 KOG0735|consensus 100.0 8.7E-40 1.9E-44 327.8 4.7 335 10-364 529-897 (952)
8 COG0464 SpoVK ATPases of the A 100.0 5.3E-38 1.2E-42 322.2 10.9 333 12-371 119-482 (494)
9 KOG0726|consensus 100.0 7E-34 1.5E-38 260.5 11.3 214 138-376 179-430 (440)
10 KOG0733|consensus 100.0 5.8E-34 1.3E-38 282.3 11.0 212 140-355 186-414 (802)
11 KOG0727|consensus 100.0 1.1E-33 2.4E-38 254.7 11.4 213 127-373 147-397 (408)
12 KOG0652|consensus 100.0 2.6E-33 5.7E-38 253.4 12.1 230 139-372 166-412 (424)
13 KOG0731|consensus 100.0 9.5E-34 2.1E-38 291.9 9.8 241 138-381 305-562 (774)
14 KOG0734|consensus 100.0 2.1E-33 4.7E-38 274.5 11.2 236 140-380 300-549 (752)
15 KOG0738|consensus 100.0 6.8E-33 1.5E-37 262.7 9.8 243 117-372 194-469 (491)
16 KOG0729|consensus 100.0 9.4E-32 2E-36 244.0 11.3 215 139-378 172-424 (435)
17 KOG0728|consensus 100.0 7.4E-32 1.6E-36 242.7 10.4 226 143-372 146-388 (404)
18 COG0465 HflB ATP-dependent Zn 100.0 2.9E-31 6.4E-36 269.3 10.9 254 114-381 129-399 (596)
19 KOG0739|consensus 100.0 2.4E-31 5.2E-36 244.5 9.2 221 123-355 121-353 (439)
20 PTZ00454 26S protease regulato 100.0 6.9E-31 1.5E-35 260.4 13.0 238 127-376 137-390 (398)
21 KOG0737|consensus 100.0 1.6E-29 3.4E-34 239.6 9.9 216 127-355 84-314 (386)
22 PRK03992 proteasome-activating 100.0 4.6E-29 1E-33 248.0 12.7 239 127-377 123-377 (389)
23 COG1223 Predicted ATPase (AAA+ 100.0 5.5E-29 1.2E-33 225.2 11.0 225 139-371 116-354 (368)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 3.9E-29 8.4E-34 253.0 10.3 307 50-371 136-462 (489)
25 PTZ00361 26 proteosome regulat 100.0 2.4E-28 5.3E-33 243.8 12.3 234 139-375 178-427 (438)
26 TIGR01241 FtsH_fam ATP-depende 99.9 6.9E-28 1.5E-32 247.1 12.1 253 116-381 36-304 (495)
27 KOG0651|consensus 99.9 2.8E-28 6E-33 225.6 7.3 232 139-374 127-375 (388)
28 CHL00176 ftsH cell division pr 99.9 3.3E-27 7.2E-32 245.8 12.9 236 141-381 180-432 (638)
29 TIGR01242 26Sp45 26S proteasom 99.9 6.9E-27 1.5E-31 231.0 11.2 230 128-371 115-362 (364)
30 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.2E-26 4.7E-31 252.4 10.1 209 169-379 1621-1884(2281)
31 KOG0740|consensus 99.9 1.2E-26 2.6E-31 227.2 6.0 224 120-355 138-374 (428)
32 KOG0730|consensus 99.9 1.2E-24 2.6E-29 219.0 10.0 220 144-371 184-415 (693)
33 PRK10733 hflB ATP-dependent me 99.9 2.1E-24 4.6E-29 226.8 10.3 231 145-380 153-400 (644)
34 TIGR03689 pup_AAA proteasome A 99.9 4.6E-24 1E-28 216.0 10.6 234 126-370 173-476 (512)
35 KOG0732|consensus 99.9 4E-24 8.7E-29 226.2 9.5 219 141-362 262-499 (1080)
36 KOG0741|consensus 99.9 2.7E-24 5.8E-29 210.8 5.2 234 145-380 222-500 (744)
37 TIGR01243 CDC48 AAA family ATP 99.9 3.8E-23 8.2E-28 221.3 12.1 211 141-355 175-399 (733)
38 PLN00020 ribulose bisphosphate 99.8 6.9E-21 1.5E-25 182.8 9.5 225 143-375 114-370 (413)
39 COG1222 RPT1 ATP-dependent 26S 99.6 8.2E-17 1.8E-21 152.7 0.7 86 4-104 283-374 (406)
40 KOG0732|consensus 99.6 5.6E-16 1.2E-20 164.9 3.6 232 7-252 402-668 (1080)
41 PF00004 AAA: ATPase family as 99.5 2.5E-15 5.3E-20 126.1 2.2 73 181-253 1-74 (132)
42 KOG0742|consensus 99.5 5.2E-14 1.1E-18 135.3 9.0 114 139-258 350-464 (630)
43 CHL00181 cbbX CbbX; Provisiona 99.5 2.9E-13 6.2E-18 129.4 13.5 104 145-252 24-137 (287)
44 TIGR02881 spore_V_K stage V sp 99.4 3.7E-13 8.1E-18 127.1 10.4 105 143-251 5-119 (261)
45 TIGR02880 cbbX_cfxQ probable R 99.4 7.2E-13 1.6E-17 126.6 12.2 103 145-251 23-135 (284)
46 KOG0735|consensus 99.4 2.5E-13 5.3E-18 138.3 7.0 189 175-369 428-645 (952)
47 KOG0736|consensus 99.4 8.6E-13 1.9E-17 135.5 6.4 192 176-370 429-651 (953)
48 KOG0743|consensus 99.3 1.3E-12 2.9E-17 128.0 6.7 107 140-254 197-303 (457)
49 PRK00080 ruvB Holliday junctio 99.3 3.4E-11 7.4E-16 117.6 11.3 217 133-369 14-247 (328)
50 KOG0728|consensus 99.3 1.3E-12 2.8E-17 118.7 1.1 86 3-103 278-369 (404)
51 PF05496 RuvB_N: Holliday junc 99.2 2.6E-11 5.6E-16 110.0 8.7 108 140-264 20-127 (233)
52 TIGR02639 ClpA ATP-dependent C 99.2 4.3E-11 9.2E-16 128.5 12.0 102 139-253 177-290 (731)
53 COG0464 SpoVK ATPases of the A 99.2 3.6E-11 7.7E-16 123.8 10.4 202 162-372 2-226 (494)
54 PRK04195 replication factor C 99.2 1.1E-10 2.5E-15 119.6 12.0 105 132-251 2-112 (482)
55 TIGR00635 ruvB Holliday juncti 99.2 1.2E-10 2.5E-15 112.4 10.4 209 143-371 3-228 (305)
56 KOG0744|consensus 99.2 7.3E-12 1.6E-16 117.6 1.7 110 145-254 143-267 (423)
57 PRK11034 clpA ATP-dependent Cl 99.2 2.7E-11 5.8E-16 129.2 6.0 100 145-250 459-570 (758)
58 KOG0734|consensus 99.1 9.1E-12 2E-16 123.5 -0.2 85 5-104 433-523 (752)
59 COG2256 MGS1 ATPase related to 99.1 3.2E-10 6.9E-15 109.8 10.1 67 177-250 47-117 (436)
60 COG2274 SunT ABC-type bacterio 99.1 3E-10 6.5E-15 120.3 10.2 114 172-285 493-677 (709)
61 COG1126 GlnQ ABC-type polar am 99.1 4.5E-10 9.8E-15 100.6 9.7 58 222-279 139-199 (240)
62 KOG0652|consensus 99.1 4.3E-11 9.4E-16 109.5 2.8 81 9-104 308-394 (424)
63 KOG0729|consensus 99.1 3.2E-11 7E-16 110.6 1.9 85 4-104 309-400 (435)
64 COG2255 RuvB Holliday junction 99.1 1.3E-09 2.8E-14 101.2 11.5 208 142-370 24-249 (332)
65 COG1116 TauB ABC-type nitrate/ 99.1 7.9E-10 1.7E-14 101.4 9.8 105 172-276 23-191 (248)
66 CHL00206 ycf2 Ycf2; Provisiona 99.1 4.1E-11 8.9E-16 133.7 1.4 82 9-105 1770-1860(2281)
67 COG0465 HflB ATP-dependent Zn 99.0 8E-11 1.7E-15 120.7 3.0 80 11-106 288-374 (596)
68 KOG0058|consensus 99.0 7E-10 1.5E-14 114.5 9.8 113 172-284 488-671 (716)
69 TIGR02639 ClpA ATP-dependent C 99.0 4E-10 8.6E-15 121.1 8.4 222 10-262 310-577 (731)
70 PRK11034 clpA ATP-dependent Cl 99.0 3.2E-09 6.9E-14 113.5 14.2 101 140-253 182-294 (758)
71 PRK05342 clpX ATP-dependent pr 99.0 8.7E-10 1.9E-14 110.2 8.8 108 145-252 72-188 (412)
72 PRK12402 replication factor C 99.0 2.6E-09 5.7E-14 104.2 11.6 69 133-214 4-77 (337)
73 TIGR02928 orc1/cdc6 family rep 99.0 2.3E-09 5E-14 106.0 11.2 211 144-369 15-271 (365)
74 smart00382 AAA ATPases associa 99.0 1.8E-09 4E-14 89.9 8.9 80 178-257 2-98 (148)
75 CHL00095 clpC Clp protease ATP 99.0 2.3E-09 5E-14 116.6 11.7 100 141-253 176-287 (821)
76 KOG0727|consensus 99.0 1.1E-10 2.5E-15 106.3 1.0 87 4-106 287-380 (408)
77 PRK14088 dnaA chromosomal repl 99.0 2.4E-09 5.2E-14 108.4 10.7 187 178-369 130-329 (440)
78 PRK00411 cdc6 cell division co 99.0 5E-09 1.1E-13 104.7 12.5 217 145-372 31-282 (394)
79 PRK00149 dnaA chromosomal repl 99.0 2.1E-09 4.5E-14 109.5 9.7 187 178-370 148-347 (450)
80 PLN03025 replication factor C 99.0 8.6E-09 1.9E-13 100.3 13.6 103 133-251 2-113 (319)
81 TIGR00763 lon ATP-dependent pr 99.0 1E-09 2.2E-14 118.6 7.6 100 145-252 321-429 (775)
82 COG1136 SalX ABC-type antimicr 99.0 4.7E-09 1E-13 95.9 10.7 64 222-285 145-212 (226)
83 PRK06645 DNA polymerase III su 99.0 7.9E-09 1.7E-13 105.8 13.3 215 131-368 8-252 (507)
84 PRK14960 DNA polymerase III su 99.0 7.4E-09 1.6E-13 107.4 13.2 115 137-264 8-144 (702)
85 PTZ00454 26S protease regulato 99.0 1.2E-10 2.7E-15 115.9 0.1 82 8-104 281-368 (398)
86 TIGR00362 DnaA chromosomal rep 98.9 3.3E-09 7.1E-14 106.6 10.1 186 178-369 136-334 (405)
87 PRK10865 protein disaggregatio 98.9 3E-09 6.6E-14 115.7 10.5 101 140-253 174-287 (857)
88 COG4178 ABC-type uncharacteriz 98.9 3.3E-09 7.2E-14 108.9 9.9 104 172-276 413-574 (604)
89 COG1117 PstB ABC-type phosphat 98.9 6.8E-09 1.5E-13 92.9 10.2 83 222-308 152-236 (253)
90 PRK13342 recombination factor 98.9 1.1E-08 2.3E-13 103.2 12.9 96 136-251 4-106 (413)
91 PRK14962 DNA polymerase III su 98.9 6.1E-09 1.3E-13 106.0 11.1 59 134-204 4-62 (472)
92 KOG0731|consensus 98.9 2.8E-10 6.1E-15 118.9 1.4 85 4-104 443-535 (774)
93 PHA02544 44 clamp loader, smal 98.9 9.4E-09 2E-13 99.7 11.9 108 131-253 8-116 (316)
94 TIGR02902 spore_lonB ATP-depen 98.9 1.9E-09 4E-14 111.7 7.2 223 131-371 52-331 (531)
95 TIGR03796 NHPM_micro_ABC1 NHPM 98.9 5.8E-09 1.3E-13 112.1 11.2 62 223-284 619-680 (710)
96 PRK12323 DNA polymerase III su 98.9 1.1E-08 2.5E-13 105.8 12.7 130 134-276 6-164 (700)
97 TIGR00382 clpX endopeptidase C 98.9 3.3E-09 7.1E-14 105.7 8.3 108 145-252 78-196 (413)
98 PRK14956 DNA polymerase III su 98.9 1.2E-08 2.6E-13 102.9 12.2 120 132-264 6-147 (484)
99 TIGR03797 NHPM_micro_ABC2 NHPM 98.9 7.3E-09 1.6E-13 110.9 11.2 63 222-284 591-653 (686)
100 PRK14961 DNA polymerase III su 98.9 3E-08 6.4E-13 98.2 14.5 58 135-204 7-64 (363)
101 KOG0055|consensus 98.9 5.5E-09 1.2E-13 113.8 10.0 114 172-285 1010-1194(1228)
102 COG1124 DppF ABC-type dipeptid 98.9 7.2E-09 1.6E-13 94.6 9.1 59 223-281 145-207 (252)
103 PRK14086 dnaA chromosomal repl 98.9 9.7E-09 2.1E-13 106.2 11.1 183 179-367 315-510 (617)
104 TIGR03346 chaperone_ClpB ATP-d 98.9 6.7E-09 1.4E-13 113.4 10.4 102 139-253 168-282 (852)
105 KOG0055|consensus 98.9 6.5E-09 1.4E-13 113.2 9.9 113 172-284 373-556 (1228)
106 KOG0737|consensus 98.9 4.9E-10 1.1E-14 107.4 1.1 75 12-101 232-310 (386)
107 PRK13341 recombination factor 98.9 1.7E-08 3.7E-13 107.4 12.7 99 133-251 17-123 (725)
108 PRK14958 DNA polymerase III su 98.9 2.5E-08 5.4E-13 102.6 13.5 118 134-264 6-145 (509)
109 KOG0989|consensus 98.9 4.4E-09 9.5E-14 98.6 7.1 104 132-251 24-143 (346)
110 COG3842 PotA ABC-type spermidi 98.9 7.8E-09 1.7E-13 100.5 9.0 110 172-281 25-202 (352)
111 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 1.7E-08 3.6E-13 86.7 10.1 107 172-280 20-131 (144)
112 PRK07003 DNA polymerase III su 98.9 1.2E-08 2.5E-13 107.1 10.6 118 134-264 6-145 (830)
113 PRK11174 cysteine/glutathione 98.9 1.1E-08 2.5E-13 107.5 10.8 62 223-284 489-552 (588)
114 COG1120 FepC ABC-type cobalami 98.9 1.2E-08 2.7E-13 95.0 9.6 58 224-281 143-204 (258)
115 cd00009 AAA The AAA+ (ATPases 98.9 1.7E-08 3.7E-13 84.9 9.8 73 177-249 18-96 (151)
116 PF05621 TniB: Bacterial TniB 98.8 9.4E-08 2E-12 90.7 15.6 188 177-369 60-286 (302)
117 PRK14964 DNA polymerase III su 98.8 2.6E-08 5.7E-13 101.3 12.7 208 135-368 4-237 (491)
118 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 1.5E-08 3.4E-13 94.0 10.0 59 223-281 143-204 (254)
119 TIGR03345 VI_ClpV1 type VI sec 98.8 1.7E-08 3.6E-13 109.8 11.9 101 140-253 183-296 (852)
120 COG3839 MalK ABC-type sugar tr 98.8 1E-08 2.2E-13 99.2 9.0 110 172-281 23-199 (338)
121 COG4618 ArpD ABC-type protease 98.8 1.8E-08 3.9E-13 100.3 10.8 114 172-285 356-541 (580)
122 cd03238 ABC_UvrA The excision 98.8 2.9E-08 6.3E-13 88.2 11.1 109 172-280 15-153 (176)
123 cd03223 ABCD_peroxisomal_ALDP 98.8 2.3E-08 5.1E-13 87.9 10.3 109 172-280 21-152 (166)
124 PRK03992 proteasome-activating 98.8 6.4E-10 1.4E-14 111.0 0.1 82 8-104 267-354 (389)
125 KOG0726|consensus 98.8 8.3E-10 1.8E-14 102.6 0.5 88 4-106 317-411 (440)
126 cd03216 ABC_Carb_Monos_I This 98.8 3.3E-08 7.2E-13 86.7 10.4 109 172-280 20-146 (163)
127 TIGR00958 3a01208 Conjugate Tr 98.8 2.7E-08 5.9E-13 106.9 11.4 62 223-284 621-682 (711)
128 cd03222 ABC_RNaseL_inhibitor T 98.8 3.2E-08 6.9E-13 88.0 10.0 108 173-280 20-136 (177)
129 PRK08691 DNA polymerase III su 98.8 5.1E-08 1.1E-12 102.0 12.9 116 136-264 8-145 (709)
130 COG1127 Ttg2A ABC-type transpo 98.8 2.7E-08 5.8E-13 90.7 9.4 57 226-282 152-212 (263)
131 TIGR02868 CydC thiol reductant 98.8 2.1E-08 4.6E-13 104.2 10.0 53 223-275 474-528 (529)
132 TIGR03375 type_I_sec_LssB type 98.8 2.6E-08 5.5E-13 106.9 10.9 62 223-284 605-668 (694)
133 COG1132 MdlB ABC-type multidru 98.8 2.8E-08 6E-13 104.2 11.0 113 172-284 349-532 (567)
134 PRK14970 DNA polymerase III su 98.8 5.1E-08 1.1E-12 96.7 12.0 105 134-251 7-122 (367)
135 PRK11160 cysteine/glutathione 98.8 3.1E-08 6.7E-13 103.9 11.0 62 223-284 479-542 (574)
136 TIGR02640 gas_vesic_GvpN gas v 98.8 1.2E-08 2.6E-13 96.5 7.1 37 177-213 20-56 (262)
137 COG4619 ABC-type uncharacteriz 98.8 2.9E-08 6.4E-13 85.7 8.6 48 229-276 143-194 (223)
138 TIGR02857 CydD thiol reductant 98.8 3.5E-08 7.6E-13 102.5 11.1 62 223-284 462-525 (529)
139 PRK14951 DNA polymerase III su 98.8 5.8E-08 1.2E-12 101.4 12.5 59 134-204 6-64 (618)
140 PRK07994 DNA polymerase III su 98.8 4.2E-08 9.1E-13 102.7 11.5 115 137-264 9-145 (647)
141 PRK11176 lipid transporter ATP 98.8 3.5E-08 7.6E-13 103.7 11.1 63 222-284 483-547 (582)
142 PRK00440 rfc replication facto 98.8 1.7E-07 3.7E-12 90.7 15.1 60 131-203 4-63 (319)
143 PRK06893 DNA replication initi 98.8 6.6E-08 1.4E-12 89.6 11.5 174 179-367 40-225 (229)
144 TIGR01193 bacteriocin_ABC ABC- 98.8 3.3E-08 7.1E-13 106.3 10.9 63 222-284 614-677 (708)
145 COG2884 FtsE Predicted ATPase 98.8 7E-08 1.5E-12 85.0 10.8 63 224-286 142-207 (223)
146 TIGR02397 dnaX_nterm DNA polym 98.8 9.5E-08 2.1E-12 94.0 13.0 106 134-251 4-131 (355)
147 PRK10790 putative multidrug tr 98.8 3.6E-08 7.8E-13 103.9 10.6 62 223-284 480-543 (592)
148 PRK12422 chromosomal replicati 98.8 4.3E-08 9.3E-13 99.3 10.6 76 178-254 141-219 (445)
149 PRK14949 DNA polymerase III su 98.8 8.3E-08 1.8E-12 102.5 13.1 59 135-205 7-65 (944)
150 COG1125 OpuBA ABC-type proline 98.7 4.1E-08 8.9E-13 90.1 8.8 107 172-278 21-198 (309)
151 PRK14963 DNA polymerase III su 98.7 4.9E-08 1.1E-12 100.2 10.5 54 139-204 9-62 (504)
152 cd03246 ABCC_Protease_Secretio 98.7 7E-08 1.5E-12 85.4 10.2 112 172-283 22-163 (173)
153 COG1224 TIP49 DNA helicase TIP 98.7 8.4E-08 1.8E-12 91.7 11.1 71 145-223 40-112 (450)
154 PRK14959 DNA polymerase III su 98.7 1.1E-07 2.4E-12 98.8 13.1 60 133-204 5-64 (624)
155 cd03228 ABCC_MRP_Like The MRP 98.7 1E-07 2.2E-12 84.3 10.9 112 172-283 22-162 (171)
156 COG1135 AbcC ABC-type metal io 98.7 7.2E-08 1.6E-12 90.9 10.0 116 172-287 26-214 (339)
157 CHL00195 ycf46 Ycf46; Provisio 98.7 2.4E-09 5.1E-14 109.2 0.1 80 9-103 358-445 (489)
158 COG4988 CydD ABC-type transpor 98.7 7.1E-08 1.5E-12 97.9 10.6 63 222-284 459-523 (559)
159 TIGR00390 hslU ATP-dependent p 98.7 3.2E-08 6.9E-13 97.9 7.8 91 145-235 13-106 (441)
160 PTZ00361 26 proteosome regulat 98.7 2.1E-09 4.5E-14 108.1 -0.5 81 9-104 320-406 (438)
161 COG4181 Predicted ABC-type tra 98.7 9.6E-08 2.1E-12 82.8 9.7 62 224-285 151-216 (228)
162 cd03247 ABCC_cytochrome_bd The 98.7 1.2E-07 2.6E-12 84.3 10.8 110 172-281 22-162 (178)
163 PRK07764 DNA polymerase III su 98.7 1E-07 2.3E-12 102.7 12.3 59 134-204 5-63 (824)
164 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.5E-07 5.5E-12 85.0 13.3 82 148-252 21-105 (226)
165 PRK10733 hflB ATP-dependent me 98.7 2.9E-09 6.3E-14 112.6 0.3 81 9-104 288-374 (644)
166 PRK05201 hslU ATP-dependent pr 98.7 2.5E-08 5.5E-13 98.6 6.8 95 145-239 16-113 (443)
167 PRK14969 DNA polymerase III su 98.7 2.5E-07 5.3E-12 95.8 14.4 115 137-264 9-145 (527)
168 PRK13657 cyclic beta-1,2-gluca 98.7 7E-08 1.5E-12 101.6 10.5 62 223-284 475-538 (588)
169 PRK14087 dnaA chromosomal repl 98.7 1.1E-07 2.5E-12 96.4 11.6 187 178-369 141-345 (450)
170 COG0466 Lon ATP-dependent Lon 98.7 3E-08 6.6E-13 102.3 7.3 224 145-377 324-589 (782)
171 TIGR02203 MsbA_lipidA lipid A 98.7 7.2E-08 1.6E-12 101.1 10.4 63 222-284 472-536 (571)
172 PRK05896 DNA polymerase III su 98.7 1.9E-07 4.1E-12 96.7 13.1 60 132-203 4-63 (605)
173 KOG0056|consensus 98.7 3.2E-08 7E-13 97.9 7.0 112 172-283 558-740 (790)
174 PRK08084 DNA replication initi 98.7 4E-07 8.7E-12 84.7 13.9 178 177-368 44-232 (235)
175 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 1.2E-07 2.7E-12 86.8 10.4 53 228-280 149-205 (218)
176 COG1122 CbiO ABC-type cobalt t 98.7 6E-08 1.3E-12 89.9 8.3 54 228-281 147-204 (235)
177 TIGR02314 ABC_MetN D-methionin 98.7 1.2E-07 2.7E-12 92.9 10.8 60 225-284 146-210 (343)
178 PRK07940 DNA polymerase III su 98.7 1.3E-07 2.8E-12 94.3 11.0 117 144-264 5-143 (394)
179 PRK14957 DNA polymerase III su 98.7 1.9E-07 4.2E-12 96.3 12.7 118 134-264 6-145 (546)
180 TIGR00960 3a0501s02 Type II (G 98.7 1.6E-07 3.5E-12 86.0 10.9 53 228-280 147-202 (216)
181 PRK14955 DNA polymerase III su 98.7 3E-07 6.6E-12 92.1 13.8 54 139-204 11-64 (397)
182 KOG0057|consensus 98.7 8.7E-08 1.9E-12 96.3 9.7 113 172-284 372-554 (591)
183 PRK10789 putative multidrug tr 98.7 1.1E-07 2.4E-12 99.7 10.9 61 224-284 456-518 (569)
184 cd03230 ABC_DR_subfamily_A Thi 98.7 1.6E-07 3.4E-12 83.2 10.3 109 172-280 20-159 (173)
185 TIGR01846 type_I_sec_HlyB type 98.7 9.9E-08 2.1E-12 102.4 10.8 62 223-284 597-660 (694)
186 KOG0651|consensus 98.7 1.1E-08 2.5E-13 95.9 3.0 84 4-102 264-353 (388)
187 PRK05563 DNA polymerase III su 98.7 2.4E-07 5.2E-12 96.5 13.1 104 136-251 8-133 (559)
188 cd03226 ABC_cobalt_CbiO_domain 98.7 1.9E-07 4.1E-12 84.8 10.9 54 227-280 134-190 (205)
189 TIGR01241 FtsH_fam ATP-depende 98.7 5.2E-09 1.1E-13 107.8 0.5 79 10-103 192-276 (495)
190 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 1.7E-07 3.8E-12 87.0 10.7 56 228-283 141-200 (236)
191 TIGR01192 chvA glucan exporter 98.7 1.2E-07 2.6E-12 99.7 10.7 62 223-284 475-538 (585)
192 cd00267 ABC_ATPase ABC (ATP-bi 98.6 1.5E-07 3.3E-12 81.7 9.5 110 172-281 19-145 (157)
193 KOG0738|consensus 98.6 5.5E-09 1.2E-13 100.7 0.3 85 3-104 340-434 (491)
194 cd03214 ABC_Iron-Siderophores_ 98.6 2.1E-07 4.5E-12 82.9 10.6 108 172-279 19-161 (180)
195 PRK13538 cytochrome c biogenes 98.6 1.3E-07 2.9E-12 85.9 9.4 57 228-284 138-197 (204)
196 PRK10787 DNA-binding ATP-depen 98.6 5.4E-08 1.2E-12 104.8 7.7 100 145-252 323-431 (784)
197 KOG2004|consensus 98.6 7.8E-08 1.7E-12 98.9 8.2 98 145-250 412-518 (906)
198 PRK11432 fbpC ferric transport 98.6 2E-07 4.3E-12 91.8 10.8 61 224-284 141-206 (351)
199 TIGR01842 type_I_sec_PrtD type 98.6 1.6E-07 3.5E-12 97.9 10.8 62 223-284 458-522 (544)
200 PRK11650 ugpC glycerol-3-phosp 98.6 1.9E-07 4.1E-12 92.1 10.7 61 224-284 139-204 (356)
201 KOG1969|consensus 98.6 6.8E-08 1.5E-12 99.6 7.7 116 133-250 260-400 (877)
202 TIGR02211 LolD_lipo_ex lipopro 98.6 2.4E-07 5.2E-12 85.1 10.6 55 228-282 150-208 (221)
203 TIGR03608 L_ocin_972_ABC putat 98.6 2.6E-07 5.6E-12 83.9 10.6 52 229-280 144-198 (206)
204 cd03293 ABC_NrtD_SsuB_transpor 98.6 2.3E-07 5.1E-12 85.2 10.4 52 228-279 140-195 (220)
205 cd03225 ABC_cobalt_CbiO_domain 98.6 2.6E-07 5.6E-12 84.3 10.6 54 228-281 143-199 (211)
206 cd03259 ABC_Carb_Solutes_like 98.6 2.7E-07 5.9E-12 84.3 10.7 52 228-279 139-194 (213)
207 TIGR03265 PhnT2 putative 2-ami 98.6 2.4E-07 5.1E-12 91.4 11.0 61 224-284 139-204 (353)
208 TIGR02673 FtsE cell division A 98.6 3.4E-07 7.3E-12 83.7 11.2 54 228-281 146-202 (214)
209 PRK09111 DNA polymerase III su 98.6 4.3E-07 9.3E-12 95.0 13.3 119 133-264 13-158 (598)
210 cd03301 ABC_MalK_N The N-termi 98.6 2.7E-07 5.9E-12 84.2 10.6 53 228-280 139-195 (213)
211 KOG0991|consensus 98.6 9.4E-08 2E-12 86.6 7.2 106 131-252 14-128 (333)
212 PRK09452 potA putrescine/sperm 98.6 2.4E-07 5.1E-12 92.0 10.8 61 224-284 149-214 (375)
213 TIGR02204 MsbA_rel ABC transpo 98.6 1.8E-07 3.9E-12 98.2 10.5 62 223-284 480-543 (576)
214 cd03215 ABC_Carb_Monos_II This 98.6 1.9E-07 4.1E-12 83.3 9.0 110 172-281 20-169 (182)
215 PRK11153 metN DL-methionine tr 98.6 2.8E-07 6.1E-12 90.6 10.8 58 227-284 148-210 (343)
216 PLN03232 ABC transporter C fam 98.6 1.9E-07 4E-12 107.7 11.0 62 223-284 1375-1438(1495)
217 COG1123 ATPase components of v 98.6 1.8E-07 3.9E-12 95.2 9.5 113 172-284 311-499 (539)
218 cd03292 ABC_FtsE_transporter F 98.6 3.4E-07 7.3E-12 83.6 10.6 53 228-280 145-200 (214)
219 PRK08727 hypothetical protein; 98.6 3.1E-07 6.7E-12 85.4 10.5 178 178-369 41-228 (233)
220 PRK11607 potG putrescine trans 98.6 3.5E-07 7.5E-12 90.9 11.5 61 224-284 154-219 (377)
221 PLN03130 ABC transporter C fam 98.6 2E-07 4.4E-12 107.8 11.2 62 223-284 1378-1441(1622)
222 PRK11248 tauB taurine transpor 98.6 3.3E-07 7.2E-12 86.3 10.7 53 228-280 137-193 (255)
223 COG1118 CysA ABC-type sulfate/ 98.6 2.2E-07 4.7E-12 87.5 9.2 58 222-279 140-201 (345)
224 PRK14953 DNA polymerase III su 98.6 6.9E-07 1.5E-11 91.5 13.7 60 132-203 4-63 (486)
225 cd03266 ABC_NatA_sodium_export 98.6 3.4E-07 7.3E-12 83.9 10.4 53 228-280 145-200 (218)
226 PRK10522 multidrug transporter 98.6 2.7E-07 5.9E-12 96.3 10.9 113 172-284 343-518 (547)
227 PRK13650 cbiO cobalt transport 98.6 3.1E-07 6.7E-12 87.7 10.4 57 228-284 149-209 (279)
228 COG1119 ModF ABC-type molybden 98.6 2.9E-07 6.3E-12 84.3 9.6 56 226-281 178-238 (257)
229 PRK14952 DNA polymerase III su 98.6 5.9E-07 1.3E-11 93.5 13.2 57 136-204 5-61 (584)
230 cd03261 ABC_Org_Solvent_Resist 98.6 4.6E-07 1E-11 84.1 11.3 53 228-280 145-201 (235)
231 PRK14950 DNA polymerase III su 98.6 4.5E-07 9.7E-12 95.2 12.3 59 134-204 6-64 (585)
232 TIGR01188 drrA daunorubicin re 98.6 3.9E-07 8.4E-12 88.0 10.9 58 227-284 132-193 (302)
233 COG1474 CDC6 Cdc6-related prot 98.6 1.5E-06 3.2E-11 85.9 15.2 210 145-369 18-262 (366)
234 cd03265 ABC_DrrA DrrA is the A 98.6 4.1E-07 9E-12 83.6 10.6 53 228-280 140-196 (220)
235 cd03269 ABC_putative_ATPase Th 98.6 4.1E-07 8.9E-12 82.9 10.5 53 228-280 137-192 (210)
236 cd03231 ABC_CcmA_heme_exporter 98.6 3.9E-07 8.5E-12 82.6 10.3 54 227-280 133-189 (201)
237 PRK11629 lolD lipoprotein tran 98.6 4.5E-07 9.7E-12 84.1 10.9 55 228-282 154-212 (233)
238 cd03229 ABC_Class3 This class 98.6 3.9E-07 8.3E-12 81.0 10.0 109 172-280 20-165 (178)
239 PRK11247 ssuB aliphatic sulfon 98.6 4.5E-07 9.8E-12 85.5 10.9 108 172-279 32-197 (257)
240 PRK09544 znuC high-affinity zi 98.6 4.2E-07 9.2E-12 85.4 10.6 109 172-280 24-185 (251)
241 PRK13537 nodulation ABC transp 98.6 4.1E-07 8.9E-12 88.0 10.8 58 227-284 146-207 (306)
242 PRK11000 maltose/maltodextrin 98.6 3.8E-07 8.2E-12 90.5 10.8 60 225-284 139-203 (369)
243 cd03258 ABC_MetN_methionine_tr 98.6 4.9E-07 1.1E-11 83.8 10.9 53 228-280 149-205 (233)
244 PRK13541 cytochrome c biogenes 98.6 3.7E-07 8E-12 82.3 9.7 107 172-278 20-185 (195)
245 cd03263 ABC_subfamily_A The AB 98.6 4.8E-07 1E-11 83.1 10.6 53 228-280 142-196 (220)
246 PRK13543 cytochrome c biogenes 98.6 4.7E-07 1E-11 82.9 10.5 54 227-280 145-201 (214)
247 TIGR01242 26Sp45 26S proteasom 98.6 1.3E-08 2.7E-13 100.9 -0.0 81 9-104 259-345 (364)
248 cd03218 ABC_YhbG The ABC trans 98.5 6.8E-07 1.5E-11 82.7 11.5 52 228-279 142-196 (232)
249 PRK10584 putative ABC transpor 98.5 6.4E-07 1.4E-11 82.7 11.3 56 228-283 155-214 (228)
250 COG0542 clpA ATP-binding subun 98.5 7.8E-08 1.7E-12 101.5 5.8 99 145-249 492-605 (786)
251 PRK13635 cbiO cobalt transport 98.5 4.4E-07 9.5E-12 86.6 10.4 57 228-284 149-209 (279)
252 cd03268 ABC_BcrA_bacitracin_re 98.5 4.9E-07 1.1E-11 82.3 10.3 53 228-280 135-190 (208)
253 COG5265 ATM1 ABC-type transpor 98.5 1.8E-07 3.9E-12 91.3 7.6 113 172-284 283-466 (497)
254 cd03237 ABC_RNaseL_inhibitor_d 98.5 6.3E-07 1.4E-11 84.0 11.1 108 173-280 20-180 (246)
255 PRK08451 DNA polymerase III su 98.5 5.6E-07 1.2E-11 92.6 11.5 58 134-203 4-61 (535)
256 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 6.1E-07 1.3E-11 82.8 10.8 110 172-281 42-207 (224)
257 COG4608 AppF ABC-type oligopep 98.5 2.8E-07 6.1E-12 85.8 8.5 113 172-284 33-178 (268)
258 PRK06647 DNA polymerase III su 98.5 1.1E-06 2.4E-11 91.4 13.9 55 138-204 10-64 (563)
259 PTZ00265 multidrug resistance 98.5 3.3E-07 7.1E-12 105.2 10.8 62 223-284 1362-1427(1466)
260 PRK13647 cbiO cobalt transport 98.5 5.5E-07 1.2E-11 85.7 10.7 57 228-284 147-207 (274)
261 COG1219 ClpX ATP-dependent pro 98.5 1.1E-07 2.3E-12 89.8 5.6 108 145-252 62-177 (408)
262 PTZ00112 origin recognition co 98.5 9.8E-07 2.1E-11 93.7 13.3 101 144-252 755-884 (1164)
263 PRK13648 cbiO cobalt transport 98.5 4.8E-07 1E-11 85.9 10.2 56 228-283 151-210 (269)
264 TIGR01184 ntrCD nitrate transp 98.5 7.4E-07 1.6E-11 82.6 11.3 53 228-280 123-179 (230)
265 TIGR01166 cbiO cobalt transpor 98.5 3.8E-07 8.2E-12 81.9 9.0 49 228-276 136-187 (190)
266 cd03298 ABC_ThiQ_thiamine_tran 98.5 5.8E-07 1.3E-11 82.0 10.4 53 228-280 137-193 (211)
267 PRK08903 DnaA regulatory inact 98.5 1.4E-06 3E-11 80.4 13.0 62 176-251 40-104 (227)
268 TIGR01288 nodI ATP-binding ABC 98.5 5.6E-07 1.2E-11 87.0 10.8 57 228-284 144-204 (303)
269 TIGR03410 urea_trans_UrtE urea 98.5 5.6E-07 1.2E-11 83.2 10.3 54 228-281 140-197 (230)
270 PRK10247 putative ABC transpor 98.5 6.1E-07 1.3E-11 82.8 10.5 56 228-283 146-205 (225)
271 cd03264 ABC_drug_resistance_li 98.5 6.2E-07 1.3E-11 81.8 10.4 53 228-280 139-193 (211)
272 KOG0745|consensus 98.5 1.1E-07 2.4E-12 92.9 5.6 72 179-250 227-304 (564)
273 COG4525 TauB ABC-type taurine 98.5 3.6E-07 7.9E-12 80.9 8.2 105 172-276 25-193 (259)
274 TIGR00957 MRP_assoc_pro multi 98.5 4.1E-07 9E-12 105.1 11.1 62 223-284 1425-1488(1522)
275 cd03262 ABC_HisP_GlnQ_permease 98.5 7.2E-07 1.6E-11 81.4 10.6 53 228-280 144-199 (213)
276 TIGR03522 GldA_ABC_ATP gliding 98.5 7.1E-07 1.5E-11 86.2 11.0 57 228-284 142-201 (301)
277 PRK05642 DNA replication initi 98.5 7.9E-07 1.7E-11 82.7 10.9 175 178-367 45-230 (234)
278 PRK13540 cytochrome c biogenes 98.5 5.8E-07 1.2E-11 81.4 9.8 55 227-281 135-192 (200)
279 TIGR01194 cyc_pep_trnsptr cycl 98.5 6.2E-07 1.3E-11 93.8 11.4 62 223-284 474-539 (555)
280 cd03289 ABCC_CFTR2 The CFTR su 98.5 6.9E-07 1.5E-11 85.1 10.7 61 224-284 143-205 (275)
281 PRK10908 cell division protein 98.5 8.1E-07 1.7E-11 81.7 10.8 54 228-281 146-202 (222)
282 COG1131 CcmA ABC-type multidru 98.5 5.8E-07 1.3E-11 86.4 10.2 60 225-284 142-206 (293)
283 PRK07133 DNA polymerase III su 98.5 1.1E-06 2.4E-11 92.8 13.1 120 132-264 6-144 (725)
284 cd03253 ABCC_ATM1_transporter 98.5 6.6E-07 1.4E-11 83.0 10.3 59 225-283 143-203 (236)
285 TIGR01186 proV glycine betaine 98.5 6.4E-07 1.4E-11 88.4 10.7 59 226-284 136-199 (363)
286 PRK13642 cbiO cobalt transport 98.5 6.5E-07 1.4E-11 85.4 10.4 57 228-284 149-209 (277)
287 PRK14965 DNA polymerase III su 98.5 1.1E-06 2.4E-11 91.9 13.0 115 137-264 9-145 (576)
288 cd03245 ABCC_bacteriocin_expor 98.5 6.4E-07 1.4E-11 82.2 10.0 55 226-280 147-203 (220)
289 TIGR00954 3a01203 Peroxysomal 98.5 5.4E-07 1.2E-11 96.0 10.8 61 224-284 587-647 (659)
290 cd03213 ABCG_EPDR ABCG transpo 98.5 7.7E-07 1.7E-11 80.3 10.3 106 172-277 29-172 (194)
291 PRK10851 sulfate/thiosulfate t 98.5 6.8E-07 1.5E-11 88.1 10.8 61 224-284 141-206 (353)
292 cd03217 ABC_FeS_Assembly ABC-t 98.5 6.2E-07 1.3E-11 81.3 9.6 109 172-280 20-168 (200)
293 COG4987 CydC ABC-type transpor 98.5 4.9E-07 1.1E-11 90.9 9.5 113 172-284 358-541 (573)
294 KOG2028|consensus 98.5 1.6E-07 3.5E-12 90.0 5.9 67 177-250 161-235 (554)
295 cd03224 ABC_TM1139_LivF_branch 98.5 7.4E-07 1.6E-11 81.8 10.2 52 229-280 142-196 (222)
296 PTZ00243 ABC transporter; Prov 98.5 5.2E-07 1.1E-11 104.2 11.2 62 223-284 1449-1513(1560)
297 cd03254 ABCC_Glucan_exporter_l 98.5 6.9E-07 1.5E-11 82.5 10.0 57 226-282 146-204 (229)
298 PRK13539 cytochrome c biogenes 98.5 7.5E-07 1.6E-11 81.1 10.0 53 228-280 136-191 (207)
299 PRK06620 hypothetical protein; 98.5 1E-06 2.2E-11 80.8 10.7 165 179-368 45-212 (214)
300 PRK13536 nodulation factor exp 98.5 9.4E-07 2E-11 86.7 11.1 57 228-284 181-241 (340)
301 TIGR03258 PhnT 2-aminoethylpho 98.5 8.2E-07 1.8E-11 87.8 10.8 59 226-284 144-208 (362)
302 PRK13644 cbiO cobalt transport 98.5 1E-06 2.2E-11 83.9 11.0 57 228-284 145-204 (274)
303 cd03267 ABC_NatA_like Similar 98.5 9.9E-07 2.1E-11 82.0 10.8 52 229-280 163-218 (236)
304 cd03251 ABCC_MsbA MsbA is an e 98.5 7.9E-07 1.7E-11 82.4 10.1 59 225-283 144-204 (234)
305 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.5 7.9E-07 1.7E-11 82.7 10.1 58 226-283 146-205 (238)
306 cd03296 ABC_CysA_sulfate_impor 98.5 9.5E-07 2.1E-11 82.2 10.6 53 228-280 145-201 (239)
307 PRK13633 cobalt transporter AT 98.5 8E-07 1.7E-11 84.8 10.3 57 228-284 153-213 (280)
308 cd03283 ABC_MutS-like MutS-lik 98.5 1.2E-06 2.6E-11 79.4 10.9 108 172-279 19-151 (199)
309 cd03252 ABCC_Hemolysin The ABC 98.5 9.5E-07 2.1E-11 82.1 10.5 57 226-282 145-203 (237)
310 cd03232 ABC_PDR_domain2 The pl 98.5 9E-07 2E-11 79.7 9.9 106 172-277 27-169 (192)
311 TIGR01277 thiQ thiamine ABC tr 98.5 1E-06 2.2E-11 80.6 10.3 52 229-280 138-193 (213)
312 PRK11308 dppF dipeptide transp 98.5 9.5E-07 2.1E-11 86.2 10.7 59 226-284 161-224 (327)
313 PRK06305 DNA polymerase III su 98.5 1.6E-06 3.5E-11 88.1 12.8 55 138-204 11-65 (451)
314 cd03295 ABC_OpuCA_Osmoprotecti 98.5 1.1E-06 2.3E-11 82.1 10.7 53 227-279 143-199 (242)
315 PF07724 AAA_2: AAA domain (Cd 98.5 1.9E-07 4.2E-12 82.5 5.4 73 177-251 2-82 (171)
316 TIGR01189 ccmA heme ABC export 98.5 8.8E-07 1.9E-11 80.0 9.8 49 228-276 136-187 (198)
317 TIGR00602 rad24 checkpoint pro 98.5 5.2E-07 1.1E-11 94.6 9.4 115 130-252 70-210 (637)
318 PRK11144 modC molybdate transp 98.5 9.6E-07 2.1E-11 87.1 10.8 58 227-284 136-198 (352)
319 cd03235 ABC_Metallic_Cations A 98.5 7.9E-07 1.7E-11 81.2 9.5 53 228-280 141-196 (213)
320 cd03219 ABC_Mj1267_LivG_branch 98.5 1.3E-06 2.8E-11 81.0 11.1 54 228-281 152-208 (236)
321 PRK09536 btuD corrinoid ABC tr 98.5 1E-06 2.2E-11 88.2 10.9 59 226-284 146-208 (402)
322 cd03300 ABC_PotA_N PotA is an 98.5 1.3E-06 2.9E-11 80.9 11.0 53 228-280 139-195 (232)
323 cd03294 ABC_Pro_Gly_Bertaine T 98.5 1.1E-06 2.3E-11 83.5 10.6 52 228-279 169-224 (269)
324 PRK13546 teichoic acids export 98.5 1.1E-06 2.4E-11 83.2 10.7 109 172-280 44-207 (264)
325 cd03369 ABCC_NFT1 Domain 2 of 98.5 1.4E-06 3.1E-11 79.2 11.0 112 172-283 28-191 (207)
326 PRK10575 iron-hydroxamate tran 98.5 1E-06 2.2E-11 83.4 10.4 53 228-280 156-212 (265)
327 PRK14954 DNA polymerase III su 98.5 2.1E-06 4.6E-11 90.1 13.6 54 139-204 11-64 (620)
328 cd03256 ABC_PhnC_transporter A 98.5 1.2E-06 2.6E-11 81.5 10.7 52 229-280 154-209 (241)
329 PRK13638 cbiO cobalt transport 98.5 1.1E-06 2.4E-11 83.5 10.5 54 228-281 145-201 (271)
330 PRK13652 cbiO cobalt transport 98.5 1.1E-06 2.4E-11 83.8 10.5 58 227-284 145-207 (277)
331 cd03244 ABCC_MRP_domain2 Domai 98.5 1.4E-06 3E-11 80.0 10.9 57 226-282 146-204 (221)
332 PRK13632 cbiO cobalt transport 98.5 9.5E-07 2.1E-11 83.9 10.0 56 228-283 151-210 (271)
333 COG3638 ABC-type phosphate/pho 98.5 7.5E-07 1.6E-11 81.1 8.7 56 224-279 152-211 (258)
334 CHL00176 ftsH cell division pr 98.5 2.7E-08 5.8E-13 104.7 -0.8 79 9-102 319-403 (638)
335 COG4555 NatA ABC-type Na+ tran 98.5 8.1E-07 1.7E-11 79.1 8.6 58 227-284 141-202 (245)
336 COG4161 ArtP ABC-type arginine 98.4 1.2E-06 2.6E-11 75.3 9.4 56 224-279 146-204 (242)
337 PRK13639 cbiO cobalt transport 98.4 1.3E-06 2.9E-11 83.1 10.8 57 228-284 146-206 (275)
338 PRK06835 DNA replication prote 98.4 4.2E-07 9.1E-12 88.5 7.5 101 151-257 160-266 (329)
339 TIGR03740 galliderm_ABC gallid 98.4 1.3E-06 2.8E-11 80.4 10.4 53 228-280 133-188 (223)
340 TIGR03873 F420-0_ABC_ATP propo 98.4 1.2E-06 2.6E-11 82.5 10.4 53 228-280 146-201 (256)
341 PRK09493 glnQ glutamine ABC tr 98.4 1.4E-06 3.1E-11 81.1 10.7 53 228-280 145-200 (240)
342 TIGR01271 CFTR_protein cystic 98.4 7.7E-07 1.7E-11 102.6 10.7 62 223-284 1357-1420(1490)
343 PRK10771 thiQ thiamine transpo 98.4 1.3E-06 2.8E-11 80.9 10.4 53 228-280 138-194 (232)
344 PRK15112 antimicrobial peptide 98.4 1.3E-06 2.8E-11 82.9 10.5 54 228-281 158-215 (267)
345 PRK15079 oligopeptide ABC tran 98.4 1.2E-06 2.7E-11 85.5 10.6 58 227-284 169-231 (331)
346 TIGR02315 ABC_phnC phosphonate 98.4 1.4E-06 3E-11 81.2 10.5 52 228-279 154-209 (243)
347 PRK14250 phosphate ABC transpo 98.4 1.4E-06 3.1E-11 81.2 10.5 55 226-280 138-196 (241)
348 cd03248 ABCC_TAP TAP, the Tran 98.4 1.8E-06 3.9E-11 79.6 11.0 58 226-283 157-216 (226)
349 PRK13636 cbiO cobalt transport 98.4 1.4E-06 3.1E-11 83.2 10.6 57 228-284 150-211 (283)
350 PRK11831 putative ABC transpor 98.4 1.5E-06 3.3E-11 82.4 10.7 53 228-280 152-208 (269)
351 PRK10070 glycine betaine trans 98.4 1.4E-06 3E-11 87.1 10.8 54 228-281 173-230 (400)
352 PRK12377 putative replication 98.4 4.6E-07 9.9E-12 84.8 6.9 80 178-259 101-185 (248)
353 cd03299 ABC_ModC_like Archeal 98.4 1.5E-06 3.3E-11 80.7 10.4 55 226-280 136-194 (235)
354 COG3840 ThiQ ABC-type thiamine 98.4 1.3E-06 2.9E-11 76.5 9.1 55 224-278 134-192 (231)
355 PLN03232 ABC transporter C fam 98.4 1.1E-06 2.5E-11 101.3 11.3 113 172-284 637-808 (1495)
356 TIGR03015 pepcterm_ATPase puta 98.4 7.6E-06 1.6E-10 77.3 15.1 47 322-371 219-265 (269)
357 KOG0060|consensus 98.4 8E-07 1.7E-11 89.9 8.7 53 224-276 575-627 (659)
358 PRK08181 transposase; Validate 98.4 3E-07 6.4E-12 87.0 5.4 78 177-256 105-186 (269)
359 TIGR02142 modC_ABC molybdenum 98.4 1.7E-06 3.6E-11 85.5 10.9 57 228-284 140-201 (354)
360 PRK07952 DNA replication prote 98.4 5E-07 1.1E-11 84.3 6.8 79 178-258 99-183 (244)
361 PRK13637 cbiO cobalt transport 98.4 1.9E-06 4.1E-11 82.6 10.8 58 227-284 152-214 (287)
362 PRK11124 artP arginine transpo 98.4 2.5E-06 5.3E-11 79.6 11.3 53 228-280 150-205 (242)
363 COG1134 TagH ABC-type polysacc 98.4 1.5E-06 3.2E-11 79.7 9.5 113 172-284 47-216 (249)
364 PRK10895 lipopolysaccharide AB 98.4 2.4E-06 5.1E-11 79.6 11.2 53 228-280 146-201 (241)
365 PF05673 DUF815: Protein of un 98.4 7.8E-07 1.7E-11 82.0 7.6 129 145-294 28-160 (249)
366 PRK13548 hmuV hemin importer A 98.4 2.4E-06 5.2E-11 80.6 11.2 52 229-280 144-205 (258)
367 TIGR00968 3a0106s01 sulfate AB 98.4 2.2E-06 4.8E-11 79.7 10.7 52 229-280 140-195 (237)
368 cd03250 ABCC_MRP_domain1 Domai 98.4 3.3E-06 7.2E-11 76.6 11.6 112 172-283 25-195 (204)
369 PRK13640 cbiO cobalt transport 98.4 2E-06 4.3E-11 82.2 10.5 56 229-284 153-212 (282)
370 TIGR02982 heterocyst_DevA ABC 98.4 2.4E-06 5.2E-11 78.5 10.6 56 228-283 150-209 (220)
371 cd03288 ABCC_SUR2 The SUR doma 98.4 2.2E-06 4.8E-11 80.8 10.6 61 224-284 161-223 (257)
372 PF00308 Bac_DnaA: Bacterial d 98.4 4.8E-07 1E-11 83.3 5.8 77 179-256 35-116 (219)
373 PRK06526 transposase; Provisio 98.4 5.8E-07 1.3E-11 84.5 6.3 76 177-254 97-176 (254)
374 PRK14971 DNA polymerase III su 98.4 3.1E-06 6.7E-11 89.1 12.4 118 134-264 7-147 (614)
375 cd03297 ABC_ModC_molybdenum_tr 98.4 2.4E-06 5.2E-11 78.1 10.2 52 229-280 141-196 (214)
376 PRK11300 livG leucine/isoleuci 98.4 2.4E-06 5.2E-11 80.3 10.5 53 228-280 162-218 (255)
377 PRK14948 DNA polymerase III su 98.4 9.4E-07 2E-11 93.0 8.4 120 133-265 5-148 (620)
378 PRK13643 cbiO cobalt transport 98.4 2.4E-06 5.3E-11 81.9 10.6 57 228-284 153-213 (288)
379 cd03257 ABC_NikE_OppD_transpor 98.4 2.9E-06 6.3E-11 78.2 10.7 53 228-280 154-210 (228)
380 PRK10253 iron-enterobactin tra 98.4 2.4E-06 5.3E-11 80.8 10.4 53 228-280 152-208 (265)
381 PRK13646 cbiO cobalt transport 98.4 2.4E-06 5.3E-11 81.8 10.4 57 228-284 154-215 (286)
382 PRK09183 transposase/IS protei 98.4 6.8E-07 1.5E-11 84.4 6.4 78 175-253 99-180 (259)
383 PRK11231 fecE iron-dicitrate t 98.4 2.7E-06 5.8E-11 80.0 10.3 53 228-280 147-202 (255)
384 PRK11264 putative amino-acid A 98.4 3.3E-06 7.1E-11 79.1 10.8 53 228-280 153-208 (250)
385 PRK15056 manganese/iron transp 98.3 3.1E-06 6.6E-11 80.5 10.7 53 228-280 151-206 (272)
386 TIGR02769 nickel_nikE nickel i 98.3 3.1E-06 6.8E-11 80.1 10.7 53 228-280 159-215 (265)
387 PRK15177 Vi polysaccharide exp 98.3 3.5E-06 7.6E-11 77.2 10.7 109 172-280 7-167 (213)
388 TIGR03771 anch_rpt_ABC anchore 98.3 5.3E-06 1.2E-10 76.5 12.0 54 228-281 122-178 (223)
389 PRK11614 livF leucine/isoleuci 98.3 2.3E-06 4.9E-11 79.6 9.5 52 228-279 146-200 (237)
390 TIGR01650 PD_CobS cobaltochela 98.3 1.2E-07 2.5E-12 91.5 0.7 107 177-285 63-188 (327)
391 PRK13634 cbiO cobalt transport 98.3 3.1E-06 6.8E-11 81.2 10.6 57 228-284 154-215 (290)
392 PRK09087 hypothetical protein; 98.3 4.8E-06 1E-10 77.0 11.3 172 178-369 44-219 (226)
393 PRK11022 dppD dipeptide transp 98.3 3E-06 6.5E-11 82.7 10.5 57 228-284 162-223 (326)
394 TIGR03411 urea_trans_UrtD urea 98.3 4E-06 8.6E-11 78.1 10.9 53 228-280 152-206 (242)
395 PRK15439 autoinducer 2 ABC tra 98.3 2.9E-06 6.3E-11 87.9 10.9 60 225-284 146-209 (510)
396 PRK15064 ABC transporter ATP-b 98.3 3.4E-06 7.3E-11 87.8 11.2 109 172-280 339-499 (530)
397 KOG0062|consensus 98.3 2.2E-06 4.8E-11 85.7 9.1 109 172-280 100-259 (582)
398 PRK13645 cbiO cobalt transport 98.3 3.7E-06 7.9E-11 80.7 10.5 53 228-280 159-215 (289)
399 cd03280 ABC_MutS2 MutS2 homolo 98.3 4.5E-06 9.7E-11 75.6 10.4 103 172-276 21-151 (200)
400 PRK13545 tagH teichoic acids e 98.3 3.2E-06 7E-11 86.5 10.4 113 172-284 44-212 (549)
401 PRK06921 hypothetical protein; 98.3 1.1E-06 2.5E-11 83.1 6.7 81 165-248 104-188 (266)
402 cd03234 ABCG_White The White s 98.3 3.9E-06 8.5E-11 77.4 10.2 49 228-276 152-203 (226)
403 PF00005 ABC_tran: ABC transpo 98.3 1.6E-06 3.6E-11 73.1 7.0 27 173-199 6-32 (137)
404 cd03291 ABCC_CFTR1 The CFTR su 98.3 5.9E-06 1.3E-10 79.0 11.6 109 172-280 57-223 (282)
405 cd03290 ABCC_SUR1_N The SUR do 98.3 5.9E-06 1.3E-10 75.8 11.1 54 228-281 149-207 (218)
406 TIGR03415 ABC_choXWV_ATP choli 98.3 4.4E-06 9.5E-11 83.0 10.8 56 229-284 174-234 (382)
407 PRK10419 nikE nickel transport 98.3 4.9E-06 1.1E-10 78.9 10.6 53 228-280 160-216 (268)
408 PRK09473 oppD oligopeptide tra 98.3 4.4E-06 9.6E-11 81.6 10.6 57 228-284 170-231 (330)
409 PRK10619 histidine/lysine/argi 98.3 5.3E-06 1.1E-10 78.1 10.8 54 228-281 161-217 (257)
410 PF07728 AAA_5: AAA domain (dy 98.3 6.9E-07 1.5E-11 75.8 4.2 70 180-250 1-78 (139)
411 PLN03130 ABC transporter C fam 98.3 4.1E-06 8.9E-11 97.2 11.6 113 172-284 637-808 (1622)
412 PRK08116 hypothetical protein; 98.3 2.1E-06 4.5E-11 81.4 7.7 71 177-249 113-190 (268)
413 COG0593 DnaA ATPase involved i 98.3 3.6E-06 7.8E-11 83.4 9.6 185 177-368 112-309 (408)
414 PRK13649 cbiO cobalt transport 98.3 5.4E-06 1.2E-10 79.1 10.6 53 228-280 154-209 (280)
415 cd03243 ABC_MutS_homologs The 98.3 6.3E-06 1.4E-10 74.8 10.5 109 172-282 23-157 (202)
416 PTZ00265 multidrug resistance 98.3 3.4E-06 7.3E-11 97.0 10.5 62 223-284 583-648 (1466)
417 COG1123 ATPase components of v 98.3 4.4E-06 9.6E-11 85.2 10.2 61 224-284 159-224 (539)
418 PRK15064 ABC transporter ATP-b 98.3 5.1E-06 1.1E-10 86.4 11.0 57 224-280 160-216 (530)
419 PRK13409 putative ATPase RIL; 98.3 4.6E-06 9.9E-11 87.7 10.6 110 172-281 359-519 (590)
420 PRK13641 cbiO cobalt transport 98.3 5.4E-06 1.2E-10 79.5 10.3 57 228-284 154-214 (287)
421 COG4172 ABC-type uncharacteriz 98.3 2.8E-06 6E-11 82.8 8.1 58 224-281 431-492 (534)
422 CHL00081 chlI Mg-protoporyphyr 98.3 8E-06 1.7E-10 79.9 11.4 47 143-202 16-62 (350)
423 PRK10762 D-ribose transporter 98.3 5.6E-06 1.2E-10 85.5 10.9 55 227-281 149-206 (501)
424 PRK11819 putative ABC transpor 98.3 5.8E-06 1.2E-10 86.6 11.1 58 224-281 168-225 (556)
425 PRK10636 putative ABC transpor 98.3 6E-06 1.3E-10 87.7 11.4 113 172-284 332-496 (638)
426 PRK10938 putative molybdenum t 98.3 5.2E-06 1.1E-10 85.5 10.6 53 228-280 144-199 (490)
427 COG4586 ABC-type uncharacteriz 98.3 8.2E-06 1.8E-10 75.9 10.6 60 225-284 162-226 (325)
428 TIGR02770 nickel_nikD nickel i 98.2 7.2E-06 1.6E-10 75.9 10.5 54 228-281 134-191 (230)
429 PHA02244 ATPase-like protein 98.2 2E-06 4.4E-11 84.0 6.9 72 177-250 118-193 (383)
430 KOG0740|consensus 98.2 2.5E-07 5.4E-12 91.7 0.6 73 11-101 290-370 (428)
431 TIGR01978 sufC FeS assembly AT 98.2 8E-06 1.7E-10 76.0 10.6 54 228-281 153-209 (243)
432 PRK03695 vitamin B12-transport 98.2 7.3E-06 1.6E-10 76.8 10.3 52 229-280 136-197 (248)
433 COG4148 ModC ABC-type molybdat 98.2 3.7E-06 8.1E-11 78.4 8.1 57 224-280 133-193 (352)
434 PRK14269 phosphate ABC transpo 98.2 9.8E-06 2.1E-10 75.8 11.2 54 227-280 150-205 (246)
435 PRK14257 phosphate ABC transpo 98.2 6.6E-06 1.4E-10 80.4 10.3 58 227-284 233-293 (329)
436 COG4136 ABC-type uncharacteriz 98.2 4.9E-06 1.1E-10 70.8 8.0 53 224-276 139-195 (213)
437 TIGR03005 ectoine_ehuA ectoine 98.2 7.9E-06 1.7E-10 76.7 10.5 52 229-280 156-211 (252)
438 COG0542 clpA ATP-binding subun 98.2 3.5E-06 7.6E-11 89.3 8.9 104 139-255 165-280 (786)
439 cd01120 RecA-like_NTPases RecA 98.2 3.6E-06 7.8E-11 72.4 7.5 73 181-253 2-101 (165)
440 PLN03073 ABC transporter F fam 98.2 7.3E-06 1.6E-10 87.9 11.2 110 172-281 529-689 (718)
441 cd03278 ABC_SMC_barmotin Barmo 98.2 1.3E-05 2.9E-10 72.5 11.3 46 236-281 134-181 (197)
442 TIGR03345 VI_ClpV1 type VI sec 98.2 1.7E-06 3.7E-11 94.3 6.5 109 145-260 567-690 (852)
443 PRK08939 primosomal protein Dn 98.2 1.2E-06 2.7E-11 84.5 4.8 72 177-250 155-230 (306)
444 TIGR02324 CP_lyasePhnL phospho 98.2 1E-05 2.2E-10 74.5 10.7 52 229-280 159-213 (224)
445 cd03233 ABC_PDR_domain1 The pl 98.2 5.7E-06 1.2E-10 75.1 8.8 93 172-264 27-163 (202)
446 COG1484 DnaC DNA replication p 98.2 1E-06 2.2E-11 82.9 3.9 75 177-252 104-182 (254)
447 cd03227 ABC_Class2 ABC-type Cl 98.2 7.3E-06 1.6E-10 71.7 9.1 102 177-280 20-145 (162)
448 COG0444 DppD ABC-type dipeptid 98.2 6E-06 1.3E-10 78.7 9.1 57 228-284 162-223 (316)
449 TIGR00972 3a0107s01c2 phosphat 98.2 1E-05 2.2E-10 75.6 10.6 53 228-280 153-207 (247)
450 PF07726 AAA_3: ATPase family 98.2 1.3E-07 2.7E-12 78.7 -2.1 98 180-285 1-113 (131)
451 PRK14247 phosphate ABC transpo 98.2 1.1E-05 2.5E-10 75.5 10.8 53 228-280 155-209 (250)
452 PRK11288 araG L-arabinose tran 98.2 1E-05 2.3E-10 83.6 11.5 57 225-281 146-205 (501)
453 TIGR03689 pup_AAA proteasome A 98.2 2.3E-07 4.9E-12 94.9 -0.8 82 4-101 326-409 (512)
454 PF13401 AAA_22: AAA domain; P 98.2 4.9E-06 1.1E-10 69.5 7.4 74 177-250 3-100 (131)
455 PRK10418 nikD nickel transport 98.2 1.1E-05 2.5E-10 75.7 10.7 54 227-280 148-205 (254)
456 COG4598 HisP ABC-type histidin 98.2 9.1E-06 2E-10 71.2 9.1 55 223-277 156-213 (256)
457 COG1101 PhnK ABC-type uncharac 98.2 9.2E-06 2E-10 73.2 9.4 50 229-278 158-211 (263)
458 PF06068 TIP49: TIP49 C-termin 98.2 2.9E-06 6.4E-11 82.4 6.6 80 145-233 25-106 (398)
459 PRK10982 galactose/methyl gala 98.2 1.1E-05 2.3E-10 83.2 11.2 54 227-280 142-198 (491)
460 PF01695 IstB_IS21: IstB-like 98.2 9.6E-07 2.1E-11 78.6 3.0 73 176-250 45-121 (178)
461 PRK10261 glutathione transport 98.2 1E-05 2.2E-10 85.8 11.2 57 228-284 472-533 (623)
462 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 1.1E-05 2.5E-10 84.3 11.3 109 172-280 342-504 (552)
463 CHL00095 clpC Clp protease ATP 98.2 3.2E-06 6.9E-11 92.2 7.4 111 145-262 510-635 (821)
464 PRK13549 xylose transporter AT 98.2 1.1E-05 2.3E-10 83.5 10.8 54 228-281 152-208 (506)
465 PRK14273 phosphate ABC transpo 98.2 1.3E-05 2.8E-10 75.3 10.4 52 229-280 160-213 (254)
466 PRK11819 putative ABC transpor 98.2 1.3E-05 2.8E-10 83.9 11.5 109 172-280 344-506 (556)
467 TIGR01187 potA spermidine/putr 98.2 8.7E-06 1.9E-10 79.5 9.4 58 227-284 108-170 (325)
468 PRK11147 ABC transporter ATPas 98.2 1.2E-05 2.6E-10 85.5 11.1 57 225-281 162-218 (635)
469 PLN03073 ABC transporter F fam 98.2 8.5E-06 1.8E-10 87.4 10.0 56 226-281 351-406 (718)
470 PRK11701 phnK phosphonate C-P 98.2 1.3E-05 2.9E-10 75.4 10.3 53 228-280 160-216 (258)
471 PRK13631 cbiO cobalt transport 98.2 1.4E-05 3E-10 77.9 10.6 57 228-284 185-245 (320)
472 PRK15093 antimicrobial peptide 98.2 1.5E-05 3.2E-10 78.0 10.9 57 228-284 167-228 (330)
473 PF13173 AAA_14: AAA domain 98.1 3.1E-06 6.7E-11 71.0 5.2 72 178-251 2-75 (128)
474 COG0396 sufC Cysteine desulfur 98.1 2.1E-05 4.5E-10 71.5 10.8 44 233-276 158-204 (251)
475 PRK11147 ABC transporter ATPas 98.1 1.3E-05 2.9E-10 85.2 11.2 110 172-281 339-502 (635)
476 COG0714 MoxR-like ATPases [Gen 98.1 1.6E-06 3.4E-11 84.8 3.9 84 176-264 41-138 (329)
477 KOG0064|consensus 98.1 3.6E-06 7.8E-11 84.4 6.4 53 226-278 619-671 (728)
478 PRK09700 D-allose transporter 98.1 1.3E-05 2.7E-10 83.1 10.8 55 227-281 153-210 (510)
479 PRK09580 sufC cysteine desulfu 98.1 1.6E-05 3.4E-10 74.3 10.5 56 226-281 152-210 (248)
480 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 1.3E-05 2.8E-10 83.8 10.7 58 224-281 166-223 (552)
481 TIGR02030 BchI-ChlI magnesium 98.1 1.4E-05 3.1E-10 78.0 10.3 48 142-202 2-49 (337)
482 PRK14246 phosphate ABC transpo 98.1 1.8E-05 3.9E-10 74.6 10.6 51 229-279 163-215 (257)
483 PRK09984 phosphonate/organopho 98.1 1.7E-05 3.6E-10 74.9 10.5 51 229-279 162-216 (262)
484 PRK13651 cobalt transporter AT 98.1 1E-05 2.3E-10 78.2 9.1 57 228-284 174-234 (305)
485 TIGR00957 MRP_assoc_pro multi 98.1 1.3E-05 2.7E-10 93.0 11.2 113 172-284 658-830 (1522)
486 CHL00131 ycf16 sulfate ABC tra 98.1 1.9E-05 4.1E-10 74.0 10.5 54 227-280 159-215 (252)
487 cd03260 ABC_PstB_phosphate_tra 98.1 1.8E-05 3.9E-10 73.0 10.1 52 229-280 151-204 (227)
488 COG0488 Uup ATPase components 98.1 1.7E-05 3.7E-10 81.8 10.9 109 172-280 342-500 (530)
489 TIGR02323 CP_lyasePhnK phospho 98.1 2E-05 4.3E-10 73.9 10.6 53 228-280 157-213 (253)
490 PRK14251 phosphate ABC transpo 98.1 2E-05 4.4E-10 73.8 10.6 53 229-281 157-211 (251)
491 PRK14242 phosphate transporter 98.1 1.9E-05 4.2E-10 74.0 10.4 53 228-280 158-212 (253)
492 COG0488 Uup ATPase components 98.1 2.3E-05 5E-10 80.9 11.7 58 223-280 157-214 (530)
493 PRK10636 putative ABC transpor 98.1 2E-05 4.4E-10 83.8 11.5 56 225-280 155-210 (638)
494 COG0410 LivF ABC-type branched 98.1 2.4E-05 5.3E-10 71.2 10.3 49 228-276 145-197 (237)
495 smart00534 MUTSac ATPase domai 98.1 2.3E-05 5E-10 70.1 10.2 97 181-278 2-124 (185)
496 PRK10535 macrolide transporter 98.1 1.8E-05 3.9E-10 84.4 10.7 56 229-284 154-212 (648)
497 PRK14272 phosphate ABC transpo 98.1 2.6E-05 5.7E-10 73.1 10.7 54 228-281 157-212 (252)
498 PRK14256 phosphate ABC transpo 98.1 2.7E-05 5.8E-10 73.1 10.7 52 229-280 158-211 (252)
499 PRK13547 hmuV hemin importer A 98.1 2.6E-05 5.7E-10 74.1 10.7 52 229-280 155-219 (272)
500 COG4175 ProV ABC-type proline/ 98.1 1.5E-05 3.2E-10 75.7 8.6 52 226-277 171-226 (386)
No 1
>KOG0733|consensus
Probab=100.00 E-value=2.8e-58 Score=454.38 Aligned_cols=349 Identities=23% Similarity=0.361 Sum_probs=287.6
Q ss_pred eeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccCCcccchHHHHHHhhc
Q psy11689 12 VLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKLNEEVELSENVQREEE 84 (390)
Q Consensus 12 ~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t~ 84 (390)
|||||+|||||++|+||+| +|||| .+.+|+ +..|.+||.+ ++++.++|+ ++||++|.
T Consensus 330 VlVIgATnRPDslDpaLRR--------------aGRFdrEI~l~vP~-e~aR~~IL~~~~~~lrl~g~~d~-~qlA~lTP 393 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRR--------------AGRFDREICLGVPS-ETAREEILRIICRGLRLSGDFDF-KQLAKLTP 393 (802)
T ss_pred eEEEecCCCCcccCHHHhc--------------cccccceeeecCCc-hHHHHHHHHHHHhhCCCCCCcCH-HHHHhcCC
Confidence 9999999999999999999 99999 555666 8899999988 789999999 99999999
Q ss_pred CCccccccccccccchhhhcCCCC--------CC---C-------CCC--C-----------------------------
Q psy11689 85 GIAGENLQRGGGEEGIELREGGQR--------NG---G-------EGG--I----------------------------- 115 (390)
Q Consensus 85 G~~g~~l~~~~~ea~~~~~~~~~~--------~~---~-------~~~--~----------------------------- 115 (390)
||+|+||.++|.+|++.+..+... .. + ... +
T Consensus 394 GfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~ 473 (802)
T KOG0733|consen 394 GFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSK 473 (802)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcCh
Confidence 999999999999999764321100 00 0 000 0
Q ss_pred ------------------CchhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCC
Q psy11689 116 ------------------GLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPK 177 (390)
Q Consensus 116 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (390)
.+.+..+|+++...|++.|+ |||++++++.+|+.++.+|.++|+.|+.+|+..
T Consensus 474 E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~---------dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~ 544 (802)
T KOG0733|consen 474 ELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWD---------DIGALEEVRLELNMAILAPIKRPDLFKALGIDA 544 (802)
T ss_pred HHhccceecHHHHHHHHHhcCcchhcccceecCCCChh---------hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC
Confidence 02344678888899999999 999999999999999999999999999999999
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH-
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE- 256 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~- 256 (390)
|.||||+||||||||.||+|+|++++.+|+.+.+++++++|+|++|..++.+|++|+.+.||||||||+|++++.|...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred -HHHHHhhcCCCcEEEec---cCHHHHHhcCchhHHHhHHH--------hhhhcCCchhHHHhhc-ccccccCCCCCCCC
Q psy11689 257 -QTADNAKKPRIPRTNGG---YREQTADTANKPRIQRTKRE--------YREQTADTAHKTRISR-TNRGYREKTADTAN 323 (390)
Q Consensus 257 -~~~~~~~~~~~~~i~~~---~~~~~i~~t~~~~~~r~~~~--------~l~~l~~~~~r~~I~~-~n~~~r~~~~~~vd 323 (390)
.....+.+..++.+.+. ..+++|++||||+++.+.+. +...+|...+|..|+. ...-.+....+++|
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd 704 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD 704 (802)
T ss_pred chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC
Confidence 23344455555554443 45678999999998644442 2334667888888873 22335566688999
Q ss_pred cchhhhcCC--CCCCCcHHHHHHHHHHHHHHHHccc------------c----ccChhhhhhhHHHHhcCccccccCCCc
Q psy11689 324 KPRIPRTNR--GYREYSAQNANTANKPRIQRTKREY------------R----EQTADTANKPRIQRIGNLSQRNRSSPK 385 (390)
Q Consensus 324 l~~la~~t~--gfs~~gaDL~~l~~~A~~~a~~r~~------------~----~i~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
|+.||+.+. ||+ ||||..||++|.+.|.++.. . .+|+.||..++-+.--+.++++|.-|.
T Consensus 705 l~eia~~~~c~gft--GADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd 782 (802)
T KOG0733|consen 705 LDEIARNTKCEGFT--GADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYD 782 (802)
T ss_pred HHHHhhcccccCCc--hhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHH
Confidence 999998777 999 99999999999999987731 1 256779999988888888888876665
Q ss_pred cc
Q psy11689 386 KV 387 (390)
Q Consensus 386 ~~ 387 (390)
+.
T Consensus 783 ~l 784 (802)
T KOG0733|consen 783 RL 784 (802)
T ss_pred HH
Confidence 44
No 2
>KOG0730|consensus
Probab=100.00 E-value=5.8e-55 Score=436.42 Aligned_cols=349 Identities=23% Similarity=0.387 Sum_probs=292.1
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
-+++|+++|||++++|++++| |||+ +|.+|. ..+|++|+.+ |+..+++++ +.+|..
T Consensus 319 ~~vivl~atnrp~sld~alRR---------------gRfd~ev~IgiP~-~~~RldIl~~l~k~~~~~~~~~l-~~iA~~ 381 (693)
T KOG0730|consen 319 AKVIVLAATNRPDSLDPALRR---------------GRFDREVEIGIPG-SDGRLDILRVLTKKMNLLSDVDL-EDIAVS 381 (693)
T ss_pred CcEEEEEecCCccccChhhhc---------------CCCcceeeecCCC-chhHHHHHHHHHHhcCCcchhhH-HHHHHH
Confidence 378999999999999999885 8899 777777 8999999987 677788999 999999
Q ss_pred hcCCccccccccccccchhhhcCCCCCCCCCCCCchhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhc
Q psy11689 83 EEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEW 162 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~ 162 (390)
|.||+|+||.++|.+++.........++..+.....+...|+...+.++++|+ ||||++++|.+|++.+.+
T Consensus 382 thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~---------dIGGlE~lK~elq~~V~~ 452 (693)
T KOG0730|consen 382 THGYVGADLAALCREASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWD---------DIGGLEELKRELQQAVEW 452 (693)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChh---------hccCHHHHHHHHHHHHhh
Confidence 99999999999999999886554333333344456677788888899999999 999999999999999999
Q ss_pred cccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEE
Q psy11689 163 PFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILF 242 (390)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~ 242 (390)
|.++++.|.++++.++++||+|||||||||++|+++|++++.+|+.+.+++++++|+|++|+.++++|..|+...|||||
T Consensus 453 p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiF 532 (693)
T KOG0730|consen 453 PLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIF 532 (693)
T ss_pred hhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCChhhHHHH--HHHhhcCCCcEEE---eccCHHHHHhcCchhHHHhHHHh-----h---hhcCCchhHHHhhc
Q psy11689 243 IDEIERTYNCEYREQT--ADNAKKPRIPRTN---GGYREQTADTANKPRIQRTKREY-----R---EQTADTAHKTRISR 309 (390)
Q Consensus 243 lDEid~~l~~r~~~~~--~~~~~~~~~~~i~---~~~~~~~i~~t~~~~~~r~~~~~-----l---~~l~~~~~r~~I~~ 309 (390)
|||+|++...|+.+.. .+.+.+..++.+. ...++.++++||||+.+.+.+.. . ..+|+...|..|+.
T Consensus 533 fDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 533 FDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred hhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHH
Confidence 9999999998853322 3333333333332 23567789999999886444432 1 12556777888853
Q ss_pred ccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc--ccccChhhhhhhHHHHhcCccccccCCCcc
Q psy11689 310 TNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE--YREQTADTANKPRIQRIGNLSQRNRSSPKK 386 (390)
Q Consensus 310 ~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
. ..+..+ .+++|+.+||+.|+||| ||||.++|++|++.|+++. ...|+.+||.++.-..--+++....--|++
T Consensus 613 ~--~~kkmp~~~~vdl~~La~~T~g~S--GAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~ 688 (693)
T KOG0730|consen 613 Q--CAKKMPFSEDVDLEELAQATEGYS--GAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYED 688 (693)
T ss_pred H--HHhcCCCCccccHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 3 223333 66799999999999999 9999999999999999985 568999999999988888888877766666
Q ss_pred cc
Q psy11689 387 VS 388 (390)
Q Consensus 387 ~~ 388 (390)
|.
T Consensus 689 fa 690 (693)
T KOG0730|consen 689 FA 690 (693)
T ss_pred Hh
Confidence 54
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=333.36 Aligned_cols=237 Identities=25% Similarity=0.356 Sum_probs=185.0
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
+..++.||||++++++++++++++|+++|+.|..+|+.||+|||||||||||||.||+|+|++.++.|+.+.++++..+|
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY 225 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY 225 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence 34444499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH------HHHHhhcCC--CcEEEeccCHHHHHhcCchhHH--
Q psy11689 219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ------TADNAKKPR--IPRTNGGYREQTADTANKPRIQ-- 288 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~------~~~~~~~~~--~~~i~~~~~~~~i~~t~~~~~~-- 288 (390)
.|++.+.++++|+.|+.+.||||||||+|++..+|++.. ++..+..+. +--......+.+|++|||++++
T Consensus 226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP 305 (406)
T COG1222 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP 305 (406)
T ss_pred hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence 999999999999999999999999999999998886542 112111110 0000111223345555554443
Q ss_pred ---HhHHHhhhh---cCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689 289 ---RTKREYREQ---TADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT 361 (390)
Q Consensus 289 ---r~~~~~l~~---l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~ 361 (390)
|+.++.+.. +|+..+|..| ...+.+.+. .+++||+.||+.|+||| ||||+++|.+|.+.|.++.+..+|
T Consensus 306 ALLRPGR~DRkIEfplPd~~gR~~I--l~IHtrkM~l~~dvd~e~la~~~~g~s--GAdlkaictEAGm~AiR~~R~~Vt 381 (406)
T COG1222 306 ALLRPGRFDRKIEFPLPDEEGRAEI--LKIHTRKMNLADDVDLELLARLTEGFS--GADLKAICTEAGMFAIRERRDEVT 381 (406)
T ss_pred hhcCCCcccceeecCCCCHHHHHHH--HHHHhhhccCccCcCHHHHHHhcCCCc--hHHHHHHHHHHhHHHHHhccCeec
Confidence 222222111 3344555555 222333333 67899999999999999 999999999999999999999999
Q ss_pred hhhhhhhHHHHhcCcccc
Q psy11689 362 ADTANKPRIQRIGNLSQR 379 (390)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ 379 (390)
|+||.+|+.+...+-.+.
T Consensus 382 ~~DF~~Av~KV~~~~~~~ 399 (406)
T COG1222 382 MEDFLKAVEKVVKKKKKL 399 (406)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 999999998877654433
No 4
>KOG0736|consensus
Probab=100.00 E-value=1.1e-40 Score=337.04 Aligned_cols=335 Identities=21% Similarity=0.317 Sum_probs=251.6
Q ss_pred hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccceeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
=|=.++++++|++-+.+-+-++. -.+++|++|. .+++|.+||++ ..++.+|.+ +.+|+.
T Consensus 530 ~~~~~ivv~t~~s~~~lp~~i~~---------------~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~-k~~a~~ 593 (953)
T KOG0736|consen 530 SCPPVIVVATTSSIEDLPADIQS---------------LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNL-KQLARK 593 (953)
T ss_pred CCCceEEEEeccccccCCHHHHH---------------hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHH-HHHHHh
Confidence 34567888888875555444443 4445677777 58899999998 568899999 889999
Q ss_pred hcCCccccccccccccchhh---hcCCC------CCCCCCC----CC-----chh--------hHhhhcccccCcccccc
Q psy11689 83 EEGIAGENLQRGGGEEGIEL---REGGQ------RNGGEGG----IG-----LNE--------RVQRIGEGREERRDWEG 136 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~---~~~~~------~~~~~~~----~~-----~~~--------~~~~~~~~~~~~~~~~~ 136 (390)
|.||+..++.++........ ..... ....... .. +.+ ...-.+.++.|++.|+
T Consensus 594 t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~Wd- 672 (953)
T KOG0736|consen 594 TSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWD- 672 (953)
T ss_pred cCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchh-
Confidence 99999999988765542111 11000 0000000 00 111 1223356678999999
Q ss_pred ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC
Q psy11689 137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS 216 (390)
Q Consensus 137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~ 216 (390)
||||++++|.++.+.+..|+++++.|. .+.++..|||||||||||||.+|||+|.++...|+.+.++++++
T Consensus 673 --------DVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 673 --------DVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred --------cccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 999999999999999999999999997 46788999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----HHHHHHhhcCCCcEEE-----eccCHHHHHhcCchhH
Q psy11689 217 PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----EQTADNAKKPRIPRTN-----GGYREQTADTANKPRI 287 (390)
Q Consensus 217 ~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----~~~~~~~~~~~~~~i~-----~~~~~~~i~~t~~~~~ 287 (390)
+|+|++|++++++|++|+..+|||||+||+|++.+.|.. ..+++.+....+..+. .+..+++|++||||++
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 999999999999999999999999999999999998753 3445555443333222 3456888999999999
Q ss_pred HHhHHHhhhhcC---------CchhHHHhh-cccccccCCCCCCCCcchhhhcCC-CCCCCcHHHHHHHHHHHHHHHHcc
Q psy11689 288 QRTKREYREQTA---------DTAHKTRIS-RTNRGYREKTADTANKPRIPRTNR-GYREYSAQNANTANKPRIQRTKRE 356 (390)
Q Consensus 288 ~r~~~~~l~~l~---------~~~~r~~I~-~~n~~~r~~~~~~vdl~~la~~t~-gfs~~gaDL~~l~~~A~~~a~~r~ 356 (390)
+.+.+.....++ +...+..|+ |..+ +-+..++||+.+||++.+ .|+ |||+-+||..|.+.|+.|.
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr--kFkLdedVdL~eiAk~cp~~~T--GADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR--KFKLDEDVDLVEIAKKCPPNMT--GADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHH--HccCCCCcCHHHHHhhCCcCCc--hhHHHHHHHHHHHHHHHHH
Confidence 766665544444 233333332 3322 234578899999998765 899 9999999999999999882
Q ss_pred -----------------ccccChhhhhhhHHHH
Q psy11689 357 -----------------YREQTADTANKPRIQR 372 (390)
Q Consensus 357 -----------------~~~i~~~~~~~~~~~~ 372 (390)
.-.++++||-++.-+.
T Consensus 900 i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l 932 (953)
T KOG0736|consen 900 IHDIESGTISEEEQESSSVRVTMEDFLKSAKRL 932 (953)
T ss_pred HHHhhhccccccccCCceEEEEHHHHHHHHHhc
Confidence 1257888888876543
No 5
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-40 Score=356.02 Aligned_cols=352 Identities=22% Similarity=0.328 Sum_probs=265.0
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
.++++++|+||+++.+|++++| +|||+ .|.+|. +.++|.+|+.. +.+.+++++ +.+|+.
T Consensus 312 ~~~vivI~atn~~~~ld~al~r--------------~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l-~~la~~ 376 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRR--------------PGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDL-DKLAEV 376 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhC--------------chhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCH-HHHHHh
Confidence 4678999999999999999999 99999 555555 37789999986 557778899 889999
Q ss_pred hcCCccccccccccccchhhhcCCCC----CCCCC--------CCCc------------hhhHhhhcccccCcccccccc
Q psy11689 83 EEGIAGENLQRGGGEEGIELREGGQR----NGGEG--------GIGL------------NERVQRIGEGREERRDWEGEE 138 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~~~~~~----~~~~~--------~~~~------------~~~~~~~~~~~~~~~~~~~~~ 138 (390)
|.||+|+++..+|.+++......... ..... ...+ .+...+....+.+.+.|+
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~--- 453 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWS--- 453 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchh---
Confidence 99999999999999888764322110 00000 0000 011122223334556666
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
+++|++.+++.+.+.+.+++.+++.|..+++.++.++|||||||||||++|+++|.+++.+++.++++++.+.|
T Consensus 454 ------di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 454 ------DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred ------hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---HHHHHhhcCCCcE---EEeccCHHHHHhcCchhHHHhHH
Q psy11689 219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---QTADNAKKPRIPR---TNGGYREQTADTANKPRIQRTKR 292 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---~~~~~~~~~~~~~---i~~~~~~~~i~~t~~~~~~r~~~ 292 (390)
+|++++.++.+|..|+..+|+||||||+|++++.+... ...+.+.+..++. +....++.+|++||+|+.+.+.+
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~al 607 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPAL 607 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhh
Confidence 99999999999999999999999999999998765321 1111111111111 11234566788899887654333
Q ss_pred H-----h---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc--------
Q psy11689 293 E-----Y---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE-------- 356 (390)
Q Consensus 293 ~-----~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~-------- 356 (390)
. . ...+|+...|..|+.... ......+++|+..+|+.|+||+ |+||+++|++|++.|.++.
T Consensus 608 lRpgRfd~~i~v~~Pd~~~R~~i~~~~~-~~~~~~~~~~l~~la~~t~g~s--gadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 608 LRPGRFDRLILVPPPDEEARKEIFKIHT-RSMPLAEDVDLEELAEMTEGYT--GADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred cCCCccceEEEeCCcCHHHHHHHHHHHh-cCCCCCccCCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 2 1 112556777887763322 1223356799999999999999 9999999999999998852
Q ss_pred ----------ccccChhhhhhhHHHHhcCccccccCCCccc
Q psy11689 357 ----------YREQTADTANKPRIQRIGNLSQRNRSSPKKV 387 (390)
Q Consensus 357 ----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
...++++||.+++-+..-+.++.+...|+++
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~ 725 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERL 725 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 1268999999999877777766655544443
No 6
>KOG0741|consensus
Probab=100.00 E-value=6.7e-40 Score=319.68 Aligned_cols=269 Identities=17% Similarity=0.199 Sum_probs=209.1
Q ss_pred cchhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc--------ccCCc
Q psy11689 3 VDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF--------TKLNE 71 (390)
Q Consensus 3 ~~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~--------~~~~~ 71 (390)
+|+|+-.|||||||||||+|+||+||+| ||||+ +|.||+ +++|.|||.| ..++.
T Consensus 361 mDGVeqLNNILVIGMTNR~DlIDEALLR--------------PGRlEVqmEIsLPD-E~gRlQIl~IHT~rMre~~~l~~ 425 (744)
T KOG0741|consen 361 MDGVEQLNNILVIGMTNRKDLIDEALLR--------------PGRLEVQMEISLPD-EKGRLQILKIHTKRMRENNKLSA 425 (744)
T ss_pred cccHHhhhcEEEEeccCchhhHHHHhcC--------------CCceEEEEEEeCCC-ccCceEEEEhhhhhhhhcCCCCC
Confidence 6999999999999999999999999999 99999 999999 9999999999 45889
Q ss_pred ccchHHHHHHhhcCCccccccccccccchhhhcCCCCCCCCCCCCchhhHh-----------hhcccccCccccccccCC
Q psy11689 72 EVELSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQ-----------RIGEGREERRDWEGEEEG 140 (390)
Q Consensus 72 ~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 140 (390)
|||+ ++||++|++|+|++|+++++.|...+..+.-... .....++... ..+.+-.|.+...+++-.
T Consensus 426 dVdl-~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~ 502 (744)
T KOG0741|consen 426 DVDL-KELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLE 502 (744)
T ss_pred CcCH-HHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHH
Confidence 9999 8999999999999999997777665544322111 1111111111 111112222222110000
Q ss_pred CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689 141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG 220 (390)
Q Consensus 141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g 220 (390)
-.-.+|+........+.+.....+..+.++....+-.++||+||||+|||+||..+|..+++||+++.+++-+.++.+
T Consensus 503 --~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sE 580 (744)
T KOG0741|consen 503 --RFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSE 580 (744)
T ss_pred --HHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccH
Confidence 001244444555556666666666777777777888999999999999999999999999999999998888777766
Q ss_pred hHH-HHHHHHHHHHHhcCCeEEEEcCCCCCCC-----hhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhH
Q psy11689 221 EAE-QNVTQLFHRARLAAPAILFIDEIERTYN-----CEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK 291 (390)
Q Consensus 221 ~~~-~~i~~~f~~A~~~~p~il~lDEid~~l~-----~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~ 291 (390)
... ..++.+|.+|+++.-+||++|+++++++ +|+++.+.+.+..+.....+.+|++++++||++.++++.+
T Consensus 581 saKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m 657 (744)
T KOG0741|consen 581 SAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEM 657 (744)
T ss_pred HHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHc
Confidence 544 6799999999999999999999999985 7999999999988888888999999999999998886543
No 7
>KOG0735|consensus
Probab=100.00 E-value=8.7e-40 Score=327.82 Aligned_cols=335 Identities=22% Similarity=0.326 Sum_probs=249.6
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCCCCccCccccc-c-------ccCCcccchHHHHH
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPTAPQGRETELP-F-------TKLNEEVELSENVQ 80 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~~~~~r~~~l~-~-------~~~~~~v~l~~~la 80 (390)
|-++++.-+++.. -|+.-.++++..|+|.|+.|++|. .+.||.|...||.++. . +....|.++ ++
T Consensus 529 nqvi~~y~~~~~~---ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~---ls 602 (952)
T KOG0735|consen 529 NQVIKIYLKRNRK---IAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDF---LS 602 (952)
T ss_pred HHHHHHHHccCcE---EEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHH---HH
Confidence 4444444444332 133334456667999999999999 9999997777665553 3 223344444 99
Q ss_pred HhhcCCccccccccccccchh-hhcCCCCCCCC---------CCCCchhhHhhhcccccC-ccccccccCCCCCCCccCh
Q psy11689 81 REEEGIAGENLQRGGGEEGIE-LREGGQRNGGE---------GGIGLNERVQRIGEGREE-RRDWEGEEEGAFVPELGGL 149 (390)
Q Consensus 81 ~~t~G~~g~~l~~~~~ea~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~g~ 149 (390)
.+|+||..-|+.-.+ +.+++ +......+... +--.+.+.++|......+ ++.|+ ||||+
T Consensus 603 ~~TEGy~~~DL~ifV-eRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~---------digg~ 672 (952)
T KOG0735|consen 603 VKTEGYLATDLVIFV-ERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWE---------DIGGL 672 (952)
T ss_pred HhcCCccchhHHHHH-HHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCce---------ecccH
Confidence 999999999998874 44444 33111111111 001233444555544433 37888 99999
Q ss_pred HHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHH
Q psy11689 150 KGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229 (390)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~ 229 (390)
.++++.+++.+++|.+||..|.+..++.+.|+|||||||||||+||.++|..+++.|+.+.+++++++|.|++|++++.+
T Consensus 673 ~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~l 752 (952)
T KOG0735|consen 673 FEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDL 752 (952)
T ss_pred HHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEcCCCCCCChhhHHH--HHHHhhcCCCcEEEec---cCHHHHHhcCchhHHHhHHHhhhh-------
Q psy11689 230 FHRARLAAPAILFIDEIERTYNCEYREQ--TADNAKKPRIPRTNGG---YREQTADTANKPRIQRTKREYREQ------- 297 (390)
Q Consensus 230 f~~A~~~~p~il~lDEid~~l~~r~~~~--~~~~~~~~~~~~i~~~---~~~~~i~~t~~~~~~r~~~~~l~~------- 297 (390)
|.+|+..+|||+|+||+|++.++|.... ..+.+.+..+|.+.+. .++.++++|+||+++.+.+..-..
T Consensus 753 F~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C 832 (952)
T KOG0735|consen 753 FERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYC 832 (952)
T ss_pred HHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeC
Confidence 9999999999999999999999886543 3344555555554444 345678999999987666544333
Q ss_pred -cCCchhHHHhhccccccc-CCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhh
Q psy11689 298 -TADTAHKTRISRTNRGYR-EKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADT 364 (390)
Q Consensus 298 -l~~~~~r~~I~~~n~~~r-~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~ 364 (390)
+|+..+|..|+ +.... ....+++|++.+|..|+||+ ||||..|+..|.+.|+.+-....+++.
T Consensus 833 ~~P~~~eRl~il--~~ls~s~~~~~~vdl~~~a~~T~g~t--gADlq~ll~~A~l~avh~~l~~~~~~~ 897 (952)
T KOG0735|consen 833 PLPDEPERLEIL--QVLSNSLLKDTDVDLECLAQKTDGFT--GADLQSLLYNAQLAAVHEILKREDEEG 897 (952)
T ss_pred CCCCcHHHHHHH--HHHhhccCCccccchHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45677787774 22222 33467899999999999999 999999999999999877444333333
No 8
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-38 Score=322.17 Aligned_cols=333 Identities=23% Similarity=0.312 Sum_probs=261.1
Q ss_pred eeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhhcC
Q psy11689 12 VLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREEEG 85 (390)
Q Consensus 12 ~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G 85 (390)
++++++||+++.+|+++++ ||||+ .+.++. +.+.|.+++.+ +.+..++++ +.+|..+.|
T Consensus 119 v~~~~~~~~~~~~~~a~~~--------------~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~-~~~a~~~~~ 183 (494)
T COG0464 119 VIVIGATNRPDGLDPAKRR--------------PGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTG-KTLAARTVG 183 (494)
T ss_pred eEEEeecCCccccChhHhC--------------ccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccH-HHHHHhcCC
Confidence 8999999999999999999 99999 666555 36667777776 566678888 889999999
Q ss_pred CccccccccccccchhhhcCC-CCCCCCCCCCch---hhHhh-----hcccccCccccccccCCCCCCCccChHHHHHHH
Q psy11689 86 IAGENLQRGGGEEGIELREGG-QRNGGEGGIGLN---ERVQR-----IGEGREERRDWEGEEEGAFVPELGGLKGVRALM 156 (390)
Q Consensus 86 ~~g~~l~~~~~ea~~~~~~~~-~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l 156 (390)
++++++..++.++......+. ............ ..... ......+.+.|. +++|++..++.+
T Consensus 184 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~---------diggl~~~k~~l 254 (494)
T COG0464 184 KSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLD---------DIGGLEEAKEEL 254 (494)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCCCCccee---------hhhcHHHHHHHH
Confidence 999999999988877643332 111111111111 11111 223345667777 999999999999
Q ss_pred HHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhc
Q psy11689 157 EKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLA 236 (390)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~ 236 (390)
++.+.+++.+++.|.+.++.++.++|||||||||||+||+++|.+++.+|+.++.+++.++|+|+++++++.+|..|+..
T Consensus 255 ~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~ 334 (494)
T COG0464 255 KEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKL 334 (494)
T ss_pred HHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCChhhHHH------HHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHh--------hhhcCCch
Q psy11689 237 APAILFIDEIERTYNCEYREQ------TADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREY--------REQTADTA 302 (390)
Q Consensus 237 ~p~il~lDEid~~l~~r~~~~------~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~--------l~~l~~~~ 302 (390)
+|||||+||+|+++..+.... ....+.. .+..+....++.++++||+|+...+.+.. ...+|+..
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~-~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLT-ELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHH-HhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 999999999999998875321 2111111 11112334456678999998876543322 11255677
Q ss_pred hHHHhhcccccccCC-CCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc-ccccChhhhhhhHHH
Q psy11689 303 HKTRISRTNRGYREK-TADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE-YREQTADTANKPRIQ 371 (390)
Q Consensus 303 ~r~~I~~~n~~~r~~-~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~-~~~i~~~~~~~~~~~ 371 (390)
.|..|+......... ...++|+..+++.|+||+ |+||+.+|.+|++.+.... ...+|++||..+.-+
T Consensus 414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~s--gadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYS--GADIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 777776544443333 367899999999999999 9999999999999999998 779999999999876
No 9
>KOG0726|consensus
Probab=100.00 E-value=7e-34 Score=260.47 Aligned_cols=214 Identities=25% Similarity=0.351 Sum_probs=188.1
Q ss_pred cCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc
Q psy11689 138 EEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP 217 (390)
Q Consensus 138 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~ 217 (390)
-+.-++.|+||++.+.+++++.+++|+.+|+.|+.+|+.+|.+|+|||+||||||.||+|+|++....|+.+.++++..+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 34556669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHhhhh
Q psy11689 218 YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQ 297 (390)
Q Consensus 218 ~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~ 297 (390)
|.|++.+.++++|..|..+.|+|+|+||||++..+|++... -..++++|++++++++
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~S-----------------------ggerEiQrtmLELLNQ 315 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNS-----------------------GGEREIQRTMLELLNQ 315 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCC-----------------------ccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988865431 1235789999999999
Q ss_pred cCCchh---HHHhhcccccccCC-----------------------------------CCCCCCcchhhhcCCCCCCCcH
Q psy11689 298 TADTAH---KTRISRTNRGYREK-----------------------------------TADTANKPRIPRTNRGYREYSA 339 (390)
Q Consensus 298 l~~~~~---r~~I~~~n~~~r~~-----------------------------------~~~~vdl~~la~~t~gfs~~ga 339 (390)
+++++. .++|++||+..... +..+|+++.+....+.+| ||
T Consensus 316 ldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlS--GA 393 (440)
T KOG0726|consen 316 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLS--GA 393 (440)
T ss_pred ccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccc--cc
Confidence 887544 47788888533211 135888999988889999 99
Q ss_pred HHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCc
Q psy11689 340 QNANTANKPRIQRTKREYREQTADTANKPRIQRIGNL 376 (390)
Q Consensus 340 DL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~ 376 (390)
||+++|.+|.+.|.+..+-.++++||.++..+..+.-
T Consensus 394 dIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 394 DIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred cHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 9999999999999999888999999999998877643
No 10
>KOG0733|consensus
Probab=100.00 E-value=5.8e-34 Score=282.30 Aligned_cols=212 Identities=23% Similarity=0.341 Sum_probs=173.9
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~ 219 (390)
...|.|+||++....++.+.+.. +++|+.|..+|+.|++|||||||||||||+||+++|++++.||+.+..+++.+++.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 34455999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH--HHHHhhcCC------CcEE-EeccCHHHHHhcCchhHHHh
Q psy11689 220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ--TADNAKKPR------IPRT-NGGYREQTADTANKPRIQRT 290 (390)
Q Consensus 220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~--~~~~~~~~~------~~~i-~~~~~~~~i~~t~~~~~~r~ 290 (390)
|++|++++++|..|+...|||+||||||++.++|...+ +.+.+.... +... ..+.++.+|++||||+.+.+
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 99999999999999999999999999999999885432 222222211 1111 12566888999999988655
Q ss_pred HHHhhhh--------cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689 291 KREYREQ--------TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR 355 (390)
Q Consensus 291 ~~~~l~~--------l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r 355 (390)
.+..-.. .|+...|..|+.+-+ .......++|+.+||++|+||+ ||||++||.+|++.|+.|
T Consensus 345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~-~~lrl~g~~d~~qlA~lTPGfV--GADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 345 ALRRAGRFDREICLGVPSETAREEILRIIC-RGLRLSGDFDFKQLAKLTPGFV--GADLMALCREAAFVAIKR 414 (802)
T ss_pred HHhccccccceeeecCCchHHHHHHHHHHH-hhCCCCCCcCHHHHHhcCCCcc--chhHHHHHHHHHHHHHHH
Confidence 5433333 445666666643222 1234466899999999999999 999999999999999988
No 11
>KOG0727|consensus
Probab=100.00 E-value=1.1e-33 Score=254.74 Aligned_cols=213 Identities=23% Similarity=0.374 Sum_probs=177.5
Q ss_pred cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+.|++++. ||||++-+|+++++++++|+.+.+.|+..|+.||+|+|+|||||||||+|++++|+.....|
T Consensus 147 ~ekpdvsy~---------diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 147 DEKPDVSYA---------DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred CCCCCcccc---------ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 345566666 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchh
Q psy11689 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPR 286 (390)
Q Consensus 207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~ 286 (390)
+.+.++++..+|.|++...++.+|..|+...|+||||||+|++..+|++.++ ..+++
T Consensus 218 irvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqt-----------------------gadre 274 (408)
T KOG0727|consen 218 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQT-----------------------GADRE 274 (408)
T ss_pred eeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccc-----------------------cccHH
Confidence 9999999999999999999999999999999999999999999988876532 12233
Q ss_pred HHHhHHHhhhhcCCch---hHHHhhcccc-----------------------------------cccCCCCCCCCcchhh
Q psy11689 287 IQRTKREYREQTADTA---HKTRISRTNR-----------------------------------GYREKTADTANKPRIP 328 (390)
Q Consensus 287 ~~r~~~~~l~~l~~~~---~r~~I~~~n~-----------------------------------~~r~~~~~~vdl~~la 328 (390)
++|.+++++++++++. +.++|++||+ ..+..+.+++|++.+.
T Consensus 275 vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v 354 (408)
T KOG0727|consen 275 VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLV 354 (408)
T ss_pred HHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHh
Confidence 4444444444433321 2233333332 2223446789999999
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHh
Q psy11689 329 RTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRI 373 (390)
Q Consensus 329 ~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~ 373 (390)
.+.+..| ||||.++|.+|.+.|.+.++-.+.+.||++++-+.+
T Consensus 355 ~rpdkis--~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 355 ARPDKIS--GADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred cCccccc--hhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhc
Confidence 9999999 999999999999999999999999999999996654
No 12
>KOG0652|consensus
Probab=100.00 E-value=2.6e-33 Score=253.38 Aligned_cols=230 Identities=22% Similarity=0.335 Sum_probs=185.4
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
++-.+.||||++.+.+++.+++.+|+.+++.|.++++.+|.|+|+|||||||||.+|++.|.+.+..|.++.++++...|
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 44455699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH------HHHHhhcC--CCcEEEeccCHHHHHhcCchhHHHh
Q psy11689 219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ------TADNAKKP--RIPRTNGGYREQTADTANKPRIQRT 290 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~------~~~~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~ 290 (390)
.|.+.+.++.+|+.|+...|+||||||+|++..+|+..+ ....+..+ .+--.....++.+|++|||.+++.+
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDP 325 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDP 325 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCH
Confidence 999999999999999999999999999999998776532 12222111 1111122344556677777665544
Q ss_pred HHHhhhh--------cCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689 291 KREYREQ--------TADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT 361 (390)
Q Consensus 291 ~~~~l~~--------l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~ 361 (390)
.+..-.. +|....|..| ...+.|.+. .++++|+++|+.|++|. ||+.+++|.+|.+.|.+|+..+++
T Consensus 326 ALlRSGRLDRKIEfP~Pne~aRarI--lQIHsRKMnv~~DvNfeELaRsTddFN--GAQcKAVcVEAGMiALRr~atev~ 401 (424)
T KOG0652|consen 326 ALLRSGRLDRKIEFPHPNEEARARI--LQIHSRKMNVSDDVNFEELARSTDDFN--GAQCKAVCVEAGMIALRRGATEVT 401 (424)
T ss_pred HHhhcccccccccCCCCChHHHHHH--HHHhhhhcCCCCCCCHHHHhhcccccC--chhheeeehhhhHHHHhccccccc
Confidence 4322222 2334555555 233444444 78899999999999999 999999999999999999999999
Q ss_pred hhhhhhhHHHH
Q psy11689 362 ADTANKPRIQR 372 (390)
Q Consensus 362 ~~~~~~~~~~~ 372 (390)
.+||...++..
T Consensus 402 heDfmegI~eV 412 (424)
T KOG0652|consen 402 HEDFMEGILEV 412 (424)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 13
>KOG0731|consensus
Probab=100.00 E-value=9.5e-34 Score=291.90 Aligned_cols=241 Identities=21% Similarity=0.352 Sum_probs=196.8
Q ss_pred cCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc
Q psy11689 138 EEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP 217 (390)
Q Consensus 138 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~ 217 (390)
+.+++|.||.|.+++|++|.|++.. +++|+.|+++|.+.|+|+||+||||||||.||+|+|.+++.||+.++++++...
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3457777999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh------HHHHHHHhhcCCCcE---EEeccCHHHHHhcCchhHH
Q psy11689 218 YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY------REQTADNAKKPRIPR---TNGGYREQTADTANKPRIQ 288 (390)
Q Consensus 218 ~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~------~~~~~~~~~~~~~~~---i~~~~~~~~i~~t~~~~~~ 288 (390)
++|.....++.+|..|+...|||+|+||+|++...|. .+...+...+..++. ...+..+.++++||+++++
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 9999999999999999999999999999999988773 111111122211111 1223456678999998875
Q ss_pred -----HhHHHhhhh---cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccccc
Q psy11689 289 -----RTKREYREQ---TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQ 360 (390)
Q Consensus 289 -----r~~~~~l~~---l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i 360 (390)
|+.++.... +|+-.+|..|+.-+........+++||..+|.+|+||+ ||||.++|++|++.|++++...|
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~--gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFS--GADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCc--HHHHHhhhhHHHHHHHHhccCcc
Confidence 444444333 55667777775332222222257899999999999999 99999999999999999999999
Q ss_pred ChhhhhhhHHHHhcCcccccc
Q psy11689 361 TADTANKPRIQRIGNLSQRNR 381 (390)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (390)
+.++|..+..+.++|..++.+
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~ 562 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSR 562 (774)
T ss_pred chhhHHHHHHHHhccccccch
Confidence 999999999999999877543
No 14
>KOG0734|consensus
Probab=100.00 E-value=2.1e-33 Score=274.51 Aligned_cols=236 Identities=23% Similarity=0.300 Sum_probs=194.0
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~ 219 (390)
.++|+||.|.++.|+++++++.+ ++.|..|.++|-+-|+||||+||||||||.||+|+|.+.+.||++..++++-..++
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 55667999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHH--HHhhcCCCcE---EEeccCHHHHHhcCchhHH-----H
Q psy11689 220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTA--DNAKKPRIPR---TNGGYREQTADTANKPRIQ-----R 289 (390)
Q Consensus 220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~--~~~~~~~~~~---i~~~~~~~~i~~t~~~~~~-----r 289 (390)
|.+.+.++.+|+.|+...||||||||+|++.++|...... ..-.+..+.. ......+.+|++||.|+.+ |
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence 9999999999999999999999999999999988543321 0001111000 1112344567889988875 4
Q ss_pred hHHHhhhh---cCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhh
Q psy11689 290 TKREYREQ---TADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTA 365 (390)
Q Consensus 290 ~~~~~l~~---l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~ 365 (390)
+.++.... .|+..+|..|+ +......+ .+++|+.-||+-|.||+ ||||++|++.|++.|+..+...++|+++
T Consensus 459 PGRFD~~v~Vp~PDv~GR~eIL--~~yl~ki~~~~~VD~~iiARGT~GFs--GAdLaNlVNqAAlkAa~dga~~VtM~~L 534 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVRGRTEIL--KLYLSKIPLDEDVDPKIIARGTPGFS--GADLANLVNQAALKAAVDGAEMVTMKHL 534 (752)
T ss_pred CCccceeEecCCCCcccHHHHH--HHHHhcCCcccCCCHhHhccCCCCCc--hHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 44444433 45677788884 33333333 67899999999999999 9999999999999999999999999999
Q ss_pred hhhHHHHhcCccccc
Q psy11689 366 NKPRIQRIGNLSQRN 380 (390)
Q Consensus 366 ~~~~~~~~~~~~~~~ 380 (390)
.-+..+-..|.+-+-
T Consensus 535 E~akDrIlMG~ERks 549 (752)
T KOG0734|consen 535 EFAKDRILMGPERKS 549 (752)
T ss_pred hhhhhheeecccccc
Confidence 999998888876553
No 15
>KOG0738|consensus
Probab=99.98 E-value=6.8e-33 Score=262.68 Aligned_cols=243 Identities=22% Similarity=0.294 Sum_probs=189.0
Q ss_pred chhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHH
Q psy11689 117 LNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVR 196 (390)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~ 196 (390)
+.+.+.+.+....+++.|+ ||.|+.++|+-|++++.+|+..|+.|+.+ ..|.++||++||||||||+||+
T Consensus 194 Lve~lerdIl~~np~ikW~---------DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAK 263 (491)
T KOG0738|consen 194 LVEALERDILQRNPNIKWD---------DIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAK 263 (491)
T ss_pred HHHHHHHHHhccCCCcChH---------hhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHH
Confidence 3345566777788899999 99999999999999999999999999965 4788999999999999999999
Q ss_pred HHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH---HHHhhcC------CC
Q psy11689 197 TLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT---ADNAKKP------RI 267 (390)
Q Consensus 197 aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~---~~~~~~~------~~ 267 (390)
|+|.+++..|+.++.+.+.++|.|++|+.++.+|..|+.+.|++|||||||+++..|..... ...+... ++
T Consensus 264 AvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738|consen 264 AVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred HHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999987743322 1111110 11
Q ss_pred cEEE-eccCHHHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHH
Q psy11689 268 PRTN-GGYREQTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQ 340 (390)
Q Consensus 268 ~~i~-~~~~~~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaD 340 (390)
.--. ....++++++||-|--+...+ ..+..+|+...|..++-.+... ....++++++.||++++||| |+|
T Consensus 344 ~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~-~~~~~~~~~~~lae~~eGyS--GaD 420 (491)
T KOG0738|consen 344 QGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS-VELDDPVNLEDLAERSEGYS--GAD 420 (491)
T ss_pred ccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc-ccCCCCccHHHHHHHhcCCC--hHH
Confidence 1111 123456678888764432221 2333477888887764333322 23367899999999999999 999
Q ss_pred HHHHHHHHHHHHHHccc-----------------cccChhhhhhhHHHH
Q psy11689 341 NANTANKPRIQRTKREY-----------------REQTADTANKPRIQR 372 (390)
Q Consensus 341 L~~l~~~A~~~a~~r~~-----------------~~i~~~~~~~~~~~~ 372 (390)
|.++|++|.+.+++|.. ..+++.||++|+-+.
T Consensus 421 I~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 421 ITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHc
Confidence 99999999999998731 246777777776543
No 16
>KOG0729|consensus
Probab=99.97 E-value=9.4e-32 Score=243.97 Aligned_cols=215 Identities=23% Similarity=0.320 Sum_probs=180.6
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
+.+++.|+||..++.+.+++.++.|+.+|+.|.++++.||.++|+|||||||||.+|+++|+..+..|+.+.++++..+|
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky 251 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence 44445599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHhhhhc
Q psy11689 219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQT 298 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l 298 (390)
+|++...++++|+.|+..+.||||+||+|++.+.|++... ..+.+++|+++++++++
T Consensus 252 vgegarmvrelf~martkkaciiffdeidaiggarfddg~-----------------------ggdnevqrtmleli~ql 308 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA-----------------------GGDNEVQRTMLELINQL 308 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCC-----------------------CCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998876421 12235666666666665
Q ss_pred CCchhH---HHhhcccccccCC----------------------------------C-CCCCCcchhhhcCCCCCCCcHH
Q psy11689 299 ADTAHK---TRISRTNRGYREK----------------------------------T-ADTANKPRIPRTNRGYREYSAQ 340 (390)
Q Consensus 299 ~~~~~r---~~I~~~n~~~r~~----------------------------------~-~~~vdl~~la~~t~gfs~~gaD 340 (390)
+++..| +++++||++.... . ..++-|+-||++++.-+ ||+
T Consensus 309 dgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnst--gae 386 (435)
T KOG0729|consen 309 DGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNST--GAE 386 (435)
T ss_pred cCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCc--chH
Confidence 553333 5555666543211 1 23566788999999999 999
Q ss_pred HHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCccc
Q psy11689 341 NANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQ 378 (390)
Q Consensus 341 L~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~ 378 (390)
|.++|.+|.++|++..+...|..||-++.-+.+-|.-+
T Consensus 387 irsvcteagmfairarrk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 387 IRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999888899999999998877766443
No 17
>KOG0728|consensus
Probab=99.97 E-value=7.4e-32 Score=242.73 Aligned_cols=226 Identities=23% Similarity=0.325 Sum_probs=170.2
Q ss_pred CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689 143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA 222 (390)
Q Consensus 143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~ 222 (390)
++-+||++.+.+++++.+++|.++|+.|..+|+..|.++|||||||+|||.|++++|+...+.|+.++++++..+|.|++
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igeg 225 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEG 225 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhh
Confidence 33899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH------HHHHHhhcC--CCcEEEeccCHHHHHhcCchhHHHhHHHh
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE------QTADNAKKP--RIPRTNGGYREQTADTANKPRIQRTKREY 294 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~------~~~~~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~~~~~ 294 (390)
...++++|-.|+.+.|+|||+||+|++...|.+. +.+..+..+ .+--...+....+|.+|||-+++.+.+..
T Consensus 226 srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allr 305 (404)
T KOG0728|consen 226 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLR 305 (404)
T ss_pred HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcC
Confidence 9999999999999999999999999998766432 111111110 01111122222333444443332222211
Q ss_pred hhh------cC--CchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhh
Q psy11689 295 REQ------TA--DTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTA 365 (390)
Q Consensus 295 l~~------l~--~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~ 365 (390)
... +| +...|..|+ ..+.|.+- ...+++..+|+...|.| ||+++.+|.+|.++|.+..+--+|++||
T Consensus 306 pgridrkiefp~p~e~ar~~il--kihsrkmnl~rgi~l~kiaekm~gas--gaevk~vcteagm~alrerrvhvtqedf 381 (404)
T KOG0728|consen 306 PGRIDRKIEFPPPNEEARLDIL--KIHSRKMNLTRGINLRKIAEKMPGAS--GAEVKGVCTEAGMYALRERRVHVTQEDF 381 (404)
T ss_pred CCcccccccCCCCCHHHHHHHH--HHhhhhhchhcccCHHHHHHhCCCCc--cchhhhhhhhhhHHHHHHhhccccHHHH
Confidence 111 11 223333342 22222222 34688999999999999 9999999999999999988889999999
Q ss_pred hhhHHHH
Q psy11689 366 NKPRIQR 372 (390)
Q Consensus 366 ~~~~~~~ 372 (390)
.-+.-..
T Consensus 382 emav~kv 388 (404)
T KOG0728|consen 382 EMAVAKV 388 (404)
T ss_pred HHHHHHH
Confidence 9886443
No 18
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-31 Score=269.26 Aligned_cols=254 Identities=20% Similarity=0.357 Sum_probs=206.0
Q ss_pred CCCchhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHH
Q psy11689 114 GIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTS 193 (390)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~ 193 (390)
.+++.+...+...+....+.+. |+.|.++.|+++.+.+.. ++.|..|..+|..-|+++||+||||||||.
T Consensus 129 ~~~~gkskak~~~~~~~~v~F~---------DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTL 198 (596)
T COG0465 129 AFSFGKSKAKLYLEDQVKVTFA---------DVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTL 198 (596)
T ss_pred ccCCChHHHHHhcccccCcChh---------hhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHH
Confidence 4555665555555555556666 999999999999999987 999999999999999999999999999999
Q ss_pred HHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh-----HHHHHHHhhcCCCc
Q psy11689 194 LVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY-----REQTADNAKKPRIP 268 (390)
Q Consensus 194 La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~-----~~~~~~~~~~~~~~ 268 (390)
||+++|.+.+.||+.++++++...++|-+...++++|..|++.+||||||||+|++...|. .++..+...+..+.
T Consensus 199 LAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLv 278 (596)
T COG0465 199 LAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 278 (596)
T ss_pred HHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999987772 11111111111111
Q ss_pred EEE---eccCHHHHHhcCchhHHHhHH-----Hhhh---hcCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCC
Q psy11689 269 RTN---GGYREQTADTANKPRIQRTKR-----EYRE---QTADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYRE 336 (390)
Q Consensus 269 ~i~---~~~~~~~i~~t~~~~~~r~~~-----~~l~---~l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~ 336 (390)
... ....+.++++||||+++.+.+ +... .+|+..+|..|.. .+.+.+. ..++|+..+|+.|+||+
T Consensus 279 EmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk--vH~~~~~l~~~Vdl~~iAr~tpGfs- 355 (596)
T COG0465 279 EMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILK--VHAKNKPLAEDVDLKKIARGTPGFS- 355 (596)
T ss_pred hhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHH--HHhhcCCCCCcCCHHHHhhhCCCcc-
Confidence 111 223456688999998864443 3332 2556677888854 3333333 67899999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcccccc
Q psy11689 337 YSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNR 381 (390)
Q Consensus 337 ~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~ 381 (390)
||||++++++|++.|++++...+++.+|..+..+.+-|.+++.+
T Consensus 356 -GAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 356 -GADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred -cchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 99999999999999999999999999999999999999999886
No 19
>KOG0739|consensus
Probab=99.97 E-value=2.4e-31 Score=244.51 Aligned_cols=221 Identities=22% Similarity=0.382 Sum_probs=175.9
Q ss_pred hhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 123 RIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
..+..+.|++.|+ ||.|++..|+.|++++.+|.++|+.|.. ...|.+++|||||||||||+||+|+|.+.
T Consensus 121 sAIv~EKPNVkWs---------DVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 121 SAIVREKPNVKWS---------DVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hhhhccCCCCchh---------hhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 3355678999999 9999999999999999999999999974 34678999999999999999999999999
Q ss_pred ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHH--HHhhcC-CCcE---EEeccCH
Q psy11689 203 VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTA--DNAKKP-RIPR---TNGGYRE 276 (390)
Q Consensus 203 ~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~--~~~~~~-~~~~---i~~~~~~ 276 (390)
+-.|+.+++++++++|.|++++.++.+|+.|+.++|+||||||+|++++.|.+++.. +.+... .+.. -.....+
T Consensus 191 nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 191 NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 999999999999999999999999999999999999999999999999988654331 222111 0111 1122344
Q ss_pred HHHHhcCchhHHHhH----HH--hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689 277 QTADTANKPRIQRTK----RE--YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI 350 (390)
Q Consensus 277 ~~i~~t~~~~~~r~~----~~--~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~ 350 (390)
.++++||-|-.+... ++ ....+|....|..++..+....+....+.|+..|++.|+||| |+||.-+++.|.+
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS--GsDisivVrDalm 348 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYS--GSDISIVVRDALM 348 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCC--cCceEEEehhhhh
Confidence 556666665543211 11 122356677777777666666666677899999999999999 9999999999999
Q ss_pred HHHHc
Q psy11689 351 QRTKR 355 (390)
Q Consensus 351 ~a~~r 355 (390)
..+++
T Consensus 349 ePvRk 353 (439)
T KOG0739|consen 349 EPVRK 353 (439)
T ss_pred hhHHH
Confidence 98776
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=6.9e-31 Score=260.35 Aligned_cols=238 Identities=19% Similarity=0.311 Sum_probs=187.1
Q ss_pred cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+.|++.|+ ||||++.+++++++.+.+|+.+++.|+.+++.+|+++|||||||||||++++++|++++.++
T Consensus 137 ~~~p~v~~~---------digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 137 SEKPDVTYS---------DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred cCCCCCCHH---------HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 356777787 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH------HHHHHhhcC--CCcEEEeccCHHH
Q psy11689 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE------QTADNAKKP--RIPRTNGGYREQT 278 (390)
Q Consensus 207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~------~~~~~~~~~--~~~~i~~~~~~~~ 278 (390)
+.+.++++...|.|++++.++.+|..|+..+|+||||||+|.++..+... .....+... .+.......++.+
T Consensus 208 i~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 208 IRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred EEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 99999999999999999999999999999999999999999998654211 111111000 0000111223445
Q ss_pred HHhcCchhHHHhH-----HH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689 279 ADTANKPRIQRTK-----RE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI 350 (390)
Q Consensus 279 i~~t~~~~~~r~~-----~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~ 350 (390)
|++||+++.+.+. ++ ....+|+...|..|+.... .+.....++|+..+|.+|+||+ |+||+++|++|++
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~-~~~~l~~dvd~~~la~~t~g~s--gaDI~~l~~eA~~ 364 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT-SKMNLSEEVDLEDFVSRPEKIS--AADIAAICQEAGM 364 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH-hcCCCCcccCHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 6677766554332 22 1122556667777764322 2233466799999999999999 9999999999999
Q ss_pred HHHHccccccChhhhhhhHHHHhcCc
Q psy11689 351 QRTKREYREQTADTANKPRIQRIGNL 376 (390)
Q Consensus 351 ~a~~r~~~~i~~~~~~~~~~~~~~~~ 376 (390)
.|.++++..++++||.+++-+.+.+.
T Consensus 365 ~A~r~~~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 365 QAVRKNRYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred HHHHcCCCccCHHHHHHHHHHHHhcc
Confidence 99999999999999999998877664
No 21
>KOG0737|consensus
Probab=99.96 E-value=1.6e-29 Score=239.61 Aligned_cols=216 Identities=23% Similarity=0.391 Sum_probs=168.8
Q ss_pred cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689 127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERL-AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205 (390)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~La~aia~~~~~~ 205 (390)
.....++|+ ||||++.+++.+++.+.+|+++|+.|... -..++.|+|||||||||||.||+++|.++|.+
T Consensus 84 p~~I~v~f~---------DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 84 PSEIGVSFD---------DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred hhhceeehh---------hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 344566677 99999999999999999999999999633 24578999999999999999999999999999
Q ss_pred hhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH--HHHHHhhcC------CCcEEEeccCHH
Q psy11689 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE--QTADNAKKP------RIPRTNGGYREQ 277 (390)
Q Consensus 206 ~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~--~~~~~~~~~------~~~~i~~~~~~~ 277 (390)
|+.+..+.+.++|.|+.++.++.+|..|.+.+|+||||||+|++++.|... +....+.+. ++. -....++.
T Consensus 155 fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~-s~~~~rVl 233 (386)
T KOG0737|consen 155 FINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS-SKDSERVL 233 (386)
T ss_pred cceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc-CCCCceEE
Confidence 999999999999999999999999999999999999999999999877322 222222111 111 11223466
Q ss_pred HHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHH
Q psy11689 278 TADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQ 351 (390)
Q Consensus 278 ~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~ 351 (390)
++++||||.-++... .....+|+...|..|+.. .....+..+++|+.++|+.|+||| |.||+++|..|++.
T Consensus 234 VlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkv-iLk~e~~e~~vD~~~iA~~t~GyS--GSDLkelC~~Aa~~ 310 (386)
T KOG0737|consen 234 VLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKV-ILKKEKLEDDVDLDEIAQMTEGYS--GSDLKELCRLAALR 310 (386)
T ss_pred EEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHH-HhcccccCcccCHHHHHHhcCCCc--HHHHHHHHHHHhHh
Confidence 788899886532211 112226667777777533 223345568899999999999999 99999999999999
Q ss_pred HHHc
Q psy11689 352 RTKR 355 (390)
Q Consensus 352 a~~r 355 (390)
.++.
T Consensus 311 ~ire 314 (386)
T KOG0737|consen 311 PIRE 314 (386)
T ss_pred HHHH
Confidence 8654
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=4.6e-29 Score=248.01 Aligned_cols=239 Identities=22% Similarity=0.316 Sum_probs=186.7
Q ss_pred cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+.+++.|+ +|+|++++++++.+.+..|+.+++.|+.+++.++.++|||||||||||++|+++|.+++.++
T Consensus 123 ~~~p~~~~~---------di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~ 193 (389)
T PRK03992 123 IESPNVTYE---------DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 193 (389)
T ss_pred cCCCCCCHH---------HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE
Confidence 345566777 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcC--CCcEEEeccCHHH
Q psy11689 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKP--RIPRTNGGYREQT 278 (390)
Q Consensus 207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~--~~~~i~~~~~~~~ 278 (390)
+.+.++++...|.|+.++.++.+|..|...+|+||||||+|.++..+.. ......+... .+.......++.+
T Consensus 194 i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 194 IRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred EEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 9999999999999999999999999999999999999999999865431 1111111110 0111111234556
Q ss_pred HHhcCchhHHHhHH-----Hh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689 279 ADTANKPRIQRTKR-----EY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI 350 (390)
Q Consensus 279 i~~t~~~~~~r~~~-----~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~ 350 (390)
|++||+++.+...+ +. ...+|+...|..|+.... .......++++..+|+.|+||+ |+||+++|++|++
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~-~~~~~~~~~~~~~la~~t~g~s--gadl~~l~~eA~~ 350 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT-RKMNLADDVDLEELAELTEGAS--GADLKAICTEAGM 350 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh-ccCCCCCcCCHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 77888765533222 11 112556777777764322 1222345689999999999999 9999999999999
Q ss_pred HHHHccccccChhhhhhhHHHHhcCcc
Q psy11689 351 QRTKREYREQTADTANKPRIQRIGNLS 377 (390)
Q Consensus 351 ~a~~r~~~~i~~~~~~~~~~~~~~~~~ 377 (390)
.|++++...|+++||.+++-....+-.
T Consensus 351 ~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 351 FAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 999999999999999999877655433
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=5.5e-29 Score=225.24 Aligned_cols=225 Identities=19% Similarity=0.306 Sum_probs=178.4
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
...+++||.|.++.|..++-++.+ +..|+.|..| .|++||+|||||||||++|+++|++...|++.+...++.+.+
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 455666999999999999988887 8999998865 689999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC-ChhhHH---HHHHHhhcCC---CcEEEeccCHHHHHhcCchhHHHhH
Q psy11689 219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTY-NCEYRE---QTADNAKKPR---IPRTNGGYREQTADTANKPRIQRTK 291 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l-~~r~~~---~~~~~~~~~~---~~~i~~~~~~~~i~~t~~~~~~r~~ 291 (390)
+|.+...++++|.+|+...|||+||||+|++. +.++.+ +++. +.+.. +--+..+.++.+|++||+|+++.+.
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsE-iVNALLTelDgi~eneGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSE-IVNALLTELDGIKENEGVVTIAATNRPELLDPA 270 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHH-HHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence 99999999999999999999999999999987 444332 1111 11111 1223345667789999999986444
Q ss_pred H----H--hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHH-HHHHHHHHHHHccccccChhh
Q psy11689 292 R----E--YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNAN-TANKPRIQRTKREYREQTADT 364 (390)
Q Consensus 292 ~----~--~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~-l~~~A~~~a~~r~~~~i~~~~ 364 (390)
. + ..-.+|+..+|..|+-.+....+.+. +.++..++++|.||| |.||+. +++.|...|...++.+|+.+|
T Consensus 271 iRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~~~~~~~~t~g~S--gRdikekvlK~aLh~Ai~ed~e~v~~ed 347 (368)
T COG1223 271 IRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGMS--GRDIKEKVLKTALHRAIAEDREKVERED 347 (368)
T ss_pred HHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccCHHHHHHHhCCCC--chhHHHHHHHHHHHHHHHhchhhhhHHH
Confidence 3 1 12227888888888755554444433 477999999999999 999865 455666668888999999999
Q ss_pred hhhhHHH
Q psy11689 365 ANKPRIQ 371 (390)
Q Consensus 365 ~~~~~~~ 371 (390)
+.++.-+
T Consensus 348 ie~al~k 354 (368)
T COG1223 348 IEKALKK 354 (368)
T ss_pred HHHHHHh
Confidence 9999876
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=3.9e-29 Score=252.99 Aligned_cols=307 Identities=19% Similarity=0.231 Sum_probs=205.4
Q ss_pred eeeCCCC-CccCcccccc----ccC-CcccchHHHHHHhhcCCccccccccccccchhhhcCCCCCCCCCCCC-chhhHh
Q psy11689 50 VIDLPTA-PQGRETELPF----TKL-NEEVELSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIG-LNERVQ 122 (390)
Q Consensus 50 ~i~ip~~-~~~r~~~l~~----~~~-~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~~~~~~~~~~~~~-~~~~~~ 122 (390)
.+++|.| .++.++++.- ... -++.++ +.|++.+.|++-.+++.....+-. ........ .+. +.+...
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~-~~l~~~~~gls~~~~~~~~~~~~~----~~~~~~~~-~~~~i~~~k~ 209 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSLNIKIDSELL-ENLTRACQGLSLERIRRVLSKIIA----TYKTIDEN-SIPLILEEKK 209 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhCCCCHHHHHHHHHHHHH----HcCCCChh-hHHHHHHHHH
Confidence 5566664 4455555532 111 123445 889999999999888776443211 11111110 111 111111
Q ss_pred hhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 123 RIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
..... . ...++......+++|||++.+|+.+.+.... +.....+++++.++++|||||||||||++|+++|+++
T Consensus 210 q~~~~-~--~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 210 QIISQ-T--EILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred HHHhh-h--ccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 11110 0 1112222344455999999999999876543 2345567889999999999999999999999999999
Q ss_pred ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh---HHHHHHHhhcCCCcEE-EeccCHHH
Q psy11689 203 VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY---REQTADNAKKPRIPRT-NGGYREQT 278 (390)
Q Consensus 203 ~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~---~~~~~~~~~~~~~~~i-~~~~~~~~ 278 (390)
+.+++.+++..+.++|+|+++.+++++|..|...+||||||||+|.++..+. .......+....++.+ ....++.+
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 9999999999999999999999999999999999999999999999876422 1111111111100000 12345667
Q ss_pred HHhcCchhH-----HHhHHHh---hhhcCCchhHHHhhccccccc-CCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689 279 ADTANKPRI-----QRTKREY---REQTADTAHKTRISRTNRGYR-EKTADTANKPRIPRTNRGYREYSAQNANTANKPR 349 (390)
Q Consensus 279 i~~t~~~~~-----~r~~~~~---l~~l~~~~~r~~I~~~n~~~r-~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~ 349 (390)
++|||+++. .|+.++. ...+|+...|..|+....... .....+.|++.+|+.|+||| ||||+++|.+|.
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS--GAdI~~lv~eA~ 441 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS--GAEIEQSIIEAM 441 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC--HHHHHHHHHHHH
Confidence 888888754 3433332 233667888888874443332 22345789999999999999 999999999999
Q ss_pred HHHHHccccccChhhhhhhHHH
Q psy11689 350 IQRTKREYREQTADTANKPRIQ 371 (390)
Q Consensus 350 ~~a~~r~~~~i~~~~~~~~~~~ 371 (390)
..|..++ +.++.+||..++-+
T Consensus 442 ~~A~~~~-~~lt~~dl~~a~~~ 462 (489)
T CHL00195 442 YIAFYEK-REFTTDDILLALKQ 462 (489)
T ss_pred HHHHHcC-CCcCHHHHHHHHHh
Confidence 9988765 57899999988744
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=2.4e-28 Score=243.81 Aligned_cols=234 Identities=20% Similarity=0.282 Sum_probs=180.4
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
+...+.||+|++.+++++.+.+.+|+.+++.|+.+++.++.++|||||||||||++++++|++++.+++.+.++++...|
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 33444599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcC--CCcEEEeccCHHHHHhcCchhHHHh
Q psy11689 219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKP--RIPRTNGGYREQTADTANKPRIQRT 290 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~ 290 (390)
.|+....++.+|..|....|+||||||+|+++..+.. ......+... .+.......++.+|++||+++.+.+
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 9999999999999999999999999999999865431 1111111000 0000001122334556666555433
Q ss_pred HHH-----h---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccCh
Q psy11689 291 KRE-----Y---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTA 362 (390)
Q Consensus 291 ~~~-----~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~ 362 (390)
.+. . ...+|+...|..|+.... .+....++++++.++..|+||+ ||||+++|++|++.|.++++..|++
T Consensus 338 aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~-~k~~l~~dvdl~~la~~t~g~s--gAdI~~i~~eA~~~Alr~~r~~Vt~ 414 (438)
T PTZ00361 338 ALIRPGRIDRKIEFPNPDEKTKRRIFEIHT-SKMTLAEDVDLEEFIMAKDELS--GADIKAICTEAGLLALRERRMKVTQ 414 (438)
T ss_pred HhccCCeeEEEEEeCCCCHHHHHHHHHHHH-hcCCCCcCcCHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhcCCccCH
Confidence 321 1 112455677777764322 2223466799999999999999 9999999999999999999999999
Q ss_pred hhhhhhHHHHhcC
Q psy11689 363 DTANKPRIQRIGN 375 (390)
Q Consensus 363 ~~~~~~~~~~~~~ 375 (390)
+||.+|+.+....
T Consensus 415 ~D~~~A~~~v~~~ 427 (438)
T PTZ00361 415 ADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999776443
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.95 E-value=6.9e-28 Score=247.10 Aligned_cols=253 Identities=20% Similarity=0.332 Sum_probs=193.3
Q ss_pred CchhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHH
Q psy11689 116 GLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLV 195 (390)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La 195 (390)
.+.+...+....+.+.++|+ ||+|++.+++++.+++.. +++++.|.+++...+.++||+||||||||+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~---------di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 36 SFGKSKAKLLNEEKPKVTFK---------DVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCccccccCCCCCCCHH---------HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 33333334444556677777 999999999999998887 89999999999999999999999999999999
Q ss_pred HHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH-----HHHHHHhhcCCCc--
Q psy11689 196 RTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR-----EQTADNAKKPRIP-- 268 (390)
Q Consensus 196 ~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~-----~~~~~~~~~~~~~-- 268 (390)
+++|.+++.+++.++++++...+.|.+.+.++.+|..|+..+|+||||||+|.+...+.. ........+..+.
T Consensus 106 ~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~ 185 (495)
T TIGR01241 106 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM 185 (495)
T ss_pred HHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhh
Confidence 999999999999999999888889999999999999999999999999999999865532 1111111111111
Q ss_pred -EEEeccCHHHHHhcCchhHHHh-----HHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcH
Q psy11689 269 -RTNGGYREQTADTANKPRIQRT-----KREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSA 339 (390)
Q Consensus 269 -~i~~~~~~~~i~~t~~~~~~r~-----~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~ga 339 (390)
......++.+|++||+++.+.+ .++. ...+|+...|..|+..... ......++++..+|..|.||+ |+
T Consensus 186 d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~-~~~~~~~~~l~~la~~t~G~s--ga 262 (495)
T TIGR01241 186 DGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK-NKKLAPDVDLKAVARRTPGFS--GA 262 (495)
T ss_pred ccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh-cCCCCcchhHHHHHHhCCCCC--HH
Confidence 1112234566788888765333 2221 1125566777777533221 122245788999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcccccc
Q psy11689 340 QNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNR 381 (390)
Q Consensus 340 DL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~ 381 (390)
||+++|++|++.|++++...++.++|..++.+...|.+.+.+
T Consensus 263 dl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~ 304 (495)
T TIGR01241 263 DLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSR 304 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccc
Confidence 999999999999999998899999999999999888766544
No 27
>KOG0651|consensus
Probab=99.95 E-value=2.8e-28 Score=225.62 Aligned_cols=232 Identities=22% Similarity=0.306 Sum_probs=175.2
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
....|+.++|+..+..++.+.+..|+..++.|.++++.+|.+++||||||+|||.+++++|...+++++.+.++.+.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 45566699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH------HhhcC--CCcEEEeccCHHHHHhcCchhHHHh
Q psy11689 219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTAD------NAKKP--RIPRTNGGYREQTADTANKPRIQRT 290 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~------~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~ 290 (390)
.|++.+.|++.|..|+.+.|||||+||+|++.+.++++.+.. .+.++ ++--...-+++.+|.++|+|+.+.+
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 999999999999999999999999999999998875543211 11000 0111111233334444444443322
Q ss_pred HHHhhhh--------cCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689 291 KREYREQ--------TADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT 361 (390)
Q Consensus 291 ~~~~l~~--------l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~ 361 (390)
.+..-.. +++...|..| ...+.+... ..++|.+.+.+..+||. |+|+.+.|++|.+.|++..+..+-
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I--~Kih~~~i~~~Geid~eaivK~~d~f~--gad~rn~~tEag~Fa~~~~~~~vl 362 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGI--LKIHVQPIDFHGEIDDEAILKLVDGFN--GADLRNVCTEAGMFAIPEERDEVL 362 (388)
T ss_pred hhcCCccccceeccCCcchhhceee--EeeccccccccccccHHHHHHHHhccC--hHHHhhhcccccccccchhhHHHh
Confidence 2211111 1122222222 111111111 35688899999999999 999999999999999999999999
Q ss_pred hhhhhhhHHHHhc
Q psy11689 362 ADTANKPRIQRIG 374 (390)
Q Consensus 362 ~~~~~~~~~~~~~ 374 (390)
++++.++...+.-
T Consensus 363 ~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 363 HEDFMKLVRKQAD 375 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998866643
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=99.94 E-value=3.3e-27 Score=245.83 Aligned_cols=236 Identities=23% Similarity=0.330 Sum_probs=185.7
Q ss_pred CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689 141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG 220 (390)
Q Consensus 141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g 220 (390)
..|+|++|+++.++++.+.+.. ++.++.|..++...+.++||+||||||||++|+++|.+++.+++.++++++...+.|
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 4444999999999999998877 888999999999999999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHh-
Q psy11689 221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQRT- 290 (390)
Q Consensus 221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~- 290 (390)
.....++.+|..|+...||||||||+|++...+.. ......+... +-......++.++++||+++.+.+
T Consensus 259 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~-~dg~~~~~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 259 VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTE-MDGFKGNKGVIVIAATNRVDILDAA 337 (638)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhh-hccccCCCCeeEEEecCchHhhhhh
Confidence 88888999999999999999999999999754321 1111111110 001112344566777888765433
Q ss_pred ----HHHhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChh
Q psy11689 291 ----KREYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTAD 363 (390)
Q Consensus 291 ----~~~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~ 363 (390)
.++.. ..+|+...|..|+...... ....+++++..+|++|.||+ |+||++++++|++.|++++...+|++
T Consensus 338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-~~~~~d~~l~~lA~~t~G~s--gaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARN-KKLSPDVSLELIARRTPGFS--GADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhccccCceEEEECCCCHHHHHHHHHHHHhh-cccchhHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 22221 2256677887776433322 23356788999999999999 99999999999999999999999999
Q ss_pred hhhhhHHHHhcCcccccc
Q psy11689 364 TANKPRIQRIGNLSQRNR 381 (390)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (390)
+|..+..+.+.|.+.+..
T Consensus 415 dl~~Ai~rv~~g~~~~~~ 432 (638)
T CHL00176 415 EIDTAIDRVIAGLEGTPL 432 (638)
T ss_pred HHHHHHHHHHhhhccCcc
Confidence 999999999999877644
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=6.9e-27 Score=231.05 Aligned_cols=230 Identities=24% Similarity=0.348 Sum_probs=177.4
Q ss_pred ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
+.+.+.|+ +++|++++++++.+.+..++.+++.|..+++.++.++||+||||||||++++++|++++.+++
T Consensus 115 ~~p~~~~~---------di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~ 185 (364)
T TIGR01242 115 ERPNVSYE---------DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred cCCCCCHH---------HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence 44566666 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------H----HHHHHhhcCCCcEEEeccCHH
Q psy11689 208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------E----QTADNAKKPRIPRTNGGYREQ 277 (390)
Q Consensus 208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~----~~~~~~~~~~~~~i~~~~~~~ 277 (390)
.+.+.++...+.|+....++.+|..|....|+||||||+|.+...+.. . ...+.+.... ......++.
T Consensus 186 ~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~v~ 263 (364)
T TIGR01242 186 RVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD--GFDPRGNVK 263 (364)
T ss_pred ecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh--CCCCCCCEE
Confidence 998888888889998899999999999999999999999998754321 1 1111111100 000112344
Q ss_pred HHHhcCchhHH-----HhHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689 278 TADTANKPRIQ-----RTKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR 349 (390)
Q Consensus 278 ~i~~t~~~~~~-----r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~ 349 (390)
+++++|+++.. ++.++. ....|+...|..|+.... ......+++++..+++.|+||+ |+||.++|++|+
T Consensus 264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~-~~~~l~~~~~~~~la~~t~g~s--g~dl~~l~~~A~ 340 (364)
T TIGR01242 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT-RKMKLAEDVDLEAIAKMTEGAS--GADLKAICTEAG 340 (364)
T ss_pred EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH-hcCCCCccCCHHHHHHHcCCCC--HHHHHHHHHHHH
Confidence 56666655432 222211 122556677777753322 1223345689999999999999 999999999999
Q ss_pred HHHHHccccccChhhhhhhHHH
Q psy11689 350 IQRTKREYREQTADTANKPRIQ 371 (390)
Q Consensus 350 ~~a~~r~~~~i~~~~~~~~~~~ 371 (390)
+.|.++++..|+++||.++.-.
T Consensus 341 ~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 341 MFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHhCCCccCHHHHHHHHHH
Confidence 9999999999999999998754
No 30
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=2.2e-26 Score=252.45 Aligned_cols=209 Identities=14% Similarity=0.066 Sum_probs=151.9
Q ss_pred HhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc------------------------------
Q psy11689 169 EFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY------------------------------ 218 (390)
Q Consensus 169 ~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~------------------------------ 218 (390)
....+|..+++||||+||||||||+||+|+|+++++|++.+++++++..+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34578899999999999999999999999999999999999999887543
Q ss_pred -----------hhhHH--HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc-C-CCcEEEeccCHHHHHhcC
Q psy11689 219 -----------VGEAE--QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK-P-RIPRTNGGYREQTADTAN 283 (390)
Q Consensus 219 -----------~g~~~--~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~-~-~~~~i~~~~~~~~i~~t~ 283 (390)
.+.++ ..++.+|+.|+..+||||+|||||++............+.+ . +........++.++|+||
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 11222 24888999999999999999999999865322111111111 1 110011234567799999
Q ss_pred chhHHHhHHHhhhh--------cCCchhHHHhhcccccccC-CC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHH
Q psy11689 284 KPRIQRTKREYREQ--------TADTAHKTRISRTNRGYRE-KT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRT 353 (390)
Q Consensus 284 ~~~~~r~~~~~l~~--------l~~~~~r~~I~~~n~~~r~-~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~ 353 (390)
+|+.+.+.+...+. +|+..+|..++..-...+. .. ...+|+..+|+.|.||+ ||||++||++|++.|+
T Consensus 1781 RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfS--GADLanLvNEAaliAi 1858 (2281)
T CHL00206 1781 IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSN--ARDLVALTNEALSISI 1858 (2281)
T ss_pred CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCC--HHHHHHHHHHHHHHHH
Confidence 98876555533222 2233444433211111111 11 23368999999999999 9999999999999999
Q ss_pred HccccccChhhhhhhHHHHhcCcccc
Q psy11689 354 KREYREQTADTANKPRIQRIGNLSQR 379 (390)
Q Consensus 354 ~r~~~~i~~~~~~~~~~~~~~~~~~~ 379 (390)
+++...|+++++..|..+++.|.+.+
T Consensus 1859 rq~ks~Id~~~I~~Al~Rq~~g~~~~ 1884 (2281)
T CHL00206 1859 TQKKSIIDTNTIRSALHRQTWDLRSQ 1884 (2281)
T ss_pred HcCCCccCHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999998644
No 31
>KOG0740|consensus
Probab=99.93 E-value=1.2e-26 Score=227.17 Aligned_cols=224 Identities=21% Similarity=0.315 Sum_probs=178.6
Q ss_pred hHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHH
Q psy11689 120 RVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLA 199 (390)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia 199 (390)
.+..++......+.|+ |++|++..++.+.+.+.+|+..++.|..+. .+.+++||.||||+|||+|++|+|
T Consensus 138 ~i~~EI~~~~~~v~~~---------di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiA 207 (428)
T KOG0740|consen 138 GIRNEIGDTLRNVGWD---------DIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIA 207 (428)
T ss_pred HHHHHHhccCCccccc---------CCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHH
Confidence 3455566667778888 999999999999999999999999999765 567899999999999999999999
Q ss_pred HhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH--H-----HHhhcCCCcEEEe
Q psy11689 200 AHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT--A-----DNAKKPRIPRTNG 272 (390)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~--~-----~~~~~~~~~~i~~ 272 (390)
.+++..|+.++.+.+.++|+|+.++.++.+|..|+..+|+|+|+||+|+++..|..+.. . +.+..........
T Consensus 208 sE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~ 287 (428)
T KOG0740|consen 208 TESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP 287 (428)
T ss_pred hhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999988743321 1 1111111222233
Q ss_pred ccCHHHHHhcCchhHH------HhHHHhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHH
Q psy11689 273 GYREQTADTANKPRIQ------RTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTAN 346 (390)
Q Consensus 273 ~~~~~~i~~t~~~~~~------r~~~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~ 346 (390)
..++.++++||+|.-. |........+|+...|..++..-.........+.|++.+++.|+||+ |+||.++|+
T Consensus 288 ~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegys--gsdi~~l~k 365 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYS--GSDITALCK 365 (428)
T ss_pred CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcc--cccHHHHHH
Confidence 4577788888887653 22223334577788888887444444445566788999999999999 999999999
Q ss_pred HHHHHHHHc
Q psy11689 347 KPRIQRTKR 355 (390)
Q Consensus 347 ~A~~~a~~r 355 (390)
+|++.-.+.
T Consensus 366 ea~~~p~r~ 374 (428)
T KOG0740|consen 366 EAAMGPLRE 374 (428)
T ss_pred HhhcCchhh
Confidence 999875443
No 32
>KOG0730|consensus
Probab=99.91 E-value=1.2e-24 Score=218.98 Aligned_cols=220 Identities=23% Similarity=0.344 Sum_probs=172.6
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHH
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAE 223 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~ 223 (390)
+++||+......+++.+.+|+.++..+..+++++|+++|+|||||+|||.+++++|++.+..++.+++++++.++.|+++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CeEEEEcCCCCCCChhhHHHH-HHHhhcCC---CcEEEeccCHHHHHhcCchhHHHhHHH-----
Q psy11689 224 QNVTQLFHRARLAA-PAILFIDEIERTYNCEYREQT-ADNAKKPR---IPRTNGGYREQTADTANKPRIQRTKRE----- 293 (390)
Q Consensus 224 ~~i~~~f~~A~~~~-p~il~lDEid~~l~~r~~~~~-~~~~~~~~---~~~i~~~~~~~~i~~t~~~~~~r~~~~----- 293 (390)
++++++|+.|.+++ |+++|+||+|++++++..... ...+.... .--.....++.+++++|+|.-+.+.+.
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd 343 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFD 343 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCc
Confidence 99999999999999 999999999999986543222 11111000 000112233455777887776544443
Q ss_pred --hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689 294 --YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQ 371 (390)
Q Consensus 294 --~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~ 371 (390)
.....|+..+|..|+...... .+..+++++.++|..|+||+ ||||.++|++|++.+.++ ++++|..+..+
T Consensus 344 ~ev~IgiP~~~~RldIl~~l~k~-~~~~~~~~l~~iA~~thGyv--GaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~ 415 (693)
T KOG0730|consen 344 REVEIGIPGSDGRLDILRVLTKK-MNLLSDVDLEDIAVSTHGYV--GADLAALCREASLQATRR-----TLEIFQEALMG 415 (693)
T ss_pred ceeeecCCCchhHHHHHHHHHHh-cCCcchhhHHHHHHHccchh--HHHHHHHHHHHHHHHhhh-----hHHHHHHHHhc
Confidence 222255666777764222211 12236799999999999999 999999999999999888 67777776643
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.91 E-value=2.1e-24 Score=226.81 Aligned_cols=231 Identities=23% Similarity=0.337 Sum_probs=182.3
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~ 224 (390)
++.|++..++.+.+.+.+ ...+..+..++...+.+++|+||||||||++++++|.+++.+++.+++.++...+.+....
T Consensus 153 di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~ 231 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 231 (644)
T ss_pred HHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHH
Confidence 999999999999999987 6677788878878889999999999999999999999999999999999988888888889
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHH---
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKR--- 292 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~--- 292 (390)
.++.+|..|+..+|+||||||+|.+...+.. ......+.. .+-......++.++++||+|+.+.+.+
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~-~mdg~~~~~~vivIaaTN~p~~lD~Al~Rp 310 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV-EMDGFEGNEGIIVIAATNRPDVLDPALLRP 310 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHH-hhhcccCCCCeeEEEecCChhhcCHHHhCC
Confidence 9999999999999999999999999765432 111111111 011112234566788888887643332
Q ss_pred --Hhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhh
Q psy11689 293 --EYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANK 367 (390)
Q Consensus 293 --~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~ 367 (390)
+.. ..+|+...|..|+.... .+.....++|+..+|+.|.||+ ||||+++|++|++.|++++...+++++|.+
T Consensus 311 gRfdr~i~v~~Pd~~~R~~Il~~~~-~~~~l~~~~d~~~la~~t~G~s--gadl~~l~~eAa~~a~r~~~~~i~~~d~~~ 387 (644)
T PRK10733 311 GRFDRQVVVGLPDVRGREQILKVHM-RRVPLAPDIDAAIIARGTPGFS--GADLANLVNEAALFAARGNKRVVSMVEFEK 387 (644)
T ss_pred cccceEEEcCCCCHHHHHHHHHHHh-hcCCCCCcCCHHHHHhhCCCCC--HHHHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 221 22556667877764332 2223356789999999999999 999999999999999999999999999999
Q ss_pred hHHHHhcCccccc
Q psy11689 368 PRIQRIGNLSQRN 380 (390)
Q Consensus 368 ~~~~~~~~~~~~~ 380 (390)
+......|.+.+.
T Consensus 388 a~~~v~~g~~~~~ 400 (644)
T PRK10733 388 AKDKIMMGAERRS 400 (644)
T ss_pred HHHHHhccccccc
Confidence 9998888887654
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.90 E-value=4.6e-24 Score=215.96 Aligned_cols=234 Identities=21% Similarity=0.314 Sum_probs=165.8
Q ss_pred ccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689 126 EGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205 (390)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~ 205 (390)
..+.|++.|+ +|+|++..++++++.+..|+.+++.|..+++.+++++|||||||||||++++++|++++.+
T Consensus 173 ~~~~p~v~~~---------dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 173 LEEVPDVTYA---------DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred eecCCCCCHH---------HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 3445666666 9999999999999999999999999999999999999999999999999999999987644
Q ss_pred ----------hhccccccccCcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhH---HHHHHHhhcCC--
Q psy11689 206 ----------VLAASAAQLYSPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYR---EQTADNAKKPR-- 266 (390)
Q Consensus 206 ----------~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~---~~~~~~~~~~~-- 266 (390)
|+.+..+++...|.|+.++.++.+|..|+.. .|+||||||+|+++..+.. .+....+....
T Consensus 244 i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 244 IGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred cccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 4466777888999999999999999998764 7999999999999876532 11111111111
Q ss_pred -CcEEEeccCHHHHHhcCchhHH-----HhHHHh---hhhcCCchhHHHhhcccccccCCC---------CCCCCc----
Q psy11689 267 -IPRTNGGYREQTADTANKPRIQ-----RTKREY---REQTADTAHKTRISRTNRGYREKT---------ADTANK---- 324 (390)
Q Consensus 267 -~~~i~~~~~~~~i~~t~~~~~~-----r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~---------~~~vdl---- 324 (390)
+-.+....++.+|++||+++.+ |+.++. ....|+...+..|+.......... ....++
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~ 403 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALI 403 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHH
Confidence 1111222345668888887664 333332 122455666766653221110000 000011
Q ss_pred -------------------------chhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc----ccccChhhhhhhHH
Q psy11689 325 -------------------------PRIPRTNRGYREYSAQNANTANKPRIQRTKRE----YREQTADTANKPRI 370 (390)
Q Consensus 325 -------------------------~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~----~~~i~~~~~~~~~~ 370 (390)
.+....++.|| ||+|+++|.+|...|..+. ..-++++|+..++.
T Consensus 404 ~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~s--Ga~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~ 476 (512)
T TIGR03689 404 QRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVS--GAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVL 476 (512)
T ss_pred HHHHHHHhhhhcccceeEEEecCCceeeEeeccccc--HHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHH
Confidence 11223578899 9999999999999988773 45788999988874
No 35
>KOG0732|consensus
Probab=99.90 E-value=4e-24 Score=226.22 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=169.4
Q ss_pred CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cchhcccccccc
Q psy11689 141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YRVLAASAAQLY 215 (390)
Q Consensus 141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~~~~i~~~~~~ 215 (390)
+.|++|||++.++..+++.+..|+.||+.|.++.+.+|+++|++||||||||..|+++|..+. ..|+.-++++..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 344499999999999999999999999999999999999999999999999999999997763 567788889999
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH--HHHHhhcCCCcEE---EeccCHHHHHhcCchhHH--
Q psy11689 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ--TADNAKKPRIPRT---NGGYREQTADTANKPRIQ-- 288 (390)
Q Consensus 216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~--~~~~~~~~~~~~i---~~~~~~~~i~~t~~~~~~-- 288 (390)
++|+|+.+.+++.+|..|++.+|+|||+||||.+.+.|++.+ +...+....+... ...-.+.+|++|||++-.
T Consensus 342 skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dp 421 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDP 421 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccch
Confidence 999999999999999999999999999999999998885433 2223322222221 112234568888887654
Q ss_pred ---HhHH---HhhhhcCCchhHHHhh-cccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689 289 ---RTKR---EYREQTADTAHKTRIS-RTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT 361 (390)
Q Consensus 289 ---r~~~---~~l~~l~~~~~r~~I~-~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~ 361 (390)
|+.+ ++...+++...|..|+ .-++.|. .+...--+..+|+.|.||- ||||++||..|++.+.++....+.
T Consensus 422 aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~gy~--gaDlkaLCTeAal~~~~r~~Pq~y 498 (1080)
T KOG0732|consen 422 ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEETSGYG--GADLKALCTEAALIALRRSFPQIY 498 (1080)
T ss_pred hhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHhccccc--hHHHHHHHHHHhhhhhccccCeee
Confidence 3333 2223355666665554 3444444 3333345678999999999 999999999999999999755443
Q ss_pred h
Q psy11689 362 A 362 (390)
Q Consensus 362 ~ 362 (390)
+
T Consensus 499 ~ 499 (1080)
T KOG0732|consen 499 S 499 (1080)
T ss_pred c
Confidence 3
No 36
>KOG0741|consensus
Probab=99.89 E-value=2.7e-24 Score=210.81 Aligned_cols=234 Identities=19% Similarity=0.239 Sum_probs=176.1
Q ss_pred CccChHHHHHHH-HHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-hccccccccCcchhhH
Q psy11689 145 ELGGLKGVRALM-EKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV-LAASAAQLYSPYVGEA 222 (390)
Q Consensus 145 ~i~g~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~-~~i~~~~~~~~~~g~~ 222 (390)
.|||++.--..+ +.++..-.--|+..+++|+++-+|+|||||||||||.+|+.|..-++..- ..+++++++++|+|++
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS 301 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES 301 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence 378877655444 44444434457888999999999999999999999999999998887644 4578999999999999
Q ss_pred HHHHHHHHHHHHhc--------CCeEEEEcCCCCCCChhhHH----HHHHHhhcCCCcEEEec---cCHHHHHhcCchhH
Q psy11689 223 EQNVTQLFHRARLA--------APAILFIDEIERTYNCEYRE----QTADNAKKPRIPRTNGG---YREQTADTANKPRI 287 (390)
Q Consensus 223 ~~~i~~~f~~A~~~--------~p~il~lDEid~~l~~r~~~----~~~~~~~~~~~~~i~~~---~~~~~i~~t~~~~~ 287 (390)
|++++++|++|..- .--||++||+|+++..|.+. .+.+.+.+..++.+.+- +...+|+.|||+++
T Consensus 302 E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl 381 (744)
T KOG0741|consen 302 EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL 381 (744)
T ss_pred HHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh
Confidence 99999999998432 34599999999999777542 23344444444443332 34556889999998
Q ss_pred HHhHHHh--------hhhcCCchhHHHhh---cccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc
Q psy11689 288 QRTKREY--------REQTADTAHKTRIS---RTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE 356 (390)
Q Consensus 288 ~r~~~~~--------l~~l~~~~~r~~I~---~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~ 356 (390)
+...+.. ...+|+..+|.+|+ +..........+|+|+.+||.+|..|| ||+|+.|++.|...|.-|.
T Consensus 382 IDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfS--GAEleglVksA~S~A~nR~ 459 (744)
T KOG0741|consen 382 IDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFS--GAELEGLVKSAQSFAMNRH 459 (744)
T ss_pred HHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHhh
Confidence 6444422 22378888888875 333344455688999999999999999 9999999999999998772
Q ss_pred ---------------ccccChhhhhhhH--HHHhcCccccc
Q psy11689 357 ---------------YREQTADTANKPR--IQRIGNLSQRN 380 (390)
Q Consensus 357 ---------------~~~i~~~~~~~~~--~~~~~~~~~~~ 380 (390)
.-+|+++||-.+. ++-.||.++..
T Consensus 460 vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~ 500 (744)
T KOG0741|consen 460 VKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEED 500 (744)
T ss_pred hccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHH
Confidence 2278888988887 66678877654
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=3.8e-23 Score=221.32 Aligned_cols=211 Identities=26% Similarity=0.430 Sum_probs=160.8
Q ss_pred CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689 141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG 220 (390)
Q Consensus 141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g 220 (390)
..+++|+|++.+++.+.+.+.+++.+++.|+++++.++.++|||||||||||+|++++|++.+.+++.++++++...+.|
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g 254 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYG 254 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccccc
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHH-----H
Q psy11689 221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQ-----R 289 (390)
Q Consensus 221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~-----r 289 (390)
+.++.++.+|..|....|+||||||+|.+...+.. ......+... +........+.++++||+++.+ +
T Consensus 255 ~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~-ld~l~~~~~vivI~atn~~~~ld~al~r 333 (733)
T TIGR01243 255 ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTL-MDGLKGRGRVIVIGATNRPDALDPALRR 333 (733)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHH-hhccccCCCEEEEeecCChhhcCHHHhC
Confidence 99999999999999999999999999999865432 1111111110 0001111223445566665432 2
Q ss_pred hHHH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689 290 TKRE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR 355 (390)
Q Consensus 290 ~~~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r 355 (390)
+.++ ....+|+...|..|+..... ......++++..+++.|+||+ |+||..++..|++.+.++
T Consensus 334 ~gRfd~~i~i~~P~~~~R~~Il~~~~~-~~~l~~d~~l~~la~~t~G~~--gadl~~l~~~a~~~al~r 399 (733)
T TIGR01243 334 PGRFDREIVIRVPDKRARKEILKVHTR-NMPLAEDVDLDKLAEVTHGFV--GADLAALAKEAAMAALRR 399 (733)
T ss_pred chhccEEEEeCCcCHHHHHHHHHHHhc-CCCCccccCHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHH
Confidence 2222 12235566677777542221 122355788999999999999 999999999999998776
No 38
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.83 E-value=6.9e-21 Score=182.77 Aligned_cols=225 Identities=16% Similarity=0.096 Sum_probs=148.1
Q ss_pred CCCc-cChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689 143 VPEL-GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 143 ~~~i-~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~ 221 (390)
|+++ +|+--.+..+.+++....+. ....+++++|.+++||||||||||++++++|++++.+++.++++++.++|.|+
T Consensus 114 f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 114 FDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE 191 (413)
T ss_pred hhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence 3355 66666666666555332221 12236789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----cCCeEEEEcCCCCCCChhhHH------HHH-HHhhcC--CCc---------EEEeccCHHH
Q psy11689 222 AEQNVTQLFHRARL-----AAPAILFIDEIERTYNCEYRE------QTA-DNAKKP--RIP---------RTNGGYREQT 278 (390)
Q Consensus 222 ~~~~i~~~f~~A~~-----~~p~il~lDEid~~l~~r~~~------~~~-~~~~~~--~~~---------~i~~~~~~~~ 278 (390)
+++.++++|..|.. .+||||||||+|++++.+... +.. ..+.+. ..+ ......++.+
T Consensus 192 sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V 271 (413)
T PLN00020 192 PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI 271 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceE
Confidence 99999999999975 479999999999999876321 111 111111 111 1123456788
Q ss_pred HHhcCchhHH-----HhHHHh-hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCC--CCcHHHHHHHHHHHH
Q psy11689 279 ADTANKPRIQ-----RTKREY-REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYR--EYSAQNANTANKPRI 350 (390)
Q Consensus 279 i~~t~~~~~~-----r~~~~~-l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs--~~gaDL~~l~~~A~~ 350 (390)
|+|||+|+.+ |+.++. ...+|+..+|..|+... .+....+..|+..|+..++|-+ .|||=-..+..++..
T Consensus 272 IaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~--~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~ 349 (413)
T PLN00020 272 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGI--FRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVR 349 (413)
T ss_pred EEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHH--hccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHH
Confidence 9999998764 433321 12367788888885332 2223334466677777766632 225544444444444
Q ss_pred HHHHccccccChhhhhhhHHHHhcC
Q psy11689 351 QRTKREYREQTADTANKPRIQRIGN 375 (390)
Q Consensus 351 ~a~~r~~~~i~~~~~~~~~~~~~~~ 375 (390)
.-+. .+..+.+.+.+++..-+
T Consensus 350 ~~i~----~~g~~~~~~~l~~~~~~ 370 (413)
T PLN00020 350 KWIA----EVGVENLGKKLVNSKKG 370 (413)
T ss_pred HHHH----HhhHHHHHHHHhcCCCC
Confidence 4333 34567777766664433
No 39
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.2e-17 Score=152.66 Aligned_cols=86 Identities=27% Similarity=0.356 Sum_probs=78.3
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|+..-.+||=||+||||+|.+||||+| ||||| .|++|. +.++|.+||+| |+++++||+ +
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLR--------------PGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~-e 347 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLR--------------PGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL-E 347 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcC--------------CCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH-H
Confidence 555667899999999999999999999 99999 777777 58899999999 899999999 9
Q ss_pred HHHHhhcCCccccccccccccchhhhc
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
.||+.|.|+|||||.++|+||++.+..
T Consensus 348 ~la~~~~g~sGAdlkaictEAGm~AiR 374 (406)
T COG1222 348 LLARLTEGFSGADLKAICTEAGMFAIR 374 (406)
T ss_pred HHHHhcCCCchHHHHHHHHHHhHHHHH
Confidence 999999999999999999999998554
No 40
>KOG0732|consensus
Probab=99.58 E-value=5.6e-16 Score=164.89 Aligned_cols=232 Identities=17% Similarity=0.159 Sum_probs=140.5
Q ss_pred hhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--ccCCcccc--hHHHHH
Q psy11689 7 RVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--TKLNEEVE--LSENVQ 80 (390)
Q Consensus 7 ~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~~~~~~v~--l~~~la 80 (390)
.--=-|+|||||||++.+|+||+| ||||+ ++..|. +.++|.+||.| .+|.+.+. +..+||
T Consensus 402 dsRgqVvvigATnRpda~dpaLRR--------------Pgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la 467 (1080)
T KOG0732|consen 402 DSRGQVVVIGATNRPDAIDPALRR--------------PGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLA 467 (1080)
T ss_pred CCCCceEEEcccCCccccchhhcC--------------CcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHH
Confidence 333458999999999999999999 99999 555555 38899999998 55666554 468899
Q ss_pred HhhcCCccccccccccccchhhhcCCCC--CCCCCCCCchhh----Hhhh----cccccCccccccccCCCCCC----Cc
Q psy11689 81 REEEGIAGENLQRGGGEEGIELREGGQR--NGGEGGIGLNER----VQRI----GEGREERRDWEGEEEGAFVP----EL 146 (390)
Q Consensus 81 ~~t~G~~g~~l~~~~~ea~~~~~~~~~~--~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~----~i 146 (390)
+.|.||.|+||+++|.+|+..+....-. -.....+..... ..+. +....+............+. -+
T Consensus 468 ~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~l 547 (1080)
T KOG0732|consen 468 EETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPL 547 (1080)
T ss_pred HhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecc
Confidence 9999999999999999999874432211 001111110000 0000 01111111110000000000 01
Q ss_pred cChHHHHHHHHHHHhcc----------ccCHHHhhh-cCC--CCCceEEEEcCCCChHHHHHHHHHHhh-ccchhccccc
Q psy11689 147 GGLKGVRALMEKTVEWP----------FKYAREFER-LAI--PKPKGILLYGPPGCAKTSLVRTLAAHS-VYRVLAASAA 212 (390)
Q Consensus 147 ~g~~~~~~~l~~~~~~~----------~~~~~~~~~-~~~--~~~~~vLl~GppGtGKT~La~aia~~~-~~~~~~i~~~ 212 (390)
.++......++..+... ......|.. +.+ --...+++.|..|.|-+.+..||-+.+ ++++..+..+
T Consensus 548 l~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~is 627 (1080)
T KOG0732|consen 548 LPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDIS 627 (1080)
T ss_pred cchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHH
Confidence 11112221111111110 001111111 111 113448999999999999999998776 6788777766
Q ss_pred cccCcc-hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 213 QLYSPY-VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 213 ~~~~~~-~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
.+.... .+..+..+..+|..|++..||||||.++|-+...
T Consensus 628 sll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~ 668 (1080)
T KOG0732|consen 628 SLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARV 668 (1080)
T ss_pred HHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhc
Confidence 666555 5667788999999999999999999999876543
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.53 E-value=2.5e-15 Score=126.12 Aligned_cols=73 Identities=40% Similarity=0.738 Sum_probs=69.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcC-CeEEEEcCCCCCCChh
Q psy11689 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAA-PAILFIDEIERTYNCE 253 (390)
Q Consensus 181 vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~-p~il~lDEid~~l~~r 253 (390)
+||+||||||||++++.+|..++.+++.+++.++...+.+..++.+..+|..+.... |+||+|||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 699999999999999999999999999999999998889999999999999999998 9999999999998765
No 42
>KOG0742|consensus
Probab=99.50 E-value=5.2e-14 Score=135.33 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=84.7
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
.+..+.+|+........+..+... ..+... ...+-+++|+|||||||||+.|+-+|..+|..+-.+.+.+.. ..
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~a-TaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-Pl 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIA-TANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PL 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHH-hccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-cc
Confidence 344456787777777777776654 121111 124567899999999999999999999999988877776543 23
Q ss_pred hhhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCCChhhHHHH
Q psy11689 219 VGEAEQNVTQLFHRARLAAPA-ILFIDEIERTYNCEYREQT 258 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~-il~lDEid~~l~~r~~~~~ 258 (390)
..+....|+++|..|.++... +|||||.|+++..|....+
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym 464 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM 464 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh
Confidence 344557899999999988765 8899999999988866544
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.49 E-value=2.9e-13 Score=129.40 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=82.4
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhhc-------cchhccccccc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPK---PKGILLYGPPGCAKTSLVRTLAAHSV-------YRVLAASAAQL 214 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vLl~GppGtGKT~La~aia~~~~-------~~~~~i~~~~~ 214 (390)
+++|++++|+++.+++.+ ......++..++.+ +.+++|+||||||||++|+++|..+. .+++.++..++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999999877 44555666666544 44699999999999999999997642 25677888888
Q ss_pred cCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 215 YSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 215 ~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
.+.+.|.+......+|..| .++||||||++.+..+
T Consensus 103 ~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKP 137 (287)
T ss_pred HHHHhccchHHHHHHHHHc---cCCEEEEEccchhccC
Confidence 8888888777777777775 4579999999998543
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.45 E-value=3.7e-13 Score=127.15 Aligned_cols=105 Identities=23% Similarity=0.385 Sum_probs=82.3
Q ss_pred CCCccChHHHHHHHHHHHhccccCHHHhhhcCCC---CCceEEEEcCCCChHHHHHHHHHHhhc-------cchhccccc
Q psy11689 143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIP---KPKGILLYGPPGCAKTSLVRTLAAHSV-------YRVLAASAA 212 (390)
Q Consensus 143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~La~aia~~~~-------~~~~~i~~~ 212 (390)
+++++|++.+|+.+++.+.++... ......+.. .+.+++|+||||||||++|+++|..+. .+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 448999999999999998875433 222223333 346799999999999999999997642 356677888
Q ss_pred cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 213 QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 213 ~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
++.+.|.|+....+..+|..|. ++||||||++.+..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR 119 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc
Confidence 8888999998888889998763 57999999999863
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.44 E-value=7.2e-13 Score=126.60 Aligned_cols=103 Identities=25% Similarity=0.397 Sum_probs=84.9
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhhc-------cchhccccccc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPK---PKGILLYGPPGCAKTSLVRTLAAHSV-------YRVLAASAAQL 214 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vLl~GppGtGKT~La~aia~~~~-------~~~~~i~~~~~ 214 (390)
+++|++++|+++.+++.+ ...++.+...++.. +.+++|+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999999988 66667777777654 45899999999999999999987653 26778888888
Q ss_pred cCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 215 YSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 215 ~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
...+.|.+...+..+|..| .+++|||||++.+..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~ 135 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYR 135 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhcc
Confidence 8888888777778888775 458999999998753
No 46
>KOG0735|consensus
Probab=99.41 E-value=2.5e-13 Score=138.26 Aligned_cols=189 Identities=18% Similarity=0.167 Sum_probs=120.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhc----cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV----YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~----~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
+.....+||+||+|||||.|+++++.+.. +++..++|+.+.........+.+..+|..|.+++|+||++|++|.++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 44567899999999999999999998875 45567899988877777777788999999999999999999999999
Q ss_pred ChhhHHHH---------HHHh--------hcCCC-cEEEeccCHHHHHhcCchhHHHhHH-HhhhhcC--CchhHHHhhc
Q psy11689 251 NCEYREQT---------ADNA--------KKPRI-PRTNGGYREQTADTANKPRIQRTKR-EYREQTA--DTAHKTRISR 309 (390)
Q Consensus 251 ~~r~~~~~---------~~~~--------~~~~~-~~i~~~~~~~~i~~t~~~~~~r~~~-~~l~~l~--~~~~r~~I~~ 309 (390)
+....+.. ...+ ..... ..+..+....++. |.+..+.+ .....++ ...+|..|++
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~----~~L~s~~~Fq~~~~L~ap~~~~R~~IL~ 583 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN----PLLVSPLLFQIVIALPAPAVTRRKEILT 583 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC----hhhcCccceEEEEecCCcchhHHHHHHH
Confidence 73221111 0000 11111 1111111111111 11111111 1111122 3566777765
Q ss_pred ccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc----cccccChhhhhhhH
Q psy11689 310 TNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR----EYREQTADTANKPR 369 (390)
Q Consensus 310 ~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r----~~~~i~~~~~~~~~ 369 (390)
+...........-|++-++..|+||. .-||.-++.+|...|... ....+|.++|.++.
T Consensus 584 ~~~s~~~~~~~~~dLd~ls~~TEGy~--~~DL~ifVeRai~~a~leris~~~klltke~f~ksL 645 (952)
T KOG0735|consen 584 TIFSKNLSDITMDDLDFLSVKTEGYL--ATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSL 645 (952)
T ss_pred HHHHhhhhhhhhHHHHHHHHhcCCcc--chhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 54444332222234444999999999 999999999999998722 22256777776654
No 47
>KOG0736|consensus
Probab=99.35 E-value=8.6e-13 Score=135.47 Aligned_cols=192 Identities=17% Similarity=0.175 Sum_probs=132.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR 255 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~ 255 (390)
.....+||+|+||||||++++++|.++|.+++.++|.++........+.++...|.+|+.++|+|||+-+.|.+.-....
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 34567999999999999999999999999999999999999988899999999999999999999999999988743332
Q ss_pred HH---HHHHhhcCCCcE-E-EeccCHHHHHhcCc-----hhHHHhHH-HhhhhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689 256 EQ---TADNAKKPRIPR-T-NGGYREQTADTANK-----PRIQRTKR-EYREQTADTAHKTRISRTNRGYREKTADTANK 324 (390)
Q Consensus 256 ~~---~~~~~~~~~~~~-i-~~~~~~~~i~~t~~-----~~~~r~~~-~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl 324 (390)
.. .+..+....... . ...+++.++++++. +.++..++ +.....++..+|..|+-. ...+.....++.+
T Consensus 509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~-y~~~~~~n~~v~~ 587 (953)
T KOG0736|consen 509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQW-YLNHLPLNQDVNL 587 (953)
T ss_pred chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHH-HHhccccchHHHH
Confidence 21 112211110000 0 01223333444443 33343333 233335566777776421 1111223556888
Q ss_pred chhhhcCCCCCCCcHHHHHHHHHHHHHHHHc---cc-----------------cccChhhhhhhHH
Q psy11689 325 PRIPRTNRGYREYSAQNANTANKPRIQRTKR---EY-----------------REQTADTANKPRI 370 (390)
Q Consensus 325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r---~~-----------------~~i~~~~~~~~~~ 370 (390)
..+|++|.||+ -+|++.++..+...+..+ .. ..++++||-++..
T Consensus 588 k~~a~~t~gfs--~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals 651 (953)
T KOG0736|consen 588 KQLARKTSGFS--FGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALS 651 (953)
T ss_pred HHHHHhcCCCC--HHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHH
Confidence 89999999999 999999998885444433 11 4689999999885
No 48
>KOG0743|consensus
Probab=99.34 E-value=1.3e-12 Score=127.97 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=89.3
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~ 219 (390)
..+|+.++--.+.|+.+.+-+..+.+..+.|++.|.++.+|.|||||||||||+++.|+|+.+++.++.+...+....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 467778888899999999999999999999999999999999999999999999999999999999988877654322
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689 220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY 254 (390)
Q Consensus 220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~ 254 (390)
.+ ++.++.. ..+-+||+|.+||..++.+.
T Consensus 275 --~d--Lr~LL~~--t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 275 --SD--LRHLLLA--TPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred --HH--HHHHHHh--CCCCcEEEEeeccccccccc
Confidence 11 5555544 34558999999999987543
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.25 E-value=3.4e-11 Score=117.55 Aligned_cols=217 Identities=19% Similarity=0.170 Sum_probs=122.7
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA 212 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~ 212 (390)
.|+.......++++.|.+..++.+...+..... .-.++.+++|+||||||||++++++|++.+..+....++
T Consensus 14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~ 85 (328)
T PRK00080 14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGP 85 (328)
T ss_pred hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecc
Confidence 344444555666999999999999888754211 113567899999999999999999999998776655443
Q ss_pred cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEe-----------ccCHHHHHh
Q psy11689 213 QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNG-----------GYREQTADT 281 (390)
Q Consensus 213 ~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~-----------~~~~~~i~~ 281 (390)
.+. ....+..++.. ...++||||||++.+-.... +.....+.......+.. -.+...+++
T Consensus 86 ~~~------~~~~l~~~l~~--l~~~~vl~IDEi~~l~~~~~-e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a 156 (328)
T PRK00080 86 ALE------KPGDLAAILTN--LEEGDVLFIDEIHRLSPVVE-EILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA 156 (328)
T ss_pred ccc------ChHHHHHHHHh--cccCCEEEEecHhhcchHHH-HHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence 221 11223334433 24678999999999864322 11112221111111110 011223444
Q ss_pred cCchhHH-HhHHHh---hhh--cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689 282 ANKPRIQ-RTKREY---REQ--TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR 355 (390)
Q Consensus 282 t~~~~~~-r~~~~~---l~~--l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r 355 (390)
++++... .+++.. ... ..+..+...|+...........++--+..|++++.|+ ...+..++.++...|..+
T Consensus 157 t~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~---pR~a~~~l~~~~~~a~~~ 233 (328)
T PRK00080 157 TTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT---PRIANRLLRRVRDFAQVK 233 (328)
T ss_pred cCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHHc
Confidence 4443321 111111 111 2233444444322111112222333356788888876 577788888887777776
Q ss_pred cccccChhhhhhhH
Q psy11689 356 EYREQTADTANKPR 369 (390)
Q Consensus 356 ~~~~i~~~~~~~~~ 369 (390)
+...++.+++..+.
T Consensus 234 ~~~~I~~~~v~~~l 247 (328)
T PRK00080 234 GDGVITKEIADKAL 247 (328)
T ss_pred CCCCCCHHHHHHHH
Confidence 66788888888776
No 50
>KOG0728|consensus
Probab=99.25 E-value=1.3e-12 Score=118.68 Aligned_cols=86 Identities=19% Similarity=0.285 Sum_probs=79.7
Q ss_pred cchhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchH
Q psy11689 3 VDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELS 76 (390)
Q Consensus 3 ~~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~ 76 (390)
.|+.+.+|||=||++|||-|..|+||+| |||.| .|+.|+ +++.|.+||+| |++-..+++
T Consensus 278 ldgfeatknikvimatnridild~allr--------------pgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l- 342 (404)
T KOG0728|consen 278 LDGFEATKNIKVIMATNRIDILDPALLR--------------PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL- 342 (404)
T ss_pred ccccccccceEEEEeccccccccHhhcC--------------CCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH-
Confidence 5888999999999999999999999988 99999 999999 67789999998 778899999
Q ss_pred HHHHHhhcCCccccccccccccchhhh
Q psy11689 77 ENVQREEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 77 ~~la~~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
+.+|..-.|.+|+++.+.|.||++++.
T Consensus 343 ~kiaekm~gasgaevk~vcteagm~al 369 (404)
T KOG0728|consen 343 RKIAEKMPGASGAEVKGVCTEAGMYAL 369 (404)
T ss_pred HHHHHhCCCCccchhhhhhhhhhHHHH
Confidence 999999999999999999999999844
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.24 E-value=2.6e-11 Score=110.02 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=64.5
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~ 219 (390)
...++++.|.+.+++.+.-++...... -....+++||||||+||||||+.||++.+.++...+++.+-.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 444559999999999987776542111 134568999999999999999999999999988777654311
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
...+..++... ....||||||++++- +...+-....+..
T Consensus 89 ---~~dl~~il~~l--~~~~ILFIDEIHRln-k~~qe~LlpamEd 127 (233)
T PF05496_consen 89 ---AGDLAAILTNL--KEGDILFIDEIHRLN-KAQQEILLPAMED 127 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC---HHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHhc--CCCcEEEEechhhcc-HHHHHHHHHHhcc
Confidence 12233333332 356799999999963 3333334444444
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.24 E-value=4.3e-11 Score=128.51 Aligned_cols=102 Identities=24% Similarity=0.309 Sum_probs=82.3
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLA 208 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~ 208 (390)
....++++.|-+.....+.+.+.. ....+++|+||||||||++++++|... +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 344566888888777766655532 345679999999999999999999876 566777
Q ss_pred ccccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 209 ASAAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 209 i~~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
++...+. ..|.|+.++.++.+|..+....|+||||||++.+++.+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g 290 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAG 290 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccC
Confidence 7777776 46789999999999999988889999999999998653
No 53
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.6e-11 Score=123.82 Aligned_cols=202 Identities=26% Similarity=0.353 Sum_probs=144.4
Q ss_pred ccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEE
Q psy11689 162 WPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAIL 241 (390)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il 241 (390)
++..+++.++.+++.++.+++++||||+|||++++++|.. +..+..++.++....+.+..+...+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 3567888899999999999999999999999999999999 655578889999999999999999999999999999999
Q ss_pred EEcCCCCCCChhhHH------HHHHHhhcC--CCcEEEeccCHHHHHhcCchhHHHhHHHhh--------hhcCCchhHH
Q psy11689 242 FIDEIERTYNCEYRE------QTADNAKKP--RIPRTNGGYREQTADTANKPRIQRTKREYR--------EQTADTAHKT 305 (390)
Q Consensus 242 ~lDEid~~l~~r~~~------~~~~~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l--------~~l~~~~~r~ 305 (390)
++||++.+.+.+... .....+... ... ... +.+++.++++.......... ..++....+.
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 999999999877650 111111110 111 111 22233455544433222111 1233334444
Q ss_pred HhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc------ccccChhhhhhhHHHH
Q psy11689 306 RISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE------YREQTADTANKPRIQR 372 (390)
Q Consensus 306 ~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~------~~~i~~~~~~~~~~~~ 372 (390)
.|. ....+... ..+.++..++..+.||+ ++|+..++..+...+.++. ...++.+++..++-+.
T Consensus 157 ei~--~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~ 226 (494)
T COG0464 157 EIL--QIHTRLMFLGPPGTGKTLAARTVGKS--GADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKV 226 (494)
T ss_pred HHH--HHHHhcCCCcccccHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhc
Confidence 442 12222222 33688999999999999 9999999999999999885 3367888888777554
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=99.19 E-value=1.1e-10 Score=119.63 Aligned_cols=105 Identities=23% Similarity=0.375 Sum_probs=79.1
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~ 211 (390)
..|.++|....++++.|.+..++.+..++..... + .++..+||+||||+|||++++++|++.+++++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 3688888888999999999999999998864221 1 237789999999999999999999999998888877
Q ss_pred ccccCcchhhHHHHHHHHHHHHHh------cCCeEEEEcCCCCCCC
Q psy11689 212 AQLYSPYVGEAEQNVTQLFHRARL------AAPAILFIDEIERTYN 251 (390)
Q Consensus 212 ~~~~~~~~g~~~~~i~~~f~~A~~------~~p~il~lDEid~~l~ 251 (390)
++... ...+..+...+.. ..+.||+|||+|.+..
T Consensus 73 sd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 73 SDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred ccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 65321 1123333322221 2578999999999875
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.17 E-value=1.2e-10 Score=112.43 Aligned_cols=209 Identities=19% Similarity=0.190 Sum_probs=114.3
Q ss_pred CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689 143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA 222 (390)
Q Consensus 143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~ 222 (390)
++++.|.++.++.+...+...... -..+.+++|+||||||||+|++++|++.+.++..+..+....
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 348999999999998877532111 134567999999999999999999999887655444322111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEec-----------cCHHHHHhcCchhH-HHh
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGG-----------YREQTADTANKPRI-QRT 290 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~-----------~~~~~i~~t~~~~~-~r~ 290 (390)
...+...+.. ...+.++||||++.+-+.. .+.....+.......+... .....+.+++++.. ...
T Consensus 69 ~~~l~~~l~~--~~~~~vl~iDEi~~l~~~~-~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~ 145 (305)
T TIGR00635 69 PGDLAAILTN--LEEGDVLFIDEIHRLSPAV-EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSP 145 (305)
T ss_pred chhHHHHHHh--cccCCEEEEehHhhhCHHH-HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHH
Confidence 1112222222 2457899999999876542 2222222211111111100 11222344444321 111
Q ss_pred HHH---hhhh--cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhh
Q psy11689 291 KRE---YREQ--TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTA 365 (390)
Q Consensus 291 ~~~---~l~~--l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~ 365 (390)
++. .... ..+..+...++...........++-.+..+++.+.|+ ...+..++..+...|...+...++.+.+
T Consensus 146 l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~---pR~~~~ll~~~~~~a~~~~~~~it~~~v 222 (305)
T TIGR00635 146 LRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT---PRIANRLLRRVRDFAQVRGQKIINRDIA 222 (305)
T ss_pred HHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC---cchHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 111 1111 1233444444321111112222333456788888886 5667788888777776666677888888
Q ss_pred hhhHHH
Q psy11689 366 NKPRIQ 371 (390)
Q Consensus 366 ~~~~~~ 371 (390)
.++.-.
T Consensus 223 ~~~l~~ 228 (305)
T TIGR00635 223 LKALEM 228 (305)
T ss_pred HHHHHH
Confidence 877754
No 56
>KOG0744|consensus
Probab=99.17 E-value=7.3e-12 Score=117.59 Aligned_cols=110 Identities=22% Similarity=0.301 Sum_probs=79.9
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhh-hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---------chhccccccc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFE-RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---------RVLAASAAQL 214 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---------~~~~i~~~~~ 214 (390)
.+.--.+.|+++.......+...+.-. .--+...+-+||+||||||||+|++++|..+.+ ..+.+++..+
T Consensus 143 sLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL 222 (423)
T KOG0744|consen 143 SLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL 222 (423)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH
Confidence 444445567777666554333332221 222455678999999999999999999987653 3457888999
Q ss_pred cCcchhhHHHHHHHHHHHHHhc-----CCeEEEEcCCCCCCChhh
Q psy11689 215 YSPYVGEAEQNVTQLFHRARLA-----APAILFIDEIERTYNCEY 254 (390)
Q Consensus 215 ~~~~~g~~~~~i~~~f~~A~~~-----~p~il~lDEid~~l~~r~ 254 (390)
+++|.+++.+.+.++|+..... .-..++|||++++...|.
T Consensus 223 FSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~ 267 (423)
T KOG0744|consen 223 FSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAART 267 (423)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHH
Confidence 9999999999999999976443 223778999999987774
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.17 E-value=2.7e-11 Score=129.21 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=67.3
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC--------
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-------- 216 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-------- 216 (390)
.|.|.+.+++.+.+.+...... +.. .-+|...+||+||||||||++|+++|..++.+++.++++++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g---l~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG---LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc---ccC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 4788888888888887642110 000 1123457999999999999999999999999998888776542
Q ss_pred ----cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 217 ----PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 217 ----~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
+|.|.... ..+....+..+.+||||||+|.+-
T Consensus 535 G~~~gyvg~~~~--g~L~~~v~~~p~sVlllDEieka~ 570 (758)
T PRK11034 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_pred CCCCCccccccc--chHHHHHHhCCCcEEEeccHhhhh
Confidence 12221111 122233345566899999999973
No 58
>KOG0734|consensus
Probab=99.12 E-value=9.1e-12 Score=123.49 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=73.4
Q ss_pred hhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHH
Q psy11689 5 LVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSEN 78 (390)
Q Consensus 5 ~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~ 78 (390)
+..-.--|+|||+||+++..|+||.| ||||| +|.+|. |-.||.+||++ ...+++||+ ..
T Consensus 433 GF~qNeGiIvigATNfpe~LD~AL~R--------------PGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~-~i 497 (752)
T KOG0734|consen 433 GFKQNEGIIVIGATNFPEALDKALTR--------------PGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP-KI 497 (752)
T ss_pred CcCcCCceEEEeccCChhhhhHHhcC--------------CCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH-hH
Confidence 33334468999999999999999999 99999 777777 47899999987 447789999 99
Q ss_pred HHHhhcCCccccccccccccchhhhc
Q psy11689 79 VQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 79 la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
||+=|.||+|+||+.++..|+.++..
T Consensus 498 iARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 498 IARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred hccCCCCCchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988654
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.11 E-value=3.2e-10 Score=109.78 Aligned_cols=67 Identities=33% Similarity=0.526 Sum_probs=56.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcC----CeEEEEcCCCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAA----PAILFIDEIERTY 250 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~----p~il~lDEid~~l 250 (390)
.-.+.+|+|||||||||||+.||...+.+|..++.. ..+.+.++.+|+.|+... ..|||+||++++-
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-------cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC
Confidence 556799999999999999999999999999888763 235577899999995543 4799999999864
No 60
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.10 E-value=3e-10 Score=120.31 Aligned_cols=114 Identities=22% Similarity=0.232 Sum_probs=88.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-------------------------------------------------- 201 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-------------------------------------------------- 201 (390)
++.+++++.+.+.|++|||||||+|.+.+-
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p 572 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP 572 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC
Confidence 567889999999999999999999999911
Q ss_pred -------------hccchhccccccccCcchh------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 202 -------------SVYRVLAASAAQLYSPYVG------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 202 -------------~~~~~~~i~~~~~~~~~~g------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
++++-+....|......++ .+.|+.+-++++|..++|.|+++||+.+.+|..++..+.+++
T Consensus 573 ~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L 652 (709)
T COG2274 573 EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652 (709)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH
Confidence 1111111111212222222 245777789999999999999999999999999999999999
Q ss_pred hcCC--CcEEEeccCHHHHHhcCch
Q psy11689 263 KKPR--IPRTNGGYREQTADTANKP 285 (390)
Q Consensus 263 ~~~~--~~~i~~~~~~~~i~~t~~~ 285 (390)
.... .|.+.++||+.++..+++-
T Consensus 653 ~~~~~~~T~I~IaHRl~ti~~adrI 677 (709)
T COG2274 653 LQILQGRTVIIIAHRLSTIRSADRI 677 (709)
T ss_pred HHHhcCCeEEEEEccchHhhhccEE
Confidence 8765 9999999999999888873
No 61
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.10 E-value=4.5e-10 Score=100.62 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHH---hhcCCCcEEEeccCHHHH
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADN---AKKPRIPRTNGGYREQTA 279 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~---~~~~~~~~i~~~~~~~~i 279 (390)
+.|+.+.+.++|...+|.++++||+++.+|+.--.+..+. +...+.|.+.++|.+...
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA 199 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA 199 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence 3466677999999999999999999999999987766554 455689999999976443
No 62
>KOG0652|consensus
Probab=99.09 E-value=4.3e-11 Score=109.47 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=72.7
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
..-|=||++|||-|..||||+| .||++ .|+.|. .+++|.+|++| |..++||++ ++||+.
T Consensus 308 ~~~vKviAATNRvDiLDPALlR--------------SGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf-eELaRs 372 (424)
T KOG0652|consen 308 DDRVKVIAATNRVDILDPALLR--------------SGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF-EELARS 372 (424)
T ss_pred ccceEEEeecccccccCHHHhh--------------cccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH-HHHhhc
Confidence 3457899999999999999999 99999 788777 57889999998 789999999 999999
Q ss_pred hcCCccccccccccccchhhhc
Q psy11689 83 EEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
|.+|.|++..++|.|+++-+..
T Consensus 373 TddFNGAQcKAVcVEAGMiALR 394 (424)
T KOG0652|consen 373 TDDFNGAQCKAVCVEAGMIALR 394 (424)
T ss_pred ccccCchhheeeehhhhHHHHh
Confidence 9999999999999999997543
No 63
>KOG0729|consensus
Probab=99.09 E-value=3.2e-11 Score=110.60 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=76.0
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccCCcccchH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKLNEEVELS 76 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~~~~v~l~ 76 (390)
|+..---||=|+++|||++++|+||+| |||++ ++.||+ .++|-+|++| |....|+-+
T Consensus 309 dgfdprgnikvlmatnrpdtldpallr--------------pgrldrkvef~lpd-legrt~i~kihaksmsverdir~- 372 (435)
T KOG0729|consen 309 DGFDPRGNIKVLMATNRPDTLDPALLR--------------PGRLDRKVEFGLPD-LEGRTHIFKIHAKSMSVERDIRF- 372 (435)
T ss_pred cCCCCCCCeEEEeecCCCCCcCHhhcC--------------CcccccceeccCCc-ccccceeEEEeccccccccchhH-
Confidence 444455699999999999999999999 99999 888999 9999999999 777788888
Q ss_pred HHHHHhhcCCccccccccccccchhhhc
Q psy11689 77 ENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 77 ~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
+-||+++.+-+|++|+++|.|+++++..
T Consensus 373 ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 373 ELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred HHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 8899999999999999999999998554
No 64
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.3e-09 Score=101.25 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=116.3
Q ss_pred CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689 142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~ 221 (390)
.+++..|.+.+|+.+.-++...... -....++||+||||.||||||..+|++.|.++...+++.+-..
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~---- 91 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP---- 91 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh----
Confidence 3448999999999999888763222 2456789999999999999999999999998887777655321
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcE----------EEeccCHHH-HHh-cCchhHHH
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPR----------TNGGYREQT-ADT-ANKPRIQR 289 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~----------i~~~~~~~~-i~~-t~~~~~~r 289 (390)
..+..++.. ...-+|+|+|||+++...- ++-....+..-.+-. +...-.+++ |++ |.-.-+-.
T Consensus 92 --gDlaaiLt~--Le~~DVLFIDEIHrl~~~v-EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~ 166 (332)
T COG2255 92 --GDLAAILTN--LEEGDVLFIDEIHRLSPAV-EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTN 166 (332)
T ss_pred --hhHHHHHhc--CCcCCeEEEehhhhcChhH-HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccc
Confidence 223333333 3455799999999976542 222222222211111 111112222 333 33333333
Q ss_pred hHHHhhhh---cC--CchhHHHhh-cccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChh
Q psy11689 290 TKREYREQ---TA--DTAHKTRIS-RTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTAD 363 (390)
Q Consensus 290 ~~~~~l~~---l~--~~~~r~~I~-~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~ 363 (390)
+++..... +. +..+-..|+ .+.... ....++-...+||++..|- +.=--.|+++-+-+|.-++...|+.+
T Consensus 167 PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-~i~i~~~~a~eIA~rSRGT---PRIAnRLLrRVRDfa~V~~~~~I~~~ 242 (332)
T COG2255 167 PLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-GIEIDEEAALEIARRSRGT---PRIANRLLRRVRDFAQVKGDGDIDRD 242 (332)
T ss_pred hhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-CCCCChHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 33322222 11 122222222 111111 1112223345677777764 33335577788888877777777776
Q ss_pred hhhhhHH
Q psy11689 364 TANKPRI 370 (390)
Q Consensus 364 ~~~~~~~ 370 (390)
-..++..
T Consensus 243 ia~~aL~ 249 (332)
T COG2255 243 IADKALK 249 (332)
T ss_pred HHHHHHH
Confidence 6666653
No 65
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=7.9e-10 Score=101.44 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=75.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----------------------------cchh---------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----------------------------YRVL--------------- 207 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----------------------------~~~~--------------- 207 (390)
++.+.+++.+.|.||+|||||||.+.+|.-.. +|..
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 56788999999999999999999999991100 0100
Q ss_pred --------------ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCC
Q psy11689 208 --------------AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRI 267 (390)
Q Consensus 208 --------------~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~ 267 (390)
.+........|..+ +.++.+..+++|....|.|+++||+.+.+|.-+.....+.+ ...+.
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~ 182 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRK 182 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCC
Confidence 11111222333322 34566679999999999999999999999998877665544 44578
Q ss_pred cEEEeccCH
Q psy11689 268 PRTNGGYRE 276 (390)
Q Consensus 268 ~~i~~~~~~ 276 (390)
|.+.++|.+
T Consensus 183 TvllVTHdi 191 (248)
T COG1116 183 TVLLVTHDV 191 (248)
T ss_pred EEEEEeCCH
Confidence 899999975
No 66
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.05 E-value=4.1e-11 Score=133.73 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=68.1
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc------ccCCcc-cchHHHH
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF------TKLNEE-VELSENV 79 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~------~~~~~~-v~l~~~l 79 (390)
..+|+||||||||+.+|+||+| ||||| .|.||. +..+|++++.+ ..+..+ +++ +.+
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLR--------------PGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl-~~L 1834 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIA--------------PNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHT-NGF 1834 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcC--------------CCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccH-HHH
Confidence 4589999999999999999999 99999 777766 35688888764 234433 678 889
Q ss_pred HHhhcCCccccccccccccchhhhcC
Q psy11689 80 QREEEGIAGENLQRGGGEEGIELREG 105 (390)
Q Consensus 80 a~~t~G~~g~~l~~~~~ea~~~~~~~ 105 (390)
|+.|.||+||||+++|.||+..+...
T Consensus 1835 A~~T~GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1835 GSITMGSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999875544
No 67
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8e-11 Score=120.74 Aligned_cols=80 Identities=26% Similarity=0.407 Sum_probs=71.3
Q ss_pred eeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 11 TVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 11 ~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
.|+++++|||+|..|+||+| ||||+ .|+.|| -.+|++|+++ .+++++||+ ..+|+.|
T Consensus 288 gviviaaTNRpdVlD~ALlR--------------pgRFDRqI~V~~PD-i~gRe~IlkvH~~~~~l~~~Vdl-~~iAr~t 351 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLR--------------PGRFDRQILVELPD-IKGREQILKVHAKNKPLAEDVDL-KKIARGT 351 (596)
T ss_pred ceEEEecCCCcccchHhhcC--------------CCCcceeeecCCcc-hhhHHHHHHHHhhcCCCCCcCCH-HHHhhhC
Confidence 58999999999999999999 99999 566666 7999999997 668899999 8899999
Q ss_pred cCCccccccccccccchhhhcCC
Q psy11689 84 EGIAGENLQRGGGEEGIELREGG 106 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~~~~~ 106 (390)
.||+|++|..++.|++......+
T Consensus 352 pGfsGAdL~nl~NEAal~aar~n 374 (596)
T COG0465 352 PGFSGADLANLLNEAALLAARRN 374 (596)
T ss_pred CCcccchHhhhHHHHHHHHHHhc
Confidence 99999999999999998755544
No 68
>KOG0058|consensus
Probab=99.04 E-value=7e-10 Score=114.52 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=87.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHH----------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLA---------------------------------------------------- 199 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia---------------------------------------------------- 199 (390)
++.++||+.+.|+||+|+||||++..+-
T Consensus 488 sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~ 567 (716)
T KOG0058|consen 488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD 567 (716)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC
Confidence 5678999999999999999999999997
Q ss_pred -----------HhhccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 200 -----------AHSVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 200 -----------~~~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
+.++++-+....++.++..+|+ +.|+.+-+.++|...+|+|+++||+++.+|..++..+.+.+
T Consensus 568 ~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL 647 (716)
T KOG0058|consen 568 NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL 647 (716)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence 1122222222233333333443 34777889999999999999999999999999988887777
Q ss_pred hc--CCCcEEEeccCHHHHHhcCc
Q psy11689 263 KK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 263 ~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+ ...|.+.++||+.+|..+++
T Consensus 648 ~~~~~~rTVlvIAHRLSTV~~Ad~ 671 (716)
T KOG0058|consen 648 DRLMQGRTVLVIAHRLSTVRHADQ 671 (716)
T ss_pred HHhhcCCeEEEEehhhhHhhhccE
Confidence 53 36889999999999988875
No 69
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.04 E-value=4e-10 Score=121.08 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=119.2
Q ss_pred heeeeeccccCCC-----cchhhHHHHhhcccccCCcccCCCccceeeCCC-CCccCcccccc-----ccCC----cccc
Q psy11689 10 NTVLMYFAKHRGC-----TADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPT-APQGRETELPF-----TKLN----EEVE 74 (390)
Q Consensus 10 n~~~~~~~~n~~~-----~~d~al~r~~~~~~~l~~~l~~~gr~~~i~ip~-~~~~r~~~l~~-----~~~~----~~v~ 74 (390)
.++.+||+||..+ ..|+||.| ||..|+++. +.+++.+||+. ...+ .+-.
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~r----------------Rf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~a 373 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSR----------------RFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEA 373 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHH----------------hCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHH
Confidence 3588999999633 46777777 889777777 46677788774 1111 1223
Q ss_pred hHHHHHHhhcCCccccccc-----cccccchhhhcCCCCCCCCCCCCchhhHhhhcccccC-----cccccccc-----C
Q psy11689 75 LSENVQREEEGIAGENLQR-----GGGEEGIELREGGQRNGGEGGIGLNERVQRIGEGREE-----RRDWEGEE-----E 139 (390)
Q Consensus 75 l~~~la~~t~G~~g~~l~~-----~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----~ 139 (390)
+ +.+++.+..|.+....+ +..+++........ .. ....+............. ...+++.. .
T Consensus 374 l-~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~-~~--~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~ 449 (731)
T TIGR02639 374 L-EAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPK-AK--KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLE 449 (731)
T ss_pred H-HHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcc-cc--cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHH
Confidence 3 77888888886554322 12333332211100 00 011111111111111111 11111000 0
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAI----PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY 215 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~ 215 (390)
...-..|.|.+..++.+...+... ..++ .+...+||+||+|||||+||+++|..++.+++.++++++.
T Consensus 450 ~~l~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 450 KNLKAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred HHHhcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 000114666666666666665431 1222 2334589999999999999999999999888888876654
Q ss_pred Cc------------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 216 SP------------YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 216 ~~------------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
.. |.|..+ ...+....+..+.+||+|||+|.+- +...+...+.+
T Consensus 522 ~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~-~~~~~~Ll~~l 577 (731)
T TIGR02639 522 EKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAH-PDIYNILLQVM 577 (731)
T ss_pred hcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcC-HHHHHHHHHhh
Confidence 31 222221 1223444456677899999999763 33333333333
No 70
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.02 E-value=3.2e-09 Score=113.46 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=75.2
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhcc
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAA 209 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i 209 (390)
...++.+.|-+.....+.+++.. ....++||+||||||||++++++|... +..++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 44455677777776666665533 245678999999999999999999764 2333444
Q ss_pred cccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 210 SAAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 210 ~~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
+...+. ..|.|+.++.++.+|..+....++||||||++.+++.+
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g 294 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG 294 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccC
Confidence 444444 34678888999999999988889999999999998654
No 71
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.01 E-value=8.7e-10 Score=110.23 Aligned_cols=108 Identities=29% Similarity=0.349 Sum_probs=77.5
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhh---cCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-Ccchh
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFER---LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVG 220 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~~g 220 (390)
.|.|.+.+++.+..++..+++....... -...+..++||+||||||||++|+++|..++.+|+.+++..+. .+|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 4899999999997777543333211110 0112457899999999999999999999999999999988765 46777
Q ss_pred hHHHH-HHHHHHH----HHhcCCeEEEEcCCCCCCCh
Q psy11689 221 EAEQN-VTQLFHR----ARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 221 ~~~~~-i~~~f~~----A~~~~p~il~lDEid~~l~~ 252 (390)
..... +..++.. .....++||||||+|.+...
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 64433 4444432 23457899999999999754
No 72
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.00 E-value=2.6e-09 Score=104.22 Aligned_cols=69 Identities=26% Similarity=0.401 Sum_probs=53.6
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----chh
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----RVL 207 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----~~~ 207 (390)
.|.+++....++++.|.+.+++.+...+.. ....+++|+||||||||+++++++++... +++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 588888888888999999999998887753 12236999999999999999999988642 345
Q ss_pred ccccccc
Q psy11689 208 AASAAQL 214 (390)
Q Consensus 208 ~i~~~~~ 214 (390)
.+++.++
T Consensus 71 ~i~~~~~ 77 (337)
T PRK12402 71 EFNVADF 77 (337)
T ss_pred Eechhhh
Confidence 5555443
No 73
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.00 E-value=2.3e-09 Score=105.96 Aligned_cols=211 Identities=12% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---------cchhccccccc
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---------YRVLAASAAQL 214 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---------~~~~~i~~~~~ 214 (390)
+.+.|-++..+.+...+..... + ..+..++|+||||||||+++++++.++. +.++++++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 3688889988888887754221 1 3456799999999999999999997643 45666666443
Q ss_pred cCcc-------------------hh-hHHHHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--------
Q psy11689 215 YSPY-------------------VG-EAEQNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKKP-------- 265 (390)
Q Consensus 215 ~~~~-------------------~g-~~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~~-------- 265 (390)
...+ .+ ...+.+..++.... ..++.||+|||+|.+.+.. +.....+...
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--DDLLYQLSRARSNGDLDN 163 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--cHHHHhHhccccccCCCC
Confidence 2210 00 01222344444433 3457899999999997332 1222222211
Q ss_pred -CCcEEEeccCHHHHHhcCchhHHHhHHHhhhhcCC--chhHHHhhccccc--ccCCCCCCCCcch---hhhcCCCCCCC
Q psy11689 266 -RIPRTNGGYREQTADTANKPRIQRTKREYREQTAD--TAHKTRISRTNRG--YREKTADTANKPR---IPRTNRGYREY 337 (390)
Q Consensus 266 -~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~~--~~~r~~I~~~n~~--~r~~~~~~vdl~~---la~~t~gfs~~ 337 (390)
.+..+..++.+..... -.+++...+......++. ..+...|+..... ......++.-++. ++..+.|.
T Consensus 164 ~~v~lI~i~n~~~~~~~-l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd--- 239 (365)
T TIGR02928 164 AKVGVIGISNDLKFREN-LDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD--- 239 (365)
T ss_pred CeEEEEEEECCcchHhh-cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC---
Confidence 1222333333222111 111121111101111222 3334444322111 1111111111222 33444454
Q ss_pred cHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689 338 SAQNANTANKPRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 338 gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
....-.++..|...|..++...|+.+++.++.
T Consensus 240 ~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~ 271 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQ 271 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 34455688899998988888899999999865
No 74
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=1.8e-09 Score=89.94 Aligned_cols=80 Identities=29% Similarity=0.405 Sum_probs=62.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccc---hhccccccccCcc--------------hhhHHHHHHHHHHHHHhcCCeE
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYR---VLAASAAQLYSPY--------------VGEAEQNVTQLFHRARLAAPAI 240 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~---~~~i~~~~~~~~~--------------~g~~~~~i~~~f~~A~~~~p~i 240 (390)
+..++|+||||||||++++.+|..+... ++.+++......+ ..........++..+....|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5679999999999999999999998765 6666665543321 1234456778999999888999
Q ss_pred EEEcCCCCCCChhhHHH
Q psy11689 241 LFIDEIERTYNCEYREQ 257 (390)
Q Consensus 241 l~lDEid~~l~~r~~~~ 257 (390)
|++||++.+.+......
T Consensus 82 iiiDei~~~~~~~~~~~ 98 (148)
T smart00382 82 LILDEITSLLDAEQEAL 98 (148)
T ss_pred EEEECCcccCCHHHHHH
Confidence 99999999998766543
No 75
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.99 E-value=2.3e-09 Score=116.59 Aligned_cols=100 Identities=22% Similarity=0.300 Sum_probs=81.3
Q ss_pred CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchhccc
Q psy11689 141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVLAAS 210 (390)
Q Consensus 141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~~i~ 210 (390)
..++.+.|-++..+.+.+++.. ....+++|+||||||||++++.+|.... .+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3444788888888887777643 3566899999999999999999997753 5667777
Q ss_pred ccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 211 AAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 211 ~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
...+. ..|.|+.++.++.+|..+....+.||||||++.+++..
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g 287 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAG 287 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCC
Confidence 77666 46778889999999999988889999999999998754
No 76
>KOG0727|consensus
Probab=98.98 E-value=1.1e-10 Score=106.28 Aligned_cols=87 Identities=28% Similarity=0.413 Sum_probs=71.0
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCCCCccCcccccc------ccCCcccchH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPTAPQGRETELPF------TKLNEEVELS 76 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~~~~~r~~~l~~------~~~~~~v~l~ 76 (390)
|+..-+-||=||++|||.|++||||+| |||++ .|+.|. +.-|..-|-| |.++++||+
T Consensus 287 dgfdq~~nvkvimatnradtldpallr--------------pgrldrkiefpl-pdrrqkrlvf~titskm~ls~~vdl- 350 (408)
T KOG0727|consen 287 DGFDQTTNVKVIMATNRADTLDPALLR--------------PGRLDRKIEFPL-PDRRQKRLVFSTITSKMNLSDEVDL- 350 (408)
T ss_pred cCcCcccceEEEEecCcccccCHhhcC--------------CccccccccCCC-CchhhhhhhHHhhhhcccCCcccCH-
Confidence 455556799999999999999999999 99999 777776 2233333333 889999999
Q ss_pred HHHHHhhcCCccccccccccccchhhhcCC
Q psy11689 77 ENVQREEEGIAGENLQRGGGEEGIELREGG 106 (390)
Q Consensus 77 ~~la~~t~G~~g~~l~~~~~ea~~~~~~~~ 106 (390)
+.+.....-++|++|.++|.|+++.+...+
T Consensus 351 e~~v~rpdkis~adi~aicqeagm~avr~n 380 (408)
T KOG0727|consen 351 EDLVARPDKISGADINAICQEAGMLAVREN 380 (408)
T ss_pred HHHhcCccccchhhHHHHHHHHhHHHHHhc
Confidence 888889999999999999999999865543
No 77
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.98 E-value=2.4e-09 Score=108.44 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=98.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
...++||||||+|||+|+++++++. +..++++++.++...+.......-..-|...+..++++|+|||++.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 3469999999999999999999875 24556677666544433221111112344444457899999999999876
Q ss_pred hhHH-HHH---HHhhcCCCcEEEec-cCHHHHHhcCchhHHHhHH-Hhh--hhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689 253 EYRE-QTA---DNAKKPRIPRTNGG-YREQTADTANKPRIQRTKR-EYR--EQTADTAHKTRISRTNRGYREKTADTANK 324 (390)
Q Consensus 253 r~~~-~~~---~~~~~~~~~~i~~~-~~~~~i~~t~~~~~~r~~~-~~l--~~l~~~~~r~~I~~~n~~~r~~~~~~vdl 324 (390)
...+ ... ..+...+...+..+ +.+..+..... ++...+. ... ...|+...+..|+......+....++--+
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~-rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~ 288 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD-RLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVL 288 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH-HHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5332 222 22223333444444 44443332211 2211111 111 12344556666643222222222333335
Q ss_pred chhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689 325 PRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
..||++..| + .++|+.++.+-...+...+ ..+|.+...+..
T Consensus 289 ~~Ia~~~~~-~--~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L 329 (440)
T PRK14088 289 NFVAENVDD-N--LRRLRGAIIKLLVYKETTG-EEVDLKEAILLL 329 (440)
T ss_pred HHHHhcccc-C--HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 667776654 3 6778888777655544333 345655554444
No 78
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.97 E-value=5e-09 Score=104.67 Aligned_cols=217 Identities=13% Similarity=0.104 Sum_probs=113.5
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCc--
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSP-- 217 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~-- 217 (390)
.+.|-++..+++...+..... -..+..++|+||||+|||++++.++.++ ++.++++++......
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 577777777777777643211 1245679999999999999999999775 356667766533211
Q ss_pred --------ch-------h-hHHHHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhc-------CCCcEEEec
Q psy11689 218 --------YV-------G-EAEQNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKK-------PRIPRTNGG 273 (390)
Q Consensus 218 --------~~-------g-~~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~-------~~~~~i~~~ 273 (390)
.. + ...+.+..+..... ...+.||+|||+|.+....... ....+.. ..+..+..+
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~-~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGND-VLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCch-HHHHHHHhhhccCCCeEEEEEEE
Confidence 00 1 11222233333332 2356899999999987322222 2222211 122334444
Q ss_pred cCHHHHHhcCchhHHHhHHHhhhhcCC--chhHHHhhcccc--cccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689 274 YREQTADTANKPRIQRTKREYREQTAD--TAHKTRISRTNR--GYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR 349 (390)
Q Consensus 274 ~~~~~i~~t~~~~~~r~~~~~l~~l~~--~~~r~~I~~~n~--~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~ 349 (390)
+....... -.+++...+......++. ..+...|+.... .......++..++.+++.+.+.+-.....-.++..|.
T Consensus 181 ~~~~~~~~-l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 181 SDLTFLYI-LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred CCcchhhh-cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 43322111 112222111111112222 233333331111 1111122323345666666443301334457888999
Q ss_pred HHHHHccccccChhhhhhhHHHH
Q psy11689 350 IQRTKREYREQTADTANKPRIQR 372 (390)
Q Consensus 350 ~~a~~r~~~~i~~~~~~~~~~~~ 372 (390)
..|..++...|+.+++.+++-..
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH
Confidence 99988888899999999887543
No 79
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.96 E-value=2.1e-09 Score=109.49 Aligned_cols=187 Identities=12% Similarity=0.114 Sum_probs=102.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
...++||||||+|||+|++++++++ +..++++++.++...+...........|... ...+++|+|||++.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCC
Confidence 3569999999999999999999886 3446677776665444333222112233332 236889999999998776
Q ss_pred hhHHH-HHH---HhhcCCCcEEEeccC-HHHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689 253 EYREQ-TAD---NAKKPRIPRTNGGYR-EQTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTANK 324 (390)
Q Consensus 253 r~~~~-~~~---~~~~~~~~~i~~~~~-~~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl 324 (390)
+.... ... .+...+...+..++. +..+..- .+++...+. ...-..|+.+.+..|+......+....++--+
T Consensus 227 ~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l-~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l 305 (450)
T PRK00149 227 ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL-EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVL 305 (450)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH-HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 53322 222 222233334444433 2222221 122221111 01112345566666653333222323333335
Q ss_pred chhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689 325 PRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRI 370 (390)
Q Consensus 325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~ 370 (390)
+.||++..| + ..+|+.++......+...+ +.+|.+.+.+..-
T Consensus 306 ~~ia~~~~~-~--~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~ 347 (450)
T PRK00149 306 EFIAKNITS-N--VRELEGALNRLIAYASLTG-KPITLELAKEALK 347 (450)
T ss_pred HHHHcCcCC-C--HHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHH
Confidence 667776654 3 6788888887776665443 4567666555543
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=98.96 E-value=8.6e-09 Score=100.29 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=67.6
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----hh
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR-----VL 207 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~-----~~ 207 (390)
.|.++|.+..++++.|.+++.+.|+.++.. ....+++|+||||||||+++.++|+++..+ ++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 588888888999999999999888876543 123469999999999999999999987322 23
Q ss_pred ccccccccCcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCC
Q psy11689 208 AASAAQLYSPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYN 251 (390)
Q Consensus 208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~ 251 (390)
.++.++..+ .......+ ..|.... ...+.|++|||+|.+-.
T Consensus 69 eln~sd~~~--~~~vr~~i-~~~~~~~~~~~~~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 69 ELNASDDRG--IDVVRNKI-KMFAQKKVTLPPGRHKIVILDEADSMTS 113 (319)
T ss_pred eeccccccc--HHHHHHHH-HHHHhccccCCCCCeEEEEEechhhcCH
Confidence 333332111 01111111 1222211 12467999999999754
No 81
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.96 E-value=1e-09 Score=118.61 Aligned_cols=100 Identities=25% Similarity=0.331 Sum_probs=75.4
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccc---------c
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQL---------Y 215 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~---------~ 215 (390)
++.|++.+++.+.+.+...... +...+..++|+||||||||++++++|..++.+++.++.... .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 5789999999998876542211 11245579999999999999999999999988887754332 1
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
..|.|.....+.+.|..+....| ||||||+|.+...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~ 429 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS 429 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc
Confidence 34566666677778888876666 8999999999753
No 82
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.96 E-value=4.7e-09 Score=95.95 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcCch
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTANKP 285 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~~~ 285 (390)
+.+..+.++++|....|.+|+.||+...+|..+...+...+... +.+.+.++|.+.....++|.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~ 212 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRV 212 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEE
Confidence 34666789999999999999999999999999998887766443 67899999998887777763
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=7.9e-09 Score=105.79 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=115.5
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc--
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA-- 208 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~-- 208 (390)
...|..++....|+++.|.+.+.+.+...+... ..+..+||+||+|+|||++|+++|+.+++....
T Consensus 8 y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~ 75 (507)
T PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE 75 (507)
T ss_pred ccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 455777777888889999999999888766431 345789999999999999999999887642110
Q ss_pred ----------cccc--------ccc--CcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 209 ----------ASAA--------QLY--SPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 209 ----------i~~~--------~~~--~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
-.|. ++. ......+...++.++..+... ...|+||||++.+-. ..-+.....+..
T Consensus 76 ~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-~a~naLLk~LEe 154 (507)
T PRK06645 76 NTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-GAFNALLKTLEE 154 (507)
T ss_pred CcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-HHHHHHHHHHhh
Confidence 0000 110 000112335566777666433 356999999997643 223333344443
Q ss_pred CCCcEEEeccCHHHHHhcCchhHHHhHHHhh--hhcCC--chhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHH
Q psy11689 265 PRIPRTNGGYREQTADTANKPRIQRTKREYR--EQTAD--TAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQ 340 (390)
Q Consensus 265 ~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l--~~l~~--~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaD 340 (390)
..-.. .++++++....+..++.... ..+.. ..+...++...........++..+..|++.++| + ..|
T Consensus 155 pp~~~------vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-s--lR~ 225 (507)
T PRK06645 155 PPPHI------IFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-S--ARD 225 (507)
T ss_pred cCCCE------EEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C--HHH
Confidence 21111 11112222222222222111 11111 122111111111111122222335678888877 5 788
Q ss_pred HHHHHHHHHHHHHHccccccChhhhhhh
Q psy11689 341 NANTANKPRIQRTKREYREQTADTANKP 368 (390)
Q Consensus 341 L~~l~~~A~~~a~~r~~~~i~~~~~~~~ 368 (390)
+.+++..+..++... ...||.+++.+.
T Consensus 226 al~~Ldkai~~~~~~-~~~It~~~V~~l 252 (507)
T PRK06645 226 AVSILDQAASMSAKS-DNIISPQVINQM 252 (507)
T ss_pred HHHHHHHHHHhhccC-CCCcCHHHHHHH
Confidence 888888887665322 235777776543
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=7.4e-09 Score=107.39 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=71.4
Q ss_pred ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---------
Q psy11689 137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL--------- 207 (390)
Q Consensus 137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~--------- 207 (390)
++....|++|.|.+.+++.|...+... ..+..+||+||+|+|||++|+++|+.+++..-
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 445556669999999999998887531 23567899999999999999999988764210
Q ss_pred ----cccc---cccc--CcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 208 ----AASA---AQLY--SPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 208 ----~i~~---~~~~--~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
.+.. .++. ..........++.+...+. ..+..|+||||++.+- ....+.....+..
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-~~A~NALLKtLEE 144 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-THSFNALLKTLEE 144 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-HHHHHHHHHHHhc
Confidence 0000 0110 0000112244555555443 2345799999999764 3334445455544
No 85
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.95 E-value=1.2e-10 Score=115.95 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=71.5
Q ss_pred hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHH
Q psy11689 8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQR 81 (390)
Q Consensus 8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~ 81 (390)
-..++.++++||+++.+|+|++| ||||+ .|++|. +.++|+.|+.+ +.+++++++ +.+|+
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR--------------~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~-~~la~ 345 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLR--------------PGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL-EDFVS 345 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcC--------------CCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH-HHHHH
Confidence 34688999999999999999999 99999 777777 46788888887 567889999 88999
Q ss_pred hhcCCccccccccccccchhhhc
Q psy11689 82 EEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 82 ~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
.|+||+|+||..+|.+|++.+..
T Consensus 346 ~t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 346 RPEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987543
No 86
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.94 E-value=3.3e-09 Score=106.58 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=100.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
...++||||+|+|||+|++++++++ +..++++++.++...+.......-...|.... ..+++|+|||++.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 4569999999999999999999876 45566777666544333222111111232222 34789999999998876
Q ss_pred hhHHH-HH---HHhhcCCCcEEEeccC-HHHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689 253 EYREQ-TA---DNAKKPRIPRTNGGYR-EQTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTANK 324 (390)
Q Consensus 253 r~~~~-~~---~~~~~~~~~~i~~~~~-~~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl 324 (390)
+..+. .. ..+.......+..+.. +..+... .+++...+. ......++.+.|..|+......+....++-.+
T Consensus 215 ~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l-~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l 293 (405)
T TIGR00362 215 ERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGL-EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVL 293 (405)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhh-hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 54332 22 2222223333443332 2222221 122221111 11112345566666653333333333343445
Q ss_pred chhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689 325 PRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
..||++..+ + ..+|+.++++-...|...+ +.+|.+.+.+..
T Consensus 294 ~~ia~~~~~-~--~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L 334 (405)
T TIGR00362 294 EFIAKNIRS-N--VRELEGALNRLLAYASLTG-KPITLELAKEAL 334 (405)
T ss_pred HHHHHhcCC-C--HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 667766544 3 7788888887766664433 457766555544
No 87
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.94 E-value=3e-09 Score=115.75 Aligned_cols=101 Identities=25% Similarity=0.307 Sum_probs=77.9
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhcc
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAA 209 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i 209 (390)
...++++.|-+.....+.+++.. ....+++|+||||||||++++++|... +.+++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 44556788887765555555432 355679999999999999999999886 5666777
Q ss_pred cccccc--CcchhhHHHHHHHHHHHHHh-cCCeEEEEcCCCCCCChh
Q psy11689 210 SAAQLY--SPYVGEAEQNVTQLFHRARL-AAPAILFIDEIERTYNCE 253 (390)
Q Consensus 210 ~~~~~~--~~~~g~~~~~i~~~f~~A~~-~~p~il~lDEid~~l~~r 253 (390)
+...+. ..|.|+.++.++.+|..+.. ..|+||||||++.+.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~ 287 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG 287 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCC
Confidence 666655 44778888999999988654 578999999999998764
No 88
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.94 E-value=3.3e-09 Score=108.94 Aligned_cols=104 Identities=22% Similarity=0.306 Sum_probs=76.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh-------ccc------------h--------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-------VYR------------V-------------------------- 206 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~-------~~~------------~-------------------------- 206 (390)
++.+++|..+++.||+|||||+|.|++|+-. ++| +
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 4567899999999999999999999999221 011 0
Q ss_pred --hccccccc---------cCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEec
Q psy11689 207 --LAASAAQL---------YSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGG 273 (390)
Q Consensus 207 --~~i~~~~~---------~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~ 273 (390)
..+...++ |+.... ..++.+.+|+++..++|.++||||..+.+|...+....+.+.. +..+.+.++
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS-~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~ 571 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLS-GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVG 571 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcC-hhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEec
Confidence 00111111 111111 2234467999999999999999999999999999999898888 789999999
Q ss_pred cCH
Q psy11689 274 YRE 276 (390)
Q Consensus 274 ~~~ 276 (390)
|+.
T Consensus 572 Hr~ 574 (604)
T COG4178 572 HRP 574 (604)
T ss_pred cch
Confidence 985
No 89
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=6.8e-09 Score=92.91 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCchhHHHhHHHhhhhcC
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANKPRIQRTKREYREQTA 299 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~ 299 (390)
+.|..+...++|...+|.||++||+.+.+|+-+...+.+.+.. ...|.+.++|.+...+..++ ++.+++...+-
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD----~taFf~~G~Lv 227 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSD----YTAFFYLGELV 227 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhH----hhhhhcccEEE
Confidence 3456667888999999999999999999999887776665544 47899999999987776554 34566666666
Q ss_pred CchhHHHhh
Q psy11689 300 DTAHKTRIS 308 (390)
Q Consensus 300 ~~~~r~~I~ 308 (390)
++.....|+
T Consensus 228 E~g~T~~iF 236 (253)
T COG1117 228 EFGPTDKIF 236 (253)
T ss_pred EEcCHHhhh
Confidence 666666663
No 90
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.92 E-value=1.1e-08 Score=103.15 Aligned_cols=96 Identities=27% Similarity=0.398 Sum_probs=67.8
Q ss_pred cccCCCCCCCccChHHHHHH---HHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689 136 GEEEGAFVPELGGLKGVRAL---MEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA 212 (390)
Q Consensus 136 ~~~~~~~~~~i~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~ 212 (390)
+.+....++++.|.+..... +...+.. ....+++|+||||||||++|+++|...+.+++.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 34445566689998887655 6666532 2345799999999999999999999998888777654
Q ss_pred cccCcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCC
Q psy11689 213 QLYSPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYN 251 (390)
Q Consensus 213 ~~~~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~ 251 (390)
.. ....++.++..+. .....||||||++.+..
T Consensus 71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK 106 (413)
T ss_pred cc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence 21 1233445555543 23678999999998753
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=6.1e-09 Score=106.02 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=46.5
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
|...+.+..++++.|.+.+++.+...+... ..+..+||+|||||||||+|+++|+.++.
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344556667779999999988888776542 24556899999999999999999988764
No 92
>KOG0731|consensus
Probab=98.92 E-value=2.8e-10 Score=118.87 Aligned_cols=85 Identities=27% Similarity=0.384 Sum_probs=72.8
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccC-Ccccch
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKL-NEEVEL 75 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~-~~~v~l 75 (390)
|+-.-.-+|+++++|||+|-+|+||+| ||||| .|++|+ ..+|.+|+.+ .++ .+++++
T Consensus 443 Dgf~~~~~vi~~a~tnr~d~ld~allr--------------pGRfdr~i~i~~p~-~~~r~~i~~~h~~~~~~~~e~~dl 507 (774)
T KOG0731|consen 443 DGFETSKGVIVLAATNRPDILDPALLR--------------PGRFDRQIQIDLPD-VKGRASILKVHLRKKKLDDEDVDL 507 (774)
T ss_pred cCCcCCCcEEEEeccCCccccCHHhcC--------------CCccccceeccCCc-hhhhHHHHHHHhhccCCCcchhhH
Confidence 455556679999999999999999999 99999 556666 8899999998 445 488999
Q ss_pred HHHHHHhhcCCccccccccccccchhhhc
Q psy11689 76 SENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 76 ~~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
.+||..|.||+|+||..+|.|++..+..
T Consensus 508 -~~~a~~t~gf~gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 508 -SKLASLTPGFSGADLANLCNEAALLAAR 535 (774)
T ss_pred -HHHHhcCCCCcHHHHHhhhhHHHHHHHH
Confidence 5599999999999999999999987543
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.92 E-value=9.4e-09 Score=99.67 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=77.1
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
...|.+++....++++.|.+.+++.+...+... ..+..++++||||+|||+++++++++.+.+++.++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 467999999999999999999999998887521 23456777999999999999999999888888887
Q ss_pred cccccCcchhhHHHHHHHHHHHH-HhcCCeEEEEcCCCCCCChh
Q psy11689 211 AAQLYSPYVGEAEQNVTQLFHRA-RLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 211 ~~~~~~~~~g~~~~~i~~~f~~A-~~~~p~il~lDEid~~l~~r 253 (390)
+.+ .. .......+....... ....+.+|+|||++.+....
T Consensus 76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~ 116 (316)
T PHA02544 76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD 116 (316)
T ss_pred cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHH
Confidence 765 21 222112222211111 11357899999999884443
No 94
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.91 E-value=1.9e-09 Score=111.66 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=118.7
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh--------
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-------- 202 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-------- 202 (390)
...|.+.+....|+++.|.+...+.+...+.. ..+.++||+||||||||++|+++...+
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 44677777777788999999888888755321 246789999999999999999997642
Q ss_pred --ccchhcccccccc-C------cchhhHHHHH---HHHHH----------HHHhcCCeEEEEcCCCCCCChhhHHHHHH
Q psy11689 203 --VYRVLAASAAQLY-S------PYVGEAEQNV---TQLFH----------RARLAAPAILFIDEIERTYNCEYREQTAD 260 (390)
Q Consensus 203 --~~~~~~i~~~~~~-~------~~~g~~~~~i---~~~f~----------~A~~~~p~il~lDEid~~l~~r~~~~~~~ 260 (390)
+.+|+.+++.... . ...+.....+ ...|. ........+|||||++.+-. ...+....
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-~~q~~LL~ 197 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-VQMNKLLK 197 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-HHHHHHHH
Confidence 2466777764310 0 0011000000 00000 11123457999999999643 33333333
Q ss_pred HhhcCCCcEE------------------E---eccCH-HHHHhcCchhHH-HhHHHh--hhhcCC--chhHHHhhccccc
Q psy11689 261 NAKKPRIPRT------------------N---GGYRE-QTADTANKPRIQ-RTKREY--REQTAD--TAHKTRISRTNRG 313 (390)
Q Consensus 261 ~~~~~~~~~i------------------~---~~~~~-~~i~~t~~~~~~-r~~~~~--l~~l~~--~~~r~~I~~~n~~ 313 (390)
.+........ . ..... .+.+|++.++-+ ..++.. ...++. ..+...|+.....
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 3322111100 0 00001 123344443321 111111 111221 3334444311111
Q ss_pred ccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689 314 YREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQ 371 (390)
Q Consensus 314 ~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~ 371 (390)
......++.-++.|+..+ ++ ++++.++++.|+..|..+++..|+.+|+....-+
T Consensus 278 k~~i~is~~al~~I~~y~--~n--~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SN--GREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hh--HHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 111112222234444433 25 9999999999999998888889999999988643
No 95
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.91 E-value=5.8e-09 Score=112.12 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~ 284 (390)
.|..+-.+++|...+|.|+++||+.+.+|..++....+.+.....|.+.++|++.++..+++
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~ 680 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDE 680 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 45666789999999999999999999999999999999888888999999999888777665
No 96
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.1e-08 Score=105.84 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=78.1
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--------
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR-------- 205 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~-------- 205 (390)
|..+|....|++|.|.+.+++.|...+... +.+..+||+||+|+|||++++.+|+.+.+.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 444556667779999999999999888642 235568999999999999999999887651
Q ss_pred ----h------hcccc---ccccC--cchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhcC-
Q psy11689 206 ----V------LAASA---AQLYS--PYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKKP- 265 (390)
Q Consensus 206 ----~------~~i~~---~~~~~--~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~~- 265 (390)
+ ..+.. .+++. .....+...++++...+. .....|+||||+|.+-. ...+..+..+...
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-~AaNALLKTLEEPP 152 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-HAFNAMLKTLEEPP 152 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-HHHHHHHHhhccCC
Confidence 0 00100 01110 000112244555555543 33457999999998743 3334444444332
Q ss_pred -CCcEEEeccCH
Q psy11689 266 -RIPRTNGGYRE 276 (390)
Q Consensus 266 -~~~~i~~~~~~ 276 (390)
....+..++..
T Consensus 153 ~~v~FILaTtep 164 (700)
T PRK12323 153 EHVKFILATTDP 164 (700)
T ss_pred CCceEEEEeCCh
Confidence 23344444433
No 97
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.90 E-value=3.3e-09 Score=105.72 Aligned_cols=108 Identities=29% Similarity=0.339 Sum_probs=75.4
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcC----C-CCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-Ccc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLA----I-PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPY 218 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~----~-~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~ 218 (390)
.|.|.+..++.+..++..+.+......... + ....++||+||||||||++|+++|..++.++..+++..+. .+|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 589999999999877744333221100000 1 1246899999999999999999999999999888877654 357
Q ss_pred hhhH-HHHHHHHHHHH----HhcCCeEEEEcCCCCCCCh
Q psy11689 219 VGEA-EQNVTQLFHRA----RLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 219 ~g~~-~~~i~~~f~~A----~~~~p~il~lDEid~~l~~ 252 (390)
+|.. +..+..++..+ ...+++||||||+|.+...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 7764 33444444422 3457889999999988763
No 98
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=1.2e-08 Score=102.86 Aligned_cols=120 Identities=12% Similarity=0.129 Sum_probs=74.0
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh----
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL---- 207 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~---- 207 (390)
..|..++....|+++.|.+.+...|...+... ..+..+||+||+|||||++|+++|+.+++.-.
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~ 73 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE 73 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc
Confidence 34566677777889999999999888877541 23456899999999999999999988765210
Q ss_pred ---------cc---cccccc--CcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 208 ---------AA---SAAQLY--SPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 208 ---------~i---~~~~~~--~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
.+ ...++. ......+...++.+...+. .....|+||||++.+- ....+.....+..
T Consensus 74 pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-~~A~NALLKtLEE 147 (484)
T PRK14956 74 PCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-DQSFNALLKTLEE 147 (484)
T ss_pred ccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-HHHHHHHHHHhhc
Confidence 00 000111 0001111234454444433 3356799999999874 3333444444443
No 99
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.89 E-value=7.3e-09 Score=110.93 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~ 284 (390)
+.|..+-.+++|...+|.|+++||+.+.+|..++....+.+.....|.+.++|++.++..+++
T Consensus 591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~ 653 (686)
T TIGR03797 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADR 653 (686)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCE
Confidence 346667789999999999999999999999999999988888777899999999887777665
No 100
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=3e-08 Score=98.22 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=45.8
Q ss_pred ccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 135 EGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 135 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
..++.+..+++|.|.+.+++.+...+... ..+..+||+||||+|||++|+++|+...+
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34455566669999999999988877531 23456899999999999999999988763
No 101
>KOG0055|consensus
Probab=98.89 E-value=5.5e-09 Score=113.84 Aligned_cols=114 Identities=24% Similarity=0.284 Sum_probs=91.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHH----------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLA---------------------------------------------------- 199 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia---------------------------------------------------- 199 (390)
++.+++|..+.|+||+||||||+...+-
T Consensus 1010 ~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~ 1089 (1228)
T KOG0055|consen 1010 SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE 1089 (1228)
T ss_pred cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC
Confidence 5678899999999999999999999997
Q ss_pred -----------HhhccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 200 -----------AHSVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 200 -----------~~~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
+..+++-+..+.|+..+..+|+ +.|+.|-++++|...+|.||+|||+++.+|..++.-+++++
T Consensus 1090 ~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeAL 1169 (1228)
T KOG0055|consen 1090 EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL 1169 (1228)
T ss_pred CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHH
Confidence 1122233334445555555553 45778889999999999999999999999999998888888
Q ss_pred hcC--CCcEEEeccCHHHHHhcCch
Q psy11689 263 KKP--RIPRTNGGYREQTADTANKP 285 (390)
Q Consensus 263 ~~~--~~~~i~~~~~~~~i~~t~~~ 285 (390)
.+. +.|++.++||+.+|..++.-
T Consensus 1170 d~a~~gRT~IvIAHRLSTIqnaD~I 1194 (1228)
T KOG0055|consen 1170 DRAMEGRTTIVIAHRLSTIQNADVI 1194 (1228)
T ss_pred HHhhcCCcEEEEecchhhhhcCCEE
Confidence 664 68899999999999888763
No 102
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.89 E-value=7.2e-09 Score=94.56 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
.+..+-++++|....|.+|++||+.+.+|......+.+.+.. .+++.+.++|....+..
T Consensus 145 GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~ 207 (252)
T COG1124 145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEH 207 (252)
T ss_pred hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHH
Confidence 355566888999999999999999999999888777665533 47899999999877665
No 103
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.88 E-value=9.7e-09 Score=106.24 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=100.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
..++|||++|+|||+|++++++++ +..++++++.++...+...........|..- ..++++|+|||++.+.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999876 3566788887776555443332222344433 3457999999999998866
Q ss_pred hHHHHHH----HhhcCCCcEEEeccCH-HHHHhcCchhHHHhHH-Hh--hhhcCCchhHHHhhcccccccCCCCCCCCcc
Q psy11689 254 YREQTAD----NAKKPRIPRTNGGYRE-QTADTANKPRIQRTKR-EY--REQTADTAHKTRISRTNRGYREKTADTANKP 325 (390)
Q Consensus 254 ~~~~~~~----~~~~~~~~~i~~~~~~-~~i~~t~~~~~~r~~~-~~--l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~ 325 (390)
..+.... .+...+...+..++.. ..+. .-.+++...+. .+ -...++...|..|+......+....++--+.
T Consensus 394 ~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~-~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~ 472 (617)
T PRK14086 394 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLV-TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLE 472 (617)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEecCCChHhhh-hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5433322 2233334444444432 2221 11223321111 11 1113456667666543333333333333344
Q ss_pred hhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhh
Q psy11689 326 RIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANK 367 (390)
Q Consensus 326 ~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~ 367 (390)
-|+++..+ + ...|+.++.+-...+...+ +.+|.+..+.
T Consensus 473 yLa~r~~r-n--vR~LegaL~rL~a~a~~~~-~~itl~la~~ 510 (617)
T PRK14086 473 FIASRISR-N--IRELEGALIRVTAFASLNR-QPVDLGLTEI 510 (617)
T ss_pred HHHHhccC-C--HHHHHHHHHHHHHHHHhhC-CCCCHHHHHH
Confidence 55554332 2 6778887777655554433 3455554444
No 104
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.88 E-value=6.7e-09 Score=113.35 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=77.0
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLA 208 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~ 208 (390)
....++.+.|-+.....+.+.+.. ....+++|+||||||||++++++|... +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 344556788877766665555432 355778999999999999999999775 455666
Q ss_pred ccccccc--CcchhhHHHHHHHHHHHHHhc-CCeEEEEcCCCCCCChh
Q psy11689 209 ASAAQLY--SPYVGEAEQNVTQLFHRARLA-APAILFIDEIERTYNCE 253 (390)
Q Consensus 209 i~~~~~~--~~~~g~~~~~i~~~f~~A~~~-~p~il~lDEid~~l~~r 253 (390)
++...+. ..|.|+.++.++.+|..+... .|.||||||++.+++.+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g 282 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAG 282 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCC
Confidence 6655554 457788888999999988664 58999999999998643
No 105
>KOG0055|consensus
Probab=98.87 E-value=6.5e-09 Score=113.25 Aligned_cols=113 Identities=26% Similarity=0.335 Sum_probs=87.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-------------------------------------------------- 201 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-------------------------------------------------- 201 (390)
++.+++|..+.|+||+||||||+...+++-
T Consensus 373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~ 452 (1228)
T KOG0055|consen 373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP 452 (1228)
T ss_pred EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC
Confidence 567899999999999999999999999911
Q ss_pred -------------hccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 202 -------------SVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 202 -------------~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
.+.+-+....++....++|+ +.|+.+-+.++|....|.||++||+++.+|+.++..+++.+
T Consensus 453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL 532 (1228)
T KOG0055|consen 453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL 532 (1228)
T ss_pred cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence 11222222233333333332 45777789999999999999999999999999998888887
Q ss_pred hcC--CCcEEEeccCHHHHHhcCc
Q psy11689 263 KKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 263 ~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.+. +.|++.++||+.+|..++.
T Consensus 533 d~~~~grTTivVaHRLStIrnaD~ 556 (1228)
T KOG0055|consen 533 DKASKGRTTIVVAHRLSTIRNADK 556 (1228)
T ss_pred HHhhcCCeEEEEeeehhhhhccCE
Confidence 654 6799999999999988765
No 106
>KOG0737|consensus
Probab=98.87 E-value=4.9e-10 Score=107.40 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=68.7
Q ss_pred eeeeccccCCCcchhhHHHHhhcccccCCcccCCCccceeeCCCCCccCcccccc----ccCCcccchHHHHHHhhcCCc
Q psy11689 12 VLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPF----TKLNEEVELSENVQREEEGIA 87 (390)
Q Consensus 12 ~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~~i~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~ 87 (390)
|||.||||||-.+|+|++| |.++--+|+||+ ...|+.||+. .++++++|+ .++|++|+|||
T Consensus 232 VlVlgATNRP~DlDeAiiR-------------R~p~rf~V~lP~-~~qR~kILkviLk~e~~e~~vD~-~~iA~~t~GyS 296 (386)
T KOG0737|consen 232 VLVLGATNRPFDLDEAIIR-------------RLPRRFHVGLPD-AEQRRKILKVILKKEKLEDDVDL-DEIAQMTEGYS 296 (386)
T ss_pred EEEEeCCCCCccHHHHHHH-------------hCcceeeeCCCc-hhhHHHHHHHHhcccccCcccCH-HHHHHhcCCCc
Confidence 9999999999999999999 566666899999 9999999987 568899999 88999999999
Q ss_pred cccccccccccchh
Q psy11689 88 GENLQRGGGEEGIE 101 (390)
Q Consensus 88 g~~l~~~~~ea~~~ 101 (390)
|.||.-+|..|+..
T Consensus 297 GSDLkelC~~Aa~~ 310 (386)
T KOG0737|consen 297 GSDLKELCRLAALR 310 (386)
T ss_pred HHHHHHHHHHHhHh
Confidence 99999999999876
No 107
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.87 E-value=1.7e-08 Score=107.43 Aligned_cols=99 Identities=26% Similarity=0.422 Sum_probs=66.3
Q ss_pred ccccccCCCCCCCccChHHHHH---HHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRA---LMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.|.+.+....++++.|.+.... .+...+.. ....+++|+||||||||++|+++|+..+.+++.+
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l 83 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence 4555556666778999888764 34444432 2345799999999999999999999988887776
Q ss_pred ccccccCcchhhHHHHHHHHHHHH-----HhcCCeEEEEcCCCCCCC
Q psy11689 210 SAAQLYSPYVGEAEQNVTQLFHRA-----RLAAPAILFIDEIERTYN 251 (390)
Q Consensus 210 ~~~~~~~~~~g~~~~~i~~~f~~A-----~~~~p~il~lDEid~~l~ 251 (390)
++... ....++..+..+ ......+|||||++.+-.
T Consensus 84 na~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 84 NAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred hhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 65321 112233333333 123467999999998753
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.5e-08 Score=102.59 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=73.4
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-------
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV------- 206 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~------- 206 (390)
|..++....|++|.|.+.+++.|...+... ..+..+||+||+|+|||++|+++|+.+++.-
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 445566677779999999999998888541 2345689999999999999999998876421
Q ss_pred ------hccccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 207 ------LAASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 207 ------~~i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
..+... ++. ..........++.+...+.. .+..|+||||++.+-.. ..+.....+..
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-a~naLLk~LEe 145 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-SFNALLKTLEE 145 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-HHHHHHHHHhc
Confidence 011000 000 00011122345555554432 23469999999987543 23334444444
No 109
>KOG0989|consensus
Probab=98.87 E-value=4.4e-09 Score=98.62 Aligned_cols=104 Identities=23% Similarity=0.341 Sum_probs=72.4
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-----
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV----- 206 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~----- 206 (390)
.+|.++|....++++.|.+.+.+.+...+.. ....++|+|||||||||+.+.++|+++..+-
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 4599999999999999999999999888753 3456799999999999999999999986522
Q ss_pred -hccccccccCcchhhHHHHHHHHHHHHHhc---------CC-eEEEEcCCCCCCC
Q psy11689 207 -LAASAAQLYSPYVGEAEQNVTQLFHRARLA---------AP-AILFIDEIERTYN 251 (390)
Q Consensus 207 -~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~---------~p-~il~lDEid~~l~ 251 (390)
...+.++..+..+.. .++ +-|+..... +| .|++|||.|++-.
T Consensus 91 vl~lnaSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts 143 (346)
T KOG0989|consen 91 VLELNASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS 143 (346)
T ss_pred hhhhcccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH
Confidence 223333333322211 111 233332222 23 6999999999754
No 110
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.86 E-value=7.8e-09 Score=100.49 Aligned_cols=110 Identities=23% Similarity=0.294 Sum_probs=76.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh------------------------hc-------------------cchh-
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH------------------------SV-------------------YRVL- 207 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~------------------------~~-------------------~~~~- 207 (390)
++.+.+++.+.|.||+||||||+.++||.- .| +.+.
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 566788999999999999999999999911 00 0000
Q ss_pred ------------------ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----h
Q psy11689 208 ------------------AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----K 263 (390)
Q Consensus 208 ------------------~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~ 263 (390)
.+...++...+..+ +.|+.+.++++|...+|.++++||+.+.+|..-.......+ .
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 01111111222222 34667789999999999999999999999987666554433 4
Q ss_pred cCCCcEEEeccCHHHHHh
Q psy11689 264 KPRIPRTNGGYREQTADT 281 (390)
Q Consensus 264 ~~~~~~i~~~~~~~~i~~ 281 (390)
..++|.+.++|.-.-..+
T Consensus 185 ~~giT~i~VTHDqeEAl~ 202 (352)
T COG3842 185 ELGITFVYVTHDQEEALA 202 (352)
T ss_pred hcCCeEEEEECCHHHHhh
Confidence 568999999998655444
No 111
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.86 E-value=1.7e-08 Score=86.74 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=77.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccccc---cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCC
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASAA---QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~~---~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEi 246 (390)
++.+.+++.+.|.||+|+|||||+++++...... -+.++.. .....+. ..+..+..+.+|...+|.++++||+
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567899999999999999999999999764311 0111111 0011111 2344556788999999999999999
Q ss_pred CCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 247 ERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 247 d~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
.+-+|........+.+.....+.+..+|....+.
T Consensus 98 ~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~ 131 (144)
T cd03221 98 TNHLDLESIEALEEALKEYPGTVILVSHDRYFLD 131 (144)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 9999999888887777666667788888865553
No 112
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=1.2e-08 Score=107.11 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=73.1
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-------
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV------- 206 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~------- 206 (390)
|..+|...+|++|.|.+.+++.|...+... ..+..+||+||+|+|||++++++|+.+++..
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC 73 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC 73 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence 334555666669999999999998887531 2355689999999999999999998876421
Q ss_pred ------hccccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 207 ------LAASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 207 ------~~i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
..+... +++ ......+...++.++..+.. ....|+||||+|.+-. ...+.....+..
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-~A~NALLKtLEE 145 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-HAFNAMLKTLEE 145 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-HHHHHHHHHHHh
Confidence 011100 110 00011122345666665542 3457999999998743 333444454444
No 113
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.85 E-value=1.1e-08 Score=107.51 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.|+.+-.+++|...+|.|+++||+.+.+|..++....+.+... ..|.+.++|++.++..+++
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~ 552 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQ 552 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCE
Confidence 4566678899999999999999999999999999888877553 6889999999877776665
No 114
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.85 E-value=1.2e-08 Score=95.02 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
+..+..+++|...+|.|+++||+.+.+|-...-+.++.+.. .+.+.+...|.+...+.
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r 204 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR 204 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 44456888999999999999999999999988777776644 35888999998755444
No 115
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.85 E-value=1.7e-08 Score=84.86 Aligned_cols=73 Identities=41% Similarity=0.585 Sum_probs=53.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHH---HHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQN---VTQLFHRARLAAPAILFIDEIERT 249 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~---i~~~f~~A~~~~p~il~lDEid~~ 249 (390)
.+..++++||||+|||++++.++... +.+++.+++.+............ ....+..+....+.++++||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 56789999999999999999999988 77777777766554433222111 123344556678899999999987
No 116
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.85 E-value=9.4e-08 Score=90.66 Aligned_cols=188 Identities=15% Similarity=0.188 Sum_probs=110.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc---------cchhccccccccCc--------------c-h-hhHHHHHHHHHH
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV---------YRVLAASAAQLYSP--------------Y-V-GEAEQNVTQLFH 231 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~---------~~~~~i~~~~~~~~--------------~-~-g~~~~~i~~~f~ 231 (390)
...++||+|++|.|||++++.++.... +|++.+..+..-+. + . ....+.-.++..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 456799999999999999999985422 35555444321110 1 0 111122334555
Q ss_pred HHHhcCCeEEEEcCCCCCCChhhHH--HHHHHh----hcCCCcEEEeccCHHHHHhcCchhHHHhHHHhhhhcCC---ch
Q psy11689 232 RARLAAPAILFIDEIERTYNCEYRE--QTADNA----KKPRIPRTNGGYREQTADTANKPRIQRTKREYREQTAD---TA 302 (390)
Q Consensus 232 ~A~~~~p~il~lDEid~~l~~r~~~--~~~~~~----~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~~---~~ 302 (390)
..+..++.+|+|||+..++...... .....+ ..+.++.+..+-....-+-..++++.. ++....+|. ..
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ 217 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDE 217 (302)
T ss_pred HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCc
Confidence 6677899999999999987543322 222222 224677777776655544445555532 222222331 11
Q ss_pred h-HHHhhcccccccCCCCCCCCcchh----hhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689 303 H-KTRISRTNRGYREKTADTANKPRI----PRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 303 ~-r~~I~~~n~~~r~~~~~~vdl~~l----a~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
+ +..+.+.....-....++.....+ -..|.|.. +++..+++.|+..|++.|...||.+.+.+.-
T Consensus 218 ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i---G~l~~ll~~aA~~AI~sG~E~It~~~l~~~~ 286 (302)
T PF05621_consen 218 EFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI---GELSRLLNAAAIAAIRSGEERITREILDKID 286 (302)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch---HHHHHHHHHHHHHHHhcCCceecHHHHhhCC
Confidence 1 122221111111111222333444 47789986 7899999999999999999999999988754
No 117
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=2.6e-08 Score=101.30 Aligned_cols=208 Identities=12% Similarity=0.092 Sum_probs=110.6
Q ss_pred ccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch--------
Q psy11689 135 EGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV-------- 206 (390)
Q Consensus 135 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~-------- 206 (390)
..+|....|+++.|.+.+++.|...+... ..+..+||+||+|+||||+|+.+|+.+++..
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 34556677779999999999888776531 3456899999999999999999998654211
Q ss_pred -----hccc---ccccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEe
Q psy11689 207 -----LAAS---AAQLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNG 272 (390)
Q Consensus 207 -----~~i~---~~~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~ 272 (390)
..+. .+++. ......+...++.+...+.. ....|+||||++.+-. ..-+.....+...--
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-~A~NaLLK~LEePp~----- 145 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-SAFNALLKTLEEPAP----- 145 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-HHHHHHHHHHhCCCC-----
Confidence 0010 01111 00011123456666666543 3456999999987643 333444445544311
Q ss_pred ccCHHHHHhcCchhHHHhHHHhhhh--cCC--chhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHH
Q psy11689 273 GYREQTADTANKPRIQRTKREYREQ--TAD--TAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKP 348 (390)
Q Consensus 273 ~~~~~~i~~t~~~~~~r~~~~~l~~--l~~--~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A 348 (390)
|-.+++++++...+..++...-.. +.. ..+....+...........++..+..|++.+.| + ..|+.+++..+
T Consensus 146 -~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s--lR~alslLdql 221 (491)
T PRK14964 146 -HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S--MRNALFLLEQA 221 (491)
T ss_pred -CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C--HHHHHHHHHHH
Confidence 111112223333333222211111 111 111111111101111222333445677777765 5 77888888887
Q ss_pred HHHHHHccccccChhhhhhh
Q psy11689 349 RIQRTKREYREQTADTANKP 368 (390)
Q Consensus 349 ~~~a~~r~~~~i~~~~~~~~ 368 (390)
..++. ..||.+++.+.
T Consensus 222 i~y~~----~~It~e~V~~l 237 (491)
T PRK14964 222 AIYSN----NKISEKSVRDL 237 (491)
T ss_pred HHhcC----CCCCHHHHHHH
Confidence 76542 36777777653
No 118
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.5e-08 Score=93.97 Aligned_cols=59 Identities=15% Similarity=0.044 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT 281 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~ 281 (390)
.|..+..+++|...+|.+++|||+...+|..+.....+.+ ...+.+.+.++|.+..+..
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHh
Confidence 3555678899999999999999999999999887765544 4448899999998766554
No 119
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.85 E-value=1.7e-08 Score=109.81 Aligned_cols=101 Identities=23% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchhcc
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVLAA 209 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~~i 209 (390)
...++++.|-+.....+.+.+.. ....+++|+||||||||++++.+|.... ..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 45556888877765555554432 3456799999999999999999998753 334445
Q ss_pred cccccc--CcchhhHHHHHHHHHHHHHh-cCCeEEEEcCCCCCCChh
Q psy11689 210 SAAQLY--SPYVGEAEQNVTQLFHRARL-AAPAILFIDEIERTYNCE 253 (390)
Q Consensus 210 ~~~~~~--~~~~g~~~~~i~~~f~~A~~-~~p~il~lDEid~~l~~r 253 (390)
+...+. ..+.|+.+..++.+|..+.. ..+.||||||++.+.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g 296 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAG 296 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCC
Confidence 555444 35778888999999999875 468999999999998754
No 120
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1e-08 Score=99.24 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=77.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh-------------------------------------------hccchh-
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-------------------------------------------SVYRVL- 207 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-------------------------------------------~~~~~~- 207 (390)
++.+..++.+.|.||+|||||||.+.||.- ..++..
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 566789999999999999999999999911 000000
Q ss_pred -----------------ccccccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----c
Q psy11689 208 -----------------AASAAQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----K 264 (390)
Q Consensus 208 -----------------~i~~~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~ 264 (390)
.+....++..+.. .+.|..+.++.+|...+|++++|||+-+.+|.+........+. .
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~ 182 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh
Confidence 1111222222222 2335566789999999999999999999999887766544443 3
Q ss_pred CCCcEEEeccCHHHHHh
Q psy11689 265 PRIPRTNGGYREQTADT 281 (390)
Q Consensus 265 ~~~~~i~~~~~~~~i~~ 281 (390)
.+.|.+.++|...-..+
T Consensus 183 l~~T~IYVTHDq~EAmt 199 (338)
T COG3839 183 LGTTTIYVTHDQVEAMT 199 (338)
T ss_pred cCCcEEEEcCCHHHHHh
Confidence 57899999998765554
No 121
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.84 E-value=1.8e-08 Score=100.30 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=86.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHH----------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLA---------------------------------------------------- 199 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia---------------------------------------------------- 199 (390)
++.+.++..+-+.||+|+|||||++.+.
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~ 435 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE 435 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc
Confidence 4567778899999999999999999997
Q ss_pred -----------HhhccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 200 -----------AHSVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 200 -----------~~~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
+..+.+-..+..++.+...+|+ ..|..+-.+++|....|.+|++||+.+-+|...+......+
T Consensus 436 ~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai 515 (580)
T COG4618 436 EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAI 515 (580)
T ss_pred cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHH
Confidence 1112222333334444444433 34666778889999999999999999999998887766554
Q ss_pred ---hcCCCcEEEeccCHHHHHhcCch
Q psy11689 263 ---KKPRIPRTNGGYREQTADTANKP 285 (390)
Q Consensus 263 ---~~~~~~~i~~~~~~~~i~~t~~~ 285 (390)
...+.+.+.++||+..++.++.-
T Consensus 516 ~~~k~rG~~vvviaHRPs~L~~~Dki 541 (580)
T COG4618 516 LAAKARGGTVVVIAHRPSALASVDKI 541 (580)
T ss_pred HHHHHcCCEEEEEecCHHHHhhccee
Confidence 55689999999999999988863
No 122
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.84 E-value=2.9e-08 Score=88.15 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=74.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh-------------c---------cccccc-cCcchh--hHHHHH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL-------------A---------ASAAQL-YSPYVG--EAEQNV 226 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~-------------~---------i~~~~~-~~~~~g--~~~~~i 226 (390)
++.+.++..+.|.||+|+|||||+++++...|--.+ + +..... ...... ...+..
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 456789999999999999999999999743331100 0 000000 111111 123455
Q ss_pred HHHHHHHHhcC--CeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAA--PAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~--p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
+-.+.+|...+ |.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 66788899999 999999999999999988776665543 4678888999865443
No 123
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.83 E-value=2.3e-08 Score=87.92 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=76.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc---h-------h-cccc-ccccCc---------ch--hhHHHHHHH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR---V-------L-AASA-AQLYSP---------YV--GEAEQNVTQ 228 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~---~-------~-~i~~-~~~~~~---------~~--g~~~~~i~~ 228 (390)
++.+.++..+.|.||+|+|||||+++++...... + + ++.. +.+... +. -...+..+.
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 4567899999999999999999999999663210 0 0 0000 001000 00 112345567
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
.+++|...+|.++++||+.+.+|........+.+.....+.+..+|+.....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh
Confidence 8889999999999999999999999888877777666677888888865443
No 124
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.82 E-value=6.4e-10 Score=110.97 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=71.3
Q ss_pred hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHH
Q psy11689 8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQR 81 (390)
Q Consensus 8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~ 81 (390)
-.+++.+|++||+++.+|+||+| ||||+ .|++|. +.++|.+|+.. +.+.+++++ +.||+
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allR--------------pgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~-~~la~ 331 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILR--------------PGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL-EELAE 331 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcC--------------CccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH-HHHHH
Confidence 34689999999999999999999 99999 777777 47889999987 557778999 88999
Q ss_pred hhcCCccccccccccccchhhhc
Q psy11689 82 EEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 82 ~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
.|+||+|+||.++|.+|++.+..
T Consensus 332 ~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 332 LTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987543
No 125
>KOG0726|consensus
Probab=98.81 E-value=8.3e-10 Score=102.58 Aligned_cols=88 Identities=24% Similarity=0.338 Sum_probs=73.9
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|+..--+.|=||++|||-++.||||.| |||.| .|+.|. ++..++.|+.| |.++.+|++ +
T Consensus 317 dGFdsrgDvKvimATnrie~LDPaLiR--------------PGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl-e 381 (440)
T KOG0726|consen 317 DGFDSRGDVKVIMATNRIETLDPALIR--------------PGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL-E 381 (440)
T ss_pred cCccccCCeEEEEecccccccCHhhcC--------------CCccccccccCCCchhhhceeEEEeecccchhccccH-H
Confidence 333444678899999999998888888 99999 666655 48899999998 889999999 9
Q ss_pred HHHHhhcCCccccccccccccchh-hhcCC
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIE-LREGG 106 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~-~~~~~ 106 (390)
.+--...-+||+||.+.|.|+++- +++.+
T Consensus 382 ~li~~kddlSGAdIkAictEaGllAlRerR 411 (440)
T KOG0726|consen 382 ELIMTKDDLSGADIKAICTEAGLLALRERR 411 (440)
T ss_pred HHhhcccccccccHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999986 44433
No 126
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.81 E-value=3.3e-08 Score=86.69 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=76.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccccccc--------cCc---ch--hhHHHHHHHHHHHHHhc
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASAAQL--------YSP---YV--GEAEQNVTQLFHRARLA 236 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~~~~--------~~~---~~--g~~~~~i~~~f~~A~~~ 236 (390)
++.+.++..+.|.||+|+|||||+++++...... -+.++...+ ... +. =...+..+-.+++|...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 4667899999999999999999999999653210 011111110 000 11 12234556789999999
Q ss_pred CCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 237 APAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 237 ~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
+|.++++||+.+.+|........+.+.. ...+.+..+|....+.
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 9999999999999999888777665533 3577888888865443
No 127
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.80 E-value=2.7e-08 Score=106.90 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~ 284 (390)
.|+.+-.+++|...+|.|+++||+++.+|..++....+.......|.+.++|++.++..+++
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~ 682 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQ 682 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCE
Confidence 45666789999999999999999999999998888777333456889999999877766654
No 128
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.79 E-value=3.2e-08 Score=87.97 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=74.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccccc--ccCcch-hhHHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASAAQ--LYSPYV-GEAEQNVTQLFHRARLAAPAILFIDEIE 247 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~~~--~~~~~~-g~~~~~i~~~f~~A~~~~p~il~lDEid 247 (390)
+.+.++..+.|.||+|+|||||+++++...... -+.++... ...... -...+..+..+++|....|.++++||+.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 356789999999999999999999999753210 01111110 000100 1223455668889999999999999999
Q ss_pred CCCChhhHHHHHHHhhc---C-CCcEEEeccCHHHHH
Q psy11689 248 RTYNCEYREQTADNAKK---P-RIPRTNGGYREQTAD 280 (390)
Q Consensus 248 ~~l~~r~~~~~~~~~~~---~-~~~~i~~~~~~~~i~ 280 (390)
+.+|........+.+.. . ..+.+..+|....+.
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 99999887766655533 2 367888999876555
No 129
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=5.1e-08 Score=102.02 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=73.0
Q ss_pred cccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh--------
Q psy11689 136 GEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL-------- 207 (390)
Q Consensus 136 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~-------- 207 (390)
.++....|++|.|.+.+++.|...+... +.+..+||+||+|+|||++|+++|+.+++.-.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 3455566669999999999999887641 34567999999999999999999988664311
Q ss_pred -----ccccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 208 -----AASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 208 -----~i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
.+... ++. ......+...++.++..+.. ....|+||||++.+- ....+.....+..
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-~~A~NALLKtLEE 145 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-KSAFNAMLKTLEE 145 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-HHHHHHHHHHHHh
Confidence 11111 110 00111223456666665432 345799999999753 3333444455543
No 130
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.79 E-value=2.7e-08 Score=90.66 Aligned_cols=57 Identities=14% Similarity=0.007 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHHHHhc
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQTADTA 282 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~i~~t 282 (390)
-+..+++|....|.++|+||+++-+|+-......+.+ ...+.|.+.++|.+..+.++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i 212 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI 212 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhh
Confidence 3468899999999999999999999988766554433 33589999999998777664
No 131
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.79 E-value=2.1e-08 Score=104.16 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccC
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYR 275 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~ 275 (390)
.|..+-.+++|...+|.|+++||+++.+|..++....+.+... ..|.+.++||
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4566678999999999999999999999999999988888654 5788888887
No 132
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.79 E-value=2.6e-08 Score=106.90 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.|..+-.+++|...+|.|+++||+.+.+|..++....+.+... ..|.+.++|++.++..+++
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ 668 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR 668 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCE
Confidence 4566778899999999999999999999999999888877554 5889999999887776665
No 133
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.79 E-value=2.8e-08 Score=104.18 Aligned_cols=113 Identities=24% Similarity=0.293 Sum_probs=83.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-------------------------------------------------- 201 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-------------------------------------------------- 201 (390)
++.+++++.+.++||+|+|||||++.+++.
T Consensus 349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~ 428 (567)
T COG1132 349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP 428 (567)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC
Confidence 556889999999999999999999999911
Q ss_pred -------------hccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 202 -------------SVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 202 -------------~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
.+++-+....++.+...+|+ +.|..+-.+++|....|.|+++||+.+.+|..++....+.+
T Consensus 429 ~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l 508 (567)
T COG1132 429 DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL 508 (567)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH
Confidence 11111111112222223332 34667778999999999999999999999999999888877
Q ss_pred h--cCCCcEEEeccCHHHHHhcCc
Q psy11689 263 K--KPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 263 ~--~~~~~~i~~~~~~~~i~~t~~ 284 (390)
. ....|.+.++||+.++..+++
T Consensus 509 ~~l~~~rT~iiIaHRlsti~~aD~ 532 (567)
T COG1132 509 KKLLKGRTTLIIAHRLSTIKNADR 532 (567)
T ss_pred HHHhcCCEEEEEeccHhHHHhCCE
Confidence 4 234588889999988887775
No 134
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=5.1e-08 Score=96.68 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=70.1
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc--
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA-- 211 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~-- 211 (390)
|.+++.+..++++.|.+...+.+...+... ..+..+|||||||+|||++++++|+....+.....+
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 455666677779999999999888887541 245689999999999999999999887542211110
Q ss_pred -----ccccCcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCC
Q psy11689 212 -----AQLYSPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYN 251 (390)
Q Consensus 212 -----~~~~~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~ 251 (390)
-++ ..........++.++..+.. ..+.||++||++.+..
T Consensus 75 ~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 75 FSFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS 122 (367)
T ss_pred CCcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH
Confidence 001 11111223456666665543 2457999999997754
No 135
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.78 E-value=3.1e-08 Score=103.94 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+.+.+|..++....+.+... ..+.+.++|++..+..+++
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~ 542 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDR 542 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCE
Confidence 4666778999999999999999999999999998888777543 5788999999877665554
No 136
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.78 E-value=1.2e-08 Score=96.52 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=32.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcccccc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQ 213 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~ 213 (390)
.+..++|+||||||||++|+++|...+.+++.+++..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~ 56 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA 56 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 4678999999999999999999999999988876643
No 137
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.77 E-value=2.9e-08 Score=85.67 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=34.1
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYRE 276 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~ 276 (390)
++.+-...-|.|+++||+.+.+|..+...+...+. ......++++|..
T Consensus 143 AliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194 (223)
T ss_pred HHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh
Confidence 44455677899999999999999876665544433 3356667777764
No 138
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.77 E-value=3.5e-08 Score=102.50 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+.+.+|..++....+.+.. ...+.+.++|++..+..+++
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ 525 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADR 525 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCE
Confidence 355667888999999999999999999999999988877765 35889999999877766554
No 139
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=5.8e-08 Score=101.44 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=47.2
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
|..++....|+++.|.+.+++.|...+... ..+..+||+||+|+|||++++++|+.+++
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444556667779999999999998887642 23456899999999999999999988764
No 140
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=4.2e-08 Score=102.72 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=69.9
Q ss_pred ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---------
Q psy11689 137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL--------- 207 (390)
Q Consensus 137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~--------- 207 (390)
++....|++|.|.+.+++.|...+... .-+..+||+||+|+|||++++++|+.+++...
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 344556669999999999988877541 23455899999999999999999988765311
Q ss_pred ----cccc---cccc--CcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 208 ----AASA---AQLY--SPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 208 ----~i~~---~~~~--~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
.+.. .++. ..........++.+...+. .....|+||||++.+- ....+.....+..
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-~~a~NALLKtLEE 145 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKTLEE 145 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-HHHHHHHHHHHHc
Confidence 0000 0110 0000011233454444432 3345799999999764 3334444444444
No 141
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.77 E-value=3.5e-08 Score=103.71 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
+.+..+-.+++|...+|.|+++||+++.+|+.++....+.+... ..+.+.++|++..+..+++
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~ 547 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 34556678889999999999999999999999998888777553 5788999999877666665
No 142
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.77 E-value=1.7e-07 Score=90.66 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=49.7
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
...|.+++.+..++++.|.+++++.+...+... ...+++|+||||+|||+++++++++..
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 456888888888899999999999988877431 223589999999999999999998863
No 143
>PRK06893 DNA replication initiation factor; Validated
Probab=98.77 E-value=6.6e-08 Score=89.63 Aligned_cols=174 Identities=9% Similarity=0.071 Sum_probs=85.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR 255 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~ 255 (390)
..++|+||||||||+|+.++|++.. ....++..... ......++.. ..++++|+|||++.+.+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~--~~~~dlLilDDi~~~~~~~~~ 109 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLEN--LEQQDLVCLDDLQAVIGNEEW 109 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhh--cccCCEEEEeChhhhcCChHH
Confidence 4589999999999999999998753 23333333211 0111122322 235689999999998765433
Q ss_pred HHHH----HHhhcCCCcEEE-eccC-HHHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCCcch
Q psy11689 256 EQTA----DNAKKPRIPRTN-GGYR-EQTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTANKPR 326 (390)
Q Consensus 256 ~~~~----~~~~~~~~~~i~-~~~~-~~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~ 326 (390)
.... ......+...+. .++. +..+.. ..+++...+. ...-..++...+..|+......+....++--+..
T Consensus 110 ~~~l~~l~n~~~~~~~~illits~~~p~~l~~-~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~ 188 (229)
T PRK06893 110 ELAIFDLFNRIKEQGKTLLLISADCSPHALSI-KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANF 188 (229)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCChHHccc-cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3221 122222223222 2222 222221 1234432222 1111233455565554332333333333334456
Q ss_pred hhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhh
Q psy11689 327 IPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANK 367 (390)
Q Consensus 327 la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~ 367 (390)
|+++.+| + .+.+..++..-...+. ...+.+|...+++
T Consensus 189 L~~~~~~-d--~r~l~~~l~~l~~~~~-~~~~~it~~~v~~ 225 (229)
T PRK06893 189 LLKRLDR-D--MHTLFDALDLLDKASL-QAQRKLTIPFVKE 225 (229)
T ss_pred HHHhccC-C--HHHHHHHHHHHHHHHH-hcCCCCCHHHHHH
Confidence 7776553 3 5667777776533333 3234677665554
No 144
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.77 E-value=3.3e-08 Score=106.29 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC-CCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP-RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~-~~~~i~~~~~~~~i~~t~~ 284 (390)
+.|..+-.+++|...+|.|+++||+++.+|..++....+.+... ..|.+.++|++.++..+++
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~ 677 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDK 677 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCE
Confidence 34666778999999999999999999999999998888777653 4788999999887776665
No 145
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.77 E-value=7e-08 Score=84.97 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHhcCchh
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADTANKPR 286 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~t~~~~ 286 (390)
++.+...++|...+|.+++-||++.-+|+..+.+++..+ ...+.|.+..+|....+.+..++-
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 334568889999999999999999999999988876644 556889999999988888876643
No 146
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.76 E-value=9.5e-08 Score=94.03 Aligned_cols=106 Identities=14% Similarity=0.199 Sum_probs=67.6
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh------
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL------ 207 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~------ 207 (390)
|.+++....++++.|.+..++.+.+.+... ..+..+||+||||+|||++++++|..+..+-.
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 445555666669999999999998877531 23567899999999999999999988643210
Q ss_pred -------cc---cccccc--CcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCC
Q psy11689 208 -------AA---SAAQLY--SPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYN 251 (390)
Q Consensus 208 -------~i---~~~~~~--~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~ 251 (390)
.+ ...++. ..........++.++..+... ...|++|||++.+-.
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK 131 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH
Confidence 00 000110 000011223466676665432 346999999998743
No 147
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.76 E-value=3.6e-08 Score=103.86 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+.+.+|..++....+.+... ..+.+.++|++..+..+++
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ 543 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADT 543 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4566678899999999999999999999999998887777543 5789999999877776665
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=4.3e-08 Score=99.28 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=50.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY 254 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~ 254 (390)
...++||||+|+|||+|+++++++. +..+++++..++...+.......-...|... ...+++|+|||++.+.+...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCChh
Confidence 3579999999999999999999875 4666667665544332222111111234333 24678999999999876543
No 149
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=8.3e-08 Score=102.55 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=46.6
Q ss_pred ccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689 135 EGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205 (390)
Q Consensus 135 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~ 205 (390)
..++....|++|.|.+.+++.|+.++... +-+..+||+||||||||++++++|+.+++.
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34455666679999999999988877541 234557999999999999999999988753
No 150
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.74 E-value=4.1e-08 Score=90.14 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=75.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh--------------------------c----------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS--------------------------V---------------------- 203 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~--------------------------~---------------------- 203 (390)
++.+..+..+.|.||+||||||+.+.|-+-. |
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP 100 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP 100 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhh
Confidence 5678899999999999999999999997110 0
Q ss_pred -----------------cchhccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh--
Q psy11689 204 -----------------YRVLAASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA-- 262 (390)
Q Consensus 204 -----------------~~~~~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~-- 262 (390)
...+.++..++..+|..+ +.+..+.-..+|....|.|+++||+.+.+|+-+....++.+
T Consensus 101 ~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence 111222333344444332 22444455668999999999999999999988776665544
Q ss_pred --hcCCCcEEEeccCHHH
Q psy11689 263 --KKPRIPRTNGGYREQT 278 (390)
Q Consensus 263 --~~~~~~~i~~~~~~~~ 278 (390)
...+.|.+.++|.+.-
T Consensus 181 lq~~l~kTivfVTHDidE 198 (309)
T COG1125 181 LQKELGKTIVFVTHDIDE 198 (309)
T ss_pred HHHHhCCEEEEEecCHHH
Confidence 3457889999998643
No 151
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=4.9e-08 Score=100.23 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=42.8
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
....+++|.|.+.+++.|...+... ..+..+||+|||||||||+++++|+.+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3344449999999999998887641 23455799999999999999999988753
No 152
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.74 E-value=7e-08 Score=85.40 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=76.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccc---------------------ccccCcch----hhHHH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASA---------------------AQLYSPYV----GEAEQ 224 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~---------------------~~~~~~~~----g~~~~ 224 (390)
++.+.++..+.|.||+|+|||||+++++...... -+.++. +.++...+ -...+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 4567789999999999999999999999653200 000110 00110000 12234
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHhcC
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~t~ 283 (390)
..+..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..++
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d 163 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASAD 163 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 5667889999999999999999999999888766655533 3567888888875554333
No 153
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.73 E-value=8.4e-08 Score=91.72 Aligned_cols=71 Identities=30% Similarity=0.388 Sum_probs=51.9
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEA 222 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~ 222 (390)
.+.|..+..+..--++.+ . +-+.-.++++|+.||||||||+||-++|.++| .||+.++++++++.-...+
T Consensus 40 G~VGQ~~AReAaGvIv~m-------i-k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKT 111 (450)
T COG1224 40 GLVGQEEAREAAGVIVKM-------I-KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKT 111 (450)
T ss_pred cccchHHHHHhhhHHHHH-------H-HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHH
Confidence 567776666554444433 1 12335689999999999999999999999987 7888888888876655444
Q ss_pred H
Q psy11689 223 E 223 (390)
Q Consensus 223 ~ 223 (390)
+
T Consensus 112 E 112 (450)
T COG1224 112 E 112 (450)
T ss_pred H
Confidence 4
No 154
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.1e-07 Score=98.83 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=48.7
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
.|..++....|++|.|.+.+++.|...+... +-...+||+||+|+|||++|+++|+.+.+
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4556667777779999999999998887541 22457999999999999999999988764
No 155
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=1e-07 Score=84.25 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=75.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccc---------------------ccccCcch----hhHHH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASA---------------------AQLYSPYV----GEAEQ 224 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~---------------------~~~~~~~~----g~~~~ 224 (390)
++.+.++..+.|.||+|+|||||+++++...... -+.++. +.++...+ -...+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 4567899999999999999999999999653210 000110 00111000 11234
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcC
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTAN 283 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~ 283 (390)
..+..+.+|...+|.++++||+.+.+|........+.+... ..+.+..+|....+..++
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d 162 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDAD 162 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCC
Confidence 45567889999999999999999999998877666555332 467788888876554433
No 156
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.71 E-value=7.2e-08 Score=90.90 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=84.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHH-----------------------------hhc-------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAA-----------------------------HSV------------------- 203 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~-----------------------------~~~------------------- 203 (390)
++.++++.-+-+.|.+|+|||||.+++-. ..|
T Consensus 26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA 105 (339)
T COG1135 26 SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA 105 (339)
T ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhh
Confidence 56788999999999999999999999970 000
Q ss_pred cch-----------------h-ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689 204 YRV-----------------L-AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263 (390)
Q Consensus 204 ~~~-----------------~-~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~ 263 (390)
+|+ . .+..++....|..+ +.|+.+...++|...+|.|++.||+++.+|+.+...+.+.+.
T Consensus 106 ~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~ 185 (339)
T COG1135 106 FPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLK 185 (339)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHH
Confidence 000 0 01111222223322 346667788999999999999999999999999988877663
Q ss_pred ----cCCCcEEEeccCHHHHHh-cCchhH
Q psy11689 264 ----KPRIPRTNGGYREQTADT-ANKPRI 287 (390)
Q Consensus 264 ----~~~~~~i~~~~~~~~i~~-t~~~~~ 287 (390)
..++|.+.++|.+.++.. |++--+
T Consensus 186 ~In~~lglTIvlITHEm~Vvk~ic~rVav 214 (339)
T COG1135 186 DINRELGLTIVLITHEMEVVKRICDRVAV 214 (339)
T ss_pred HHHHHcCCEEEEEechHHHHHHHhhhheE
Confidence 358999999999988765 666433
No 157
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.71 E-value=2.4e-09 Score=109.22 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=66.2
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--cc----CCcccchHHHHH
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--TK----LNEEVELSENVQ 80 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~~----~~~~v~l~~~la 80 (390)
.++|+|+++||+++.+|+|++| ||||+ .|.+|. +.++|.+|+++ .+ ...++++ +.||
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR--------------~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl-~~La 422 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILR--------------KGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI-KKLS 422 (489)
T ss_pred CCceEEEEecCChhhCCHHHhC--------------CCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH-HHHH
Confidence 4679999999999999999999 99999 555554 37899999987 22 1247888 8999
Q ss_pred HhhcCCccccccccccccchhhh
Q psy11689 81 REEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 81 ~~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
+.|+||+|+||..+|.++...+.
T Consensus 423 ~~T~GfSGAdI~~lv~eA~~~A~ 445 (489)
T CHL00195 423 KLSNKFSGAEIEQSIIEAMYIAF 445 (489)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998877543
No 158
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.1e-08 Score=97.90 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
..|..+.+.++|..++++++++||+++.+|.+++..+.+.+... ..+.+.++||+..+..+++
T Consensus 459 gGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~ 523 (559)
T COG4988 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR 523 (559)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCE
Confidence 34677789999999999999999999999999999888877553 6888999999887777765
No 159
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.71 E-value=3.2e-08 Score=97.89 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=71.6
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC-cchh-h
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERL-AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-PYVG-E 221 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-~~~g-~ 221 (390)
.|.|.++.++.+..++...++.......+ .-.+|.++||+||||||||++++++|..++.+++.++...++. +|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 58899999999988876543332221111 1124689999999999999999999999999999999988874 7888 5
Q ss_pred HHHHHHHHHHHHHh
Q psy11689 222 AEQNVTQLFHRARL 235 (390)
Q Consensus 222 ~~~~i~~~f~~A~~ 235 (390)
.++.++.+|..|..
T Consensus 93 vE~i~r~l~e~A~~ 106 (441)
T TIGR00390 93 VESMVRDLTDAAVK 106 (441)
T ss_pred HHHHHHHHHHHHHH
Confidence 77889999998865
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.71 E-value=2.1e-09 Score=108.11 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=71.4
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
..++.+|++||+++.+|+||+| ||||+ .|++|. +.++|++|+.+ +.+.+++++ +.++..
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlR--------------pGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl-~~la~~ 384 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIR--------------PGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL-EEFIMA 384 (438)
T ss_pred cCCeEEEEecCChHHhhHHhcc--------------CCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH-HHHHHh
Confidence 3578999999999999999998 99999 778777 47899999987 567889999 899999
Q ss_pred hcCCccccccccccccchhhhc
Q psy11689 83 EEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
|+||+|+||..+|.+|++.+..
T Consensus 385 t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 385 KDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
No 161
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.71 E-value=9.6e-08 Score=82.79 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCch
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANKP 285 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~~ 285 (390)
+..+.++++|....|.|+|-||++.-+|..+...+.+.+.. .+.+.+.++|.+...+.|+|.
T Consensus 151 EQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred HHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhe
Confidence 34467889999999999999999999999888777665533 378889999999888877763
No 162
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.70 E-value=1.2e-07 Score=84.31 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=74.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccc--------------------cccccCcch-------hhH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAAS--------------------AAQLYSPYV-------GEA 222 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~--------------------~~~~~~~~~-------g~~ 222 (390)
++.+.+++.+.|.||+|+|||||+++++...... -+.++ .+.++...+ -..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 5667899999999999999999999999553200 00000 001111000 012
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHh
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADT 281 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~ 281 (390)
.+..+-.+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+..
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 345567889999999999999999999999888776665543 25667788887655443
No 163
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=1e-07 Score=102.73 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=47.1
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
|..+|....|++|.|.+.+++.|...+... +.+..+||+||+|||||++++++|+.+.+
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 445566667779999999999988887531 23445899999999999999999988764
No 164
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=2.5e-07 Score=85.04 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHH
Q psy11689 148 GLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQ 224 (390)
Q Consensus 148 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~ 224 (390)
+.....+.++..+. ...+..++|+||+|||||+|+++++.++. .+++++++.++....
T Consensus 21 ~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------ 81 (226)
T TIGR03420 21 GNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------ 81 (226)
T ss_pred CcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------
Confidence 44556666665542 13577899999999999999999998764 556667766543211
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
..++.. ...+.+|+|||++.+-..
T Consensus 82 --~~~~~~--~~~~~lLvIDdi~~l~~~ 105 (226)
T TIGR03420 82 --PEVLEG--LEQADLVCLDDVEAIAGQ 105 (226)
T ss_pred --HHHHhh--cccCCEEEEeChhhhcCC
Confidence 122222 234569999999987654
No 165
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.70 E-value=2.9e-09 Score=112.64 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=70.1
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
...|+++++||+++.+|+|++| ||||+ .|.+|. +.++|.+|+.. .++.+++++ ..+|+.
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~R--------------pgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~-~~la~~ 352 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLR--------------PGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA-AIIARG 352 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhC--------------CcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH-HHHHhh
Confidence 3468999999999999999999 99999 666666 36789999886 457788999 889999
Q ss_pred hcCCccccccccccccchhhhc
Q psy11689 83 EEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
|.||+|+||..+|.+++..+..
T Consensus 353 t~G~sgadl~~l~~eAa~~a~r 374 (644)
T PRK10733 353 TPGFSGADLANLVNEAALFAAR 374 (644)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987554
No 166
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.70 E-value=2.5e-08 Score=98.64 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=73.8
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCC-CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC-cchh-h
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAI-PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-PYVG-E 221 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-~~~g-~ 221 (390)
.|.|.+.+++.+..++...++.......... ..+.++||+||||||||+||+++|..++.+|+.+++..++. +|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 5899999999998887543222211111110 12588999999999999999999999999999999998885 7988 5
Q ss_pred HHHHHHHHHHHHHhcCCe
Q psy11689 222 AEQNVTQLFHRARLAAPA 239 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~ 239 (390)
.+..++.+|..|....|+
T Consensus 96 ~e~~ir~L~~~A~~~~~~ 113 (443)
T PRK05201 96 VESIIRDLVEIAVKMVRE 113 (443)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 678899999999777665
No 167
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=2.5e-07 Score=95.79 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=71.2
Q ss_pred ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---------
Q psy11689 137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL--------- 207 (390)
Q Consensus 137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~--------- 207 (390)
++....|+++.|.+.+++.+...+... ..+..+||+||+|+|||++|+++|+.+++...
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 344455569999999999988887541 23456899999999999999999988765210
Q ss_pred ----ccccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 208 ----AASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 208 ----~i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
.+... ++. ..........++.+...+.. ....|+||||+|.+-. ...+.....+..
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-~a~naLLK~LEe 145 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-SAFNAMLKTLEE 145 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-HHHHHHHHHHhC
Confidence 00000 000 00001123446666666543 2346999999997643 333444455544
No 168
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.70 E-value=7e-08 Score=101.60 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+++.+|..++....+.+... ..+.+.++|++..+..+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ 538 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADR 538 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCE
Confidence 4566678899999999999999999999999998887777553 5788999999876665554
No 169
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.69 E-value=1.1e-07 Score=96.44 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=101.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHH---HHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQ---NVTQLFHRARLAAPAILFIDEIERT 249 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~---~i~~~f~~A~~~~p~il~lDEid~~ 249 (390)
...++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |.. ....+++|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~-~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKN-EICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHH-HhccCCEEEEeccccc
Confidence 3569999999999999999999854 3566677776665554433221 1211 211 2346789999999988
Q ss_pred CChhhHHHHHHH----hhcCCCcEEEeccCHHHHHhcCchhHHHhHH-Hhh--hhcCCchhHHHhhcccccccCC--CCC
Q psy11689 250 YNCEYREQTADN----AKKPRIPRTNGGYREQTADTANKPRIQRTKR-EYR--EQTADTAHKTRISRTNRGYREK--TAD 320 (390)
Q Consensus 250 l~~r~~~~~~~~----~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~-~~l--~~l~~~~~r~~I~~~n~~~r~~--~~~ 320 (390)
.+.....+.... ....+...+..+++.-.....-.+++...+. .+. -..++...+..|+......+.. ..+
T Consensus 219 ~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~ 298 (450)
T PRK14087 219 SYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVT 298 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCC
Confidence 765443333222 2223334454444432111111223321111 011 1233456666664222211111 122
Q ss_pred CCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc-cccChhhhhhhH
Q psy11689 321 TANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY-REQTADTANKPR 369 (390)
Q Consensus 321 ~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~-~~i~~~~~~~~~ 369 (390)
+--+..||....| + ...|..++.+....+..... ..+|.+.+.++.
T Consensus 299 ~evl~~Ia~~~~g-d--~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l 345 (450)
T PRK14087 299 EEAINFISNYYSD-D--VRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF 345 (450)
T ss_pred HHHHHHHHHccCC-C--HHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHH
Confidence 2234456666665 3 78899999988866655532 568877776655
No 170
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3e-08 Score=102.25 Aligned_cols=224 Identities=17% Similarity=0.168 Sum_probs=131.7
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc---------
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY--------- 215 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~--------- 215 (390)
|=-|++.+|+.+.+.+... +...--.+.-++|+||||+|||+|++.||..++-.|+.++.....
T Consensus 324 dHYGLekVKeRIlEyLAV~-------~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQ-------KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHH-------HHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 3478999999998887542 111223567899999999999999999999999999988765433
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc-------CCCcE-----EEeccCHHHHHhcC
Q psy11689 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK-------PRIPR-----TNGGYREQTADTAN 283 (390)
Q Consensus 216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~-------~~~~~-----i~~~~~~~~i~~t~ 283 (390)
..|+|+....+-+.+..|...+| +++|||+|.+... +..+...++.. ..... ...-..+..++|+|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC
Confidence 45788887788888889988886 5789999998743 22222222211 11111 11112344577777
Q ss_pred chh-HHHhHHHhhhh--cCC--chhHHHhhcccccccCC-----CCCCCCcch-----hh---hcCCCCCCCcHHHHHHH
Q psy11689 284 KPR-IQRTKREYREQ--TAD--TAHKTRISRTNRGYREK-----TADTANKPR-----IP---RTNRGYREYSAQNANTA 345 (390)
Q Consensus 284 ~~~-~~r~~~~~l~~--l~~--~~~r~~I~~~n~~~r~~-----~~~~vdl~~-----la---~~t~gfs~~gaDL~~l~ 345 (390)
.-+ +-++++..... +.+ ..++..|..-....+.. ...++.+.+ |. .+..|.-..-..|..+|
T Consensus 475 sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~ 554 (782)
T COG0466 475 SLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKIC 554 (782)
T ss_pred ccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHH
Confidence 765 55555543332 333 34445553222111111 112233322 22 23345543345677888
Q ss_pred HHHHHHHHHcccc---ccChhhhhhhHHHHhcCcc
Q psy11689 346 NKPRIQRTKREYR---EQTADTANKPRIQRIGNLS 377 (390)
Q Consensus 346 ~~A~~~a~~r~~~---~i~~~~~~~~~~~~~~~~~ 377 (390)
++++..-...... .++.+++.+-.=...|...
T Consensus 555 RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~ 589 (782)
T COG0466 555 RKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYG 589 (782)
T ss_pred HHHHHHHHhcCcccceeeCHHHHHHHhCCcccCcc
Confidence 8887775554333 4666677665544444443
No 171
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.69 E-value=7.2e-08 Score=101.06 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
+.+..+-.+++|...+|.|+++||+++.+|..+.....+.+... ..+.+.++|+...+..+++
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ 536 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADR 536 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCE
Confidence 34566678899999999999999999999999998887777553 5788999999876666654
No 172
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=1.9e-07 Score=96.73 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=49.2
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..|..++.+..|+++.|.+.+++.+...+... ..+..+||+||+|+|||++|+++|..+.
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35777777888889999999999888876431 2356799999999999999999998764
No 173
>KOG0056|consensus
Probab=98.69 E-value=3.2e-08 Score=97.92 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=80.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-------------------------------------------------- 201 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-------------------------------------------------- 201 (390)
++.+.+|..+.|+||+|.||||+.+.+-+-
T Consensus 558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~ 637 (790)
T KOG0056|consen 558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP 637 (790)
T ss_pred eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC
Confidence 556789999999999999999999998711
Q ss_pred -------------hccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 202 -------------SVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 202 -------------~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
.+++--.+..++.....+|+ +.++.+.+.+++....|+||++||+.+.+|..++..++..+
T Consensus 638 ~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 638 SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 11111112222222222332 22344567888889999999999999999999888887777
Q ss_pred hcC--CCcEEEeccCHHHHHhcC
Q psy11689 263 KKP--RIPRTNGGYREQTADTAN 283 (390)
Q Consensus 263 ~~~--~~~~i~~~~~~~~i~~t~ 283 (390)
.+. ..|.+.++||+.++-.++
T Consensus 718 ~rlca~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 718 ARLCANRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred HHHhcCCceEEEeeeehheeccc
Confidence 654 678899999987765544
No 174
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.68 E-value=4e-07 Score=84.70 Aligned_cols=178 Identities=13% Similarity=0.044 Sum_probs=85.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
.+..++|+||||||||+|+.+++++.. ..+.++....... ....+++... +..+|+|||++.+-+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~--~~dlliiDdi~~~~~~~ 113 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGME--QLSLVCIDNIECIAGDE 113 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhh--hCCEEEEeChhhhcCCH
Confidence 345799999999999999999998754 2233333322111 1111222211 23699999999987654
Q ss_pred hHHHHH-H---HhhcCC-CcEEEeccCHHHHHhcCchhHHHhH---HHhhhhcCCchhHHHhhcccccccCCCCCCCCcc
Q psy11689 254 YREQTA-D---NAKKPR-IPRTNGGYREQTADTANKPRIQRTK---REYREQTADTAHKTRISRTNRGYREKTADTANKP 325 (390)
Q Consensus 254 ~~~~~~-~---~~~~~~-~~~i~~~~~~~~i~~t~~~~~~r~~---~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~ 325 (390)
..+... . .....+ ...+..++....-...-.+++...+ ....-..++.+.+..++......+....++--+.
T Consensus 114 ~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~ 193 (235)
T PRK08084 114 LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGR 193 (235)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 332222 2 212222 2334434322111111224443222 1111112234455555322112222223333345
Q ss_pred hhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhh
Q psy11689 326 RIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKP 368 (390)
Q Consensus 326 ~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~ 368 (390)
.|+++.+| + .+.+..++.+-...+ ....+.||...+.+.
T Consensus 194 ~L~~~~~~-d--~r~l~~~l~~l~~~~-l~~~~~it~~~~k~~ 232 (235)
T PRK08084 194 FLLKRLDR-E--MRTLFMTLDQLDRAS-ITAQRKLTIPFVKEI 232 (235)
T ss_pred HHHHhhcC-C--HHHHHHHHHHHHHHH-HhcCCCCCHHHHHHH
Confidence 56666554 3 677888887753233 233345776655543
No 175
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.68 E-value=1.2e-07 Score=86.82 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 3566788889999999999999999888777665543 3578888899865444
No 176
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=6e-08 Score=89.92 Aligned_cols=54 Identities=15% Similarity=-0.007 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~ 281 (390)
.+++.+...+|.++++||+.+.+|+.........+..+ +.+.+..+|++..+..
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~ 204 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE 204 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence 36667888999999999999999999988887766553 4788999998766655
No 177
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.67 E-value=1.2e-07 Score=92.90 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+..+++|...+|.++++||+.+.+|+.+.....+.+.. .+.+.+.++|.+..+.. |++
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~ 210 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDC 210 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3445777889999999999999999999998877765544 36889999999887754 554
No 178
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=1.3e-07 Score=94.28 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=74.5
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---------------c
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL---------------A 208 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~---------------~ 208 (390)
++|+|.+.+++.|...+.....++ ..++...+..+||+||||+|||++|+++|..+.+... .
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 399999999999999997654432 2233345778999999999999999999987644210 0
Q ss_pred cccccccCcc---hhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 209 ASAAQLYSPY---VGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 209 i~~~~~~~~~---~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
-..+++..-. .......++.++..+... ...|+||||+|.+-.. ..+.....+..
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-aanaLLk~LEe 143 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-AANALLKAVEE 143 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-HHHHHHHHhhc
Confidence 0111111000 011224477777776543 3469999999998543 33444454444
No 179
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.9e-07 Score=96.28 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=71.0
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-------
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV------- 206 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~------- 206 (390)
|..++....|+++.|.+.+++.+...+... ..+..+||+||+|+|||++|+++|+.+.+..
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 444555666779999999999988877541 2345589999999999999999998765310
Q ss_pred ------hcccc---ccccC--cchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 207 ------LAASA---AQLYS--PYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 207 ------~~i~~---~~~~~--~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
..+.. .++.. .....+...++.+...+. .....|+||||++.+-. ...+.....+..
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-~a~naLLK~LEe 145 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-QSFNALLKTLEE 145 (546)
T ss_pred cccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-HHHHHHHHHHhc
Confidence 01110 01100 000011223444444433 23457999999998643 333444455544
No 180
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.67 E-value=1.6e-07 Score=86.01 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|.+..+.
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4666788889999999999999999888777665543 3577888999876554
No 181
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=3e-07 Score=92.10 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=43.3
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
....+++|.|.+.+++.|...+... ..+..+||+||||+|||++|+++|+.+.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444449999999999888877531 24566999999999999999999988865
No 182
>KOG0057|consensus
Probab=98.67 E-value=8.7e-08 Score=96.27 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=83.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-------------------------------------------------- 201 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-------------------------------------------------- 201 (390)
++.++.|..|.+.|++||||||+.+++-+-
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s 451 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS 451 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence 567889999999999999999999999811
Q ss_pred ------------hccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689 202 ------------SVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263 (390)
Q Consensus 202 ------------~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~ 263 (390)
.+.+-.....++.....+|+ +.++.+..+.+|....|.|+++||+++-+|..++....+.+.
T Consensus 452 as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~ 531 (591)
T KOG0057|consen 452 ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIM 531 (591)
T ss_pred cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHH
Confidence 11111111111111112232 235566788999999999999999999999999999988886
Q ss_pred c--CCCcEEEeccCHHHHHhcCc
Q psy11689 264 K--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 264 ~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
. ...|.+.+.|+..++..++.
T Consensus 532 ~~~~~rTvI~IvH~l~ll~~~Dk 554 (591)
T KOG0057|consen 532 DVMSGRTVIMIVHRLDLLKDFDK 554 (591)
T ss_pred HhcCCCeEEEEEecchhHhcCCE
Confidence 6 47889999999877776665
No 183
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.67 E-value=1.1e-07 Score=99.74 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
+..+-.+++|...+|.|+++||+.+.+|..+.....+.+.. ...+.+..+|++..+..+++
T Consensus 456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~ 518 (569)
T PRK10789 456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASE 518 (569)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCE
Confidence 45566888999999999999999999999998888777654 46788999999766655544
No 184
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=1.6e-07 Score=83.15 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=74.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhcccc--------------------ccccCc-ch-----hhHH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASA--------------------AQLYSP-YV-----GEAE 223 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~--------------------~~~~~~-~~-----g~~~ 223 (390)
++.+.++..+.|.||+|+|||||+++++..... --+.++. +.++.. .+ -...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 456788999999999999999999999965310 0000000 011111 00 0123
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 44566889999999999999999999999888777665543 2467788888875544
No 185
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.67 E-value=9.9e-08 Score=102.39 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+.+.+|..++....+.+... ..+.+.++|++..+..+++
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ 660 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDR 660 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCE
Confidence 4556678889999999999999999999999998888777553 5788999999877766554
No 186
>KOG0651|consensus
Probab=98.66 E-value=1.1e-08 Score=95.92 Aligned_cols=84 Identities=24% Similarity=0.306 Sum_probs=71.6
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|...-.|-|-+|.+|||||+.|+||+| |||++ .+++|. .+++|..|++| ....+..+. +
T Consensus 264 dgfd~l~rVk~ImatNrpdtLdpaLlR--------------pGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~-e 328 (388)
T KOG0651|consen 264 DGFDTLHRVKTIMATNRPDTLDPALLR--------------PGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDD-E 328 (388)
T ss_pred ccchhcccccEEEecCCccccchhhcC--------------CccccceeccCCcchhhceeeEeeccccccccccccH-H
Confidence 334456778899999999999999999 99999 666666 58999999999 445678888 9
Q ss_pred HHHHhhcCCccccccccccccchhh
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIEL 102 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~~ 102 (390)
.+.+..+||.|++++..|+|+++..
T Consensus 329 aivK~~d~f~gad~rn~~tEag~Fa 353 (388)
T KOG0651|consen 329 AILKLVDGFNGADLRNVCTEAGMFA 353 (388)
T ss_pred HHHHHHhccChHHHhhhcccccccc
Confidence 9999999999999999999999753
No 187
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=2.4e-07 Score=96.52 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=67.6
Q ss_pred cccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch---------
Q psy11689 136 GEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV--------- 206 (390)
Q Consensus 136 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~--------- 206 (390)
.++....|+++.|.+.+.+.+...+... ..+..+||+||+|||||++|+.+|+...+.-
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3445566669999999999998887641 2456689999999999999999998765321
Q ss_pred ----hccc---ccccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCC
Q psy11689 207 ----LAAS---AAQLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYN 251 (390)
Q Consensus 207 ----~~i~---~~~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~ 251 (390)
..+. ..++. ....+.+...++.+...+.. ....|+||||++.+-.
T Consensus 76 C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST 133 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 0000 01110 01111233456666666543 3356999999998743
No 188
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.66 E-value=1.9e-07 Score=84.83 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 134 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 134 RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred HHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 34667888889999999999999999888777665533 3677888999876554
No 189
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.65 E-value=5.2e-09 Score=107.80 Aligned_cols=79 Identities=25% Similarity=0.326 Sum_probs=68.1
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
++|+||++||+++.+|+||+| ||||+ .|++|. +.++|.+|++. .++.+++++ +.+|+.|
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r--------------~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l-~~la~~t 256 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLR--------------PGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDL-KAVARRT 256 (495)
T ss_pred CCeEEEEecCChhhcCHHHhc--------------CCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhH-HHHHHhC
Confidence 568999999999999999999 99999 777766 46788998886 345678899 8999999
Q ss_pred cCCccccccccccccchhhh
Q psy11689 84 EGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~~ 103 (390)
.||+|+||..+|.+++..+.
T Consensus 257 ~G~sgadl~~l~~eA~~~a~ 276 (495)
T TIGR01241 257 PGFSGADLANLLNEAALLAA 276 (495)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998877543
No 190
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.65 E-value=1.7e-07 Score=87.04 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~ 283 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..++
T Consensus 141 l~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d 200 (236)
T TIGR03864 141 VEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADD 200 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCC
Confidence 4667888899999999999999999988877665543 3567888888875554333
No 191
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.65 E-value=1.2e-07 Score=99.68 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.++++||+.+.+|..+.....+.+.. ...+.+.++|+...+..+++
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~ 538 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADL 538 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCE
Confidence 355566888999999999999999999999998888776644 36788999999877665554
No 192
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=1.5e-07 Score=81.75 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=74.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccccccccC----------cch--hhHHHHHHHHHHHHHhcC
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASAAQLYS----------PYV--GEAEQNVTQLFHRARLAA 237 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~~~~~~----------~~~--g~~~~~i~~~f~~A~~~~ 237 (390)
++.+.++..+.|.||+|+|||||+++++...... -+.++...... .+. -...+..+..+.++...+
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 4567889999999999999999999999764321 11222211100 000 112234455688888899
Q ss_pred CeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 238 PAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 238 p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
|.++++||+.+-+|..+.....+.+.. ...+.+..+|....+..
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999887766555432 24677888888655544
No 193
>KOG0738|consensus
Probab=98.65 E-value=5.5e-09 Score=100.66 Aligned_cols=85 Identities=22% Similarity=0.323 Sum_probs=70.4
Q ss_pred cchhhh-hhe---eeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcc
Q psy11689 3 VDLVRV-CNT---VLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEE 72 (390)
Q Consensus 3 ~~~~~~-~n~---~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~ 72 (390)
+|++.- .|| |.|+++||-|--||+|++| ||+ .|.||. +.++|...|++ ..++++
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR----------------RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~ 403 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRR----------------RLEKRIYIPLPDAEARSALIKILLRSVELDDP 403 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHH----------------HHhhheeeeCCCHHHHHHHHHHhhccccCCCC
Confidence 355544 456 8999999999999999999 999 444444 27788888887 558889
Q ss_pred cchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689 73 VELSENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 73 v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
+++ +.||+.++||+|+||..+|+++++....
T Consensus 404 ~~~-~~lae~~eGySGaDI~nvCreAsm~~mR 434 (491)
T KOG0738|consen 404 VNL-EDLAERSEGYSGADITNVCREASMMAMR 434 (491)
T ss_pred ccH-HHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999997443
No 194
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.65 E-value=2.1e-07 Score=82.89 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=73.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccc---------------------------ccccCcch--h
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASA---------------------------AQLYSPYV--G 220 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~---------------------------~~~~~~~~--g 220 (390)
++.+.++..+.|.||+|+|||||+++++...... -+.++. .+...... -
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 4567899999999999999999999999653100 000110 01111111 0
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHH
Q psy11689 221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTA 279 (390)
Q Consensus 221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i 279 (390)
...+..+..+.+|...+|.++++||+.+.+|........+.+... ..+.+..+|....+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 123445567889999999999999999999998877766655332 56778888886544
No 195
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.64 E-value=1.3e-07 Score=85.89 Aligned_cols=57 Identities=7% Similarity=-0.062 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHhcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~t~~ 284 (390)
..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+..++.
T Consensus 138 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 138 VALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 4566788889999999999999999888777665543 35788889998877766655
No 196
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.64 E-value=5.4e-08 Score=104.81 Aligned_cols=100 Identities=21% Similarity=0.337 Sum_probs=71.9
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc---------
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY--------- 215 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~--------- 215 (390)
+..|++.+|+.+.+++..... ..-..+..++|+||||+|||++++.+|...+.+++.++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 478999999999887764211 1123567899999999999999999999999888776654322
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
..|.|.....+.+.+..+....| |++|||+|.+...
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~ 431 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSD 431 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccc
Confidence 23445544455556666554555 8999999998754
No 197
>KOG2004|consensus
Probab=98.63 E-value=7.8e-08 Score=98.94 Aligned_cols=98 Identities=20% Similarity=0.373 Sum_probs=76.3
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc---------
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY--------- 215 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~--------- 215 (390)
|=-|++++|+.+.+++.... ++ +-..|.-+.|+||||+|||++++.||..++..|+.++...+.
T Consensus 412 DHYgm~dVKeRILEfiAV~k-----Lr--gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-----LR--GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-----hc--ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 45789999999999886521 11 234688899999999999999999999999988876654322
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
..|+|+....+-+.+......+| +++|||+|.+.
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG 518 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG 518 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC
Confidence 44777777777777777777775 67899999987
No 198
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2e-07 Score=91.83 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+. ..+.+.+.++|....+.. +++
T Consensus 141 q~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~ 206 (351)
T PRK11432 141 QQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDT 206 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 4445578899999999999999999999988877665553 236889999999876543 444
No 199
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.63 E-value=1.6e-07 Score=97.95 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC---CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP---RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~---~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.++++||+.+.+|..+.....+.+... ..+.+..+|+...+..+++
T Consensus 458 Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~ 522 (544)
T TIGR01842 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDK 522 (544)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCE
Confidence 3555678889999999999999999999999988887766543 5788999999766555544
No 200
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=1.9e-07 Score=92.12 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 139 q~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~ 204 (356)
T PRK11650 139 QRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADR 204 (356)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 44456788999999999999999999999888766555432 36889999998765443 443
No 201
>KOG1969|consensus
Probab=98.63 E-value=6.8e-08 Score=99.59 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=78.7
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhc----ccc-------------CHHHhh----hcCCCCCceEEEEcCCCChH
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEW----PFK-------------YAREFE----RLAIPKPKGILLYGPPGCAK 191 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~----~~~-------------~~~~~~----~~~~~~~~~vLl~GppGtGK 191 (390)
-|..++....|.|+-|-+.+-..+..++.. .+. ..+.+. ..+.++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 698899999999998877776666555432 111 001111 12233456799999999999
Q ss_pred HHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHH-HH---hcCCeEEEEcCCCCCC
Q psy11689 192 TSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHR-AR---LAAPAILFIDEIERTY 250 (390)
Q Consensus 192 T~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~-A~---~~~p~il~lDEid~~l 250 (390)
||||+.+|+++|+.++.++.++-... ......+..+... .- -.+|.+|++||||...
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 99999999999999999999875432 2222333332222 11 2679999999999865
No 202
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.62 E-value=2.4e-07 Score=85.12 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTA 282 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t 282 (390)
..+++|...+|.++++||+.+.+|..+.....+.+.. ...+.+..+|++..+..+
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~ 208 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL 208 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 3666788889999999999999999888777665543 357888899987555443
No 203
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.62 E-value=2.6e-07 Score=83.88 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=40.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
.+++|...+|.++++||+.+.+|..+.....+.+.. ...+.+..+|....+.
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 556788889999999999999999888777665533 3577788888875443
No 204
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=2.3e-07 Score=85.19 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA 279 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i 279 (390)
..+++|....|.++++||+.+.+|........+.+.. ...+.+..+|.+..+
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~ 195 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEA 195 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 4666788889999999999999999988877766543 257788899987544
No 205
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.62 E-value=2.6e-07 Score=84.25 Aligned_cols=54 Identities=15% Similarity=-0.023 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4666788889999999999999999988777665533 35788889998765544
No 206
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=2.7e-07 Score=84.29 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA 279 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i 279 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|+...+
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA 194 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 4666788889999999999999999888777666543 256788888986544
No 207
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.62 E-value=2.4e-07 Score=91.35 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 139 q~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~ 204 (353)
T TIGR03265 139 QQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADR 204 (353)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 34455778999999999999999999999887776665533 37889999999876543 443
No 208
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.61 E-value=3.4e-07 Score=83.68 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4566788889999999999999999988777665543 36788889998765543
No 209
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=4.3e-07 Score=94.98 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=75.7
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccc--
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS-- 210 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~-- 210 (390)
.|..+|....|+++.|.+.+++.|...+... ..+..+||+||+|+|||++|+++|+.+.+......
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~ 80 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG 80 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence 3555566666779999999999998887542 34668999999999999999999988765321111
Q ss_pred -----------c--------ccccCc--chhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 211 -----------A--------AQLYSP--YVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 211 -----------~--------~~~~~~--~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
| ++++.. -...+-..++.+...+... ...|+||||++.+-. ...+.....+..
T Consensus 81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-~a~naLLKtLEe 158 (598)
T PRK09111 81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-AAFNALLKTLEE 158 (598)
T ss_pred CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-HHHHHHHHHHHh
Confidence 0 011100 0011234566666655432 357999999998743 233344444444
No 210
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.61 E-value=2.7e-07 Score=84.24 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~ 195 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAM 195 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3566788889999999999999999988777665543 3678888999865443
No 211
>KOG0991|consensus
Probab=98.61 E-value=9.4e-08 Score=86.57 Aligned_cols=106 Identities=18% Similarity=0.305 Sum_probs=76.0
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR----- 205 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~----- 205 (390)
...|.++|....+.||.|-++..+.+.-+... ..-.++++.||||+||||-+.++|+++-.+
T Consensus 14 ~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 14 QLPWVEKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred cchHHHhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 34599999999999999999999998877754 245679999999999999999999886332
Q ss_pred hhccccccccCcchhhHHHHHHHHHHHHHhcCC----eEEEEcCCCCCCCh
Q psy11689 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAP----AILFIDEIERTYNC 252 (390)
Q Consensus 206 ~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p----~il~lDEid~~l~~ 252 (390)
+..++.++-.+- ..-++--+.|+.-+..-| .||++||+|++-+.
T Consensus 81 vLELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g 128 (333)
T KOG0991|consen 81 VLELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG 128 (333)
T ss_pred hhhccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH
Confidence 234554443221 112333356766555443 49999999998754
No 212
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.61 E-value=2.4e-07 Score=91.98 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 149 q~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDr 214 (375)
T PRK09452 149 QQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDR 214 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 34445788999999999999999999999888776655533 36888999998765443 443
No 213
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.61 E-value=1.8e-07 Score=98.18 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.++++||+.+.+|..++....+.+.. ...+.+.++|+...+..+++
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~ 543 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADR 543 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 456667889999999999999999999999988877666644 36888999999766655444
No 214
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.60 E-value=1.9e-07 Score=83.32 Aligned_cols=110 Identities=14% Similarity=0.049 Sum_probs=73.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc----------ch------------hcccccc-----ccCc-ch----
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY----------RV------------LAASAAQ-----LYSP-YV---- 219 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~----------~~------------~~i~~~~-----~~~~-~~---- 219 (390)
++.+.++..+.|.||+|+|||||+++++..... ++ +.+...+ +... ..
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l 99 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence 456788999999999999999999999954210 00 0000000 1110 00
Q ss_pred -----hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 220 -----GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 220 -----g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
-...+..+..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+..
T Consensus 100 ~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 011233455788999999999999999999999888777665543 35778888888654443
No 215
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=2.8e-07 Score=90.58 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.. |++
T Consensus 148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~ 210 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDR 210 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 34667888899999999999999999988877766543 26788999999877654 554
No 216
>PLN03232 ABC transporter C family member; Provisional
Probab=98.59 E-value=1.9e-07 Score=107.72 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.|+.+-.+++|...+|.|+++||+++.+|..++..+.+.+... ..|.+.++||+.++..+++
T Consensus 1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~Dr 1438 (1495)
T PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDK 1438 (1495)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCE
Confidence 4556678899999999999999999999999998888877653 6899999999988888776
No 217
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.59 E-value=1.8e-07 Score=95.20 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=81.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------c----------------------chh------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------Y----------------------RVL------------ 207 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~----------------------~~~------------ 207 (390)
++.+.+|+.+-|+|++|||||||+++++.... . |+.
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i 390 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL 390 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHH
Confidence 56788999999999999999999999992110 0 000
Q ss_pred ------------------------cccc-ccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH
Q psy11689 208 ------------------------AASA-AQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTAD 260 (390)
Q Consensus 208 ------------------------~i~~-~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~ 260 (390)
.+.. +++..+|..+ +.|..+-.+++|....|.+|+.||+.+.+|.....++.+
T Consensus 391 ~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 391 AEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred HhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 0000 1122333322 235566788899999999999999999999988877766
Q ss_pred Hhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 261 NAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 261 ~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+.. .+++.+.++|.+.++.. |++
T Consensus 471 Ll~~lq~e~g~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 471 LLKDLQEELGLTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHHHHHHhCCEEEEEeCCHHHHHhhCce
Confidence 6644 47999999999987765 444
No 218
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.59 E-value=3.4e-07 Score=83.65 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|+...+.
T Consensus 145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4566788889999999999999999888777665533 3577888888865554
No 219
>PRK08727 hypothetical protein; Validated
Probab=98.59 E-value=3.1e-07 Score=85.36 Aligned_cols=178 Identities=13% Similarity=0.065 Sum_probs=87.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY 254 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~ 254 (390)
...++|+||+|||||+|+.+++.++ +..+.++...+. ...+..++.. ..+..+|+|||++.+.....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~--l~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEA--LEGRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHH--HhcCCEEEEeCcccccCChH
Confidence 3559999999999999999998664 333334433221 1223344443 34567999999999876554
Q ss_pred HHHHHHHhh----cCCCcEEEeccCHHHHHhcCchhHHHhHH-HhhhhcC--CchhHHHhhcccccccCCCCCCCCcchh
Q psy11689 255 REQTADNAK----KPRIPRTNGGYREQTADTANKPRIQRTKR-EYREQTA--DTAHKTRISRTNRGYREKTADTANKPRI 327 (390)
Q Consensus 255 ~~~~~~~~~----~~~~~~i~~~~~~~~i~~t~~~~~~r~~~-~~l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~l 327 (390)
.......+. ..+...+..++....-...-.+++...+. .....++ +...+..|+-.....+....++-.+..|
T Consensus 111 ~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~L 190 (233)
T PRK08727 111 DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWL 190 (233)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 333222222 22333444443321111111233432211 1111222 3445555532212212223333345567
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689 328 PRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 328 a~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
+++..|- ...+.+++...-..+...+ +.+|.+.+.+..
T Consensus 191 a~~~~rd---~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l 228 (233)
T PRK08727 191 LTHGERE---LAGLVALLDRLDRESLAAK-RRVTVPFLRRVL 228 (233)
T ss_pred HHhCCCC---HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 7765432 3334444555443333333 467777666543
No 220
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=3.5e-07 Score=90.92 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+ ...+.+.+..+|....+.. +++
T Consensus 154 q~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDr 219 (377)
T PRK11607 154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGR 219 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 344457789999999999999999999998877665333 3347889999999876443 544
No 221
>PLN03130 ABC transporter C family member; Provisional
Probab=98.59 E-value=2e-07 Score=107.80 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.|+.+-.+++|...+|.||+|||+++.+|..++..+.+.+... ..|.+.++||+.++..+++
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~Dr 1441 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR 1441 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCE
Confidence 3556678899999999999999999999999999888877653 6899999999999988876
No 222
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=3.3e-07 Score=86.32 Aligned_cols=53 Identities=23% Similarity=0.036 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~ 193 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAV 193 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4666788889999999999999999888777665543 2577888999865443
No 223
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.2e-07 Score=87.55 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH----HhhcCCCcEEEeccCHHHH
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTAD----NAKKPRIPRTNGGYREQTA 279 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~----~~~~~~~~~i~~~~~~~~i 279 (390)
+.|..+.++++|....|.|++|||+...+|..-...... -....+.+.+.++|...-.
T Consensus 140 GGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea 201 (345)
T COG1118 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEA 201 (345)
T ss_pred hHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHH
Confidence 345666788999999999999999999999765544433 3344589999999986543
No 224
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.9e-07 Score=91.52 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=48.1
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..|..++.+..|.++.|.+.+.+.+...+... ..+..+||+||+|+|||++|+.+|..+.
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34666667777779999999999998888541 2345589999999999999999998865
No 225
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.58 E-value=3.4e-07 Score=83.92 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|+...+.
T Consensus 145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3666788889999999999999999888776665543 3578888999865443
No 226
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.58 E-value=2.7e-07 Score=96.29 Aligned_cols=113 Identities=15% Similarity=0.096 Sum_probs=77.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc------------------------cch-------h--cc---------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV------------------------YRV-------L--AA--------- 209 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~------------------------~~~-------~--~i--------- 209 (390)
++.+++++.+.|.||+|+|||||++.+++... ..+ + .+
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~ 422 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANP 422 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHH
Confidence 56788999999999999999999999992210 000 0 00
Q ss_pred ----------cccccc---C----cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCc
Q psy11689 210 ----------SAAQLY---S----PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIP 268 (390)
Q Consensus 210 ----------~~~~~~---~----~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~ 268 (390)
...... . +..-.+.+..+-.+++|...+|.++++||+.+.+|..++....+.+. ....+
T Consensus 423 ~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~t 502 (547)
T PRK10522 423 ALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKT 502 (547)
T ss_pred HHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 000000 0 00011235566788999999999999999999999998887766553 23678
Q ss_pred EEEeccCHHHHHhcCc
Q psy11689 269 RTNGGYREQTADTANK 284 (390)
Q Consensus 269 ~i~~~~~~~~i~~t~~ 284 (390)
.+.++|++..+..+++
T Consensus 503 vi~itH~~~~~~~~d~ 518 (547)
T PRK10522 503 IFAISHDDHYFIHADR 518 (547)
T ss_pred EEEEEechHHHHhCCE
Confidence 8999999766655554
No 227
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=3.1e-07 Score=87.69 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|++..+..+++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dr 209 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDR 209 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 4677888999999999999999999888777665533 36788999999866655554
No 228
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.58 E-value=2.9e-07 Score=84.27 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC-----CCcEEEeccCHHHHHh
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP-----RIPRTNGGYREQTADT 281 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~-----~~~~i~~~~~~~~i~~ 281 (390)
-+.+|++|....|.++++||+...+|....+.....+... ..+.+.++|+..-+..
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~ 238 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP 238 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc
Confidence 3468999999999999999999999987776655544332 5567888888654433
No 229
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=5.9e-07 Score=93.54 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=45.9
Q ss_pred cccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 136 GEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 136 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
.++....|++|.|.+.+++.|...+... ..+..+||+||+|||||++|+++|+.+.+
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4455666779999999999998887641 23445899999999999999999987664
No 230
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=4.6e-07 Score=84.10 Aligned_cols=53 Identities=17% Similarity=0.021 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 4666788889999999999999999988877666544 2578888999876544
No 231
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=4.5e-07 Score=95.22 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=46.7
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
|.+++....|++|.|.+.+++.|...+... ..+..+||+||+|+|||++++++|+.+.+
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445566666779999999999998877531 23456899999999999999999988653
No 232
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.57 E-value=3.9e-07 Score=88.01 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+++|...+|.++++||+.+.+|+.......+.+.. .+.+.+..+|.+..+.. |++
T Consensus 132 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~ 193 (302)
T TIGR01188 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDR 193 (302)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 34677888999999999999999999888777665533 36788899999876653 554
No 233
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.5e-06 Score=85.88 Aligned_cols=210 Identities=14% Similarity=0.220 Sum_probs=112.2
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----hhccccccccCcc-
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR-----VLAASAAQLYSPY- 218 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~-----~~~i~~~~~~~~~- 218 (390)
.+.+-++..+++...+...+. -..|.++++|||||||||+.++.++.+..-+ +++++|......+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 466667777777776543222 1355679999999999999999999886543 6778876544332
Q ss_pred --------------hhhHH-HHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhcC------CCcEEEeccCH
Q psy11689 219 --------------VGEAE-QNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKKP------RIPRTNGGYRE 276 (390)
Q Consensus 219 --------------~g~~~-~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~~------~~~~i~~~~~~ 276 (390)
.|... +....++.... ....-||+|||+|.+++... ..+-.+... ++..+..++..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--EVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--hHHHHHHhhccccceeEEEEEEeccH
Confidence 11111 22222333222 34567999999999998764 222222111 12223333333
Q ss_pred HHHHhcCchhHHHhHHHhhhhcCCc--hhHHHhhcc--cccccCCCCCCCCcchhhh---cCCCCCCCcHHHHHHHHHHH
Q psy11689 277 QTADTANKPRIQRTKREYREQTADT--AHKTRISRT--NRGYREKTADTANKPRIPR---TNRGYREYSAQNANTANKPR 349 (390)
Q Consensus 277 ~~i~~t~~~~~~r~~~~~l~~l~~~--~~r~~I~~~--n~~~r~~~~~~vdl~~la~---~t~gfs~~gaDL~~l~~~A~ 349 (390)
.. ....++++...+......++++ .+-..|+.. +........++--++-+|. ...| + ..=--.+++.|+
T Consensus 167 ~~-~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-D--AR~aidilr~A~ 242 (366)
T COG1474 167 KF-LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-D--ARKAIDILRRAG 242 (366)
T ss_pred HH-HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-c--HHHHHHHHHHHH
Confidence 22 2223333332222222223332 222223211 1111111122222333333 3333 2 223356789999
Q ss_pred HHHHHccccccChhhhhhhH
Q psy11689 350 IQRTKREYREQTADTANKPR 369 (390)
Q Consensus 350 ~~a~~r~~~~i~~~~~~~~~ 369 (390)
..|-+++..+++.+++.++.
T Consensus 243 eiAe~~~~~~v~~~~v~~a~ 262 (366)
T COG1474 243 EIAEREGSRKVSEDHVREAQ 262 (366)
T ss_pred HHHHhhCCCCcCHHHHHHHH
Confidence 99999999999999999983
No 234
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=4.1e-07 Score=83.55 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAE 196 (220)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3666888889999999999999999888776665533 2567888889875544
No 235
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=4.1e-07 Score=82.91 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+.
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 4667888889999999999999999887766655533 3567888888865443
No 236
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.57 E-value=3.9e-07 Score=82.61 Aligned_cols=54 Identities=9% Similarity=-0.032 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|+...+.
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~ 189 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhh
Confidence 34677888899999999999999999888777665532 3677888888754443
No 237
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=4.5e-07 Score=84.11 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTA 282 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t 282 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 3566788889999999999999999988777665543 357888899987554443
No 238
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=3.9e-07 Score=81.03 Aligned_cols=109 Identities=22% Similarity=0.224 Sum_probs=74.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---chh----ccc------------------cccccCc-ch------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---RVL----AAS------------------AAQLYSP-YV------ 219 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---~~~----~i~------------------~~~~~~~-~~------ 219 (390)
++.+.++..+.|.||+|+|||||+++++..... .+. .+. .+.++.. ..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 466789999999999999999999999954210 000 000 0011110 00
Q ss_pred -hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---C-CCcEEEeccCHHHHH
Q psy11689 220 -GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---P-RIPRTNGGYREQTAD 280 (390)
Q Consensus 220 -g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~-~~~~i~~~~~~~~i~ 280 (390)
-...+..+..+.+|...+|.++++||+.+.+|..+.....+.+.. . ..+.+..+|....+.
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 112345567889999999999999999999999888777665533 2 467788888865544
No 239
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.56 E-value=4.5e-07 Score=85.50 Aligned_cols=108 Identities=22% Similarity=0.241 Sum_probs=71.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc----------ch------h-cc-ccccccCc----------chh---
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY----------RV------L-AA-SAAQLYSP----------YVG--- 220 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~----------~~------~-~i-~~~~~~~~----------~~g--- 220 (390)
++.+.++..+.|.||+|+|||||+++|+..... +. + ++ ..+.++.. ...
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~ 111 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHH
Confidence 456789999999999999999999999944210 00 0 00 00000000 000
Q ss_pred -----------------------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEec
Q psy11689 221 -----------------------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGG 273 (390)
Q Consensus 221 -----------------------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~ 273 (390)
...+..+..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+
T Consensus 112 ~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01122334667888899999999999999999988777665533 357888899
Q ss_pred cCHHHH
Q psy11689 274 YREQTA 279 (390)
Q Consensus 274 ~~~~~i 279 (390)
|....+
T Consensus 192 Hd~~~~ 197 (257)
T PRK11247 192 HDVSEA 197 (257)
T ss_pred CCHHHH
Confidence 986554
No 240
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.56 E-value=4.2e-07 Score=85.40 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=72.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c---------cchhc----c------cccccc--C-c--------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V---------YRVLA----A------SAAQLY--S-P-------- 217 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~---------~~~~~----i------~~~~~~--~-~-------- 217 (390)
++.+.++..+.|.||+|+|||||+++++... | +-++. + ...+.. . .
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP 103 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHH
Confidence 4667899999999999999999999999542 1 00000 0 000000 0 0
Q ss_pred -------------chh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHH
Q psy11689 218 -------------YVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQT 278 (390)
Q Consensus 218 -------------~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~ 278 (390)
... ...+..+..+++|...+|.++++||+.+.+|..+.....+.+.. ...+.+..+|....
T Consensus 104 ~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 104 ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred HHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 000 01233345777889999999999999999999888776665532 26788889998766
Q ss_pred HH
Q psy11689 279 AD 280 (390)
Q Consensus 279 i~ 280 (390)
+.
T Consensus 184 i~ 185 (251)
T PRK09544 184 VM 185 (251)
T ss_pred HH
Confidence 54
No 241
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.56 E-value=4.1e-07 Score=87.99 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+++|..++|.++++||+.+.+|+.......+.+.. .+.+.+..+|.+..+.. |++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 34677889999999999999999999988777665543 36788999999877654 554
No 242
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3.8e-07 Score=90.49 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 139 ~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~ 203 (369)
T PRK11000 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 203 (369)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCE
Confidence 3345777889999999999999999999887766554432 36788999999865543 443
No 243
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=4.9e-07 Score=83.79 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~ 205 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK 205 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4666788889999999999999999988777665543 2678888999876554
No 244
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.56 E-value=3.7e-07 Score=82.34 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=68.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cch-------h-ccc-cccccC-cch-----------h
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRV-------L-AAS-AAQLYS-PYV-----------G 220 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~-------~-~i~-~~~~~~-~~~-----------g 220 (390)
++.+.++..+.|.||+|+|||||+++++.... .++ + ++. ...+.. ..+ +
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc
Confidence 45678999999999999999999999995421 000 0 000 000000 000 0
Q ss_pred -------------------------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEe
Q psy11689 221 -------------------------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNG 272 (390)
Q Consensus 221 -------------------------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~ 272 (390)
...+..+-.+.+|...+|.++++||+.+.+|........+.+. ....+.+..
T Consensus 100 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 179 (195)
T PRK13541 100 SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS 179 (195)
T ss_pred cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0112233466678888999999999999999988776655443 345677777
Q ss_pred ccCHHH
Q psy11689 273 GYREQT 278 (390)
Q Consensus 273 ~~~~~~ 278 (390)
+|....
T Consensus 180 sh~~~~ 185 (195)
T PRK13541 180 SHLESS 185 (195)
T ss_pred eCCccc
Confidence 776543
No 245
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.56 E-value=4.8e-07 Score=83.06 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|.+..+.
T Consensus 142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 196 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 3566788889999999999999999888777665533 2467788888876554
No 246
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.55 E-value=4.7e-07 Score=82.90 Aligned_cols=54 Identities=11% Similarity=-0.024 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~ 280 (390)
+..+.+|...+|.++++||+.+.+|........+.+. ..+.+.+..+|....+.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 3466788888999999999999999988777665553 23677888888875544
No 247
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.55 E-value=1.3e-08 Score=100.92 Aligned_cols=81 Identities=28% Similarity=0.380 Sum_probs=69.9
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
.+++.++++||+++.+|++++| ||||+ .|++|. +.++|.+|+.+ +.+.+++++ +.||+.
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r--------------~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~-~~la~~ 323 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLR--------------PGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL-EAIAKM 323 (364)
T ss_pred CCCEEEEEecCChhhCChhhcC--------------cccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH-HHHHHH
Confidence 4689999999999999988888 99999 677666 47889999876 556778899 889999
Q ss_pred hcCCccccccccccccchhhhc
Q psy11689 83 EEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
|.||+|+||..+|.++++.+..
T Consensus 324 t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 324 TEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
No 248
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.55 E-value=6.8e-07 Score=82.73 Aligned_cols=52 Identities=15% Similarity=0.016 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTA 279 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i 279 (390)
..+.+|....|.++++||+.+.+|........+.+. ....+.+..+|.+..+
T Consensus 142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~ 196 (232)
T cd03218 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET 196 (232)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 366678888999999999999999988877665443 3356778888886443
No 249
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.55 E-value=6.4e-07 Score=82.72 Aligned_cols=56 Identities=20% Similarity=0.092 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~ 283 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d 214 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCD 214 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 3556778889999999999999999888777665532 2567888889876554433
No 250
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.8e-08 Score=101.50 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=67.3
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCc----
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSP---- 217 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~---- 217 (390)
.|.|.+.....+..++..... -+.. .-+|-.++||.||+|+|||-||+++|..+. -.++.++.++++..
T Consensus 492 rViGQd~AV~avs~aIrraRa---GL~d-p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARA---GLGD-PNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhc---CCCC-CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 477778877777777754211 1111 123446799999999999999999998886 67778888776633
Q ss_pred --------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689 218 --------YVGEAEQNVTQLFHRARLAAPAILFIDEIERT 249 (390)
Q Consensus 218 --------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~ 249 (390)
|+|-.+. ..+-...+..+.|||+|||++..
T Consensus 568 rLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 568 RLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhc
Confidence 4443331 12444455667799999999973
No 251
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=4.4e-07 Score=86.63 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~ 284 (390)
..+.+|...+|.+|++||+.+.+|........+.+.. .+.+.+..+|.+..+..+++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~ 209 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADR 209 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence 4667888899999999999999999988877665543 26788899998766654443
No 252
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.55 E-value=4.9e-07 Score=82.28 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|..........+.. ...+.+..+|.+..+.
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 190 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ 190 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3566788889999999999999999888776655533 3577888889876554
No 253
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.8e-07 Score=91.34 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=85.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHH----------------------------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLA---------------------------------------------------- 199 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia---------------------------------------------------- 199 (390)
++.++++..+.++||+|+|||++.+.+-
T Consensus 283 sf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~ 362 (497)
T COG5265 283 SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP 362 (497)
T ss_pred cccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc
Confidence 5567889999999999999999999987
Q ss_pred -----------HhhccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 200 -----------AHSVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 200 -----------~~~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
+....+.+....|+.+...+|+ +.++.+.+.+++....|.|+++||+.+.+|..++..++..+
T Consensus 363 ~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l 442 (497)
T COG5265 363 DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442 (497)
T ss_pred cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHH
Confidence 1111222333445554444443 22455668889999999999999999999999999888777
Q ss_pred hc--CCCcEEEeccCHHHHHhcCc
Q psy11689 263 KK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 263 ~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.. .+-|.+.++||+.+|..++.
T Consensus 443 ~~~~~~rttlviahrlsti~~ade 466 (497)
T COG5265 443 REVSAGRTTLVIAHRLSTIIDADE 466 (497)
T ss_pred HHHhCCCeEEEEeehhhhccCCce
Confidence 44 47889999999988877664
No 254
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.54 E-value=6.3e-07 Score=83.99 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=71.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----c-----c--hh--------cccccccc-----------------
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----Y-----R--VL--------AASAAQLY----------------- 215 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~-----~--~~--------~i~~~~~~----------------- 215 (390)
+.+.++..+.|.||+|+|||||+++++.... + . ++ .....+.+
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 3456789999999999999999999994421 0 0 00 00000000
Q ss_pred ----------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689 216 ----------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA 279 (390)
Q Consensus 216 ----------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i 279 (390)
....+ ...+..+..+++|....|.++++||+.+.+|........+.+.. ...+.+.++|....+
T Consensus 100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 00000 11233345777889999999999999999999888776655543 367888999987655
Q ss_pred H
Q psy11689 280 D 280 (390)
Q Consensus 280 ~ 280 (390)
.
T Consensus 180 ~ 180 (246)
T cd03237 180 D 180 (246)
T ss_pred H
Confidence 4
No 255
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=5.6e-07 Score=92.55 Aligned_cols=58 Identities=22% Similarity=0.177 Sum_probs=46.0
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
|..+|....++++.|.+.+++.+...+... .-+..+||+||+|+|||++++++|+.+.
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 344555666669999999999998887541 2455679999999999999999998763
No 256
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.54 E-value=6.1e-07 Score=82.79 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=71.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchh------ccc----ccccc----------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVL------AAS----AAQLY---------------- 215 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~------~i~----~~~~~---------------- 215 (390)
++.+.++..+.|.||+|+|||||+++++.... .+.. .+. ..+..
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 121 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE 121 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHH
Confidence 56788999999999999999999999994321 0000 000 00000
Q ss_pred ---------------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccC
Q psy11689 216 ---------------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYR 275 (390)
Q Consensus 216 ---------------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~ 275 (390)
...+. ...+..+..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|.
T Consensus 122 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 122 KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 00000 01123334677888899999999999999999877766555432 35678888888
Q ss_pred HHHHHh
Q psy11689 276 EQTADT 281 (390)
Q Consensus 276 ~~~i~~ 281 (390)
...+..
T Consensus 202 ~~~~~~ 207 (224)
T cd03220 202 PSSIKR 207 (224)
T ss_pred HHHHHH
Confidence 755543
No 257
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.54 E-value=2.8e-07 Score=85.82 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=81.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccc-------------------------cccccCcchhh--H
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAAS-------------------------AAQLYSPYVGE--A 222 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~-------------------------~~~~~~~~~g~--~ 222 (390)
++.+..++.+.|+|.+||||||+++++..-.... -+.+. ..+...+|..+ +
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 5667899999999999999999999998443210 00000 01122333322 3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~ 284 (390)
.|..+-.+++|...+|.+++.||+.+.+|.....++...+.. .+++.+.++|...++..-.+
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 466667889999999999999999999998777666555433 47899999999888776433
No 258
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.1e-06 Score=91.41 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=44.1
Q ss_pred cCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 138 EEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 138 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
+.+..|++|.|.+.+++.+...+... ..+..+||+||+|+|||++|+++|+.+.+
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 34445559999999999998888541 23456999999999999999999988764
No 259
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.54 E-value=3.3e-07 Score=105.16 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~~ 284 (390)
.|+.+-.+++|...+|.||+|||+++.+|..++..+.+.+... ..|.+.++||+.++..+++
T Consensus 1362 GQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~ 1427 (1466)
T PTZ00265 1362 GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDK 1427 (1466)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCE
Confidence 4555668889999999999999999999999998888877654 6899999999988877765
No 260
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=5.5e-07 Score=85.72 Aligned_cols=57 Identities=11% Similarity=0.010 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH-hcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD-TANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~-~t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+. .+++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~ 207 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQ 207 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 4666888899999999999999999988777665533 3678899999987654 3444
No 261
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.1e-07 Score=89.80 Aligned_cols=108 Identities=30% Similarity=0.363 Sum_probs=73.5
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhh-hcCC-CCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-Ccchhh
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFE-RLAI-PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVGE 221 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~~g~ 221 (390)
-+.|.+..|+.+.-++..+.+...... +-.+ -..+++||.||.|||||.||..+|+.++.||-.-++..+. .+|+|+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGE 141 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGE 141 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccch
Confidence 356666666665544433222211111 0001 1246799999999999999999999999999988887766 678888
Q ss_pred HHHH-HHHHHHHH----HhcCCeEEEEcCCCCCCCh
Q psy11689 222 AEQN-VTQLFHRA----RLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 222 ~~~~-i~~~f~~A----~~~~p~il~lDEid~~l~~ 252 (390)
.-.+ +.++++.| .+.+..||++||+|.+..+
T Consensus 142 DVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 142 DVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred hHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 6655 44555543 4456689999999998754
No 262
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.53 E-value=9.8e-07 Score=93.65 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchhcccccc
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVLAASAAQ 213 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~~i~~~~ 213 (390)
+.+.+-++..++|..++...+. +-.++..++|+|+||||||++++.+..++. +.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 3566666666666666654322 112333456999999999999999986542 4456777744
Q ss_pred ccCcc--------------h--h-hHHHHHHHHHHHHH--hcCCeEEEEcCCCCCCCh
Q psy11689 214 LYSPY--------------V--G-EAEQNVTQLFHRAR--LAAPAILFIDEIERTYNC 252 (390)
Q Consensus 214 ~~~~~--------------~--g-~~~~~i~~~f~~A~--~~~p~il~lDEid~~l~~ 252 (390)
+...+ . + .....+..+|.... .....||+|||+|.+...
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK 884 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc
Confidence 22111 0 1 12234445565442 234579999999999875
No 263
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=4.8e-07 Score=85.87 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~ 283 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d 210 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEAD 210 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCC
Confidence 4666888889999999999999999988777665543 2578888889876554443
No 264
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.53 E-value=7.4e-07 Score=82.56 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 179 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEAL 179 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4666788889999999999999999988877665543 3578889999875543
No 265
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.53 E-value=3.8e-07 Score=81.86 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYRE 276 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~ 276 (390)
..+++|....|.++++||+.+.+|........+.+.. .+.+.+..+|.+
T Consensus 136 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 136 VAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 3566788889999999999999999887776655533 256777777764
No 266
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=5.8e-07 Score=81.99 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+.
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 3566788889999999999999999988877666543 2578888999876553
No 267
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.53 E-value=1.4e-06 Score=80.45 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
..+..++|+||+|||||+|+++++++. +.+++++++.+... .+ .......+|+|||++.+-+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------------~~--~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------------AF--DFDPEAELYAVDDVERLDD 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------------HH--hhcccCCEEEEeChhhcCc
Confidence 356789999999999999999999875 34555666544311 11 1233567999999998643
No 268
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.53 E-value=5.6e-07 Score=86.95 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.. |++
T Consensus 144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~ 204 (303)
T TIGR01288 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR 204 (303)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 4666888899999999999999999988777665543 36788999999876643 544
No 269
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.53 E-value=5.6e-07 Score=83.21 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+..
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 197 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARE 197 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHH
Confidence 3556788889999999999999999988877665543 25788899998765553
No 270
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.53 E-value=6.1e-07 Score=82.83 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~ 283 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d 205 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHAD 205 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCC
Confidence 4667888889999999999999999887766654433 2567888888865554333
No 271
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=6.2e-07 Score=81.80 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+... ..+.+..+|....+.
T Consensus 139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~ 193 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE 193 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 46667888899999999999999998887776655432 477788888876554
No 272
>KOG0745|consensus
Probab=98.52 E-value=1.1e-07 Score=92.94 Aligned_cols=72 Identities=33% Similarity=0.516 Sum_probs=61.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-CcchhhH-HHHHHHHHHHH----HhcCCeEEEEcCCCCCC
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVGEA-EQNVTQLFHRA----RLAAPAILFIDEIERTY 250 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~~g~~-~~~i~~~f~~A----~~~~p~il~lDEid~~l 250 (390)
.+|||.||+|+|||.|++.+|+-++.||..-+|..+. .+|+|+. +..+.+++..| .+.+..||||||+|.+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 5699999999999999999999999999999998876 6788874 45677777766 45677899999999988
No 273
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=3.6e-07 Score=80.87 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=68.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----------------------------cchhc--------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----------------------------YRVLA-------------- 208 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----------------------------~~~~~-------------- 208 (390)
++.+.++..+.+.||+|||||||.+.+|.-.. +|+..
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi 104 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGI 104 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence 56788999999999999999999999992100 01000
Q ss_pred ---------------cccccccCcch--hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCC
Q psy11689 209 ---------------ASAAQLYSPYV--GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRI 267 (390)
Q Consensus 209 ---------------i~~~~~~~~~~--g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~ 267 (390)
+...+.-.+|. -++.+..+.-.++|....|..+++||+...+|.-+.+..+..+.. .+.
T Consensus 105 ~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk 184 (259)
T COG4525 105 EKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK 184 (259)
T ss_pred CHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 00000001111 112233345667899999999999999999998877776555433 456
Q ss_pred cEEEeccCH
Q psy11689 268 PRTNGGYRE 276 (390)
Q Consensus 268 ~~i~~~~~~ 276 (390)
..+.++|.+
T Consensus 185 ~~lliTH~i 193 (259)
T COG4525 185 QVLLITHDI 193 (259)
T ss_pred eEEEEeccH
Confidence 677788864
No 274
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.52 E-value=4.1e-07 Score=105.05 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.|+.+-.+++|...+|.||+|||+++.+|..++..+.+.+.. ...|.+.++||+.++..+++
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~Dr 1488 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1488 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 456667889999999999999999999999999888887755 36899999999988888775
No 275
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.52 E-value=7.2e-07 Score=81.42 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR 199 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3556788889999999999999999887766665543 3567888888876553
No 276
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.51 E-value=7.1e-07 Score=86.16 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|..++|.++++||+.+.+|........+.+... ..+.+..+|.+..+.. |++
T Consensus 142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE
Confidence 46778899999999999999999998887766555332 5778888998875543 554
No 277
>PRK05642 DNA replication initiation factor; Validated
Probab=98.51 E-value=7.9e-07 Score=82.67 Aligned_cols=175 Identities=10% Similarity=0.026 Sum_probs=86.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY 254 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~ 254 (390)
...++|+||+|+|||+|+++++++. +..+++++..++... ...+..... +.++|+|||++.+.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCChH
Confidence 3678999999999999999998764 345556666554331 112222222 336999999998876544
Q ss_pred HHHHHHHh----hcCCCcEEEeccCHHHHHhcCchhHHHhH---H-HhhhhcCCchhHHHhhcccccccCCCCCCCCcch
Q psy11689 255 REQTADNA----KKPRIPRTNGGYREQTADTANKPRIQRTK---R-EYREQTADTAHKTRISRTNRGYREKTADTANKPR 326 (390)
Q Consensus 255 ~~~~~~~~----~~~~~~~i~~~~~~~~i~~t~~~~~~r~~---~-~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~ 326 (390)
.+.....+ ...+...+..++....-...-.+++...+ . ..+. .++...+..++......+....++--++.
T Consensus 115 ~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~-~~~~e~~~~il~~ka~~~~~~l~~ev~~~ 193 (234)
T PRK05642 115 WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMR-GLSDEDKLRALQLRASRRGLHLTDEVGHF 193 (234)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 33322222 22233344444322111111123332211 1 1111 22334444443211111222223223345
Q ss_pred hhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhh
Q psy11689 327 IPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANK 367 (390)
Q Consensus 327 la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~ 367 (390)
|+++.++ + ++.+..++..-...+.. ..+.||..-+++
T Consensus 194 L~~~~~~-d--~r~l~~~l~~l~~~~l~-~~~~it~~~~~~ 230 (234)
T PRK05642 194 ILTRGTR-S--MSALFDLLERLDQASLQ-AQRKLTIPFLKE 230 (234)
T ss_pred HHHhcCC-C--HHHHHHHHHHHHHHHHH-cCCcCCHHHHHH
Confidence 5655443 3 67777777766543333 335577655443
No 278
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.51 E-value=5.8e-07 Score=81.42 Aligned_cols=55 Identities=5% Similarity=-0.054 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
+..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+..
T Consensus 135 rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 135 QVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 34666888889999999999999999888777665543 35677778887544433
No 279
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.51 E-value=6.2e-07 Score=93.80 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+.+.+|..++....+.+. ....+.+.++|++.++..+++
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~ 539 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ 539 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 35556688899999999999999999999999887765442 346889999999876655554
No 280
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.51 E-value=6.9e-07 Score=85.05 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
+..+..+++|....|.|+++||+.+.+|........+.+.. ...+.+.++|++..+..+++
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dr 205 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQR 205 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCE
Confidence 34455778899999999999999999999988777666653 35788899999876665554
No 281
>PRK10908 cell division protein FtsE; Provisional
Probab=98.51 E-value=8.1e-07 Score=81.74 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|.+..+..
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3566788889999999999999999887766554432 35778888898765543
No 282
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.51 E-value=5.8e-07 Score=86.39 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CC-CcEEEeccCHHHHHh-cCc
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PR-IPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~-~~~i~~~~~~~~i~~-t~~ 284 (390)
+.+..++.|..+.|.++|+||+.+-+|+.......+.+.. .+ .+.+..+|.+..+.. |++
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE
Confidence 3445777889999999999999999999988877665543 34 678888898876655 553
No 283
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=1.1e-06 Score=92.80 Aligned_cols=120 Identities=12% Similarity=0.146 Sum_probs=75.8
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc--
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA-- 209 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i-- 209 (390)
..|..++.+..+++|.|.+.+++.+...+... ..+..+||+||+|+|||++|+++|..+.+.-...
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~ 73 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL 73 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC
Confidence 45666667777779999999999998888642 2456689999999999999999998765421100
Q ss_pred -c---c-------cccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 210 -S---A-------AQLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 210 -~---~-------~~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
. | .+.+ ......+...++.+...+.. ....|++|||++.+-. ...+.....+..
T Consensus 74 ~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-~A~NALLKtLEE 144 (725)
T PRK07133 74 EPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-SAFNALLKTLEE 144 (725)
T ss_pred CchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-HHHHHHHHHhhc
Confidence 0 0 0110 00001123446666666543 3457999999998643 333344444444
No 284
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=6.6e-07 Score=83.01 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcC
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTAN 283 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~ 283 (390)
..+..+.+|...+|.++++||+.+.+|........+.+... +.+.+..+|....+..++
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d 203 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNAD 203 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCC
Confidence 34457788899999999999999999998887766655332 567788888865554433
No 285
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.51 E-value=6.4e-07 Score=88.45 Aligned_cols=59 Identities=22% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+..+++|...+|.|+++||+.+.+|+.......+.+.. .+.+.+.++|.+..+.. +++
T Consensus 136 QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~dr 199 (363)
T TIGR01186 136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDR 199 (363)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 334677899999999999999999999988877766543 36788999999875433 443
No 286
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=6.5e-07 Score=85.36 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..+++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~ 209 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDR 209 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence 4666888889999999999999999988877666532 26788999998876655443
No 287
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.1e-06 Score=91.91 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=70.6
Q ss_pred ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch----------
Q psy11689 137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV---------- 206 (390)
Q Consensus 137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~---------- 206 (390)
++....|++|.|.+.+++.|...+... ..+..+||+||+|+|||++++++|+.+.+.-
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 344555569999999999998887541 2456689999999999999999998875421
Q ss_pred ---hccc---ccccc--CcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 207 ---LAAS---AAQLY--SPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 207 ---~~i~---~~~~~--~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
..+. ..++. ......+...++.+...+... ...|+||||++.+- ....+.....+..
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-~~a~naLLk~LEe 145 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-TNAFNALLKTLEE 145 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-HHHHHHHHHHHHc
Confidence 0000 00110 111111224466666555322 33599999999764 3334444455544
No 288
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.51 E-value=6.4e-07 Score=82.22 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD 280 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~ 280 (390)
.+..+++|...+|.++++||+.+.+|........+.+... ..+.+..+|....+.
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 3456777888899999999999999999888776666442 357778888765443
No 289
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.50 E-value=5.4e-07 Score=96.04 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~ 284 (390)
+..+-.+++|...+|.++++||+.+.+|........+.+...+.+.+.++|+...+..+++
T Consensus 587 qkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~ 647 (659)
T TIGR00954 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEY 647 (659)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCE
Confidence 4455688899999999999999999999999888888877778889999999876655554
No 290
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.50 E-value=7.7e-07 Score=80.26 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=72.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh--ccc--hhccc------------------cccccCc-ch---------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS--VYR--VLAAS------------------AAQLYSP-YV--------- 219 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~--~~~--~~~i~------------------~~~~~~~-~~--------- 219 (390)
++.+.++..+.|.||+|+|||||+++++... ... -+.++ ...++.. ..
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 4567899999999999999999999999865 210 00000 0011110 00
Q ss_pred ---hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHH
Q psy11689 220 ---GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQ 277 (390)
Q Consensus 220 ---g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~ 277 (390)
-...+..+..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|.+.
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 012244456788999999999999999999999888776655533 3567788888763
No 291
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.50 E-value=6.8e-07 Score=88.10 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|....+.. +++
T Consensus 141 q~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dr 206 (353)
T PRK10851 141 QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADR 206 (353)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 33445777899999999999999999999888776655533 36788999999876544 443
No 292
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.50 E-value=6.2e-07 Score=81.25 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=74.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc--c--chhccccc----------------------cccC---------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--Y--RVLAASAA----------------------QLYS--------- 216 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~--~--~~~~i~~~----------------------~~~~--------- 216 (390)
++.+.++..+.|.||+|+|||||+++++.... . --+.++.. .+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~ 99 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR 99 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence 45678999999999999999999999997621 0 00001000 0000
Q ss_pred cc--hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 217 PY--VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 217 ~~--~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
.. .-...+..+..+.+|...+|.++++||+.+.+|..+.....+.+.. ...+.+..+|.+..+.
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 00 0012244556888999999999999999999999887776665543 2567888888865544
No 293
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.9e-07 Score=90.89 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=79.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccch-----------------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRV----------------------------------- 206 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~----------------------------------- 206 (390)
++.+.+|+.+.|.|++||||||+++.+++.. |.+.
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~ 437 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP 437 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC
Confidence 5678899999999999999999999999211 0011
Q ss_pred ------------------hccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 207 ------------------LAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 207 ------------------~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
...+.++....|+|+ +.+.-+-..+++..+...++++||++..+|+.++.++++.+
T Consensus 438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll 517 (573)
T COG4987 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL 517 (573)
T ss_pred CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH
Confidence 011111122223332 22444567888888899999999999999999999988877
Q ss_pred hc--CCCcEEEeccCHHHHHhcCc
Q psy11689 263 KK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 263 ~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.. ...+.+.++|+..-+..+++
T Consensus 518 ~~~~~~kTll~vTHrL~~le~~dr 541 (573)
T COG4987 518 FEHAEGKTLLMVTHRLRGLERMDR 541 (573)
T ss_pred HHHhcCCeEEEEecccccHhhcCE
Confidence 44 36788999998755555554
No 294
>KOG2028|consensus
Probab=98.50 E-value=1.6e-07 Score=90.01 Aligned_cols=67 Identities=36% Similarity=0.593 Sum_probs=49.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccc---hhccccccccCcchhhHHHHHHHHHHHHHhc-----CCeEEEEcCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYR---VLAASAAQLYSPYVGEAEQNVTQLFHRARLA-----APAILFIDEIER 248 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~---~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~-----~p~il~lDEid~ 248 (390)
.-.+++|.||||||||+||+.|+..+.-+ |+.++.. ...-+.++.+|+.++.. ...||||||+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 34569999999999999999999887644 4444432 23346688888887543 357999999998
Q ss_pred CC
Q psy11689 249 TY 250 (390)
Q Consensus 249 ~l 250 (390)
+-
T Consensus 234 FN 235 (554)
T KOG2028|consen 234 FN 235 (554)
T ss_pred hh
Confidence 63
No 295
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.50 E-value=7.4e-07 Score=81.85 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=40.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
.+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|.+..+.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL 196 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 555777888999999999999999988777665543 3577888889875543
No 296
>PTZ00243 ABC transporter; Provisional
Probab=98.50 E-value=5.2e-07 Score=104.21 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAA-PAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~-p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.|+.+-.+++|...+ |.||+|||+++.+|..++..+.+.+... ..|.+.++||+.++..+++
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~Dr 1513 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDK 1513 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCE
Confidence 355566888998885 8999999999999999999888877553 6899999999988888776
No 297
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=6.9e-07 Score=82.50 Aligned_cols=57 Identities=23% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhc
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTA 282 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t 282 (390)
.+..+++|...+|.++++||+.+.+|........+.+... ..+.+..+|....+..+
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 204 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA 204 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence 3456778888999999999999999998887766555432 46778888876554433
No 298
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.49 E-value=7.5e-07 Score=81.12 Aligned_cols=53 Identities=9% Similarity=-0.052 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLP 191 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhc
Confidence 4566788889999999999999999888777665543 3677788888754443
No 299
>PRK06620 hypothetical protein; Validated
Probab=98.49 E-value=1e-06 Score=80.84 Aligned_cols=165 Identities=10% Similarity=0.001 Sum_probs=78.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT 258 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~ 258 (390)
..++||||||||||+|++++++..+..++. .... .... ....++++|||++.+-+ ..--..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~-----~~~~d~lliDdi~~~~~-~~lf~l 105 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEI-----LEKYNAFIIEDIENWQE-PALLHI 105 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhH-----HhcCCEEEEeccccchH-HHHHHH
Confidence 679999999999999999999887643322 1000 0011 12347999999995421 111122
Q ss_pred HHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHH-Hhhhh--cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCC
Q psy11689 259 ADNAKKPRIPRTNGGYREQTADTANKPRIQRTKR-EYREQ--TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYR 335 (390)
Q Consensus 259 ~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~-~~l~~--l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs 335 (390)
...+...+...+..+...-. .-.- +++.-.+. ..... .++...+..++......+....++--+..|+++..| +
T Consensus 106 ~N~~~e~g~~ilits~~~p~-~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d 182 (214)
T PRK06620 106 FNIINEKQKYLLLTSSDKSR-NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-E 182 (214)
T ss_pred HHHHHhcCCEEEEEcCCCcc-ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-C
Confidence 22222334334444432111 0011 33321111 00111 223344444431111112222333334556666543 3
Q ss_pred CCcHHHHHHHHHHHHHHHHccccccChhhhhhh
Q psy11689 336 EYSAQNANTANKPRIQRTKREYREQTADTANKP 368 (390)
Q Consensus 336 ~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~ 368 (390)
.+.+..++......+...+ +.||...+++.
T Consensus 183 --~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~ 212 (214)
T PRK06620 183 --YSKIIEILENINYFALISK-RKITISLVKEV 212 (214)
T ss_pred --HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 6777777777543333333 46777666543
No 300
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.48 E-value=9.4e-07 Score=86.69 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|..++|.++++||+.+.+|+.......+.+.. .+.+.+..+|.+..+.. |++
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 4666888899999999999999999988777665543 36788999999877654 554
No 301
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.48 E-value=8.2e-07 Score=87.78 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---C--CCcEEEeccCHHHHHh-cCc
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---P--RIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~--~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+.++++|...+|.++++||+.+.+|..........+.. . +.+.+.++|....+.. +++
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dr 208 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADK 208 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCE
Confidence 335677889999999999999999999887777665532 2 5788999999876543 443
No 302
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=1e-06 Score=83.91 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~~ 284 (390)
..+++|...+|.++++||+.+.+|..+.....+.+. ..+.+.+..+|.+..+..+++
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~ 204 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADR 204 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCE
Confidence 366688889999999999999999988777666553 346788999998776654443
No 303
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.48 E-value=9.9e-07 Score=82.04 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=41.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~ 280 (390)
.+.+|...+|.++++||+.+.+|........+.+... ..+.+..+|....+.
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 218 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIE 218 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 5667888899999999999999999888777655432 567888888875543
No 304
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=7.9e-07 Score=82.39 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcC
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~ 283 (390)
..+-.+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+..++
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d 204 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENAD 204 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCC
Confidence 3445677888899999999999999999988777665543 2567788888775554443
No 305
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.48 E-value=7.9e-07 Score=82.66 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcC
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~ 283 (390)
.+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..|+
T Consensus 146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d 205 (238)
T cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNAD 205 (238)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCC
Confidence 344677888889999999999999999888777665533 3567788888765554433
No 306
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=9.5e-07 Score=82.23 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|++..+.
T Consensus 145 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~ 201 (239)
T cd03296 145 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEAL 201 (239)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3566788889999999999999999988777665543 2578888999875443
No 307
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=8e-07 Score=84.85 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..+++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~ 213 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADR 213 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCE
Confidence 3556788889999999999999999988877665543 36788999998876654443
No 308
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.48 E-value=1.2e-06 Score=79.43 Aligned_cols=108 Identities=18% Similarity=0.300 Sum_probs=67.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh-----hccch----hccccccccCc------------chhhHHHHHHHHH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-----SVYRV----LAASAAQLYSP------------YVGEAEQNVTQLF 230 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-----~~~~~----~~i~~~~~~~~------------~~g~~~~~i~~~f 230 (390)
++.+..++.++|.||+|+|||||+++++.. .|.++ +.+....++.. ........+..++
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL 98 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIV 98 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHH
Confidence 444556788999999999999999999843 23221 00000001100 0111124466777
Q ss_pred HHHHhcCCeEEEEcCCCCCCChhhHHHH----HHHhhcCCCcEEEeccCHHHH
Q psy11689 231 HRARLAAPAILFIDEIERTYNCEYREQT----ADNAKKPRIPRTNGGYREQTA 279 (390)
Q Consensus 231 ~~A~~~~p~il~lDEid~~l~~r~~~~~----~~~~~~~~~~~i~~~~~~~~i 279 (390)
+.+....|+++++||+.+.++....... ...+.....+.+..+|....+
T Consensus 99 ~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~ 151 (199)
T cd03283 99 EKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELA 151 (199)
T ss_pred HhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHH
Confidence 7766668999999999999998765433 233444567778888876443
No 309
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.48 E-value=9.5e-07 Score=82.05 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhc
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTA 282 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t 282 (390)
.+..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..+
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~ 203 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNA 203 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 345677888899999999999999999988877665543 256778888887555433
No 310
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=9e-07 Score=79.66 Aligned_cols=106 Identities=19% Similarity=0.082 Sum_probs=71.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh------c-c-----ch-------h-cc-ccccccCc-ch----------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS------V-Y-----RV-------L-AA-SAAQLYSP-YV---------- 219 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~------~-~-----~~-------~-~i-~~~~~~~~-~~---------- 219 (390)
++.+.+++.+.|.||+|+|||||+++++... | + ++ + ++ ..+.++.. .+
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 4567889999999999999999999999631 1 0 00 0 00 00011110 00
Q ss_pred --hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHH
Q psy11689 220 --GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQ 277 (390)
Q Consensus 220 --g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~ 277 (390)
-...+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+.
T Consensus 107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 011234456788999999999999999999999888776665533 3577888888764
No 311
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.47 E-value=1e-06 Score=80.63 Aligned_cols=52 Identities=17% Similarity=0.073 Sum_probs=40.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
.+.+|...+|.++++||+.+.+|..+.....+.+.. ...+.+..+|....+.
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 555777888999999999999999988777665533 2567888888865443
No 312
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=9.5e-07 Score=86.24 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+..+++|...+|.+|++||+.+.+|......+.+.+.. .+.+.+.++|.+..+.. +++
T Consensus 161 QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adr 224 (327)
T PRK11308 161 QRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADE 224 (327)
T ss_pred HHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 334667888899999999999999999888877665533 36889999999888764 554
No 313
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=1.6e-06 Score=88.13 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=43.8
Q ss_pred cCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 138 EEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 138 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
+....|++|.|.+.+++.+...+... ..+..+||+||||+|||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34445559999999999988887541 24567999999999999999999987643
No 314
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.1e-06 Score=82.08 Aligned_cols=53 Identities=21% Similarity=0.082 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA 279 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i 279 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|++..+
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA 199 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 34667888889999999999999999888776665543 257788888987544
No 315
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.47 E-value=1.9e-07 Score=82.49 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=48.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhcc----chhccccccccCcchhhHHHHHHHHHH----HHHhcCCeEEEEcCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVY----RVLAASAAQLYSPYVGEAEQNVTQLFH----RARLAAPAILFIDEIER 248 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~----~~~~i~~~~~~~~~~g~~~~~i~~~f~----~A~~~~p~il~lDEid~ 248 (390)
|...+||+||+|+|||.|++++|..+.. +++.++++++... +..+..+...+. .....+..||+|||+|.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4567999999999999999999999986 8888888876651 011111111111 11112223999999999
Q ss_pred CCC
Q psy11689 249 TYN 251 (390)
Q Consensus 249 ~l~ 251 (390)
...
T Consensus 80 a~~ 82 (171)
T PF07724_consen 80 AHP 82 (171)
T ss_dssp CSH
T ss_pred ccc
Confidence 765
No 316
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.47 E-value=8.8e-07 Score=80.03 Aligned_cols=49 Identities=10% Similarity=-0.045 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYRE 276 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~ 276 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|..
T Consensus 136 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 136 LALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 4566788889999999999999999877766655543 356777777764
No 317
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=5.2e-07 Score=94.57 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=79.2
Q ss_pred CccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 130 ERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 130 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
....|.+++....++++.|.+...+.+..++... .++..+++.++|+||||||||++++++|++.+..++..
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew 141 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW 141 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 3457999999999999999999999888877542 22334567799999999999999999999988766542
Q ss_pred -ccc---cccCcc------------hhhHHHHHHHHHHHHHh----------cCCeEEEEcCCCCCCCh
Q psy11689 210 -SAA---QLYSPY------------VGEAEQNVTQLFHRARL----------AAPAILFIDEIERTYNC 252 (390)
Q Consensus 210 -~~~---~~~~~~------------~g~~~~~i~~~f~~A~~----------~~p~il~lDEid~~l~~ 252 (390)
+.. .....+ .....+.+..++..|.. ....||||||++.++..
T Consensus 142 ~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r 210 (637)
T TIGR00602 142 SNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR 210 (637)
T ss_pred hhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh
Confidence 111 000000 01222445555555542 34679999999987743
No 318
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.47 E-value=9.6e-07 Score=87.12 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|....+.. +++
T Consensus 136 RvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADR 198 (352)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCE
Confidence 34677888999999999999999999888766655533 26788999999865543 443
No 319
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.47 E-value=7.9e-07 Score=81.22 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+.
T Consensus 141 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~ 196 (213)
T cd03235 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVL 196 (213)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3566788889999999999999999888776665533 3577888999876554
No 320
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.47 E-value=1.3e-06 Score=81.04 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|++..+..
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 208 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMS 208 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 3556778889999999999999999888777665533 45778889998765543
No 321
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.46 E-value=1e-06 Score=88.18 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+..+++|..++|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.. +++
T Consensus 146 QRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adr 208 (402)
T PRK09536 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDE 208 (402)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 345777899999999999999999999887766654432 36788889999877654 554
No 322
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.3e-06 Score=80.93 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+...+|........+.+.. .+.+.+..+|+...+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~ 195 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEAL 195 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4666788889999999999999999988877655533 2678888889875543
No 323
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.1e-06 Score=83.50 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA 279 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i 279 (390)
..+++|....|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+
T Consensus 169 v~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~ 224 (269)
T cd03294 169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEA 224 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3566788889999999999999999988777665533 257888888986544
No 324
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.46 E-value=1.1e-06 Score=83.19 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=71.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chhc----c----cccccc------Ccc--------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVLA----A----SAAQLY------SPY-------- 218 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~~----i----~~~~~~------~~~-------- 218 (390)
++.+.++..+.|.||+|+|||||++++++.... .+.. + ...+.+ ..+
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 123 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM 123 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 567889999999999999999999999954210 0000 0 000000 000
Q ss_pred -----------------hh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCH
Q psy11689 219 -----------------VG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYRE 276 (390)
Q Consensus 219 -----------------~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~ 276 (390)
.+ .+.+..+-.+++|....|.++++||+.+.+|........+.+. ....+.+..+|..
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~ 203 (264)
T PRK13546 124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL 203 (264)
T ss_pred HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 00 0122333467788889999999999999999887766655543 3467888888886
Q ss_pred HHHH
Q psy11689 277 QTAD 280 (390)
Q Consensus 277 ~~i~ 280 (390)
..+.
T Consensus 204 ~~i~ 207 (264)
T PRK13546 204 GQVR 207 (264)
T ss_pred HHHH
Confidence 5543
No 325
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.46 E-value=1.4e-06 Score=79.18 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=74.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cch-----------h-cc-cccccc-----------Cc
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRV-----------L-AA-SAAQLY-----------SP 217 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~-----------~-~i-~~~~~~-----------~~ 217 (390)
++.+.++..+.|.||+|+|||||+++++.... .+. + ++ ..+.++ ..
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~ 107 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE 107 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCC
Confidence 45678999999999999999999999994311 000 0 00 000000 00
Q ss_pred ch----------------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHH
Q psy11689 218 YV----------------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTA 279 (390)
Q Consensus 218 ~~----------------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i 279 (390)
+. -...+..+..+++|...+|.++++||+.+.+|........+.+... ..+.+..+|....+
T Consensus 108 ~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 108 YSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred CCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 00 0012344567888899999999999999999998887766655432 56778888887655
Q ss_pred HhcC
Q psy11689 280 DTAN 283 (390)
Q Consensus 280 ~~t~ 283 (390)
..++
T Consensus 188 ~~~d 191 (207)
T cd03369 188 IDYD 191 (207)
T ss_pred hhCC
Confidence 4443
No 326
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1e-06 Score=83.38 Aligned_cols=53 Identities=8% Similarity=-0.048 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.|+++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~ 212 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4666888899999999999999999988766665533 2578888999876554
No 327
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.1e-06 Score=90.07 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=43.5
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
....|++|.|.+.+++.|...+... .-+..+||+||+|+|||++|+++|+.+.+
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444559999999999988876431 34566999999999999999999988865
No 328
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.2e-06 Score=81.48 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=40.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
.+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 555778889999999999999999888777665543 2578888999875554
No 329
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.1e-06 Score=83.47 Aligned_cols=54 Identities=11% Similarity=-0.045 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..
T Consensus 145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 201 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYE 201 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3566788889999999999999999888776665533 35778888998766543
No 330
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.1e-06 Score=83.78 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH-hcCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD-TANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~-~t~~ 284 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+. .+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr 207 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADY 207 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 34677888999999999999999999887776665532 2678899999887664 4554
No 331
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.45 E-value=1.4e-06 Score=80.00 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhc
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTA 282 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t 282 (390)
.+..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+..+
T Consensus 146 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 204 (221)
T cd03244 146 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS 204 (221)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence 345677888899999999999999999988877666643 245677888876544433
No 332
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=9.5e-07 Score=83.93 Aligned_cols=56 Identities=11% Similarity=-0.000 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcC
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTAN 283 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~ 283 (390)
..+.+|...+|.++++||+.+.+|........+.+... ..+.+..+|....+..++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d 210 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILAD 210 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCC
Confidence 45667888899999999999999998887776666442 367788888865544333
No 333
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=7.5e-07 Score=81.11 Aligned_cols=56 Identities=21% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA 279 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i 279 (390)
|..+...++|...+|.||+-||+-+.+|+.+...+++.+.. .++|.+..-|.+...
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA 211 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA 211 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH
Confidence 34455777899999999999999999999999988887744 478888888876443
No 334
>CHL00176 ftsH cell division protein; Validated
Probab=98.45 E-value=2.7e-08 Score=104.69 Aligned_cols=79 Identities=27% Similarity=0.315 Sum_probs=67.5
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
.++|+++++||+++.+|+||+| ||||+ .|.++. +.++|.+||+. ..+.+++++ +.+|+.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlR--------------pGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l-~~lA~~ 383 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLR--------------PGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSL-ELIARR 383 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhc--------------cccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHH-HHHHhc
Confidence 4579999999999999999999 99999 555544 37899999986 346778899 889999
Q ss_pred hcCCccccccccccccchhh
Q psy11689 83 EEGIAGENLQRGGGEEGIEL 102 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~ 102 (390)
|.||+|+||..++.+++...
T Consensus 384 t~G~sgaDL~~lvneAal~a 403 (638)
T CHL00176 384 TPGFSGADLANLLNEAAILT 403 (638)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999987753
No 335
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.45 E-value=8.1e-07 Score=79.08 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+...++|..+.|+++++||+.+.+|-.+.....+.+ .+.+...+..+|-+.-+.+ |++
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 346778999999999999999999988776655544 4457778888888766653 444
No 336
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.45 E-value=1.2e-06 Score=75.27 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTA 279 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i 279 (390)
+..+.+.++|..++|.|+++||+.+.+|+.-..++.+.+ ...+++.+..+|.+.+.
T Consensus 146 qqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va 204 (242)
T COG4161 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA 204 (242)
T ss_pred hhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH
Confidence 444568889999999999999999999998777665544 44589999999976543
No 337
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.3e-06 Score=83.13 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|++..+.. |++
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~ 206 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADK 206 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 3666788889999999999999999988777665543 36788999999876653 444
No 338
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.44 E-value=4.2e-07 Score=88.47 Aligned_cols=101 Identities=22% Similarity=0.330 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH---HH
Q psy11689 151 GVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA---EQ 224 (390)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~---~~ 224 (390)
...+.+..++.....+.+.|.. ...+++|+||+|+|||+|+.|+|+++ |..+++++..+++....... ..
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~----~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~ 235 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDK----NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDK 235 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccch
Confidence 3445555555544556666652 44889999999999999999999875 55666777666544332110 00
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQ 257 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~ 257 (390)
.....+ ......++|+|||+...........
T Consensus 236 ~~~~~~--~~l~~~DLLIIDDlG~e~~t~~~~~ 266 (329)
T PRK06835 236 ELEEVY--DLLINCDLLIIDDLGTEKITEFSKS 266 (329)
T ss_pred hHHHHH--HHhccCCEEEEeccCCCCCCHHHHH
Confidence 111112 2334668999999988765544443
No 339
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.44 E-value=1.3e-06 Score=80.41 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+.+|....|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 4667888889999999999999999888777665533 3567788888865543
No 340
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.44 E-value=1.2e-06 Score=82.45 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 146 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA 201 (256)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3566788888999999999999999888776665543 3577888889876653
No 341
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.44 E-value=1.4e-06 Score=81.08 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 200 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAE 200 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3566788889999999999999999888776665532 3577888888865543
No 342
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.44 E-value=7.7e-07 Score=102.61 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.||+|||+++.+|..++..+.+.+... ..|.+.++||+.++..+++
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~Dr 1420 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQ 1420 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 3555668889999999999999999999999999888877653 6899999999988888776
No 343
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.3e-06 Score=80.94 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 3566788889999999999999999887766655533 2568888889876544
No 344
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.44 E-value=1.3e-06 Score=82.86 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.|+++||+.+.+|........+.+.. .+.+.+..+|+...+..
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~ 215 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKH 215 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH
Confidence 4566788889999999999999999888776665543 26788899998766554
No 345
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.44 E-value=1.2e-06 Score=85.54 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+++|...+|.+|++||+.+.+|......+.+.+.. .+.+.+.++|.+..+.. +++
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 34666888899999999999999999888777665533 36789999999887764 554
No 346
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.44 E-value=1.4e-06 Score=81.22 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA 279 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i 279 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4666788889999999999999999888776665533 256788888886544
No 347
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.4e-06 Score=81.22 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
.+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 138 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~ 196 (241)
T PRK14250 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAK 196 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 334667888889999999999999999887776665543 3678888999875544
No 348
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.43 E-value=1.8e-06 Score=79.59 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcC
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~ 283 (390)
.+-.+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|.+..+..++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d 216 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERAD 216 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCC
Confidence 334667888889999999999999999888776665543 2467788888876554443
No 349
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.4e-06 Score=83.24 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH-hcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD-TANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~-~t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+. .|++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dr 211 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDN 211 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 3666788889999999999999999888766554432 2678899999987765 3554
No 350
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.43 E-value=1.5e-06 Score=82.44 Aligned_cols=53 Identities=9% Similarity=-0.086 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+... +.+.+..+|.+..+.
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 45667888899999999999999998887766655432 578888999865443
No 351
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.4e-06 Score=87.10 Aligned_cols=54 Identities=20% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
..+++|....|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..
T Consensus 173 v~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~ 230 (400)
T PRK10070 173 VGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR 230 (400)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 4666888899999999999999999988777665543 36788999999866543
No 352
>PRK12377 putative replication protein; Provisional
Probab=98.43 E-value=4.6e-07 Score=84.76 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=51.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHH--HHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAE--QNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~--~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
..+++|+||||||||+|+.++|+.+ +..++.+..++++......-. .....++.. ....++|+|||+...-..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCCCCC
Confidence 4689999999999999999999876 345555655555443211100 011122222 357789999999876555
Q ss_pred hhHHHHH
Q psy11689 253 EYREQTA 259 (390)
Q Consensus 253 r~~~~~~ 259 (390)
.......
T Consensus 179 ~~~~~~l 185 (248)
T PRK12377 179 KNEQVVL 185 (248)
T ss_pred HHHHHHH
Confidence 5444433
No 353
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=1.5e-06 Score=80.67 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
.+..+++|...+|.++++||+.+.+|..+.......+.. .+.+.+..+|.+..+.
T Consensus 136 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~ 194 (235)
T cd03299 136 QRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAW 194 (235)
T ss_pred HHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 335667888889999999999999999888777665543 2678888888875544
No 354
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.42 E-value=1.3e-06 Score=76.51 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQT 278 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~ 278 (390)
+..+.+++++......|+++||+.+.+|+.-..+....+ .....|.+.++|.+.-
T Consensus 134 qRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D 192 (231)
T COG3840 134 QRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192 (231)
T ss_pred HHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 455567888888888899999999999998777765544 3347888899987643
No 355
>PLN03232 ABC transporter C family member; Provisional
Probab=98.42 E-value=1.1e-06 Score=101.30 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=81.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc---hhc-------------------------------------cc-
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR---VLA-------------------------------------AS- 210 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~---~~~-------------------------------------i~- 210 (390)
++.+++|+.+.++||+|||||||+++++++.... ... +.
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~ 716 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDV 716 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHH
Confidence 5678899999999999999999999999442100 000 00
Q ss_pred ---------cccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEe
Q psy11689 211 ---------AAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNG 272 (390)
Q Consensus 211 ---------~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~ 272 (390)
.++.....+|+ +.|+.+-.+++|...+|.|+++||+.+.+|...+....+.... ...|.+.+
T Consensus 717 ~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~Ilv 796 (1495)
T PLN03232 717 TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLV 796 (1495)
T ss_pred hCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEE
Confidence 00000111222 3467778999999999999999999999999988877655422 46789999
Q ss_pred ccCHHHHHhcCc
Q psy11689 273 GYREQTADTANK 284 (390)
Q Consensus 273 ~~~~~~i~~t~~ 284 (390)
+|++..+..+++
T Consensus 797 TH~~~~l~~aD~ 808 (1495)
T PLN03232 797 TNQLHFLPLMDR 808 (1495)
T ss_pred ECChhhHHhCCE
Confidence 999988776665
No 356
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.41 E-value=7.6e-06 Score=77.25 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=39.5
Q ss_pred CCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689 322 ANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQ 371 (390)
Q Consensus 322 vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~ 371 (390)
-.+..|.+.+.|+- . .|..++..+...|..++...|+.+++..++-.
T Consensus 219 ~~~~~i~~~s~G~p--~-~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 219 GAFDAIHRFSRGIP--R-LINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHHHHcCCcc--c-HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34567789999985 4 49999999999999999999999999988743
No 357
>KOG0060|consensus
Probab=98.41 E-value=8e-07 Score=89.92 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYRE 276 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~ 276 (390)
+..+..|++...++|.+.|+||.++.++...+...-+.....++|.+.++||.
T Consensus 575 EqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRk 627 (659)
T KOG0060|consen 575 EQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRK 627 (659)
T ss_pred HHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHH
Confidence 44567899999999999999999999999999988899999999999999984
No 358
>PRK08181 transposase; Validated
Probab=98.41 E-value=3e-07 Score=87.04 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=52.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH-HHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA-EQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
.+.+++|+||||||||+|+.+++.++ |..+++++.++++....... .....+.+.. ..++++|+|||+......
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEeccccccCC
Confidence 56789999999999999999998653 56677777666654432111 1122233333 356789999999887654
Q ss_pred hhHH
Q psy11689 253 EYRE 256 (390)
Q Consensus 253 r~~~ 256 (390)
....
T Consensus 183 ~~~~ 186 (269)
T PRK08181 183 QAET 186 (269)
T ss_pred HHHH
Confidence 4433
No 359
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.41 E-value=1.7e-06 Score=85.48 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.. +++
T Consensus 140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~ 201 (354)
T TIGR02142 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADR 201 (354)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 4666888889999999999999999988777665543 26788999999876544 443
No 360
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.41 E-value=5e-07 Score=84.32 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=52.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh---HHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE---AEQNVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~---~~~~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
..+++|+|+||||||+|+.++|.++ +..++.++.++++...... .......++.. ....++|+|||++....
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~--l~~~dlLvIDDig~~~~ 176 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLND--LSNVDLLVIDEIGVQTE 176 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH--hccCCEEEEeCCCCCCC
Confidence 3589999999999999999999886 4566666666655432211 11122234443 34688999999998765
Q ss_pred hhhHHHH
Q psy11689 252 CEYREQT 258 (390)
Q Consensus 252 ~r~~~~~ 258 (390)
.......
T Consensus 177 s~~~~~~ 183 (244)
T PRK07952 177 SRYEKVI 183 (244)
T ss_pred CHHHHHH
Confidence 5544433
No 361
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.9e-06 Score=82.64 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH-hcCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD-TANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~-~t~~ 284 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+. .|++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr 214 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADR 214 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 34666788889999999999999999888777665532 2678899999976654 3554
No 362
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=2.5e-06 Score=79.59 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 205 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3566788889999999999999999887776665543 3677888888875543
No 363
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=1.5e-06 Score=79.68 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=76.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc------------chhcccc---ccc-----------c----------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY------------RVLAASA---AQL-----------Y---------- 215 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~------------~~~~i~~---~~~-----------~---------- 215 (390)
++.+..+..+-|.|++|+|||||.+.||.-... +++.+.. +++ +
T Consensus 47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~ 126 (249)
T COG1134 47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE 126 (249)
T ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHH
Confidence 567889999999999999999999999932110 0000000 000 0
Q ss_pred -----------Ccch------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccC
Q psy11689 216 -----------SPYV------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYR 275 (390)
Q Consensus 216 -----------~~~~------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~ 275 (390)
+.+. -.+....+..|+-|....|.|+++||+-+..|..+.......+ .....+.+.++|.
T Consensus 127 ~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 127 KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred HHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 0000 0123445678889999999999999999999998876554433 3345888999999
Q ss_pred HHHHHh-cCc
Q psy11689 276 EQTADT-ANK 284 (390)
Q Consensus 276 ~~~i~~-t~~ 284 (390)
...+.. ||+
T Consensus 207 ~~~I~~~Cd~ 216 (249)
T COG1134 207 LGAIKQYCDR 216 (249)
T ss_pred HHHHHHhcCe
Confidence 876654 555
No 364
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.4e-06 Score=79.63 Aligned_cols=53 Identities=11% Similarity=-0.040 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+ ...+.+.+..+|....+.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~ 201 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETL 201 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHH
Confidence 46668888899999999999999998776554433 334677888889864443
No 365
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.40 E-value=7.8e-07 Score=82.02 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=80.4
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhh
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~ 221 (390)
++.|++.+++.+.+....++. -.+..++||+|+.|||||++++++..+.. +.++.+...++
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L------- 91 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL------- 91 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh-------
Confidence 999999999999877754322 14678899999999999999999997654 44444444332
Q ss_pred HHHHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHh
Q psy11689 222 AEQNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREY 294 (390)
Q Consensus 222 ~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~ 294 (390)
..+..++...+ ...+-|||+|++. +-.....-.....+..-.+... -.++.+-+|+||+.+.......
T Consensus 92 --~~l~~l~~~l~~~~~kFIlf~DDLs-Fe~~d~~yk~LKs~LeGgle~~--P~NvliyATSNRRHLv~E~~~d 160 (249)
T PF05673_consen 92 --GDLPELLDLLRDRPYKFILFCDDLS-FEEGDTEYKALKSVLEGGLEAR--PDNVLIYATSNRRHLVPESFSD 160 (249)
T ss_pred --ccHHHHHHHHhcCCCCEEEEecCCC-CCCCcHHHHHHHHHhcCccccC--CCcEEEEEecchhhccchhhhh
Confidence 23455666554 3345699999865 2222223333344433333211 2334456778887776544433
No 366
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.40 E-value=2.4e-06 Score=80.59 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=39.3
Q ss_pred HHHHHHh------cCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCHHHHH
Q psy11689 229 LFHRARL------AAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~------~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~~~i~ 280 (390)
.+.+|.. ..|.++++||+.+.+|........+.+. ..+.+.+..+|.+..+.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 205 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA 205 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 5556776 4899999999999999988776665553 33577888888875554
No 367
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.39 E-value=2.2e-06 Score=79.75 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---C-CCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---P-RIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~-~~~~i~~~~~~~~i~ 280 (390)
.+.+|...+|.++++||+.+-+|........+.+.. . ..+.+..+|+...+.
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~ 195 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAM 195 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 555777788999999999999999988777666543 2 578888888875543
No 368
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.39 E-value=3.3e-06 Score=76.58 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=72.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----------cchh---------------cccc---c----c-----
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----------YRVL---------------AASA---A----Q----- 213 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----------~~~~---------------~i~~---~----~----- 213 (390)
++.+.++..+.|.||+|+|||||+++++.... +.++ .... . +
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~ 104 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC 104 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHc
Confidence 45678999999999999999999999994421 0000 0000 0 0
Q ss_pred -c---c-----------Ccch--hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHH-h---hcCCCcEEEe
Q psy11689 214 -L---Y-----------SPYV--GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADN-A---KKPRIPRTNG 272 (390)
Q Consensus 214 -~---~-----------~~~~--g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~-~---~~~~~~~i~~ 272 (390)
+ + .... -...+..+..+++|...+|.++++||+.+.+|........+. + .....+.+..
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~ 184 (204)
T cd03250 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV 184 (204)
T ss_pred CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 0 0 0000 012234455777888999999999999999999877666553 2 2235778888
Q ss_pred ccCHHHHHhcC
Q psy11689 273 GYREQTADTAN 283 (390)
Q Consensus 273 ~~~~~~i~~t~ 283 (390)
+|+...+..++
T Consensus 185 sh~~~~~~~~d 195 (204)
T cd03250 185 THQLQLLPHAD 195 (204)
T ss_pred eCCHHHHhhCC
Confidence 88876555443
No 369
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2e-06 Score=82.24 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=43.6
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..+++
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~ 212 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQ 212 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 555788889999999999999999888777665533 26788899998766655544
No 370
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.39 E-value=2.4e-06 Score=78.50 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~ 283 (390)
..+.+|...+|.++++||+.+.+|..........+.. ...+.+..+|.......++
T Consensus 150 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d 209 (220)
T TIGR02982 150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVAD 209 (220)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence 3566788889999999999999999887766655533 3678888999875443333
No 371
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.39 E-value=2.2e-06 Score=80.75 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|++..+..+++
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dr 223 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADL 223 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCE
Confidence 34456778889999999999999999999887766655543 35677888888765554443
No 372
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.38 E-value=4.8e-07 Score=83.27 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=50.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhc-----cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSV-----YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~-----~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
..+.||||+|+|||+|+.+++++.. ..+++++..++...+.......-..-|... ....++|+||+++.+.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDR-LRSADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHH-HCTSSEEEEETGGGGTTHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhh-hhcCCEEEEecchhhcCch
Confidence 4589999999999999999997743 445666666655443332221111223322 3366899999999998875
Q ss_pred hHH
Q psy11689 254 YRE 256 (390)
Q Consensus 254 ~~~ 256 (390)
..+
T Consensus 114 ~~q 116 (219)
T PF00308_consen 114 RTQ 116 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 373
>PRK06526 transposase; Provisional
Probab=98.37 E-value=5.8e-07 Score=84.49 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=49.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH-HHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA-EQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
.+.+++|+||||||||+|+.+++.++ |..+..+...+++....... .......+.. ...+++|+|||++..-..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCCCC
Confidence 56789999999999999999998664 55665665555443322110 0112222222 346789999999987544
Q ss_pred hh
Q psy11689 253 EY 254 (390)
Q Consensus 253 r~ 254 (390)
..
T Consensus 175 ~~ 176 (254)
T PRK06526 175 PE 176 (254)
T ss_pred HH
Confidence 33
No 374
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.1e-06 Score=89.07 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=72.1
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc-----
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA----- 208 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~----- 208 (390)
|..+|....|++|.|.+.+++.|...+... ..+..+|||||+|+|||++++++|+...+....
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 344555666679999999999998887531 245669999999999999999999876532100
Q ss_pred ---------ccc---ccc--cCcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 209 ---------ASA---AQL--YSPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 209 ---------i~~---~~~--~~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
+.. .++ +..........++.+...+... ...|+||||++.+-. ...+.....+..
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-~a~naLLK~LEe 147 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-AAFNAFLKTLEE 147 (614)
T ss_pred CCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-HHHHHHHHHHhC
Confidence 000 000 0000011124455565555322 345999999998743 233344445444
No 375
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=2.4e-06 Score=78.12 Aligned_cols=52 Identities=25% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
.+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHH
Confidence 555778888999999999999999888777665543 2567888899876554
No 376
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.4e-06 Score=80.26 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 3566788889999999999999999888777665543 2578888999875553
No 377
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.4e-07 Score=92.97 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=77.5
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc----
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA---- 208 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~---- 208 (390)
.|..++....|+++.|.+.+++.|...+... .-+..+||+||+|+|||++|+++|+.+.+....
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~ 72 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP 72 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC
Confidence 3555666677779999999999998888641 134579999999999999999999887652110
Q ss_pred ccc--------------cccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhcC
Q psy11689 209 ASA--------------AQLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKKP 265 (390)
Q Consensus 209 i~~--------------~~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~~ 265 (390)
-.| .++. ..........++.+...+.. ....|+||||++.+- ....+.....+...
T Consensus 73 ~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-~~a~naLLK~LEeP 148 (620)
T PRK14948 73 EPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-TAAFNALLKTLEEP 148 (620)
T ss_pred CCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-HHHHHHHHHHHhcC
Confidence 000 0110 11112234567777766643 234699999999863 33344445555543
No 378
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.4e-06 Score=81.88 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH-hcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD-TANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~-~t~~ 284 (390)
..+++|...+|.|+++||+.+.+|........+.+. ..+.+.+..+|.+..+. .+++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dr 213 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADY 213 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 466678888999999999999999988776665543 23678899999876554 3444
No 379
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.37 E-value=2.9e-06 Score=78.19 Aligned_cols=53 Identities=19% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~ 280 (390)
..+++|....|.++++||+.+.+|........+.+... +.+.+..+|.+..+.
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 210 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVA 210 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 35567788889999999999999998887776655332 578888999876554
No 380
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2.4e-06 Score=80.82 Aligned_cols=53 Identities=9% Similarity=-0.066 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQAC 208 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4667888899999999999999999888777665533 2567888888875443
No 381
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.4e-06 Score=81.79 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH-hcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD-TANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~-~t~~ 284 (390)
..+++|...+|.|+++||+.+.+|........+.+.. .+.+.+..+|.+..+. .+++
T Consensus 154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 4566788889999999999999999988877665543 3688899999986654 3444
No 382
>PRK09183 transposase/IS protein; Provisional
Probab=98.36 E-value=6.8e-07 Score=84.36 Aligned_cols=78 Identities=28% Similarity=0.376 Sum_probs=50.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh-HHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE-AEQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~-~~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
+..+.+++|+||||||||+|+.+++... |..+.+++..++...+... ....+...|... ...+++++|||+...-
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3567899999999999999999997653 4555555555544332211 111233455443 4577899999998764
Q ss_pred Chh
Q psy11689 251 NCE 253 (390)
Q Consensus 251 ~~r 253 (390)
..+
T Consensus 178 ~~~ 180 (259)
T PRK09183 178 FSQ 180 (259)
T ss_pred CCh
Confidence 433
No 383
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=2.7e-06 Score=80.04 Aligned_cols=53 Identities=6% Similarity=-0.023 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|.+..+.
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~ 202 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 3566788889999999999999999888777665533 3577888888875543
No 384
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.35 E-value=3.3e-06 Score=79.08 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+. ..+.+.+..+|....+.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~ 208 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFAR 208 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 355677888999999999999999988877765443 23677888888865443
No 385
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.1e-06 Score=80.50 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~ 206 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVT 206 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3566788889999999999999999888777665533 3677888999875543
No 386
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.35 E-value=3.1e-06 Score=80.10 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|....|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~ 215 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQ 215 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 3566788889999999999999999887766665543 2678888999875554
No 387
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.35 E-value=3.5e-06 Score=77.17 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=68.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhcccc--------ccccCcc------------hh--------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASA--------AQLYSPY------------VG-------- 220 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~--------~~~~~~~------------~g-------- 220 (390)
++.+.++..+.|.||+|+|||||+++++.... ..+..+.. +.++... .+
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 86 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSH 86 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHH
Confidence 45678899999999999999999999994321 00000000 0000000 00
Q ss_pred -------------------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHH
Q psy11689 221 -------------------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTA 279 (390)
Q Consensus 221 -------------------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i 279 (390)
...+..+-.+++|...+|.++++||+...++..........+.. ...+.+..+|.+..+
T Consensus 87 ~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~ 166 (213)
T PRK15177 87 FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLI 166 (213)
T ss_pred HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 01122234667888889999999999888888776665554421 234678888887665
Q ss_pred H
Q psy11689 280 D 280 (390)
Q Consensus 280 ~ 280 (390)
.
T Consensus 167 ~ 167 (213)
T PRK15177 167 K 167 (213)
T ss_pred H
Confidence 4
No 388
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.35 E-value=5.3e-06 Score=76.46 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..
T Consensus 122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 3566788889999999999999999888777665543 36788889998765543
No 389
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=2.3e-06 Score=79.55 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTA 279 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i 279 (390)
..+++|...+|.|+++||+.+.+|........+.+. ..+.+.+..+|.+..+
T Consensus 146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (237)
T PRK11614 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQA 200 (237)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 355577788899999999999999988777665543 3367788888886543
No 390
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.34 E-value=1.2e-07 Score=91.52 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc--chhhHH------HH----HHHHHHHHHhcCCeEEEEc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP--YVGEAE------QN----VTQLFHRARLAAPAILFID 244 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~--~~g~~~------~~----i~~~f~~A~~~~p~il~lD 244 (390)
.+++++|.||||||||++++.+|..++.+++.+++...... +.|... .. ..-.+..|. ..+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 46789999999999999999999999999998877655433 333211 00 111334444 356889999
Q ss_pred CCCCCCChhhHHHHHHHhhcC------CCcEEEeccCH-HHHHhcCch
Q psy11689 245 EIERTYNCEYREQTADNAKKP------RIPRTNGGYRE-QTADTANKP 285 (390)
Q Consensus 245 Eid~~l~~r~~~~~~~~~~~~------~~~~i~~~~~~-~~i~~t~~~ 285 (390)
|+++. .+.........+... ........|.. .+++|.|..
T Consensus 142 Ein~a-~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 142 EYDAG-RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred hhhcc-CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 99976 443333332333211 22233334533 357777753
No 391
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=3.1e-06 Score=81.23 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.. +++
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~dr 215 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQ 215 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3566788889999999999999999888776665533 36788999999876543 443
No 392
>PRK09087 hypothetical protein; Validated
Probab=98.33 E-value=4.8e-06 Score=77.01 Aligned_cols=172 Identities=12% Similarity=0.017 Sum_probs=81.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh-HH
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY-RE 256 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~-~~ 256 (390)
...++|+||+|+|||+|+++++...+..+ ++...+.. ..+.... ..+|++||++.+-.... --
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~---~~~l~iDDi~~~~~~~~~lf 107 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAA---EGPVLIEDIDAGGFDETGLF 107 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhh---cCeEEEECCCCCCCCHHHHH
Confidence 34599999999999999999998765443 22221111 1111111 15899999997632211 11
Q ss_pred HHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhH---HHhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCC
Q psy11689 257 QTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK---REYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRG 333 (390)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~---~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~g 333 (390)
.........+...+..++....-.....+++.-.+ ....-..++...+..++......+....++--+..|+++..|
T Consensus 108 ~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 108 HLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 12222233344445444432111111123332111 111111233455555543222223333343445566766542
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689 334 YREYSAQNANTANKPRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 334 fs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
+ -+.+..++.+-...+...+ +.+|...+++..
T Consensus 188 -~--~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l 219 (226)
T PRK09087 188 -S--LFAAQTIVDRLDRLALERK-SRITRALAAEVL 219 (226)
T ss_pred -h--HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 2 4445554545444443433 557766665554
No 393
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=3e-06 Score=82.69 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.+|++||+.+.+|......+.+.+.. .+.+.+.++|.+..+.. +++
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3566788889999999999999999988877665543 36789999999887653 554
No 394
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.33 E-value=4e-06 Score=78.15 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|..+.....+.+.. ...+.+..+|....+.
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 4666888889999999999999999988777665543 2467888888876554
No 395
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.33 E-value=2.9e-06 Score=87.89 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+..+++|....|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.. |++
T Consensus 146 ~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~ 209 (510)
T PRK15439 146 RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADR 209 (510)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 3345777888999999999999999999888777665533 36788899998876543 443
No 396
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3.4e-06 Score=87.81 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=74.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c---------cchhc----------cccccccC------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V---------YRVLA----------ASAAQLYS------------ 216 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~---------~~~~~----------i~~~~~~~------------ 216 (390)
++.+.++..+.|.||+|+|||||+++++... | +.++. ....+.+.
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 418 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAV 418 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHH
Confidence 5677889999999999999999999999431 1 00000 00000000
Q ss_pred ---------------cchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHH
Q psy11689 217 ---------------PYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTA 279 (390)
Q Consensus 217 ---------------~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i 279 (390)
...+ ...+..+..+++|...+|.++++||+.+.+|........+.+.....+.+.++|....+
T Consensus 419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 0000 01233445777888899999999999999999998888887777666888899987554
Q ss_pred H
Q psy11689 280 D 280 (390)
Q Consensus 280 ~ 280 (390)
.
T Consensus 499 ~ 499 (530)
T PRK15064 499 S 499 (530)
T ss_pred H
Confidence 4
No 397
>KOG0062|consensus
Probab=98.32 E-value=2.2e-06 Score=85.67 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=77.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh--hccch-------------------------hc----ccc----ccccC
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH--SVYRV-------------------------LA----ASA----AQLYS 216 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~--~~~~~-------------------------~~----i~~----~~~~~ 216 (390)
++.+..|+..-|+|++|+|||||.++||.. .++++ +. +.. .++..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 566778999999999999999999999951 01111 00 000 00000
Q ss_pred ----c--c----------hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 217 ----P--Y----------VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 217 ----~--~----------~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
+ + .-.+...++..+++|...+|++++|||+...+|-..-......+....+|.+.++|.-..+.
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLN 259 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHH
Confidence 0 0 00122445678889999999999999999999999888888888888889999998765533
No 398
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=3.7e-06 Score=80.67 Aligned_cols=53 Identities=8% Similarity=-0.128 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|.+..+.
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~ 215 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVL 215 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 3556778888999999999999999888776655432 2678889999876544
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.31 E-value=4.5e-06 Score=75.65 Aligned_cols=103 Identities=11% Similarity=0.173 Sum_probs=60.2
Q ss_pred hcCCCCC-ceEEEEcCCCChHHHHHHHHHH-----hhccchh-----ccc-ccccc---------Ccchh---hHHHHHH
Q psy11689 172 RLAIPKP-KGILLYGPPGCAKTSLVRTLAA-----HSVYRVL-----AAS-AAQLY---------SPYVG---EAEQNVT 227 (390)
Q Consensus 172 ~~~~~~~-~~vLl~GppGtGKT~La~aia~-----~~~~~~~-----~i~-~~~~~---------~~~~g---~~~~~i~ 227 (390)
++.+.++ +.++|+||+|+|||||.+.++. +.|..+- .+. ..+.+ ..... ...+.+.
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~ 100 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIA 100 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHH
Confidence 3445666 4699999999999999999982 2231110 111 11111 11111 1112222
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHH----HHhhcCCCcEEEeccCH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTA----DNAKKPRIPRTNGGYRE 276 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~----~~~~~~~~~~i~~~~~~ 276 (390)
.++.. ..+|+++++||+.+.++........ ..+.....+.+..+|..
T Consensus 101 ~i~~~--~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~ 151 (200)
T cd03280 101 RILQH--ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG 151 (200)
T ss_pred HHHHh--CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH
Confidence 33322 4689999999999999988765543 23333456777788754
No 400
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.31 E-value=3.2e-06 Score=86.47 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=74.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc----------c-hhcc--------cccccc------Ccc--------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY----------R-VLAA--------SAAQLY------SPY-------- 218 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~----------~-~~~i--------~~~~~~------~~~-------- 218 (390)
++.+.++..+.|.||+|+|||||+++++..... + .+.. ...+.+ ..+
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~ 123 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI 123 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence 456789999999999999999999999954210 0 0000 000000 000
Q ss_pred -----------------hh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCH
Q psy11689 219 -----------------VG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYRE 276 (390)
Q Consensus 219 -----------------~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~ 276 (390)
.+ ...+..+..+++|....|.++++||+.+.+|........+.+. ..+.+.+..+|.+
T Consensus 124 i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl 203 (549)
T PRK13545 124 IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203 (549)
T ss_pred HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 00 0123334577788899999999999999999988777666553 3367888999998
Q ss_pred HHHHh-cCc
Q psy11689 277 QTADT-ANK 284 (390)
Q Consensus 277 ~~i~~-t~~ 284 (390)
..+.. |++
T Consensus 204 ~~i~~l~Dr 212 (549)
T PRK13545 204 SQVKSFCTK 212 (549)
T ss_pred HHHHHhCCE
Confidence 76543 443
No 401
>PRK06921 hypothetical protein; Provisional
Probab=98.31 E-value=1.1e-06 Score=83.12 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=48.7
Q ss_pred cCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeE
Q psy11689 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240 (390)
Q Consensus 165 ~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~i 240 (390)
.+.+.|....-..+.+++|+||||+|||+|+.++|+++ +..++++...+++...... .......+. .....++
T Consensus 104 ~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~--~~~~~dl 180 (266)
T PRK06921 104 EYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLN--RMKKVEV 180 (266)
T ss_pred HHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHH--HhcCCCE
Confidence 33444443222346789999999999999999999875 4555555554443321111 011111222 2346789
Q ss_pred EEEcCCCC
Q psy11689 241 LFIDEIER 248 (390)
Q Consensus 241 l~lDEid~ 248 (390)
|+|||+..
T Consensus 181 LiIDDl~~ 188 (266)
T PRK06921 181 LFIDDLFK 188 (266)
T ss_pred EEEecccc
Confidence 99999954
No 402
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.31 E-value=3.9e-06 Score=77.41 Aligned_cols=49 Identities=10% Similarity=-0.061 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYRE 276 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~ 276 (390)
..+.+|....|.++++||+.+.+|........+.+.. ...+.+..+|..
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3566778888999999999999999888777665532 356778888875
No 403
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.31 E-value=1.6e-06 Score=73.15 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=25.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHH
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia 199 (390)
+.+.++..+.|.||+|+|||||+++++
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHT
T ss_pred EEEcCCCEEEEEccCCCccccceeeec
Confidence 456789999999999999999999999
No 404
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.31 E-value=5.9e-06 Score=78.98 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=71.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh---------------cccc-------c------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL---------------AASA-------A------ 212 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~---------------~i~~-------~------ 212 (390)
++.+.++..+.|.||+|+|||||+++|+..... .++ .... .
T Consensus 57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~ 136 (282)
T cd03291 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKAC 136 (282)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHh
Confidence 456789999999999999999999999954210 000 0000 0
Q ss_pred cc---cCcc-------------hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEec
Q psy11689 213 QL---YSPY-------------VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGG 273 (390)
Q Consensus 213 ~~---~~~~-------------~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~ 273 (390)
.+ +..+ .-...+..+..+++|...+|.++++||+.+.+|..........+ .....+.+..+
T Consensus 137 ~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiis 216 (282)
T cd03291 137 QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT 216 (282)
T ss_pred CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 00 0000 00123445567888999999999999999999998777655432 12356778888
Q ss_pred cCHHHHH
Q psy11689 274 YREQTAD 280 (390)
Q Consensus 274 ~~~~~i~ 280 (390)
|....+.
T Consensus 217 H~~~~~~ 223 (282)
T cd03291 217 SKMEHLK 223 (282)
T ss_pred CChHHHH
Confidence 8765444
No 405
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.30 E-value=5.9e-06 Score=75.77 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH-----HhhcCCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTAD-----NAKKPRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~-----~~~~~~~~~i~~~~~~~~i~~ 281 (390)
-.+++|...+|.++++||+.+.+|........+ .....+.+.+..+|....+..
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~ 207 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH 207 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh
Confidence 455677778899999999999999987765544 233345788888888755543
No 406
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.30 E-value=4.4e-06 Score=83.03 Aligned_cols=56 Identities=20% Similarity=0.039 Sum_probs=43.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+++|....|.|+++||+.+.+|+.......+.+.. ...+.+.++|.+..+.. +++
T Consensus 174 ~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~Dr 234 (382)
T TIGR03415 174 GLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNR 234 (382)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 556788889999999999999999988777665533 36788999999876533 443
No 407
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.29 E-value=4.9e-06 Score=78.92 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+.
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~ 216 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVE 216 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHH
Confidence 4666888889999999999999999877766555432 2578888999875554
No 408
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.29 E-value=4.4e-06 Score=81.64 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.+|++||+.+.+|......+.+.+.. .+.+.+.++|.+..+.. +++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dr 231 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDK 231 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence 4566788889999999999999999888777665533 36789999999887754 554
No 409
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.29 E-value=5.3e-06 Score=78.11 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+..
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 217 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3556788889999999999999999988777665433 36788889998765553
No 410
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.28 E-value=6.9e-07 Score=75.82 Aligned_cols=70 Identities=33% Similarity=0.371 Sum_probs=42.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhcccccccc------CcchhhHH-HH-HHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY------SPYVGEAE-QN-VTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~------~~~~g~~~-~~-i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
+|+|+||||||||+|++.+|...+.+++.+.++... ..+.-... .. ....+..+.. .+.+++|||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC
Confidence 489999999999999999999999888766654422 22211000 00 0000001111 67999999999753
No 411
>PLN03130 ABC transporter C family member; Provisional
Probab=98.28 E-value=4.1e-06 Score=97.18 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=81.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch---h-------cc-cccccc-------------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV---L-------AA-SAAQLY------------------------- 215 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~---~-------~i-~~~~~~------------------------- 215 (390)
++.+++|+.+.|+||+|||||||++++.++....- + ++ ..+.++
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a 716 (1622)
T PLN03130 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDV 716 (1622)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHH
Confidence 56788999999999999999999999997642100 0 00 000000
Q ss_pred --------------Ccchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEe
Q psy11689 216 --------------SPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNG 272 (390)
Q Consensus 216 --------------~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~ 272 (390)
...+|+ +.|+.+-.+++|...+|.|+++||+.+.+|........+.... ...|.+.+
T Consensus 717 ~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlV 796 (1622)
T PLN03130 717 TALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLV 796 (1622)
T ss_pred hCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEE
Confidence 001121 3466777899999999999999999999999887766544322 46889999
Q ss_pred ccCHHHHHhcCc
Q psy11689 273 GYREQTADTANK 284 (390)
Q Consensus 273 ~~~~~~i~~t~~ 284 (390)
+|++..+..+++
T Consensus 797 TH~l~~l~~aD~ 808 (1622)
T PLN03130 797 TNQLHFLSQVDR 808 (1622)
T ss_pred ECCHhHHHhCCE
Confidence 999988777765
No 412
>PRK08116 hypothetical protein; Validated
Probab=98.28 E-value=2.1e-06 Score=81.44 Aligned_cols=71 Identities=21% Similarity=0.364 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh----HHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE----AEQNVTQLFHRARLAAPAILFIDEIERT 249 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~----~~~~i~~~f~~A~~~~p~il~lDEid~~ 249 (390)
.+.+++|+|++|||||+|+.++|+++ +.+++.++.++++..+... .......++.. ....++|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~--l~~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS--LVNADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH--hcCCCEEEEecccCC
Confidence 34679999999999999999999875 5667777766654432111 11111122222 235679999999653
No 413
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.28 E-value=3.6e-06 Score=83.45 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=103.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc-----cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV-----YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~-----~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
....++||||+|+|||+|++|++++.. ..++++....++..++.....+-.+-|..-+ +-++++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 356699999999999999999997764 2356666666665555554444445666666 668999999999998
Q ss_pred hhhHHHHHH----HhhcCCCcEEEeccCH-HHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCC
Q psy11689 252 CEYREQTAD----NAKKPRIPRTNGGYRE-QTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTAN 323 (390)
Q Consensus 252 ~r~~~~~~~----~~~~~~~~~i~~~~~~-~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vd 323 (390)
+...+.... .+...+...+..+.+. ..+... .+++...+- ..-...|+...+..|+......+....++--
T Consensus 190 k~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~-~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev 268 (408)
T COG0593 190 KERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL-EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV 268 (408)
T ss_pred ChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc-cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 754433322 2233333444444332 222211 122321111 1111234455565554332333333333333
Q ss_pred cchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhh
Q psy11689 324 KPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKP 368 (390)
Q Consensus 324 l~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~ 368 (390)
..-+|++-+ ....+|+.++++....|...++ .+|-+.+.+.
T Consensus 269 ~~~la~~~~---~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~ 309 (408)
T COG0593 269 LEFLAKRLD---RNVRELEGALNRLDAFALFTKR-AITIDLVKEI 309 (408)
T ss_pred HHHHHHHhh---ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHH
Confidence 344554432 2277888888887777766654 5565544443
No 414
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=5.4e-06 Score=79.11 Aligned_cols=53 Identities=15% Similarity=0.022 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~ 209 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVA 209 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHH
Confidence 4566788889999999999999999888776665533 3678888999876554
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.27 E-value=6.3e-06 Score=74.79 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=64.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHH-----hhccchh----c----------cccccccCcch---hhHHHHHHHH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAA-----HSVYRVL----A----------ASAAQLYSPYV---GEAEQNVTQL 229 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~-----~~~~~~~----~----------i~~~~~~~~~~---g~~~~~i~~~ 229 (390)
++.+.+++.++|+||+|+||||++++++. ..|..+. . +...+...... ....+.+..+
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i 102 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEI 102 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHH
Confidence 34456678899999999999999999982 2231110 0 00111111111 1112233333
Q ss_pred HHHHHhcCCeEEEEcCCCCCCChhhHHHHH----HHhhcCCCcEEEeccCHHHHHhc
Q psy11689 230 FHRARLAAPAILFIDEIERTYNCEYREQTA----DNAKKPRIPRTNGGYREQTADTA 282 (390)
Q Consensus 230 f~~A~~~~p~il~lDEid~~l~~r~~~~~~----~~~~~~~~~~i~~~~~~~~i~~t 282 (390)
. +....|.++++||+.+.+++....... ..+.....+.+..+|....+..+
T Consensus 103 ~--~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~ 157 (202)
T cd03243 103 L--SLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLP 157 (202)
T ss_pred H--HhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHh
Confidence 3 334689999999999999987654432 33333466778888875444433
No 416
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.27 E-value=3.4e-06 Score=96.98 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+.+.+|..+...+.+.+... +.+.+.++|++.++..+++
T Consensus 583 GQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~ 648 (1466)
T PTZ00265 583 GQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANT 648 (1466)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCE
Confidence 3555668889999999999999999999999988887777543 5789999999988876665
No 417
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.27 E-value=4.4e-06 Score=85.19 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+.+.++|...+|.+|+.||++..+|.....++.+.+.. .+++.+.++|.+.+++. |++
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCe
Confidence 44556888999999999999999999999998888776644 57899999999998876 454
No 418
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=5.1e-06 Score=86.43 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
+..+..+++|....|.|+++||+.+.+|........+.+...+.+.+.++|....+.
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLN 216 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 344557778888999999999999999999988887777666788899999876654
No 419
>PRK13409 putative ATPase RIL; Provisional
Probab=98.26 E-value=4.6e-06 Score=87.67 Aligned_cols=110 Identities=17% Similarity=0.114 Sum_probs=73.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---ch---hcc-------------cccccc-----------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---RV---LAA-------------SAAQLY----------------- 215 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---~~---~~i-------------~~~~~~----------------- 215 (390)
++.+.++..+.|.||+|+|||||+++++..... .+ +.+ +..+.+
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L 438 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII 438 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence 445678999999999999999999999954210 00 000 000000
Q ss_pred ---------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 216 ---------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 216 ---------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
...+. ++.+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|....+.
T Consensus 439 ~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 439 KPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518 (590)
T ss_pred HHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 00000 12233445777888999999999999999999988877666644 3678899999876554
Q ss_pred h
Q psy11689 281 T 281 (390)
Q Consensus 281 ~ 281 (390)
.
T Consensus 519 ~ 519 (590)
T PRK13409 519 Y 519 (590)
T ss_pred H
Confidence 3
No 420
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=5.4e-06 Score=79.48 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.++++||+.+.+|..........+.. .+.+.+..+|.+..+.. |++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 4666788889999999999999999887766555433 36788899998776543 443
No 421
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.26 E-value=2.8e-06 Score=82.85 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
|..+-+.++|...+|.+|++||+.+.+|..-..++.+.+.. .+++.+.++|.+.++.+
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrA 492 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRA 492 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHH
Confidence 44556788999999999999999999998877777665543 37888999999877765
No 422
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.26 E-value=8e-06 Score=79.95 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=39.0
Q ss_pred CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
|.+|.|.++.|..|......| ...++||.|++|||||+++++++..+
T Consensus 16 f~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 339999999999988776553 34689999999999999999997554
No 423
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.25 E-value=5.6e-06 Score=85.53 Aligned_cols=55 Identities=7% Similarity=-0.098 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHh
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADT 281 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~ 281 (390)
+..+++|....|.++++||+.+.+|........+.+. ..+.+.+..+|.+..+..
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3466788889999999999999999988877754443 346788899998876543
No 424
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.25 E-value=5.8e-06 Score=86.56 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT 281 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 281 (390)
+..+..+++|...+|.++++||+.+.+|........+.+.....+.+.++|....+..
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~ 225 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDN 225 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 4445677888899999999999999999999888877776666688889998766543
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=6e-06 Score=87.74 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=76.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-------c----chhccccc---ccc---------Ccc-hh-------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-------Y----RVLAASAA---QLY---------SPY-VG------- 220 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-------~----~~~~i~~~---~~~---------~~~-~g------- 220 (390)
++.+.++..+.|.||+|+|||||+++|+.... + .+-++.-. .+. ..+ ..
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 411 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLR 411 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHH
Confidence 45678899999999999999999999995421 0 00000000 000 000 00
Q ss_pred --------------------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 221 --------------------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 221 --------------------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
.+.+..+..++++....|.++++||+++.+|..+.....+.+.....+.+.++|....+.
T Consensus 412 ~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~ 491 (638)
T PRK10636 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLR 491 (638)
T ss_pred HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 011223346677888899999999999999999988888877776668889999887665
Q ss_pred h-cCc
Q psy11689 281 T-ANK 284 (390)
Q Consensus 281 ~-t~~ 284 (390)
. |++
T Consensus 492 ~~~d~ 496 (638)
T PRK10636 492 STTDD 496 (638)
T ss_pred HhCCE
Confidence 4 443
No 426
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.25 E-value=5.2e-06 Score=85.54 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|....|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 144 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~ 199 (490)
T PRK10938 144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIP 199 (490)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 4666888889999999999999999988777665533 3578888999886654
No 427
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.25 E-value=8.2e-06 Score=75.88 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHHHHh-cCc
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+.-++.+..+.|.|+|+||++--+|--....+.+.+ ...+.|.+..+|.+.-+.+ |++
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh
Confidence 33445567889999999999999999876555554433 3346788888888766665 444
No 428
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.25 E-value=7.2e-06 Score=75.91 Aligned_cols=54 Identities=11% Similarity=-0.024 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.|+++||+.+.+|........+.+.. .+.+.+..+|++..+..
T Consensus 134 v~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 191 (230)
T TIGR02770 134 VMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVAR 191 (230)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 4666788889999999999999999887766655533 25678888998765543
No 429
>PHA02244 ATPase-like protein
Probab=98.24 E-value=2e-06 Score=84.03 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhccccc----cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA----QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~----~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
.+..++|+||||||||+|++++|...+.+++.++.. .+.. +......-...-|-.|. ....+++|||++.+-
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~ 193 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASI 193 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCC
Confidence 456799999999999999999999999998877632 1111 11111110111233333 456899999999865
No 430
>KOG0740|consensus
Probab=98.24 E-value=2.5e-07 Score=91.68 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=58.9
Q ss_pred eeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc-c----cCCcccchHHHHHHh
Q psy11689 11 TVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF-T----KLNEEVELSENVQRE 82 (390)
Q Consensus 11 ~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~-~----~~~~~v~l~~~la~~ 82 (390)
+|||+|+|||+..+|+|++| ||. +|++|+ .++|..++.- + ..-.+-++ +.||+.
T Consensus 290 rvlvigaTN~P~e~Dea~~R----------------rf~kr~yiplPd-~etr~~~~~~ll~~~~~~l~~~d~-~~l~~~ 351 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARR----------------RFVKRLYIPLPD-YETRSLLWKQLLKEQPNGLSDLDI-SLLAKV 351 (428)
T ss_pred eEEEEecCCCchHHHHHHHH----------------HhhceeeecCCC-HHHHHHHHHHHHHhCCCCccHHHH-HHHHHH
Confidence 89999999999999999998 677 455555 7778777754 1 12234566 779999
Q ss_pred hcCCccccccccccccchh
Q psy11689 83 EEGIAGENLQRGGGEEGIE 101 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~ 101 (390)
|+||+|.|+.++|.++++.
T Consensus 352 Tegysgsdi~~l~kea~~~ 370 (428)
T KOG0740|consen 352 TEGYSGSDITALCKEAAMG 370 (428)
T ss_pred hcCcccccHHHHHHHhhcC
Confidence 9999999999999999885
No 431
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.24 E-value=8e-06 Score=76.04 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNY 209 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHh
Confidence 4666778888999999999999999888777665543 35778888898765543
No 432
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.24 E-value=7.3e-06 Score=76.83 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=38.5
Q ss_pred HHHHHHhc-------CCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLA-------APAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~-------~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~ 280 (390)
.+++|... +|.++++||+.+.+|........+.+. ....+.+..+|....+.
T Consensus 136 ~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~ 197 (248)
T PRK03695 136 RLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTL 197 (248)
T ss_pred HHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 55566665 679999999999999988776665553 23578888889875443
No 433
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=3.7e-06 Score=78.36 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTAD 280 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~ 280 (390)
++.+.+..+|...+|.++++||+-+.+|-....+.+..+.++ .+..+.++|.+.-++
T Consensus 133 EkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193 (352)
T ss_pred hhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence 445568889999999999999999999987777777766553 678888999875544
No 434
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=9.8e-06 Score=75.77 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~ 280 (390)
+..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|+...+.
T Consensus 150 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 150 RLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 34666788889999999999999999887776665543 3677888888876543
No 435
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=6.6e-06 Score=80.37 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+-.+++|...+|.|+++||+.+.+|........+.+.. ...+.+.++|++..+.. +++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Dr 293 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDE 293 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 34677888889999999999999999887776555532 24788999999877665 554
No 436
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.23 E-value=4.9e-06 Score=70.82 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChh----hHHHHHHHhhcCCCcEEEeccCH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCE----YREQTADNAKKPRIPRTNGGYRE 276 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r----~~~~~~~~~~~~~~~~i~~~~~~ 276 (390)
+.-+..+.++...+|..+++||+.+-+|.. +.+.+.......++..+.++|..
T Consensus 139 QrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 139 QRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred hHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 444557778899999999999999988864 34445556677788888888864
No 437
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.23 E-value=7.9e-06 Score=76.67 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=40.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
.+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 211 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAR 211 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 555778889999999999999999887776665532 2678888999875543
No 438
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.5e-06 Score=89.26 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=82.4
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLA 208 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~ 208 (390)
...+++.++|-++-...+.+++.. +...+-+|+|+||+|||+++..+|... +..++.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 355666888888888777777754 345667899999999999999999553 234455
Q ss_pred ccccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH
Q psy11689 209 ASAAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR 255 (390)
Q Consensus 209 i~~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~ 255 (390)
++...+. .+|-|+.|+.++.+........+.|+||||++.+.+....
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~ 280 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT 280 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc
Confidence 6665555 4578999999999999999999999999999999987653
No 439
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.22 E-value=3.6e-06 Score=72.39 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=47.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhhc---cchhccccccccC----------------------cch--hhHHHHHHHHHHHH
Q psy11689 181 ILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYS----------------------PYV--GEAEQNVTQLFHRA 233 (390)
Q Consensus 181 vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~----------------------~~~--g~~~~~i~~~f~~A 233 (390)
++|+||||+|||+++..++.... .+++.++...... .+. ..........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 68999999999999999987652 3444333321111 000 11112223456677
Q ss_pred HhcCCeEEEEcCCCCCCChh
Q psy11689 234 RLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 234 ~~~~p~il~lDEid~~l~~r 253 (390)
....|.++++||+..+++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~ 101 (165)
T cd01120 82 ERGGDDLIILDELTRLVRAL 101 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHH
Confidence 78899999999999877543
No 440
>PLN03073 ABC transporter F family; Provisional
Probab=98.22 E-value=7.3e-06 Score=87.91 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=74.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cc--------hh--------ccccccc------c---------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YR--------VL--------AASAAQL------Y--------- 215 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~--------~~--------~i~~~~~------~--------- 215 (390)
++.+.++..+.|.||+|+|||||+++++.... +. ++ .+..... .
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 608 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 608 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHH
Confidence 56678899999999999999999999995421 00 00 0000000 0
Q ss_pred -------------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 216 -------------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 216 -------------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
..... .+.+..+..+++|....|.++++||+.+.+|........+.+.....+.+.++|....+.
T Consensus 609 ~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 609 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS 688 (718)
T ss_pred HHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 00000 123444567888999999999999999999999888777776654457888999875554
Q ss_pred h
Q psy11689 281 T 281 (390)
Q Consensus 281 ~ 281 (390)
.
T Consensus 689 ~ 689 (718)
T PLN03073 689 G 689 (718)
T ss_pred H
Confidence 3
No 441
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.22 E-value=1.3e-05 Score=72.47 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=34.5
Q ss_pred cCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHh
Q psy11689 236 AAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADT 281 (390)
Q Consensus 236 ~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~ 281 (390)
..|.++++||+++.++........+.+... ..+.+.++|++..+..
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~ 181 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA 181 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence 456899999999999998887776655432 4677888888755443
No 442
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.22 E-value=1.7e-06 Score=94.27 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=63.2
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccC-----
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYS----- 216 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~----- 216 (390)
.|.|.+...+.+.+.+...... +.. .-+|-..+||+||||+|||.+|+++|..+. ..++.++++++..
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~g---l~~-~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAG---LED-PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 4566666666666666432110 000 012223589999999999999999998872 3455666554321
Q ss_pred -------cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH
Q psy11689 217 -------PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTAD 260 (390)
Q Consensus 217 -------~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~ 260 (390)
+|+|..+.. .+....+..+.+||+|||++.. ++...+...+
T Consensus 643 ~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka-~~~v~~~Llq 690 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA-HPDVLELFYQ 690 (852)
T ss_pred cccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc-CHHHHHHHHH
Confidence 233332211 1233445577899999999964 3333333333
No 443
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.22 E-value=1.2e-06 Score=84.49 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=48.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHH-HHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAE-QNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~-~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
.+.+++|+||+|+|||+|+.|+|+++ |.++..+..++++........ ......+.. ....++|+|||+..--
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~--l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA--VKEAPVLMLDDIGAEQ 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH--hcCCCEEEEecCCCcc
Confidence 56799999999999999999999886 556666666655433221110 112223333 3567899999998653
No 444
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.21 E-value=1e-05 Score=74.47 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=40.7
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
.+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRE 213 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 455677788999999999999999888777665533 3678888999876554
No 445
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=5.7e-06 Score=75.09 Aligned_cols=93 Identities=13% Similarity=0.192 Sum_probs=62.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cchhcccc--------------------ccccCc---------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YRVLAASA--------------------AQLYSP--------- 217 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~~~~i~~--------------------~~~~~~--------- 217 (390)
++.+.++..+.|.||+|+|||||++.++.... ---+.++. ..++..
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 106 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDF 106 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhh
Confidence 45678999999999999999999999996532 00000000 000000
Q ss_pred --------chh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689 218 --------YVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 218 --------~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
+.. ...+..+..+++|...+|.++++||+.+.+|........+.+..
T Consensus 107 ~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 163 (202)
T cd03233 107 ALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT 163 (202)
T ss_pred hhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 000 11233445788899999999999999999999888777665543
No 446
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.21 E-value=1e-06 Score=82.90 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=49.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHH-HHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQ-NVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~-~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
.+.+++|+||||+|||+|+.|+++++ |..+..+..++++...-..-.. ....-+.+ .....++|||||+...-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~-~l~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLR-ELKKVDLLIIDDIGYEPFS 182 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHH-HhhcCCEEEEecccCccCC
Confidence 78899999999999999999999775 4666777777766443221110 00001111 1355689999999876443
No 447
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.21 E-value=7.3e-06 Score=71.72 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=60.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccch------------hcccccc----cc-CcchhhHHHHHHHHHHHHHh----
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV------------LAASAAQ----LY-SPYVGEAEQNVTQLFHRARL---- 235 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~------------~~i~~~~----~~-~~~~g~~~~~i~~~f~~A~~---- 235 (390)
.+...+++||+|+|||+++++++-..+... ..+...+ .. ....+. +..+..+.++..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G--~~~~~~la~~L~~~~~ 97 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGG--EKELSALALILALASL 97 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeecccc--HHHHHHHHHHHHhcCC
Confidence 456899999999999999999873322111 0000000 00 111112 222223334333
Q ss_pred cCCeEEEEcCCCCCCChhhHHHHHHHhhcC---CCcEEEeccCHHHHH
Q psy11689 236 AAPAILFIDEIERTYNCEYREQTADNAKKP---RIPRTNGGYREQTAD 280 (390)
Q Consensus 236 ~~p~il~lDEid~~l~~r~~~~~~~~~~~~---~~~~i~~~~~~~~i~ 280 (390)
..|+++++||+.+-++..........+... ..+.+..+|......
T Consensus 98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~ 145 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE 145 (162)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 378999999999999998776665544322 456677788765443
No 448
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.21 E-value=6e-06 Score=78.67 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+++.|....|.+|+-||+++.+|.....++.+.+.. .+.+.+.++|.+.+++. +++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDr 223 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADR 223 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcce
Confidence 3556788889999999999999999888877665533 57888999999988775 554
No 449
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.20 E-value=1e-05 Score=75.65 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+... ..+.+..+|++..+.
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~ 207 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAA 207 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHH
Confidence 45667788889999999999999998887776655432 367888889876543
No 450
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.20 E-value=1.3e-07 Score=78.74 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=49.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhccccc-cccC-cchhh-----HHHH----HHHHHHHHHhcCCeEEEEcCCCC
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA-QLYS-PYVGE-----AEQN----VTQLFHRARLAAPAILFIDEIER 248 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~-~~~~-~~~g~-----~~~~----i~~~f~~A~~~~p~il~lDEid~ 248 (390)
+|||.|+||+|||++++++|+..+..|..+.+. ++.. ...|. .... -.-+| ..|+++||+-+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999888777653 3221 11110 0000 01122 24999999988
Q ss_pred CCChhhHHHHHHHhhcCCCc----EEEeccCHHHHHhcCch
Q psy11689 249 TYNCEYREQTADNAKKPRIP----RTNGGYREQTADTANKP 285 (390)
Q Consensus 249 ~l~~r~~~~~~~~~~~~~~~----~i~~~~~~~~i~~t~~~ 285 (390)
. .++......+.+....++ .....+...+++|-|..
T Consensus 74 a-ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 74 A-PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPV 113 (131)
T ss_dssp S--HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT
T ss_pred C-CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcc
Confidence 5 455555555665554444 22222334445555543
No 451
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=1.1e-05 Score=75.45 Aligned_cols=53 Identities=17% Similarity=0.045 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|++..+.
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 209 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAA 209 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3556777888999999999999999988777665543 2467788888876543
No 452
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.20 E-value=1e-05 Score=83.56 Aligned_cols=57 Identities=11% Similarity=-0.066 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHh
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADT 281 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~ 281 (390)
..+..+++|...+|.|+++||+.+.+|........+.+. ..+.+.+.++|.+..+..
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 334577788899999999999999999998877765554 346788999999876543
No 453
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.20 E-value=2.3e-07 Score=94.91 Aligned_cols=82 Identities=16% Similarity=0.085 Sum_probs=61.9
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCccccccccCCcccchHHHHHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPFTKLNEEVELSENVQR 81 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~~~~~~~v~l~~~la~ 81 (390)
|.+.-+++|++||+||+++.+|+||+| ||||+ .|++|. +.++|++|+.. .+..++.+ ..-+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlR--------------pGRfD~~I~~~~Pd~e~r~~Il~~-~l~~~l~l-~~~l~ 389 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILR--------------PGRLDVKIRIERPDAEAAADIFSK-YLTDSLPL-DADLA 389 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcC--------------ccccceEEEeCCCCHHHHHHHHHH-HhhccCCc-hHHHH
Confidence 555556899999999999999999999 99999 677777 46788888875 12223333 22345
Q ss_pred hhcCCccccccccccccchh
Q psy11689 82 EEEGIAGENLQRGGGEEGIE 101 (390)
Q Consensus 82 ~t~G~~g~~l~~~~~ea~~~ 101 (390)
.+.|++++++.+++.++.-.
T Consensus 390 ~~~g~~~a~~~al~~~av~~ 409 (512)
T TIGR03689 390 EFDGDREATAAALIQRAVDH 409 (512)
T ss_pred HhcCCCHHHHHHHHHHHHHH
Confidence 57999999999998876543
No 454
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.20 E-value=4.9e-06 Score=69.47 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=43.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh--------ccchhccccccccCc--c------------hh-hHHH-HHHHHHHH
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS--------VYRVLAASAAQLYSP--Y------------VG-EAEQ-NVTQLFHR 232 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~--------~~~~~~i~~~~~~~~--~------------~g-~~~~-~i~~~f~~ 232 (390)
..+.++++||||+|||++++.++... ..+++.+.++..... + .. .... ....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45679999999999999999999876 455555555433310 0 01 1222 23333333
Q ss_pred HHhcCCeEEEEcCCCCCC
Q psy11689 233 ARLAAPAILFIDEIERTY 250 (390)
Q Consensus 233 A~~~~p~il~lDEid~~l 250 (390)
.......+|+|||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHCTEEEEEEETTHHHH
T ss_pred HHhcCCeEEEEeChHhcC
Confidence 444444599999999953
No 455
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.19 E-value=1.1e-05 Score=75.75 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|++..+.
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~ 205 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVA 205 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 34667888889999999999999999887766555533 2578888899876553
No 456
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.19 E-value=9.1e-06 Score=71.22 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHH---HHhhcCCCcEEEeccCHH
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTA---DNAKKPRIPRTNGGYREQ 277 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~---~~~~~~~~~~i~~~~~~~ 277 (390)
.+..+..+++|...+|.++++||+++.+|+.--.+.. +.+...+.|.+..+|.+.
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 3556678899999999999999999999998766554 444556888899998753
No 457
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.19 E-value=9.2e-06 Score=73.17 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH----HhhcCCCcEEEeccCHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTAD----NAKKPRIPRTNGGYREQT 278 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~----~~~~~~~~~i~~~~~~~~ 278 (390)
.+..|..++|.|+++||=.+.+|++.+..+++ .+....++.+.++|.+..
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~ 211 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED 211 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH
Confidence 44467788999999999999999998876654 446678999999998643
No 458
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.18 E-value=2.9e-06 Score=82.35 Aligned_cols=80 Identities=30% Similarity=0.395 Sum_probs=54.8
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEA 222 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~ 222 (390)
.+.|...+.+..--++.+- +-+--.++++||.||||||||+||-++|.++| .||..++++++++.-...+
T Consensus 25 GlVGQ~~AReAagiiv~mI--------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKT 96 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMI--------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKT 96 (398)
T ss_dssp TEES-HHHHHHHHHHHHHH--------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HH
T ss_pred cccChHHHHHHHHHHHHHH--------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCch
Confidence 6788888877766655541 11224689999999999999999999999998 8999999999987665554
Q ss_pred HHHHHHHHHHH
Q psy11689 223 EQNVTQLFHRA 233 (390)
Q Consensus 223 ~~~i~~~f~~A 233 (390)
| .+.+.|.+|
T Consensus 97 E-~L~qa~Rra 106 (398)
T PF06068_consen 97 E-ALTQAFRRA 106 (398)
T ss_dssp H-HHHHHHHCS
T ss_pred H-HHHHHHHHh
Confidence 4 345566643
No 459
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.1e-05 Score=83.21 Aligned_cols=54 Identities=7% Similarity=-0.100 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~ 280 (390)
+..+++|....|.++++||+.+.+|........+.+. ..+.+.+..+|+...+.
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~ 198 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIF 198 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 3467788888999999999999999988877755553 34678889999987654
No 460
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.18 E-value=9.6e-07 Score=78.62 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=45.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH-HHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA-EQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
..+.+++|+||||+|||+||.+++.++ |.++.+++.++++....... .......+.. ...+++|+|||+...-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~--l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR--LKRVDLLILDDLGYEP 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH--HHTSSCEEEETCTSS-
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc--cccccEecccccceee
Confidence 357899999999999999999998654 56666677666654322110 0111223333 3356899999997643
No 461
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1e-05 Score=85.77 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|....|.+|++||+.+.+|........+.+.. .+.+.+.++|.+..+.. +++
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dr 533 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHR 533 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4666788889999999999999999988877766632 36889999999876654 443
No 462
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.18 E-value=1.1e-05 Score=84.28 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=73.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c-c--------chhcc---------cccc----------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V-Y--------RVLAA---------SAAQ---------------- 213 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~-~--------~~~~i---------~~~~---------------- 213 (390)
++.+.++..+.|.||+|+|||||+++++... | + .++.- +..+
T Consensus 342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 421 (552)
T TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV 421 (552)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchH
Confidence 5567889999999999999999999998432 1 0 00000 0000
Q ss_pred ----ccCc----------chh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHH
Q psy11689 214 ----LYSP----------YVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQ 277 (390)
Q Consensus 214 ----~~~~----------~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~ 277 (390)
++.. .++ +..+..+..+++|....|.++++||+.+.+|........+.+.....+.+.++|...
T Consensus 422 ~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~ 501 (552)
T TIGR03719 422 PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRW 501 (552)
T ss_pred HHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 0000 000 012334457778889999999999999999999998888877776557788888765
Q ss_pred HHH
Q psy11689 278 TAD 280 (390)
Q Consensus 278 ~i~ 280 (390)
.+.
T Consensus 502 ~~~ 504 (552)
T TIGR03719 502 FLD 504 (552)
T ss_pred HHH
Confidence 443
No 463
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.17 E-value=3.2e-06 Score=92.24 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=65.6
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCc----
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSP---- 217 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~---- 217 (390)
.|.|.+.+.+.+...+...... +.. .-+|...+||+||+|+|||+||+++|..+. .+++.++.+++...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~g---l~~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVG---LKN-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhc---ccC-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 4667777777776666432110 000 112234589999999999999999998762 45666666554321
Q ss_pred --------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 218 --------YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 218 --------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
|+|..+ ...+....+..+.+||+|||+|.+ .+...+...+.+
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-~~~v~~~Llq~l 635 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-HPDIFNLLLQIL 635 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-CHHHHHHHHHHh
Confidence 222211 123444455566689999999975 444444444433
No 464
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=1.1e-05 Score=83.54 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+++|....|.++++||+.+.+|........+.+.. .+.+.+.++|.+..+..
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~ 208 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKA 208 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 4666888889999999999999999888777655533 36788899999876543
No 465
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.3e-05 Score=75.35 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=39.8
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~ 280 (390)
.+.+|...+|.++++||+.+.+|........+.+... ..+.+..+|....+.
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~ 213 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAG 213 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 5557777889999999999999998887776655432 467788888876543
No 466
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.16 E-value=1.3e-05 Score=83.91 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=73.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c---c------chhc-----c----cccccc--------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V---Y------RVLA-----A----SAAQLY-------------- 215 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~---~------~~~~-----i----~~~~~~-------------- 215 (390)
++.+.++..+.|.||+|+|||||+++++... | + .++. + +..+.+
T Consensus 344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 423 (556)
T PRK11819 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREI 423 (556)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHH
Confidence 4567889999999999999999999999432 1 0 0000 0 000000
Q ss_pred ----------------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHH
Q psy11689 216 ----------------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQ 277 (390)
Q Consensus 216 ----------------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~ 277 (390)
....+ .+.+..+..+++|....|.++++||+.+.+|........+.+.....+.+.++|...
T Consensus 424 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~ 503 (556)
T PRK11819 424 PSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRW 503 (556)
T ss_pred HHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 00000 012334457778888999999999999999999988888877666557788888764
Q ss_pred HHH
Q psy11689 278 TAD 280 (390)
Q Consensus 278 ~i~ 280 (390)
.+.
T Consensus 504 ~~~ 506 (556)
T PRK11819 504 FLD 506 (556)
T ss_pred HHH
Confidence 433
No 467
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.16 E-value=8.7e-06 Score=79.45 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+.. +++
T Consensus 108 RvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~ 170 (325)
T TIGR01187 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDR 170 (325)
T ss_pred HHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 34666888889999999999999999888777665533 36788999999866543 443
No 468
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.15 E-value=1.2e-05 Score=85.54 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT 281 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 281 (390)
..+..+++|....|.|+++||+.+.+|........+.+.....+.+.++|....+..
T Consensus 162 kqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~ 218 (635)
T PRK11147 162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRN 218 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 344577788889999999999999999999888888777766788889998765543
No 469
>PLN03073 ABC transporter F family; Provisional
Probab=98.15 E-value=8.5e-06 Score=87.42 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT 281 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 281 (390)
.+..+++|....|.++++||+...+|..........+.....+.+.++|....+..
T Consensus 351 ~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~ 406 (718)
T PLN03073 351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT 406 (718)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 34467788888999999999999999999988888887777888999998776654
No 470
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.15 E-value=1.3e-05 Score=75.43 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.|+++||+.+.+|........+.+.. .+.+.+..+|+...+.
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 3666788889999999999999999888777665532 2678888999876554
No 471
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=1.4e-05 Score=77.85 Aligned_cols=57 Identities=11% Similarity=-0.055 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH-hcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD-TANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~-~t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|++..+. .+++
T Consensus 185 vaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 185 VAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 4666888889999999999999999988877665532 3678899999987554 3554
No 472
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=1.5e-05 Score=77.99 Aligned_cols=57 Identities=16% Similarity=0.033 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.+|++||+.+.+|......+.+.+.. .+.+.+.++|.+..+.. +++
T Consensus 167 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 167 VMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADK 228 (330)
T ss_pred HHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 3566788888999999999999999888777665543 36889999999887754 554
No 473
>PF13173 AAA_14: AAA domain
Probab=98.15 E-value=3.1e-06 Score=71.01 Aligned_cols=72 Identities=25% Similarity=0.347 Sum_probs=46.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
.+.++|+||.|+||||+++.++.... -.+++++..+......... + +.+.+.......+.+|||||+..+-+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhhcc
Confidence 45689999999999999999998865 5566666544322111100 0 22333333223678999999998754
No 474
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.1e-05 Score=71.55 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=32.5
Q ss_pred HHhcCCeEEEEcCCCCCCChhhHHHH---HHHhhcCCCcEEEeccCH
Q psy11689 233 ARLAAPAILFIDEIERTYNCEYREQT---ADNAKKPRIPRTNGGYRE 276 (390)
Q Consensus 233 A~~~~p~il~lDEid~~l~~r~~~~~---~~~~~~~~~~~i~~~~~~ 276 (390)
+....|.+.+|||+|+-+|-..-..+ ...+.......+.++|..
T Consensus 158 ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~ 204 (251)
T COG0396 158 LLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204 (251)
T ss_pred HHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 34578999999999999997654433 345566677788888853
No 475
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.15 E-value=1.3e-05 Score=85.18 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=75.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c---------cchhcccccccc------------------C----
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V---------YRVLAASAAQLY------------------S---- 216 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~---------~~~~~i~~~~~~------------------~---- 216 (390)
++.+.++..+.|.||+|+|||||+++++... | +.++.-....+. .
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 418 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR 418 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHH
Confidence 5567889999999999999999999999542 1 000000000000 0
Q ss_pred -------c--chh----------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHH
Q psy11689 217 -------P--YVG----------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQ 277 (390)
Q Consensus 217 -------~--~~g----------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~ 277 (390)
. +.+ .+.+..+..+++|...+|.++++||+.+.+|..+.....+.+.....+.+.++|...
T Consensus 419 ~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~ 498 (635)
T PRK11147 419 HVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQ 498 (635)
T ss_pred HHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 0 000 012333456778888899999999999999999988887777766668899999876
Q ss_pred HHHh
Q psy11689 278 TADT 281 (390)
Q Consensus 278 ~i~~ 281 (390)
.+..
T Consensus 499 ~~~~ 502 (635)
T PRK11147 499 FVDN 502 (635)
T ss_pred HHHH
Confidence 6543
No 476
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.14 E-value=1.6e-06 Score=84.77 Aligned_cols=84 Identities=29% Similarity=0.370 Sum_probs=55.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc--hhhHHHHH----H--------HHHHHHHhcCCeEE
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY--VGEAEQNV----T--------QLFHRARLAAPAIL 241 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~--~g~~~~~i----~--------~~f~~A~~~~p~il 241 (390)
..++++||.||||||||+|++.+|...+.+++.+.+...+... .|...-.. . -+|.... .|+
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~il 116 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VIL 116 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEE
Confidence 3678899999999999999999999999999988876443221 11111000 0 0111111 499
Q ss_pred EEcCCCCCCChhhHHHHHHHhhc
Q psy11689 242 FIDEIERTYNCEYREQTADNAKK 264 (390)
Q Consensus 242 ~lDEid~~l~~r~~~~~~~~~~~ 264 (390)
++|||.+.- +...+.....+..
T Consensus 117 l~DEInra~-p~~q~aLl~~l~e 138 (329)
T COG0714 117 LLDEINRAP-PEVQNALLEALEE 138 (329)
T ss_pred EEeccccCC-HHHHHHHHHHHhC
Confidence 999999865 5555555555544
No 477
>KOG0064|consensus
Probab=98.14 E-value=3.6e-06 Score=84.40 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHH
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQT 278 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~ 278 (390)
.+-.+++...++|...++||.++.....-+..+.+.....+++.+.++||+..
T Consensus 619 QR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpsl 671 (728)
T KOG0064|consen 619 QRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSL 671 (728)
T ss_pred HHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccH
Confidence 34567788899999999999999999999999999999999999999998643
No 478
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.3e-05 Score=83.10 Aligned_cols=55 Identities=4% Similarity=-0.072 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
+..+++|....|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 34667888899999999999999999988777655433 36788899999876543
No 479
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.14 E-value=1.6e-05 Score=74.34 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT 281 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~ 281 (390)
.+..+++|....|.++++||+.+.+|........+.+ .....+.+..+|....+..
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 3456778888899999999999999998887776543 3335778888888655443
No 480
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.13 E-value=1.3e-05 Score=83.83 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT 281 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 281 (390)
+..+..+++|....|.++++||+.+.+|........+.+.....+.+.++|....+..
T Consensus 166 qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDN 223 (552)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 3445577788889999999999999999999888877776666688889998766554
No 481
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.13 E-value=1.4e-05 Score=78.01 Aligned_cols=48 Identities=27% Similarity=0.333 Sum_probs=38.9
Q ss_pred CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.|..|.|.+.+|..+.-.+..| ...+++|.|+||+|||||+++++...
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3558999999998876655432 35789999999999999999999665
No 482
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.8e-05 Score=74.63 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=39.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTA 279 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i 279 (390)
.+.+|...+|.++++||+.+.+|........+.+.. ...+.+..+|+...+
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~ 215 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV 215 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHH
Confidence 444667778999999999999999887776665533 247888888887655
No 483
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.13 E-value=1.7e-05 Score=74.92 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=40.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA 279 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i 279 (390)
.+.+|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~ 216 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA 216 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 555788889999999999999999988777666543 257888888987544
No 484
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=1e-05 Score=78.18 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH-hcCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD-TANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~-~t~~ 284 (390)
..+++|...+|.++++||+.+.+|........+.+. ..+.+.+.++|.+..+. .+++
T Consensus 174 valA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 466678888999999999999999988777665553 34688899999976554 3443
No 485
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.12 E-value=1.3e-05 Score=92.97 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh---------------cc-------------ccc
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL---------------AA-------------SAA 212 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~---------------~i-------------~~~ 212 (390)
++.+++|+.+.+.||+|+|||||+++++++... .++ .. ...
T Consensus 658 sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~ 737 (1522)
T TIGR00957 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEAC 737 (1522)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHh
Confidence 566789999999999999999999999954210 000 00 000
Q ss_pred cc---cC-------cchh------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc-----CCCcEEE
Q psy11689 213 QL---YS-------PYVG------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK-----PRIPRTN 271 (390)
Q Consensus 213 ~~---~~-------~~~g------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~-----~~~~~i~ 271 (390)
.+ +. ...| .+.|+.+-.+++|...+|.|+++||+.+.+|........+.+.. ...+.+.
T Consensus 738 ~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIl 817 (1522)
T TIGR00957 738 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRIL 817 (1522)
T ss_pred CCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEE
Confidence 00 00 0011 13456677889999999999999999999999998888777642 3578899
Q ss_pred eccCHHHHHhcCc
Q psy11689 272 GGYREQTADTANK 284 (390)
Q Consensus 272 ~~~~~~~i~~t~~ 284 (390)
++|++..+..+++
T Consensus 818 vTH~~~~l~~~D~ 830 (1522)
T TIGR00957 818 VTHGISYLPQVDV 830 (1522)
T ss_pred EeCChhhhhhCCE
Confidence 9999887766654
No 486
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.12 E-value=1.9e-05 Score=74.04 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
+..+++|....|.|+++||+.+.+|..+.....+.+.. .+.+.+..+|....+.
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~ 215 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLD 215 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 34566778888999999999999999988777665532 3577888888865544
No 487
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.11 E-value=1.8e-05 Score=72.96 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=39.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~ 280 (390)
.+++|...+|.++++||+.+.+|........+.+... ..+.+..+|....+.
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 204 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAA 204 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHH
Confidence 4456777789999999999999998887776655432 267788888865443
No 488
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.11 E-value=1.7e-05 Score=81.82 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=77.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-------------chhcccccccc---------Ccch----------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-------------RVLAASAAQLY---------SPYV---------- 219 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-------------~~~~i~~~~~~---------~~~~---------- 219 (390)
++.+.++..|.|.||+|+|||||++.++...+. -++.-...++. ..+.
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~ 421 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRA 421 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHH
Confidence 567789999999999999999999999644320 00100000000 0000
Q ss_pred ------------------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 220 ------------------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 220 ------------------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
=++.++.+..|+.....+|.+++|||++.-+|-.+.......+..-.-+.+.++|....+.
T Consensus 422 ~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLD 500 (530)
T ss_pred HHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 0123444567888888999999999999999999999888888888889999999754443
No 489
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.11 E-value=2e-05 Score=73.95 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|....+.
T Consensus 157 v~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~ 213 (253)
T TIGR02323 157 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR 213 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4666788889999999999999999888777665532 3678888999876554
No 490
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=2e-05 Score=73.82 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=40.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHh
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADT 281 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~ 281 (390)
.+.+|...+|.++++||+.+.+|........+.+... ..+.+..+|.+..+..
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 211 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR 211 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHh
Confidence 5557777889999999999999998887766655432 4677888898765443
No 491
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.11 E-value=1.9e-05 Score=74.04 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. ...+.+..+|++..+.
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~ 212 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAA 212 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHH
Confidence 3556777888999999999999999888777665543 2467788888875553
No 492
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.11 E-value=2.3e-05 Score=80.88 Aligned_cols=58 Identities=21% Similarity=0.091 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
.++.+..+++|...+|++++|||++..+|-..-......+....-+.+.++|.-..+.
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd 214 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLD 214 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHH
Confidence 3566778899999999999999999999999988888888666558899999754443
No 493
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=2e-05 Score=83.77 Aligned_cols=56 Identities=11% Similarity=-0.023 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
..+..+++|....|.|++|||+.+.+|........+.+.....+.+.++|....+.
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~ 210 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLD 210 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 34456778888899999999999999999888887777776778889999876654
No 494
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.10 E-value=2.4e-05 Score=71.21 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYRE 276 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~ 276 (390)
.++.+|...+|.+++|||+..-+.+.--.++.+.+.. ..++.+.+..+.
T Consensus 145 LAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~ 197 (237)
T COG0410 145 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA 197 (237)
T ss_pred HHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence 4677899999999999999999998877776665533 245666666554
No 495
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.10 E-value=2.3e-05 Score=70.11 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=55.6
Q ss_pred EEEEcCCCChHHHHHHHHH-----Hhhccch---------h-----ccccccccCcchhhHHHHHHHHHHHHHh--cCCe
Q psy11689 181 ILLYGPPGCAKTSLVRTLA-----AHSVYRV---------L-----AASAAQLYSPYVGEAEQNVTQLFHRARL--AAPA 239 (390)
Q Consensus 181 vLl~GppGtGKT~La~aia-----~~~~~~~---------~-----~i~~~~~~~~~~g~~~~~i~~~f~~A~~--~~p~ 239 (390)
++|+||+|+|||++++.++ .+.|.++ + .+...+......+.-...+++ +..+.. ..|+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~-l~~~l~~~~~~~ 80 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKE-TANILKNATENS 80 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHH-HHHHHHhCCCCe
Confidence 6899999999999999998 2333211 1 011111111111111112222 233333 4899
Q ss_pred EEEEcCCCCCCChhhHHHHH----HHhhc-CCCcEEEeccCHHH
Q psy11689 240 ILFIDEIERTYNCEYREQTA----DNAKK-PRIPRTNGGYREQT 278 (390)
Q Consensus 240 il~lDEid~~l~~r~~~~~~----~~~~~-~~~~~i~~~~~~~~ 278 (390)
++++||+.+.+++....... ..+.. ...+.+..+|....
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l 124 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL 124 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence 99999999999987554432 33333 35677788887643
No 496
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.08 E-value=1.8e-05 Score=84.35 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=43.7
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHhcCc
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+++|...+|.++++||+..-+|..........+.. ...+.+..+|....+..+++
T Consensus 154 ~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~ 212 (648)
T PRK10535 154 SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAER 212 (648)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCE
Confidence 555778889999999999999999988777665533 36788899998877655543
No 497
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=2.6e-05 Score=73.07 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.++++||+.+.+|........+.+... ..+.+..+|+...+..
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 212 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAAR 212 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 35557777889999999999999998887766655432 4777888898765553
No 498
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=2.7e-05 Score=73.06 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~ 280 (390)
.+++|....|.++++||+.+.+|........+.+... ..+.+..+|++..+.
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~ 211 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAA 211 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHH
Confidence 4556777789999999999999998877766554322 467788888875543
No 499
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.08 E-value=2.6e-05 Score=74.14 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=39.9
Q ss_pred HHHHHHh---------cCCeEEEEcCCCCCCChhhHHHHHHHhhc---C-CCcEEEeccCHHHHH
Q psy11689 229 LFHRARL---------AAPAILFIDEIERTYNCEYREQTADNAKK---P-RIPRTNGGYREQTAD 280 (390)
Q Consensus 229 ~f~~A~~---------~~p~il~lDEid~~l~~r~~~~~~~~~~~---~-~~~~i~~~~~~~~i~ 280 (390)
.+.+|.. .+|.++++||+.+.+|........+.+.. . +.+.+.++|+...+.
T Consensus 155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~ 219 (272)
T PRK13547 155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA 219 (272)
T ss_pred HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 5556776 48999999999999999988777665533 2 577888999876554
No 500
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.08 E-value=1.5e-05 Score=75.69 Aligned_cols=52 Identities=19% Similarity=0.077 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHH
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQ 277 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~ 277 (390)
.+.-+++|....|.|+++||+.+.+|+--..+.++.+ .+...|.+.++|.+.
T Consensus 171 QRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 171 QRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred HHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 3456778999999999999999999986555544444 445788888988764
Done!