Query psy11689
Match_columns 390
No_of_seqs 348 out of 4003
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 16:22:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.5E-49 8.4E-54 419.9 0.2 358 4-388 333-759 (806)
2 4b4t_J 26S protease regulatory 100.0 4.9E-39 1.7E-43 316.2 10.9 241 122-375 135-392 (405)
3 4b4t_I 26S protease regulatory 100.0 1.3E-37 4.6E-42 306.8 10.9 241 128-381 175-432 (437)
4 4b4t_H 26S protease regulatory 100.0 1.8E-37 6E-42 308.7 11.6 237 140-380 205-458 (467)
5 4b4t_L 26S protease subunit RP 100.0 1.7E-37 5.7E-42 309.5 11.0 242 141-386 178-436 (437)
6 4b4t_K 26S protease regulatory 100.0 1.2E-36 3.9E-41 303.0 13.5 246 128-386 165-428 (428)
7 4b4t_M 26S protease regulatory 100.0 1.9E-37 6.3E-42 309.0 7.2 245 127-386 173-434 (434)
8 1ypw_A Transitional endoplasmi 100.0 1.2E-33 4.3E-38 303.3 0.7 350 10-387 339-758 (806)
9 3cf2_A TER ATPase, transitiona 100.0 7.5E-31 2.6E-35 278.5 8.3 226 141-370 201-457 (806)
10 2x8a_A Nuclear valosin-contain 100.0 1.3E-27 4.5E-32 226.0 16.7 236 128-379 3-271 (274)
11 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.8E-28 9.6E-33 235.8 5.1 212 128-355 5-233 (322)
12 3cf0_A Transitional endoplasmi 99.9 5.6E-28 1.9E-32 231.4 6.8 241 123-380 3-289 (301)
13 3eie_A Vacuolar protein sortin 99.9 5E-28 1.7E-32 233.9 4.8 214 127-356 10-239 (322)
14 2qp9_X Vacuolar protein sortin 99.9 2.2E-27 7.6E-32 232.5 5.3 215 125-355 41-271 (355)
15 2ce7_A Cell division protein F 99.9 2.7E-25 9.3E-30 224.5 18.9 232 144-380 16-264 (476)
16 2zan_A Vacuolar protein sortin 99.9 2.6E-26 8.8E-31 231.3 5.4 219 125-355 124-355 (444)
17 1lv7_A FTSH; alpha/beta domain 99.9 5E-25 1.7E-29 205.6 13.6 231 137-376 5-256 (257)
18 3h4m_A Proteasome-activating n 99.9 1.4E-24 4.8E-29 205.3 14.1 231 128-373 10-259 (285)
19 2dhr_A FTSH; AAA+ protein, hex 99.9 1.8E-24 6.1E-29 219.7 13.3 233 142-379 29-278 (499)
20 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.2E-24 3.9E-29 202.9 9.9 231 142-380 4-257 (262)
21 3b9p_A CG5977-PA, isoform A; A 99.9 9.2E-25 3.2E-29 207.9 8.2 237 122-372 8-272 (297)
22 3d8b_A Fidgetin-like protein 1 99.9 1.9E-24 6.5E-29 211.7 8.4 245 121-380 70-342 (357)
23 3hu3_A Transitional endoplasmi 99.9 3.6E-24 1.2E-28 217.6 8.8 219 145-371 205-458 (489)
24 2r62_A Cell division protease 99.9 8.5E-25 2.9E-29 205.1 2.8 229 143-375 10-256 (268)
25 1ixz_A ATP-dependent metallopr 99.9 5.8E-23 2E-27 191.3 14.1 225 127-369 8-253 (254)
26 3vfd_A Spastin; ATPase, microt 99.9 2.4E-23 8.3E-28 206.1 6.5 236 134-373 105-366 (389)
27 1iy2_A ATP-dependent metallopr 99.9 1E-21 3.5E-26 185.5 14.1 224 130-369 35-277 (278)
28 1ypw_A Transitional endoplasmi 99.8 7.8E-20 2.7E-24 196.3 13.6 210 140-357 200-427 (806)
29 3t15_A Ribulose bisphosphate c 99.7 6.3E-19 2.2E-23 167.9 2.2 163 174-343 32-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.6 8.8E-18 3E-22 169.6 -1.2 103 145-256 38-145 (456)
31 3syl_A Protein CBBX; photosynt 99.6 8.2E-15 2.8E-19 139.5 10.8 104 145-252 32-145 (309)
32 3uk6_A RUVB-like 2; hexameric 99.5 5.9E-14 2E-18 136.9 9.4 215 143-370 43-328 (368)
33 1d2n_A N-ethylmaleimide-sensit 99.5 1.7E-14 5.8E-19 135.2 3.6 199 145-348 34-245 (272)
34 3pfi_A Holliday junction ATP-d 99.4 4.1E-13 1.4E-17 129.5 10.7 219 133-371 18-253 (338)
35 4b4t_J 26S protease regulatory 99.4 3E-14 1E-18 140.0 0.4 85 4-103 280-370 (405)
36 2z4s_A Chromosomal replication 99.4 2.9E-12 9.9E-17 128.6 12.2 190 178-372 130-332 (440)
37 4b4t_I 26S protease regulatory 99.3 5.3E-14 1.8E-18 138.8 -1.7 85 4-103 314-404 (437)
38 3m6a_A ATP-dependent protease 99.3 3E-13 1E-17 139.2 3.5 225 145-378 82-347 (543)
39 4b4t_H 26S protease regulatory 99.3 1.1E-13 3.9E-18 137.7 -0.2 85 4-103 341-431 (467)
40 1sxj_A Activator 1 95 kDa subu 99.3 6.8E-13 2.3E-17 135.8 5.0 123 130-252 25-163 (516)
41 4b4t_K 26S protease regulatory 99.3 2.6E-13 8.8E-18 135.0 0.2 86 4-104 304-396 (428)
42 4b4t_M 26S protease regulatory 99.3 1.5E-13 5.2E-18 136.8 -1.5 85 4-103 313-403 (434)
43 4b4t_L 26S protease subunit RP 99.3 2.1E-13 7.1E-18 135.9 -1.5 85 4-103 313-403 (437)
44 3bos_A Putative DNA replicatio 99.3 3.6E-11 1.2E-15 109.2 12.4 179 177-369 51-240 (242)
45 1ofh_A ATP-dependent HSL prote 99.3 6.5E-12 2.2E-16 119.0 7.4 109 145-253 16-132 (310)
46 1jbk_A CLPB protein; beta barr 99.2 3.2E-11 1.1E-15 105.1 10.9 100 140-252 18-130 (195)
47 3pvs_A Replication-associated 99.2 1.2E-11 4.2E-16 124.2 9.3 213 133-372 15-244 (447)
48 1l8q_A Chromosomal replication 99.2 3E-11 1E-15 115.9 10.3 196 177-379 36-246 (324)
49 1hqc_A RUVB; extended AAA-ATPa 99.2 2E-11 7E-16 116.6 9.0 213 139-370 7-236 (324)
50 1r6b_X CLPA protein; AAA+, N-t 99.2 1.1E-11 3.9E-16 132.3 7.2 228 132-378 174-438 (758)
51 3hws_A ATP-dependent CLP prote 99.2 5.8E-12 2E-16 123.0 4.5 108 145-252 16-131 (363)
52 1g41_A Heat shock protein HSLU 99.2 6.4E-12 2.2E-16 125.3 4.6 105 145-253 16-123 (444)
53 3pxi_A Negative regulator of g 99.2 1.4E-11 4.8E-16 131.7 7.0 110 145-263 492-604 (758)
54 2v1u_A Cell division control p 99.2 5.5E-11 1.9E-15 115.8 10.1 215 144-371 19-275 (387)
55 3u61_B DNA polymerase accessor 99.2 1.4E-10 4.8E-15 111.1 12.2 108 130-256 12-124 (324)
56 1njg_A DNA polymerase III subu 99.2 8.8E-11 3E-15 106.0 10.0 210 134-369 13-248 (250)
57 2p65_A Hypothetical protein PF 99.2 4.7E-11 1.6E-15 103.9 7.8 99 139-250 17-128 (187)
58 2chg_A Replication factor C sm 99.2 1.9E-10 6.4E-15 102.6 11.9 99 134-251 7-116 (226)
59 3cmw_A Protein RECA, recombina 99.1 5.2E-11 1.8E-15 134.7 8.2 110 145-254 1021-1177(1706)
60 1r6b_X CLPA protein; AAA+, N-t 99.1 2.1E-11 7.2E-16 130.3 4.6 228 10-262 314-581 (758)
61 3pxg_A Negative regulator of g 99.1 9.7E-11 3.3E-15 118.3 9.1 98 131-244 167-274 (468)
62 1fnn_A CDC6P, cell division co 99.1 9.6E-10 3.3E-14 107.2 15.6 217 144-371 17-273 (389)
63 2qby_A CDC6 homolog 1, cell di 99.1 3.1E-10 1.1E-14 110.3 10.7 214 144-370 20-270 (386)
64 1qvr_A CLPB protein; coiled co 99.1 1.5E-10 5.2E-15 125.2 8.1 107 134-253 160-279 (854)
65 1in4_A RUVB, holliday junction 99.1 9.2E-10 3.1E-14 106.3 12.7 210 142-371 23-249 (334)
66 1um8_A ATP-dependent CLP prote 99.1 2.2E-10 7.6E-15 112.2 8.1 107 145-252 22-152 (376)
67 1sxj_D Activator 1 41 kDa subu 99.0 6.9E-10 2.4E-14 107.0 11.0 207 131-368 24-259 (353)
68 3vlf_B 26S protease regulatory 99.0 2.5E-10 8.4E-15 88.6 5.5 82 302-386 4-85 (88)
69 2qby_B CDC6 homolog 3, cell di 99.0 5.8E-10 2E-14 108.8 8.0 215 144-372 20-270 (384)
70 3ec2_A DNA replication protein 99.0 9.9E-10 3.4E-14 96.1 8.7 82 171-254 31-118 (180)
71 3pxi_A Negative regulator of g 99.0 1.6E-09 5.6E-14 115.6 11.8 97 132-244 168-274 (758)
72 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 3.7E-10 1.3E-14 114.6 3.9 203 145-366 23-280 (500)
73 3nh6_A ATP-binding cassette SU 98.9 3E-09 1E-13 101.3 9.5 62 223-284 194-257 (306)
74 3n70_A Transport activator; si 98.9 1.4E-09 4.9E-14 92.0 6.3 85 145-250 2-89 (145)
75 3tif_A Uncharacterized ABC tra 98.9 7.2E-09 2.5E-13 95.1 11.0 56 224-279 150-209 (235)
76 2chq_A Replication factor C sm 98.9 2.1E-09 7.3E-14 101.8 7.5 103 133-250 6-115 (319)
77 3tui_C Methionine import ATP-b 98.9 7.6E-09 2.6E-13 100.7 11.3 61 224-284 168-233 (366)
78 2r44_A Uncharacterized protein 98.9 3.3E-09 1.1E-13 101.8 8.6 52 145-211 28-79 (331)
79 1jr3_A DNA polymerase III subu 98.9 5.6E-09 1.9E-13 101.4 10.1 207 134-368 6-240 (373)
80 3co5_A Putative two-component 98.9 6E-10 2.1E-14 94.1 2.6 85 145-251 5-89 (143)
81 3rlf_A Maltose/maltodextrin im 98.9 1E-08 3.5E-13 100.3 11.6 113 172-284 23-203 (381)
82 2krk_A 26S protease regulatory 98.9 2.7E-09 9.1E-14 82.3 5.9 74 297-373 9-82 (86)
83 1sxj_E Activator 1 40 kDa subu 98.9 2.2E-09 7.5E-14 103.7 6.6 130 133-276 3-174 (354)
84 2dzn_B 26S protease regulatory 98.9 1.9E-09 6.5E-14 82.3 4.8 65 319-385 17-81 (82)
85 3kw6_A 26S protease regulatory 98.8 2.5E-09 8.7E-14 80.8 5.2 73 298-373 2-74 (78)
86 3fvq_A Fe(3+) IONS import ATP- 98.8 1.4E-08 4.8E-13 98.6 11.7 61 224-284 143-208 (359)
87 3te6_A Regulatory protein SIR3 98.8 5E-09 1.7E-13 100.3 8.0 75 176-250 43-145 (318)
88 2pcj_A ABC transporter, lipopr 98.8 1.7E-08 5.8E-13 91.9 9.8 52 228-279 149-203 (224)
89 4g1u_C Hemin import ATP-bindin 98.8 1.8E-08 6.1E-13 94.2 10.1 61 224-284 146-217 (266)
90 2yyz_A Sugar ABC transporter, 98.8 2.9E-08 9.9E-13 96.6 11.9 61 224-284 138-203 (359)
91 1z47_A CYSA, putative ABC-tran 98.8 2.6E-08 8.8E-13 96.7 11.4 61 224-284 150-215 (355)
92 3gfo_A Cobalt import ATP-bindi 98.8 1.4E-08 4.9E-13 95.3 9.1 61 224-284 148-213 (275)
93 1vpl_A ABC transporter, ATP-bi 98.8 3E-08 1E-12 92.1 10.8 55 227-281 154-211 (256)
94 2it1_A 362AA long hypothetical 98.8 2.8E-08 9.7E-13 96.7 11.0 61 224-284 138-203 (362)
95 1g8p_A Magnesium-chelatase 38 98.8 5.3E-09 1.8E-13 100.7 5.3 33 338-370 288-320 (350)
96 2ff7_A Alpha-hemolysin translo 98.7 1.7E-08 5.7E-13 93.3 7.9 60 224-283 150-211 (247)
97 2x8a_A Nuclear valosin-contain 98.7 9.5E-10 3.3E-14 103.3 -0.6 79 10-103 145-234 (274)
98 3d31_A Sulfate/molybdate ABC t 98.7 4.2E-08 1.4E-12 95.0 10.9 113 172-284 20-197 (348)
99 3aji_B S6C, proteasome (prosom 98.7 9.7E-09 3.3E-13 78.5 5.1 57 319-377 20-76 (83)
100 1v43_A Sugar-binding transport 98.7 3.2E-08 1.1E-12 96.6 9.8 57 228-284 150-211 (372)
101 4fcw_A Chaperone protein CLPB; 98.7 2.6E-08 8.8E-13 94.3 8.9 111 145-262 18-143 (311)
102 2ixe_A Antigen peptide transpo 98.7 7.2E-08 2.5E-12 90.3 11.7 60 224-283 161-224 (271)
103 1sxj_B Activator 1 37 kDa subu 98.7 2.4E-08 8.3E-13 94.7 8.5 101 132-251 9-121 (323)
104 2onk_A Molybdate/tungstate ABC 98.7 5.2E-08 1.8E-12 89.6 10.5 55 226-280 133-191 (240)
105 1iqp_A RFCS; clamp loader, ext 98.7 3.7E-08 1.3E-12 93.5 9.7 102 131-251 12-124 (327)
106 2nq2_C Hypothetical ABC transp 98.7 6.9E-08 2.4E-12 89.5 11.0 109 172-280 25-193 (253)
107 4gp7_A Metallophosphoesterase; 98.7 1.6E-08 5.4E-13 87.9 6.2 109 173-281 4-164 (171)
108 1ye8_A Protein THEP1, hypothet 98.7 8.1E-08 2.8E-12 84.2 10.7 95 180-274 2-138 (178)
109 1mv5_A LMRA, multidrug resista 98.7 2.5E-08 8.6E-13 91.9 7.7 61 224-284 144-206 (243)
110 4f4c_A Multidrug resistance pr 98.7 1.7E-08 5.9E-13 113.6 7.9 63 222-284 1220-1284(1321)
111 1oxx_K GLCV, glucose, ABC tran 98.7 6E-08 2.1E-12 94.2 10.7 61 224-284 145-210 (353)
112 2olj_A Amino acid ABC transpor 98.7 9.3E-08 3.2E-12 89.1 11.4 54 228-281 168-224 (263)
113 3qf4_A ABC transporter, ATP-bi 98.7 4.3E-08 1.5E-12 101.6 9.8 62 223-284 483-546 (587)
114 3hu3_A Transitional endoplasmi 98.7 3.8E-09 1.3E-13 107.1 1.7 118 10-151 339-484 (489)
115 3qf4_B Uncharacterized ABC tra 98.7 4.2E-08 1.4E-12 102.0 9.4 62 223-284 495-558 (598)
116 1ji0_A ABC transporter; ATP bi 98.7 7.3E-08 2.5E-12 88.6 9.8 54 227-280 147-203 (240)
117 1g29_1 MALK, maltose transport 98.7 9.9E-08 3.4E-12 93.3 11.2 58 227-284 147-209 (372)
118 2pze_A Cystic fibrosis transme 98.7 9.1E-08 3.1E-12 87.3 10.3 113 172-284 28-198 (229)
119 2cbz_A Multidrug resistance-as 98.7 9.6E-08 3.3E-12 87.6 10.4 108 172-279 25-192 (237)
120 3f9v_A Minichromosome maintena 98.7 1.8E-09 6.2E-14 112.1 -1.3 37 332-370 549-585 (595)
121 3b5x_A Lipid A export ATP-bind 98.7 8.3E-08 2.8E-12 99.4 11.0 61 224-284 485-547 (582)
122 2kjq_A DNAA-related protein; s 98.6 2.8E-08 9.4E-13 84.6 6.0 62 177-253 35-99 (149)
123 3gd7_A Fusion complex of cysti 98.6 4.4E-08 1.5E-12 96.3 8.3 63 222-284 158-222 (390)
124 4a82_A Cystic fibrosis transme 98.6 5.1E-08 1.8E-12 100.9 9.0 62 223-284 481-544 (578)
125 2bjv_A PSP operon transcriptio 98.6 5.9E-08 2E-12 90.0 7.8 96 142-251 4-114 (265)
126 2ghi_A Transport protein; mult 98.6 9.3E-08 3.2E-12 89.0 8.9 56 224-279 160-217 (260)
127 4f4c_A Multidrug resistance pr 98.6 4.8E-08 1.6E-12 110.1 8.0 63 222-284 557-621 (1321)
128 3b60_A Lipid A export ATP-bind 98.6 7.7E-08 2.6E-12 99.7 9.0 62 223-284 484-547 (582)
129 2yz2_A Putative ABC transporte 98.6 1.3E-07 4.4E-12 88.3 9.3 57 224-280 143-202 (266)
130 1ojl_A Transcriptional regulat 98.6 2E-07 6.7E-12 88.7 10.7 103 145-263 3-121 (304)
131 2qi9_C Vitamin B12 import ATP- 98.6 1.8E-07 6.3E-12 86.4 9.8 109 172-280 20-197 (249)
132 2yl4_A ATP-binding cassette SU 98.6 1.4E-07 4.7E-12 98.1 9.9 62 223-284 487-550 (595)
133 1g6h_A High-affinity branched- 98.6 2.2E-07 7.4E-12 86.3 10.0 54 226-279 160-216 (257)
134 1sxj_C Activator 1 40 kDa subu 98.5 1.5E-07 5.3E-12 90.6 8.9 102 131-251 12-124 (340)
135 2d2e_A SUFC protein; ABC-ATPas 98.5 2.1E-07 7.2E-12 86.0 8.6 56 225-280 149-207 (250)
136 2bbs_A Cystic fibrosis transme 98.5 3.8E-07 1.3E-11 86.2 10.1 113 172-284 58-227 (290)
137 2w58_A DNAI, primosome compone 98.5 5.7E-08 2E-12 86.2 3.7 70 178-249 54-127 (202)
138 3k1j_A LON protease, ATP-depen 98.5 1.7E-07 6E-12 97.4 7.9 44 145-203 42-85 (604)
139 3ozx_A RNAse L inhibitor; ATP 98.5 5.4E-07 1.9E-11 92.3 11.1 112 173-284 289-455 (538)
140 1sgw_A Putative ABC transporte 98.5 1.7E-07 5.6E-12 84.7 6.2 107 172-278 29-195 (214)
141 2ihy_A ABC transporter, ATP-bi 98.5 4.2E-07 1.5E-11 85.4 9.0 52 228-279 170-226 (279)
142 3g5u_A MCG1178, multidrug resi 98.5 3E-07 1E-11 103.4 9.3 62 223-284 530-593 (1284)
143 2vhj_A Ntpase P4, P4; non- hyd 98.4 2.2E-07 7.5E-12 88.6 6.8 78 174-253 119-198 (331)
144 2zu0_C Probable ATP-dependent 98.4 1.1E-06 3.6E-11 82.1 11.2 57 224-280 169-228 (267)
145 1qvr_A CLPB protein; coiled co 98.4 2.6E-07 9E-12 99.9 7.7 112 145-263 559-685 (854)
146 1w5s_A Origin recognition comp 98.4 4.4E-07 1.5E-11 89.0 8.7 216 144-370 22-291 (412)
147 3cf0_A Transitional endoplasmi 98.4 2.3E-08 7.9E-13 94.9 -1.0 78 10-102 153-236 (301)
148 1b0u_A Histidine permease; ABC 98.4 9.7E-07 3.3E-11 82.1 10.1 53 228-280 162-217 (262)
149 3g5u_A MCG1178, multidrug resi 98.4 4.5E-07 1.5E-11 101.9 8.7 63 222-284 1174-1238(1284)
150 2eyu_A Twitching motility prot 98.4 5E-07 1.7E-11 84.0 6.7 104 171-278 18-135 (261)
151 2ce7_A Cell division protein F 98.4 4.4E-08 1.5E-12 98.7 -0.6 80 9-103 152-237 (476)
152 1yqt_A RNAse L inhibitor; ATP- 98.3 2.2E-06 7.5E-11 87.8 11.6 111 174-284 308-471 (538)
153 3bk7_A ABC transporter ATP-bin 98.3 2E-06 6.9E-11 89.2 11.2 108 174-281 378-537 (607)
154 2cvh_A DNA repair and recombin 98.3 2.1E-06 7.2E-11 76.6 9.8 38 174-211 16-53 (220)
155 1yqt_A RNAse L inhibitor; ATP- 98.3 3.1E-06 1E-10 86.8 12.1 62 223-284 162-227 (538)
156 2pjz_A Hypothetical protein ST 98.3 3E-06 1E-10 78.8 11.0 108 172-280 25-189 (263)
157 3j16_B RLI1P; ribosome recycli 98.3 3.2E-06 1.1E-10 87.7 11.6 62 223-284 471-537 (608)
158 2w0m_A SSO2452; RECA, SSPF, un 98.3 1.1E-06 3.8E-11 78.9 7.1 103 174-276 19-168 (235)
159 3ozx_A RNAse L inhibitor; ATP 98.3 3.9E-06 1.3E-10 85.9 11.8 58 224-281 143-202 (538)
160 3jvv_A Twitching mobility prot 98.3 7.8E-07 2.7E-11 86.5 6.2 105 176-284 121-239 (356)
161 3j16_B RLI1P; ribosome recycli 98.2 6E-06 2E-10 85.7 12.7 61 224-284 226-290 (608)
162 2pt7_A CAG-ALFA; ATPase, prote 98.2 5.9E-07 2E-11 86.4 4.2 108 173-284 166-283 (330)
163 4a74_A DNA repair and recombin 98.2 1.7E-06 5.9E-11 77.7 6.6 28 174-201 21-48 (231)
164 3bk7_A ABC transporter ATP-bin 98.2 6.2E-06 2.1E-10 85.6 11.5 59 223-281 232-293 (607)
165 2iw3_A Elongation factor 3A; a 98.2 4.3E-06 1.5E-10 90.5 10.5 110 172-281 455-610 (986)
166 2qgz_A Helicase loader, putati 98.2 4.4E-07 1.5E-11 86.5 2.2 71 177-249 151-226 (308)
167 2dhr_A FTSH; AAA+ protein, hex 98.2 1.8E-07 6E-12 94.9 -1.1 79 10-103 168-252 (499)
168 2krk_A 26S protease regulatory 98.1 1.1E-07 3.6E-12 73.2 -2.7 51 53-104 9-63 (86)
169 3ux8_A Excinuclease ABC, A sub 98.1 5.6E-06 1.9E-10 87.0 9.5 60 224-283 548-613 (670)
170 3ux8_A Excinuclease ABC, A sub 98.1 8E-06 2.7E-10 85.9 10.5 61 224-284 207-272 (670)
171 1xwi_A SKD1 protein; VPS4B, AA 98.1 3.9E-07 1.3E-11 87.4 0.0 78 9-103 147-231 (322)
172 1ixz_A ATP-dependent metallopr 98.1 3.2E-07 1.1E-11 84.4 -0.6 79 10-103 153-237 (254)
173 2ehv_A Hypothetical protein PH 98.1 3.1E-06 1.1E-10 77.0 6.0 106 174-279 26-185 (251)
174 2gno_A DNA polymerase III, gam 98.1 5.9E-06 2E-10 78.5 7.8 82 178-265 18-109 (305)
175 1lv7_A FTSH; alpha/beta domain 98.1 4.1E-07 1.4E-11 83.9 -0.5 80 9-103 148-233 (257)
176 3cmu_A Protein RECA, recombina 98.1 3.8E-06 1.3E-10 96.5 7.2 80 174-253 1423-1521(2050)
177 1n0w_A DNA repair protein RAD5 98.0 6.6E-06 2.3E-10 74.5 7.1 81 173-253 19-135 (243)
178 1a5t_A Delta prime, HOLB; zinc 98.0 1.3E-05 4.5E-10 76.9 9.2 88 177-265 23-135 (334)
179 1tue_A Replication protein E1; 98.0 1.5E-06 5E-11 77.6 1.9 33 175-207 55-87 (212)
180 1iy2_A ATP-dependent metallopr 98.0 9.5E-07 3.2E-11 82.5 0.2 78 10-102 177-260 (278)
181 1pzn_A RAD51, DNA repair and r 98.0 1.3E-05 4.4E-10 77.7 7.9 31 172-202 125-155 (349)
182 4aby_A DNA repair protein RECN 98.0 9.6E-06 3.3E-10 79.9 7.2 61 223-283 299-363 (415)
183 3kw6_A 26S protease regulatory 98.0 3.4E-07 1.2E-11 68.9 -2.6 51 52-104 1-55 (78)
184 2ewv_A Twitching motility prot 97.9 7.2E-06 2.4E-10 80.1 5.4 104 169-276 127-244 (372)
185 3vlf_B 26S protease regulatory 97.9 6.5E-07 2.2E-11 69.1 -1.6 48 56-104 2-53 (88)
186 2iw3_A Elongation factor 3A; a 97.9 1.9E-05 6.6E-10 85.5 8.4 57 224-280 906-962 (986)
187 3t15_A Ribulose bisphosphate c 97.9 1.3E-06 4.5E-11 82.5 -1.0 69 9-93 153-222 (293)
188 2r62_A Cell division protease 97.9 9.3E-07 3.2E-11 81.8 -2.0 77 11-102 151-233 (268)
189 1svm_A Large T antigen; AAA+ f 97.9 1.4E-05 4.9E-10 78.1 6.3 68 172-251 163-230 (377)
190 3lda_A DNA repair protein RAD5 97.9 2.2E-05 7.6E-10 77.3 7.7 82 173-254 173-290 (400)
191 3h4m_A Proteasome-activating n 97.9 2.1E-06 7.2E-11 80.1 0.3 79 10-103 155-239 (285)
192 3eie_A Vacuolar protein sortin 97.8 2E-06 6.9E-11 82.2 -0.2 79 8-103 151-236 (322)
193 2qp9_X Vacuolar protein sortin 97.8 2.5E-06 8.4E-11 82.9 0.1 78 9-103 185-269 (355)
194 3thx_B DNA mismatch repair pro 97.8 3.6E-05 1.2E-09 83.2 8.8 104 173-278 668-798 (918)
195 3hr8_A Protein RECA; alpha and 97.8 3.4E-05 1.2E-09 74.7 7.5 78 174-251 57-153 (356)
196 3vaa_A Shikimate kinase, SK; s 97.8 9.8E-06 3.4E-10 71.7 3.4 39 172-210 19-57 (199)
197 4akg_A Glutathione S-transfera 97.8 0.00017 5.9E-09 85.5 14.6 72 175-248 1606-1678(2695)
198 2i3b_A HCR-ntpase, human cance 97.8 1.9E-05 6.7E-10 69.6 5.0 25 178-202 1-25 (189)
199 2zr9_A Protein RECA, recombina 97.8 2.5E-05 8.6E-10 75.6 6.2 79 173-251 56-153 (349)
200 1cr0_A DNA primase/helicase; R 97.8 8E-05 2.7E-09 69.9 9.4 29 173-201 30-58 (296)
201 1qhx_A CPT, protein (chloramph 97.8 3.1E-05 1E-09 66.7 6.0 31 178-208 3-33 (178)
202 2zan_A Vacuolar protein sortin 97.7 2.8E-06 9.6E-11 85.0 -1.0 78 9-103 269-353 (444)
203 3thx_A DNA mismatch repair pro 97.7 7.3E-05 2.5E-09 81.0 9.8 103 175-279 659-788 (934)
204 3pih_A Uvrabc system protein A 97.7 0.0001 3.5E-09 79.6 10.1 61 224-284 810-876 (916)
205 2qen_A Walker-type ATPase; unk 97.7 8.6E-05 2.9E-09 70.6 8.5 44 145-203 13-56 (350)
206 2fna_A Conserved hypothetical 97.7 9.1E-05 3.1E-09 70.5 8.5 50 145-211 14-63 (357)
207 2qz4_A Paraplegin; AAA+, SPG7, 97.7 3.5E-06 1.2E-10 77.3 -1.5 78 9-101 143-228 (262)
208 3aji_B S6C, proteasome (prosom 97.7 2.3E-06 7.9E-11 65.0 -2.2 48 56-104 2-53 (83)
209 2r2a_A Uncharacterized protein 97.7 1.4E-05 4.9E-10 71.1 2.4 76 178-253 5-103 (199)
210 2dr3_A UPF0273 protein PH0284; 97.6 0.00014 4.7E-09 65.7 8.5 28 173-200 18-45 (247)
211 1vma_A Cell division protein F 97.6 0.00029 9.8E-09 66.8 10.7 75 175-249 101-198 (306)
212 2z43_A DNA repair and recombin 97.6 5.6E-05 1.9E-09 72.2 5.8 79 173-251 102-217 (324)
213 3b85_A Phosphate starvation-in 97.6 4.4E-05 1.5E-09 68.4 4.7 26 176-201 20-45 (208)
214 1xp8_A RECA protein, recombina 97.6 7.6E-05 2.6E-09 72.6 6.8 78 174-251 70-166 (366)
215 1zp6_A Hypothetical protein AT 97.6 2.4E-05 8.2E-10 68.2 2.9 37 175-211 6-42 (191)
216 1y63_A LMAJ004144AAA protein; 97.6 3.3E-05 1.1E-09 67.4 3.7 36 175-210 7-43 (184)
217 3trf_A Shikimate kinase, SK; a 97.6 3E-05 1E-09 67.3 3.3 33 178-210 5-37 (185)
218 1v5w_A DMC1, meiotic recombina 97.6 0.0001 3.5E-09 71.0 7.0 80 173-252 117-234 (343)
219 1u94_A RECA protein, recombina 97.6 0.0001 3.5E-09 71.4 6.9 78 174-251 59-155 (356)
220 2rhm_A Putative kinase; P-loop 97.5 3.9E-05 1.3E-09 66.8 3.5 33 176-208 3-35 (193)
221 1nlf_A Regulatory protein REPA 97.5 0.00011 3.9E-09 68.3 6.7 28 174-201 26-53 (279)
222 1ny5_A Transcriptional regulat 97.5 0.00013 4.5E-09 71.5 7.0 81 177-262 159-255 (387)
223 2dzn_B 26S protease regulatory 97.5 4.1E-06 1.4E-10 63.6 -3.0 46 58-104 1-50 (82)
224 3iij_A Coilin-interacting nucl 97.5 6E-05 2.1E-09 65.2 3.6 34 176-209 9-42 (180)
225 1kag_A SKI, shikimate kinase I 97.5 5.4E-05 1.9E-09 64.8 3.3 31 178-208 4-34 (173)
226 2p5t_B PEZT; postsegregational 97.4 0.00016 5.5E-09 66.4 6.4 40 175-214 29-68 (253)
227 1tf7_A KAIC; homohexamer, hexa 97.4 0.00022 7.5E-09 72.7 7.9 103 173-276 276-417 (525)
228 3kb2_A SPBC2 prophage-derived 97.4 6.3E-05 2.1E-09 64.1 3.1 31 180-210 3-33 (173)
229 1gvn_B Zeta; postsegregational 97.4 0.00032 1.1E-08 65.9 7.9 36 176-211 31-66 (287)
230 2iyv_A Shikimate kinase, SK; t 97.4 6.9E-05 2.4E-09 65.0 3.0 32 179-210 3-34 (184)
231 1s96_A Guanylate kinase, GMP k 97.4 0.00043 1.5E-08 62.3 8.3 28 175-202 13-40 (219)
232 3qf7_A RAD50; ABC-ATPase, ATPa 97.4 0.00085 2.9E-08 65.1 11.0 48 236-283 302-352 (365)
233 2o8b_B DNA mismatch repair pro 97.4 0.00093 3.2E-08 73.2 12.3 103 178-281 789-917 (1022)
234 1via_A Shikimate kinase; struc 97.4 6.9E-05 2.4E-09 64.5 2.8 30 180-209 6-35 (175)
235 1knq_A Gluconate kinase; ALFA/ 97.4 0.0001 3.4E-09 63.4 3.7 32 177-208 7-38 (175)
236 3cm0_A Adenylate kinase; ATP-b 97.4 7.1E-05 2.4E-09 64.9 2.7 33 177-209 3-35 (186)
237 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00027 9.1E-09 65.2 6.6 36 177-212 3-41 (260)
238 2cdn_A Adenylate kinase; phosp 97.3 0.0001 3.4E-09 65.0 3.5 33 177-209 19-51 (201)
239 1zuh_A Shikimate kinase; alpha 97.3 9.3E-05 3.2E-09 63.2 3.1 33 177-209 6-38 (168)
240 4eun_A Thermoresistant glucoki 97.3 0.00011 3.7E-09 64.9 3.6 32 176-207 27-58 (200)
241 3cmu_A Protein RECA, recombina 97.3 0.00029 9.8E-09 81.3 7.8 81 173-253 1076-1175(2050)
242 2c95_A Adenylate kinase 1; tra 97.3 0.0001 3.5E-09 64.3 3.3 32 177-208 8-39 (196)
243 1tev_A UMP-CMP kinase; ploop, 97.3 9.6E-05 3.3E-09 64.2 3.1 31 178-208 3-33 (196)
244 3qkt_A DNA double-strand break 97.3 0.0011 3.8E-08 63.5 10.8 51 229-279 264-317 (339)
245 1u0j_A DNA replication protein 97.3 0.00013 4.4E-09 67.7 3.9 28 176-203 102-129 (267)
246 3t61_A Gluconokinase; PSI-biol 97.3 0.00013 4.4E-09 64.3 3.7 31 178-208 18-48 (202)
247 1ewq_A DNA mismatch repair pro 97.3 0.00025 8.6E-09 75.3 6.6 99 178-278 576-700 (765)
248 1kht_A Adenylate kinase; phosp 97.3 0.00011 3.6E-09 63.8 3.1 26 178-203 3-28 (192)
249 1aky_A Adenylate kinase; ATP:A 97.3 0.00011 3.9E-09 65.7 3.4 33 177-209 3-35 (220)
250 4akg_A Glutathione S-transfera 97.3 0.00026 8.8E-09 84.1 7.0 67 177-250 644-710 (2695)
251 1ly1_A Polynucleotide kinase; 97.3 0.00011 3.8E-09 63.0 3.0 30 178-207 2-32 (181)
252 2npi_A Protein CLP1; CLP1-PCF1 97.3 0.00035 1.2E-08 70.0 7.1 105 172-277 132-299 (460)
253 3lw7_A Adenylate kinase relate 97.3 0.0001 3.4E-09 62.7 2.6 29 180-209 3-31 (179)
254 1qf9_A UMP/CMP kinase, protein 97.3 0.00014 4.9E-09 63.0 3.6 33 177-209 5-37 (194)
255 3io5_A Recombination and repai 97.3 0.00038 1.3E-08 66.1 6.6 78 173-251 24-125 (333)
256 2ze6_A Isopentenyl transferase 97.3 0.00012 4.3E-09 67.3 3.2 31 180-210 3-33 (253)
257 1e6c_A Shikimate kinase; phosp 97.2 0.00013 4.4E-09 62.3 3.1 31 179-209 3-33 (173)
258 3be4_A Adenylate kinase; malar 97.2 0.00012 4E-09 65.6 2.8 33 177-209 4-36 (217)
259 1zd8_A GTP:AMP phosphotransfer 97.2 0.00013 4.3E-09 65.8 3.0 33 176-208 5-37 (227)
260 1htw_A HI0065; nucleotide-bind 97.2 0.00019 6.5E-09 61.3 3.9 31 172-202 27-57 (158)
261 1zak_A Adenylate kinase; ATP:A 97.2 0.00014 4.9E-09 65.1 3.3 32 177-208 4-35 (222)
262 2bwj_A Adenylate kinase 5; pho 97.2 0.00014 4.8E-09 63.5 3.1 32 177-208 11-42 (199)
263 3nwj_A ATSK2; P loop, shikimat 97.2 0.0001 3.6E-09 67.8 2.0 32 178-209 48-79 (250)
264 1tf7_A KAIC; homohexamer, hexa 97.2 0.00077 2.6E-08 68.6 8.6 105 174-278 35-187 (525)
265 3umf_A Adenylate kinase; rossm 97.2 0.0002 6.8E-09 64.5 3.7 34 174-207 25-58 (217)
266 2vli_A Antibiotic resistance p 97.2 0.00012 4.2E-09 63.1 2.3 31 177-207 4-34 (183)
267 1wb9_A DNA mismatch repair pro 97.2 0.00068 2.3E-08 72.4 8.4 100 176-277 605-731 (800)
268 2gza_A Type IV secretion syste 97.2 0.00051 1.8E-08 66.6 6.8 77 172-248 169-263 (361)
269 1ukz_A Uridylate kinase; trans 97.2 0.00019 6.5E-09 63.2 3.3 33 177-209 14-46 (203)
270 2i1q_A DNA repair and recombin 97.2 0.00028 9.4E-09 67.1 4.6 29 173-201 93-121 (322)
271 3tr0_A Guanylate kinase, GMP k 97.2 0.00024 8.2E-09 62.4 3.9 28 175-202 4-31 (205)
272 2pt5_A Shikimate kinase, SK; a 97.2 0.00019 6.4E-09 61.1 3.1 29 180-208 2-30 (168)
273 1p9r_A General secretion pathw 97.2 0.00074 2.5E-08 66.8 7.8 73 176-248 165-247 (418)
274 3dl0_A Adenylate kinase; phosp 97.2 0.00017 5.9E-09 64.1 2.9 30 180-209 2-31 (216)
275 1ak2_A Adenylate kinase isoenz 97.2 0.00021 7.2E-09 64.6 3.5 33 177-209 15-47 (233)
276 3tlx_A Adenylate kinase 2; str 97.2 0.0002 6.7E-09 65.5 3.3 34 176-209 27-60 (243)
277 2b8t_A Thymidine kinase; deoxy 97.1 0.0005 1.7E-08 62.1 6.0 96 177-275 11-125 (223)
278 3fb4_A Adenylate kinase; psych 97.1 0.00019 6.4E-09 63.9 3.0 30 180-209 2-31 (216)
279 1z6g_A Guanylate kinase; struc 97.1 0.00023 8E-09 63.8 3.6 31 172-202 17-47 (218)
280 2j41_A Guanylate kinase; GMP, 97.1 0.00026 9E-09 62.2 3.9 28 175-202 3-30 (207)
281 2pez_A Bifunctional 3'-phospho 97.1 0.00023 7.8E-09 61.4 3.4 36 176-211 3-41 (179)
282 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00068 2.3E-08 65.4 6.9 30 179-208 25-54 (359)
283 3crm_A TRNA delta(2)-isopenten 97.1 0.00095 3.2E-08 63.6 7.8 34 178-211 5-38 (323)
284 1m7g_A Adenylylsulfate kinase; 97.1 0.00086 2.9E-08 59.5 6.9 29 175-203 22-50 (211)
285 1cke_A CK, MSSA, protein (cyti 97.1 0.00026 8.8E-09 63.3 3.4 30 178-207 5-34 (227)
286 3kl4_A SRP54, signal recogniti 97.1 0.00097 3.3E-08 66.1 7.8 74 177-250 96-192 (433)
287 2vf7_A UVRA2, excinuclease ABC 97.1 0.00059 2E-08 73.1 6.6 59 225-283 736-800 (842)
288 2jeo_A Uridine-cytidine kinase 97.1 0.00036 1.2E-08 63.6 4.2 34 172-205 19-52 (245)
289 3uie_A Adenylyl-sulfate kinase 97.1 0.00032 1.1E-08 61.8 3.8 28 176-203 23-50 (200)
290 2ygr_A Uvrabc system protein A 97.1 0.0014 4.9E-08 70.9 9.4 60 224-283 868-933 (993)
291 1rj9_A FTSY, signal recognitio 97.0 0.0018 6.1E-08 61.3 9.0 26 177-202 101-126 (304)
292 2oap_1 GSPE-2, type II secreti 97.0 0.00028 9.5E-09 71.7 3.6 74 175-248 257-344 (511)
293 2bbw_A Adenylate kinase 4, AK4 97.0 0.00032 1.1E-08 63.9 3.7 29 177-205 26-54 (246)
294 2v54_A DTMP kinase, thymidylat 97.0 0.00039 1.3E-08 61.0 4.0 33 177-209 3-36 (204)
295 3dm5_A SRP54, signal recogniti 97.0 0.0036 1.2E-07 62.1 11.3 75 177-251 99-196 (443)
296 2wwf_A Thymidilate kinase, put 97.0 0.00034 1.2E-08 61.7 3.6 33 177-209 9-41 (212)
297 3cmw_A Protein RECA, recombina 97.0 0.00094 3.2E-08 76.1 7.9 80 174-253 1427-1525(1706)
298 3sr0_A Adenylate kinase; phosp 97.0 0.00031 1.1E-08 62.7 3.1 28 180-207 2-29 (206)
299 2qt1_A Nicotinamide riboside k 97.0 0.00037 1.3E-08 61.6 3.5 33 175-207 18-51 (207)
300 1znw_A Guanylate kinase, GMP k 97.0 0.0004 1.4E-08 61.6 3.8 29 174-202 16-44 (207)
301 3asz_A Uridine kinase; cytidin 97.0 0.00041 1.4E-08 61.4 3.8 32 176-207 4-37 (211)
302 2r6f_A Excinuclease ABC subuni 97.0 0.0014 4.7E-08 70.8 8.4 60 224-283 850-915 (972)
303 4e22_A Cytidylate kinase; P-lo 97.0 0.00039 1.3E-08 63.9 3.7 32 176-207 25-56 (252)
304 1kgd_A CASK, peripheral plasma 97.0 0.00046 1.6E-08 59.8 4.0 26 177-202 4-29 (180)
305 2if2_A Dephospho-COA kinase; a 97.0 0.00028 9.7E-09 62.1 2.6 29 180-209 3-31 (204)
306 2v9p_A Replication protein E1; 97.0 0.00043 1.5E-08 65.5 3.9 31 172-202 120-150 (305)
307 1e4v_A Adenylate kinase; trans 97.0 0.00032 1.1E-08 62.4 2.9 30 180-209 2-31 (214)
308 1nks_A Adenylate kinase; therm 97.0 0.00033 1.1E-08 60.6 2.8 24 180-203 3-26 (194)
309 1nn5_A Similar to deoxythymidy 96.9 0.00047 1.6E-08 60.9 3.8 32 177-208 8-39 (215)
310 2jaq_A Deoxyguanosine kinase; 96.9 0.00044 1.5E-08 60.4 3.3 28 180-207 2-29 (205)
311 2yhs_A FTSY, cell division pro 96.9 0.0048 1.6E-07 62.0 11.0 30 173-202 288-317 (503)
312 3d8b_A Fidgetin-like protein 1 96.9 0.00014 4.7E-09 70.5 -0.2 76 10-102 220-302 (357)
313 1uf9_A TT1252 protein; P-loop, 96.9 0.00047 1.6E-08 60.3 3.2 31 177-208 7-37 (203)
314 2pbr_A DTMP kinase, thymidylat 96.9 0.00045 1.5E-08 59.9 3.1 31 180-210 2-35 (195)
315 3b9q_A Chloroplast SRP recepto 96.9 0.0011 3.8E-08 62.6 5.9 31 172-202 94-124 (302)
316 3c8u_A Fructokinase; YP_612366 96.9 0.00051 1.8E-08 60.9 3.3 28 176-203 20-47 (208)
317 2plr_A DTMP kinase, probable t 96.9 0.00061 2.1E-08 59.9 3.8 27 178-204 4-30 (213)
318 3r20_A Cytidylate kinase; stru 96.9 0.00054 1.9E-08 62.3 3.5 31 177-207 8-38 (233)
319 1jjv_A Dephospho-COA kinase; P 96.9 0.00039 1.3E-08 61.3 2.5 27 180-207 4-30 (206)
320 3lnc_A Guanylate kinase, GMP k 96.8 0.00036 1.2E-08 62.9 2.1 31 172-202 21-52 (231)
321 3tau_A Guanylate kinase, GMP k 96.8 0.00068 2.3E-08 60.2 3.9 28 176-203 6-33 (208)
322 1lvg_A Guanylate kinase, GMP k 96.8 0.00055 1.9E-08 60.4 3.3 26 177-202 3-28 (198)
323 2xb4_A Adenylate kinase; ATP-b 96.8 0.00046 1.6E-08 62.0 2.8 30 180-209 2-31 (223)
324 1ls1_A Signal recognition part 96.8 0.0045 1.5E-07 58.2 9.6 76 177-252 97-196 (295)
325 2r8r_A Sensor protein; KDPD, P 96.8 0.0012 4.1E-08 59.6 5.2 24 179-202 7-30 (228)
326 3zvl_A Bifunctional polynucleo 96.8 0.0015 5.2E-08 64.4 6.4 34 176-209 256-289 (416)
327 2c9o_A RUVB-like 1; hexameric 96.8 0.00013 4.3E-09 73.1 -1.5 67 10-96 189-261 (456)
328 2qor_A Guanylate kinase; phosp 96.8 0.00078 2.7E-08 59.5 3.8 28 176-203 10-37 (204)
329 2grj_A Dephospho-COA kinase; T 96.8 0.00057 2E-08 60.2 2.8 31 178-208 12-42 (192)
330 2z0h_A DTMP kinase, thymidylat 96.8 0.00063 2.1E-08 59.2 3.1 30 180-209 2-34 (197)
331 3b9p_A CG5977-PA, isoform A; A 96.8 0.00021 7.3E-09 66.8 0.0 77 10-103 158-241 (297)
332 3a8t_A Adenylate isopentenyltr 96.8 0.00078 2.7E-08 64.5 3.8 35 177-211 39-73 (339)
333 3ake_A Cytidylate kinase; CMP 96.7 0.00062 2.1E-08 59.8 2.9 29 180-208 4-32 (208)
334 1uj2_A Uridine-cytidine kinase 96.7 0.0011 3.7E-08 60.6 4.6 30 177-206 21-50 (252)
335 2r6a_A DNAB helicase, replicat 96.7 0.0023 7.9E-08 63.8 7.3 29 173-201 198-226 (454)
336 2og2_A Putative signal recogni 96.7 0.0015 5E-08 63.3 5.6 31 172-202 151-181 (359)
337 3a00_A Guanylate kinase, GMP k 96.7 0.00086 3E-08 58.3 3.5 26 178-203 1-26 (186)
338 2px0_A Flagellar biosynthesis 96.7 0.002 6.7E-08 60.7 6.1 27 176-202 103-129 (296)
339 3e70_C DPA, signal recognition 96.7 0.003 1E-07 60.4 7.5 27 176-202 127-153 (328)
340 3aez_A Pantothenate kinase; tr 96.7 0.0018 6.2E-08 61.5 5.8 28 175-202 87-114 (312)
341 1q3t_A Cytidylate kinase; nucl 96.7 0.0009 3.1E-08 60.5 3.5 33 176-208 14-46 (236)
342 2bdt_A BH3686; alpha-beta prot 96.7 0.00074 2.5E-08 58.6 2.8 25 179-203 3-27 (189)
343 1vht_A Dephospho-COA kinase; s 96.7 0.00087 3E-08 59.6 3.3 31 177-208 3-33 (218)
344 2yvu_A Probable adenylyl-sulfa 96.7 0.0011 3.8E-08 57.4 3.9 28 176-203 11-38 (186)
345 3foz_A TRNA delta(2)-isopenten 96.6 0.0012 4E-08 62.5 4.1 36 177-212 9-44 (316)
346 3ney_A 55 kDa erythrocyte memb 96.6 0.0013 4.3E-08 58.3 4.0 32 172-203 13-44 (197)
347 2fz4_A DNA repair protein RAD2 96.6 0.0043 1.5E-07 56.2 7.7 29 179-207 109-137 (237)
348 2zts_A Putative uncharacterize 96.6 0.0023 8E-08 57.5 5.8 27 174-200 26-52 (251)
349 1z6t_A APAF-1, apoptotic prote 96.6 0.005 1.7E-07 63.1 8.9 47 144-201 124-170 (591)
350 3exa_A TRNA delta(2)-isopenten 96.5 0.0016 5.6E-08 61.6 4.3 35 178-212 3-37 (322)
351 1ltq_A Polynucleotide kinase; 96.5 0.0011 3.7E-08 62.0 3.0 30 179-208 3-33 (301)
352 2qm8_A GTPase/ATPase; G protei 96.5 0.0059 2E-07 58.5 8.2 30 173-202 50-79 (337)
353 1rz3_A Hypothetical protein rb 96.5 0.0022 7.4E-08 56.5 4.6 28 175-202 19-46 (201)
354 2f6r_A COA synthase, bifunctio 96.5 0.0012 4E-08 61.7 3.0 31 177-208 74-104 (281)
355 2h92_A Cytidylate kinase; ross 96.5 0.0012 4.3E-08 58.5 3.1 31 178-208 3-33 (219)
356 1zu4_A FTSY; GTPase, signal re 96.4 0.0072 2.4E-07 57.5 8.2 29 174-202 101-129 (320)
357 3d3q_A TRNA delta(2)-isopenten 96.4 0.0017 5.9E-08 62.2 3.6 32 179-210 8-39 (340)
358 1x6v_B Bifunctional 3'-phospho 96.4 0.0043 1.5E-07 64.2 6.8 36 177-212 51-89 (630)
359 2qmh_A HPR kinase/phosphorylas 96.4 0.0014 4.8E-08 58.0 2.7 36 177-213 33-68 (205)
360 3dzd_A Transcriptional regulat 96.4 0.0034 1.2E-07 60.9 5.7 81 177-262 151-246 (368)
361 1odf_A YGR205W, hypothetical 3 96.4 0.003 1E-07 59.2 5.0 28 176-203 29-56 (290)
362 3e1s_A Exodeoxyribonuclease V, 96.4 0.0027 9.3E-08 65.3 5.1 25 178-202 204-228 (574)
363 3vfd_A Spastin; ATPase, microt 96.3 0.00063 2.1E-08 66.4 -0.0 76 10-102 251-333 (389)
364 2q6t_A DNAB replication FORK h 96.3 0.009 3.1E-07 59.3 8.2 29 173-201 195-223 (444)
365 2axn_A 6-phosphofructo-2-kinas 96.3 0.0089 3E-07 60.7 8.1 30 177-206 34-63 (520)
366 1sq5_A Pantothenate kinase; P- 96.2 0.0027 9.1E-08 60.0 3.9 28 176-203 78-105 (308)
367 1ex7_A Guanylate kinase; subst 96.2 0.0027 9.3E-08 55.6 3.7 23 180-202 3-25 (186)
368 3eph_A TRNA isopentenyltransfe 96.2 0.0028 9.6E-08 62.1 3.9 33 178-210 2-34 (409)
369 4eaq_A DTMP kinase, thymidylat 96.2 0.0032 1.1E-07 56.8 4.1 28 176-203 24-51 (229)
370 2j37_W Signal recognition part 96.1 0.012 4.2E-07 59.3 8.3 75 176-250 99-196 (504)
371 3upu_A ATP-dependent DNA helic 96.1 0.0064 2.2E-07 60.7 6.2 59 132-203 12-70 (459)
372 1w36_D RECD, exodeoxyribonucle 96.1 0.012 4E-07 61.0 8.3 25 178-202 164-188 (608)
373 3kta_A Chromosome segregation 96.1 0.0035 1.2E-07 53.9 3.5 28 175-203 24-51 (182)
374 1lw7_A Transcriptional regulat 96.0 0.0032 1.1E-07 60.9 3.5 33 171-203 161-195 (365)
375 3gmt_A Adenylate kinase; ssgci 96.0 0.003 1E-07 57.2 3.1 32 178-209 8-39 (230)
376 3fdi_A Uncharacterized protein 96.0 0.0029 1E-07 55.9 2.9 30 179-208 7-36 (201)
377 1j8m_F SRP54, signal recogniti 96.0 0.0078 2.7E-07 56.6 5.9 73 178-250 98-193 (297)
378 3vkg_A Dynein heavy chain, cyt 96.0 0.007 2.4E-07 72.8 6.7 66 178-250 604-669 (3245)
379 1c9k_A COBU, adenosylcobinamid 96.0 0.0059 2E-07 53.1 4.6 32 181-213 2-33 (180)
380 2gj8_A MNME, tRNA modification 96.0 0.012 4.1E-07 50.0 6.4 25 177-201 3-27 (172)
381 2xau_A PRE-mRNA-splicing facto 95.9 0.01 3.5E-07 63.2 7.1 56 145-201 76-132 (773)
382 1gtv_A TMK, thymidylate kinase 95.9 0.0019 6.6E-08 56.9 1.3 24 180-203 2-25 (214)
383 3sfz_A APAF-1, apoptotic pepti 95.8 0.021 7E-07 63.3 9.1 47 144-201 124-170 (1249)
384 2obl_A ESCN; ATPase, hydrolase 95.8 0.0044 1.5E-07 59.7 3.2 31 173-203 66-96 (347)
385 2dpy_A FLII, flagellum-specifi 95.8 0.0053 1.8E-07 61.0 3.7 31 173-203 152-182 (438)
386 2qag_B Septin-6, protein NEDD5 95.7 0.0045 1.5E-07 61.2 3.1 30 172-201 34-65 (427)
387 3sop_A Neuronal-specific septi 95.7 0.005 1.7E-07 57.1 3.2 22 180-201 4-25 (270)
388 1g5t_A COB(I)alamin adenosyltr 95.7 0.018 6.1E-07 50.7 6.5 24 178-201 28-51 (196)
389 3tqc_A Pantothenate kinase; bi 95.7 0.0064 2.2E-07 57.9 3.9 27 177-203 91-117 (321)
390 3tqf_A HPR(Ser) kinase; transf 95.7 0.0062 2.1E-07 52.6 3.3 25 177-201 15-39 (181)
391 2xxa_A Signal recognition part 95.7 0.018 6.2E-07 57.0 7.2 75 176-250 98-196 (433)
392 2ffh_A Protein (FFH); SRP54, s 95.7 0.032 1.1E-06 55.1 8.9 26 177-202 97-122 (425)
393 1a7j_A Phosphoribulokinase; tr 95.7 0.0031 1.1E-07 59.1 1.6 26 178-203 5-30 (290)
394 1bif_A 6-phosphofructo-2-kinas 95.6 0.026 8.9E-07 56.4 8.3 30 177-206 38-67 (469)
395 3bh0_A DNAB-like replicative h 95.6 0.0079 2.7E-07 57.0 4.2 30 173-202 63-92 (315)
396 2v3c_C SRP54, signal recogniti 95.6 0.011 3.8E-07 58.6 5.4 26 177-202 98-123 (432)
397 1pui_A ENGB, probable GTP-bind 95.6 0.0046 1.6E-07 54.1 2.3 31 172-202 20-50 (210)
398 1w4r_A Thymidine kinase; type 95.6 0.015 5E-07 51.2 5.4 93 176-274 18-125 (195)
399 3szr_A Interferon-induced GTP- 95.6 0.013 4.4E-07 60.7 6.0 22 181-202 48-69 (608)
400 2a5y_B CED-4; apoptosis; HET: 95.6 0.029 9.8E-07 57.2 8.5 43 148-200 132-174 (549)
401 1sky_E F1-ATPase, F1-ATP synth 95.6 0.012 4.2E-07 58.6 5.5 27 177-203 150-176 (473)
402 3cr8_A Sulfate adenylyltranfer 95.6 0.0051 1.8E-07 62.9 2.8 29 175-203 366-394 (552)
403 3bgw_A DNAB-like replicative h 95.5 0.031 1.1E-06 55.5 8.2 29 174-202 193-221 (444)
404 2vp4_A Deoxynucleoside kinase; 95.5 0.0056 1.9E-07 55.0 2.5 27 175-201 17-43 (230)
405 2f1r_A Molybdopterin-guanine d 95.4 0.0056 1.9E-07 52.8 2.3 25 179-203 3-27 (171)
406 3p32_A Probable GTPase RV1496/ 95.4 0.028 9.7E-07 54.0 7.5 26 177-202 78-103 (355)
407 1np6_A Molybdopterin-guanine d 95.4 0.0099 3.4E-07 51.3 3.8 26 177-202 5-30 (174)
408 3hdt_A Putative kinase; struct 95.4 0.0071 2.4E-07 54.4 2.9 31 178-208 14-44 (223)
409 3k53_A Ferrous iron transport 95.4 0.015 5.2E-07 53.5 5.1 23 179-201 4-26 (271)
410 3euj_A Chromosome partition pr 95.4 0.0084 2.9E-07 60.2 3.5 31 172-203 24-54 (483)
411 1nij_A Hypothetical protein YJ 95.3 0.02 6.7E-07 54.2 5.9 24 179-202 5-28 (318)
412 1p5z_B DCK, deoxycytidine kina 95.3 0.0045 1.6E-07 56.8 1.3 31 176-206 22-53 (263)
413 3b6e_A Interferon-induced heli 95.3 0.019 6.3E-07 50.2 5.1 24 178-201 48-71 (216)
414 2p67_A LAO/AO transport system 95.2 0.033 1.1E-06 53.2 7.2 28 175-202 53-80 (341)
415 2f9l_A RAB11B, member RAS onco 95.2 0.011 3.7E-07 51.4 3.4 23 179-201 6-28 (199)
416 2ocp_A DGK, deoxyguanosine kin 95.2 0.011 3.8E-07 53.3 3.5 25 178-202 2-26 (241)
417 1oix_A RAS-related protein RAB 95.2 0.01 3.4E-07 51.4 3.1 24 179-202 30-53 (191)
418 1xjc_A MOBB protein homolog; s 95.1 0.014 4.6E-07 50.3 3.7 25 178-202 4-28 (169)
419 4edh_A DTMP kinase, thymidylat 95.1 0.013 4.5E-07 52.2 3.7 27 177-203 5-31 (213)
420 3iby_A Ferrous iron transport 95.1 0.023 8E-07 52.0 5.5 22 180-201 3-24 (256)
421 1f2t_A RAD50 ABC-ATPase; DNA d 95.1 0.013 4.6E-07 49.0 3.4 25 178-202 23-47 (149)
422 2ged_A SR-beta, signal recogni 95.1 0.025 8.5E-07 48.5 5.2 27 176-202 46-72 (193)
423 1ni3_A YCHF GTPase, YCHF GTP-b 95.0 0.014 4.6E-07 57.2 3.6 26 175-200 17-42 (392)
424 1vt4_I APAF-1 related killer D 94.9 0.055 1.9E-06 59.1 8.5 43 147-201 131-173 (1221)
425 2orw_A Thymidine kinase; TMTK, 94.9 0.017 5.7E-07 50.3 3.8 24 178-201 3-26 (184)
426 1m8p_A Sulfate adenylyltransfe 94.9 0.012 3.9E-07 60.6 3.1 36 177-212 395-434 (573)
427 2qtf_A Protein HFLX, GTP-bindi 94.9 0.048 1.6E-06 52.7 7.2 22 180-201 181-202 (364)
428 3tmk_A Thymidylate kinase; pho 94.9 0.018 6.1E-07 51.5 3.8 28 177-204 4-31 (216)
429 2rcn_A Probable GTPase ENGC; Y 94.9 0.015 5.2E-07 56.1 3.5 27 177-203 214-240 (358)
430 3b1v_A Ferrous iron uptake tra 94.9 0.027 9.2E-07 52.1 5.1 23 179-201 4-26 (272)
431 3v9p_A DTMP kinase, thymidylat 94.8 0.013 4.6E-07 52.8 3.0 29 176-204 23-51 (227)
432 3a1s_A Iron(II) transport prot 94.8 0.031 1.1E-06 51.2 5.5 23 179-201 6-28 (258)
433 4b3f_X DNA-binding protein smu 94.8 0.028 9.7E-07 58.5 5.8 20 179-198 206-225 (646)
434 2wji_A Ferrous iron transport 94.8 0.016 5.4E-07 48.7 3.1 23 179-201 4-26 (165)
435 4i1u_A Dephospho-COA kinase; s 94.8 0.014 4.6E-07 52.1 2.7 31 179-210 10-40 (210)
436 3lv8_A DTMP kinase, thymidylat 94.8 0.018 6.2E-07 52.2 3.6 27 177-203 26-52 (236)
437 1nrj_B SR-beta, signal recogni 94.7 0.022 7.4E-07 50.0 3.9 26 177-202 11-36 (218)
438 4a1f_A DNAB helicase, replicat 94.7 0.021 7.2E-07 54.7 4.0 28 174-201 42-69 (338)
439 3ld9_A DTMP kinase, thymidylat 94.6 0.022 7.5E-07 51.2 3.8 29 176-204 19-47 (223)
440 2dyk_A GTP-binding protein; GT 94.6 0.02 6.7E-07 47.3 3.3 22 180-201 3-24 (161)
441 3ice_A Transcription terminati 94.6 0.021 7.1E-07 55.6 3.8 30 173-202 169-198 (422)
442 2yv5_A YJEQ protein; hydrolase 94.6 0.02 6.7E-07 53.9 3.6 26 177-203 164-189 (302)
443 2zej_A Dardarin, leucine-rich 94.6 0.016 5.5E-07 49.6 2.7 22 180-201 4-25 (184)
444 1tq4_A IIGP1, interferon-induc 94.5 0.0097 3.3E-07 58.6 1.3 24 177-200 68-91 (413)
445 1t9h_A YLOQ, probable GTPase E 94.5 0.0079 2.7E-07 56.9 0.6 28 175-202 170-197 (307)
446 2p5s_A RAS and EF-hand domain 94.5 0.021 7.3E-07 49.4 3.4 28 174-201 24-51 (199)
447 1z2a_A RAS-related protein RAB 94.5 0.021 7.3E-07 47.3 3.2 23 179-201 6-28 (168)
448 2ce2_X GTPase HRAS; signaling 94.5 0.021 7.3E-07 47.0 3.2 22 180-201 5-26 (166)
449 4tmk_A Protein (thymidylate ki 94.5 0.023 8E-07 50.6 3.6 26 178-203 3-28 (213)
450 1kao_A RAP2A; GTP-binding prot 94.4 0.024 8.1E-07 46.8 3.4 23 179-201 4-26 (167)
451 1u0l_A Probable GTPase ENGC; p 94.4 0.018 6.1E-07 54.1 2.8 26 177-202 168-193 (301)
452 1g8f_A Sulfate adenylyltransfe 94.4 0.02 7E-07 57.8 3.3 28 177-204 394-421 (511)
453 2lkc_A Translation initiation 94.4 0.029 1E-06 47.1 3.9 26 176-201 6-31 (178)
454 1u8z_A RAS-related protein RAL 94.4 0.025 8.4E-07 46.8 3.4 23 179-201 5-27 (168)
455 2wjg_A FEOB, ferrous iron tran 94.4 0.023 7.9E-07 48.4 3.2 23 179-201 8-30 (188)
456 1svi_A GTP-binding protein YSX 94.3 0.032 1.1E-06 47.7 4.1 26 176-201 21-46 (195)
457 1ek0_A Protein (GTP-binding pr 94.3 0.025 8.7E-07 46.9 3.4 22 180-201 5-26 (170)
458 2nzj_A GTP-binding protein REM 94.3 0.025 8.4E-07 47.4 3.2 23 179-201 5-27 (175)
459 1z0j_A RAB-22, RAS-related pro 94.3 0.026 8.9E-07 46.9 3.3 24 179-202 7-30 (170)
460 3i8s_A Ferrous iron transport 94.3 0.052 1.8E-06 50.1 5.6 23 179-201 4-26 (274)
461 2www_A Methylmalonic aciduria 94.2 0.027 9.2E-07 54.1 3.7 26 177-202 73-98 (349)
462 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.027 9.2E-07 47.3 3.3 23 179-201 8-30 (177)
463 1z08_A RAS-related protein RAB 94.2 0.027 9.3E-07 46.8 3.3 23 179-201 7-29 (170)
464 2ohf_A Protein OLA1, GTP-bindi 94.2 0.027 9.3E-07 55.0 3.6 26 176-201 20-45 (396)
465 3vkg_A Dynein heavy chain, cyt 94.2 0.13 4.4E-06 62.2 9.9 70 176-247 1644-1714(3245)
466 1upt_A ARL1, ADP-ribosylation 94.2 0.034 1.2E-06 46.3 3.8 25 177-201 6-30 (171)
467 2erx_A GTP-binding protein DI- 94.2 0.027 9.4E-07 46.8 3.2 23 179-201 4-26 (172)
468 1ky3_A GTP-binding protein YPT 94.2 0.028 9.7E-07 47.2 3.3 25 177-201 7-31 (182)
469 1g16_A RAS-related protein SEC 94.1 0.028 9.7E-07 46.7 3.3 23 179-201 4-26 (170)
470 3q85_A GTP-binding protein REM 94.1 0.028 9.7E-07 46.8 3.2 21 180-200 4-24 (169)
471 3iev_A GTP-binding protein ERA 94.1 0.17 5.8E-06 47.4 9.0 26 176-201 8-33 (308)
472 3q72_A GTP-binding protein RAD 94.1 0.026 9E-07 46.8 2.9 21 180-200 4-24 (166)
473 3qks_A DNA double-strand break 94.1 0.03 1E-06 49.3 3.4 26 178-203 23-48 (203)
474 1c1y_A RAS-related protein RAP 94.0 0.031 1.1E-06 46.3 3.2 23 179-201 4-26 (167)
475 2o5v_A DNA replication and rep 94.0 0.024 8.3E-07 54.7 2.9 28 174-202 23-50 (359)
476 3lxw_A GTPase IMAP family memb 94.0 0.03 1E-06 50.9 3.3 25 177-201 20-44 (247)
477 1r2q_A RAS-related protein RAB 94.0 0.033 1.1E-06 46.2 3.4 23 179-201 7-29 (170)
478 2hxs_A RAB-26, RAS-related pro 94.0 0.033 1.1E-06 46.8 3.4 24 178-201 6-29 (178)
479 3bc1_A RAS-related protein RAB 94.0 0.033 1.1E-06 47.3 3.4 24 178-201 11-34 (195)
480 1r8s_A ADP-ribosylation factor 93.9 0.035 1.2E-06 45.9 3.5 22 180-201 2-23 (164)
481 2b6h_A ADP-ribosylation factor 93.9 0.041 1.4E-06 47.4 4.0 30 171-200 22-51 (192)
482 2atv_A RERG, RAS-like estrogen 93.9 0.036 1.2E-06 47.7 3.6 25 177-201 27-51 (196)
483 1w1w_A Structural maintenance 93.9 0.037 1.3E-06 54.6 3.9 29 175-203 23-51 (430)
484 4dsu_A GTPase KRAS, isoform 2B 93.8 0.036 1.2E-06 47.0 3.3 23 179-201 5-27 (189)
485 2fn4_A P23, RAS-related protei 93.8 0.035 1.2E-06 46.6 3.2 24 178-201 9-32 (181)
486 1q57_A DNA primase/helicase; d 93.8 0.033 1.1E-06 56.1 3.6 29 174-202 238-266 (503)
487 3tw8_B RAS-related protein RAB 93.8 0.033 1.1E-06 46.8 3.0 24 178-201 9-32 (181)
488 2y8e_A RAB-protein 6, GH09086P 93.8 0.034 1.2E-06 46.6 3.1 23 179-201 15-37 (179)
489 1z0f_A RAB14, member RAS oncog 93.8 0.037 1.3E-06 46.3 3.4 24 178-201 15-38 (179)
490 3clv_A RAB5 protein, putative; 93.7 0.046 1.6E-06 46.7 3.9 25 177-201 6-30 (208)
491 1moz_A ARL1, ADP-ribosylation 93.7 0.037 1.3E-06 46.7 3.3 25 176-200 16-40 (183)
492 1qhl_A Protein (cell division 93.7 0.013 4.4E-07 52.9 0.3 24 180-203 29-52 (227)
493 2oil_A CATX-8, RAS-related pro 93.7 0.039 1.3E-06 47.3 3.4 23 179-201 26-48 (193)
494 1ko7_A HPR kinase/phosphatase; 93.7 0.038 1.3E-06 52.2 3.5 25 177-201 143-167 (314)
495 2wsm_A Hydrogenase expression/ 93.7 0.04 1.4E-06 48.4 3.5 26 177-202 29-54 (221)
496 2a9k_A RAS-related protein RAL 93.7 0.038 1.3E-06 46.6 3.2 24 178-201 18-41 (187)
497 2cxx_A Probable GTP-binding pr 93.7 0.035 1.2E-06 47.2 3.0 22 180-201 3-24 (190)
498 4dcu_A GTP-binding protein ENG 93.6 0.2 6.7E-06 49.7 8.9 23 179-201 24-46 (456)
499 2bme_A RAB4A, RAS-related prot 93.6 0.039 1.3E-06 46.8 3.2 24 178-201 10-33 (186)
500 3con_A GTPase NRAS; structural 93.6 0.039 1.3E-06 47.1 3.2 23 179-201 22-44 (190)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.5e-49 Score=419.91 Aligned_cols=358 Identities=22% Similarity=0.347 Sum_probs=237.6
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|.+.-.++|+||++|||++.+|+||+| ||||+ +|++|. +.++|++||++ +++.+++|+ +
T Consensus 333 dg~~~~~~V~VIaaTN~~d~LD~ALrR--------------~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl-~ 397 (806)
T 3cf2_A 333 DGLKQRAHVIVMAATNRPNSIDPALRR--------------FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-E 397 (806)
T ss_dssp HHCCGGGCEEEEEECSSTTTSCTTTTS--------------TTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH-H
T ss_pred hcccccCCEEEEEecCChhhcCHHHhC--------------CcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH-H
Confidence 344456889999999999999999988 99999 777777 47789999987 567889999 8
Q ss_pred HHHHhhcCCccccccccccccchhhhcCCCC--CCCCCCC--------------------CchhhHhhhcccccCccccc
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIELREGGQR--NGGEGGI--------------------GLNERVQRIGEGREERRDWE 135 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~~~~~~~~--~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 135 (390)
.||+.|+||+|+||..+|.++++.+..+... ....... ...+...+....+.+++.|+
T Consensus 398 ~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~ 477 (806)
T 3cf2_A 398 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477 (806)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCST
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHH
Confidence 9999999999999999999998764322100 0000000 01112233344556677777
Q ss_pred cccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc
Q psy11689 136 GEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY 215 (390)
Q Consensus 136 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~ 215 (390)
+++|++++|+.+.+.+.+|+++++.|.++++.+++++|||||||||||++|+++|.+++.+|+.+++++++
T Consensus 478 ---------diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 478 ---------DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp ---------TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ---------HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH-----HHHHhhcCCCcE---EEeccCHHHHHhcCchhH
Q psy11689 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ-----TADNAKKPRIPR---TNGGYREQTADTANKPRI 287 (390)
Q Consensus 216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~-----~~~~~~~~~~~~---i~~~~~~~~i~~t~~~~~ 287 (390)
++|+|+++++++.+|..|+..+||||||||+|+++..|.... ..+.+.+..++. +....++.++++||+|+.
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 999999999999999999999999999999999998874321 111111111100 112345667889998876
Q ss_pred HHhH-----HHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc--
Q psy11689 288 QRTK-----REY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY-- 357 (390)
Q Consensus 288 ~r~~-----~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~-- 357 (390)
+.+. ++. ...+|+...|..|+..... +.....++|+..||+.|+||| ||||+++|++|++.|+++..
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~-~~~~~~~~dl~~la~~t~g~S--Gadi~~l~~~A~~~a~r~~~~~ 705 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR-KSPVAKDVDLEFLAKMTNGFS--GADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS-CC--CCC------------------CHHHHHHHHHHHHHHHHHC-
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc-CCCCCCCCCHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 4333 322 1125667788888643322 222367899999999999999 99999999999999987632
Q ss_pred -----------------------cccChhhhhhhHHHHhcCccccccCCCcccc
Q psy11689 358 -----------------------REQTADTANKPRIQRIGNLSQRNRSSPKKVS 388 (390)
Q Consensus 358 -----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
..|+++||.++.-+.-=+.++.+.-.|+++.
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~ 759 (806)
T 3cf2_A 706 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759 (806)
T ss_dssp ----------------------CCC----CCTTTC---------------CCCC
T ss_pred hhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 2589999999987777777777777776654
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-39 Score=316.17 Aligned_cols=241 Identities=22% Similarity=0.323 Sum_probs=193.8
Q ss_pred hhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 122 QRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
......+.|++.|+ ||||++++++++++.+.+|+++|+.|+++++++++|+|||||||||||+||+++|++
T Consensus 135 ~~~~~~~~p~v~~~---------dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 135 SLMMVEKVPDSTYD---------MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp TSCEEECSCSCCGG---------GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred hhccccCCCCCCHH---------HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34445567788888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEe
Q psy11689 202 SVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNG 272 (390)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~ 272 (390)
++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+++..|.. ......+... +--+..
T Consensus 206 ~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-lDg~~~ 284 (405)
T 4b4t_J 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ-LDGFET 284 (405)
T ss_dssp HTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH-HHTTTC
T ss_pred hCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh-hhccCC
Confidence 999999999999999999999999999999999999999999999999976521 1111111110 000012
Q ss_pred ccCHHHHHhcCchhHHHhHH-----Hhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHH
Q psy11689 273 GYREQTADTANKPRIQRTKR-----EYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANT 344 (390)
Q Consensus 273 ~~~~~~i~~t~~~~~~r~~~-----~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l 344 (390)
..++.++++||+|+.+.+.+ +.. ..+|+...|..|+..... .....+++|+..||++|+||| ||||+++
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~~~l~~dvdl~~lA~~t~G~S--GADi~~l 361 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR-KMNLTRGINLRKVAEKMNGCS--GADVKGV 361 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-TSBCCSSCCHHHHHHHCCSCC--HHHHHHH
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc-CCCCCccCCHHHHHHHCCCCC--HHHHHHH
Confidence 34456788999887654433 221 125677788888633221 223357799999999999999 9999999
Q ss_pred HHHHHHHHHHccccccChhhhhhhHHHHhcC
Q psy11689 345 ANKPRIQRTKREYREQTADTANKPRIQRIGN 375 (390)
Q Consensus 345 ~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~ 375 (390)
|++|++.|+++++..|+++||.+|+-+.+-+
T Consensus 362 ~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 362 CTEAGMYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 9999999999999999999999998665543
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=306.82 Aligned_cols=241 Identities=21% Similarity=0.324 Sum_probs=193.5
Q ss_pred ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
+.++++|+ ||||+++++++|.+.+.+|+++++.|+.+++++++|+|||||||||||+||+++|++++.+|+
T Consensus 175 ~~p~v~~~---------DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi 245 (437)
T 4b4t_I 175 KSPTESYS---------DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL 245 (437)
T ss_dssp SSCCCCGG---------GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred cCCCCcce---------ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE
Confidence 44555666 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHH
Q psy11689 208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQT 278 (390)
Q Consensus 208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~ 278 (390)
.++++++.+.|+|++++.++.+|..|+..+||||||||+|+++..|... .....+... +-......++.+
T Consensus 246 ~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~-lDg~~~~~~ViV 324 (437)
T 4b4t_I 246 RIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ-LDGFDDRGDVKV 324 (437)
T ss_dssp EEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH-HHHCCCSSSEEE
T ss_pred EEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH-hhCcCCCCCEEE
Confidence 9999999999999999999999999999999999999999999766211 111111100 000112234566
Q ss_pred HHhcCchhHH-----HhHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689 279 ADTANKPRIQ-----RTKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI 350 (390)
Q Consensus 279 i~~t~~~~~~-----r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~ 350 (390)
|+|||+|+.+ |+.++. ...+|+...|..|+..... .....+++|++.||+.|+||| ||||+++|++|++
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfS--GADI~~l~~eA~~ 401 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLS--GADIQAMCTEAGL 401 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCC--HHHHHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCC--HHHHHHHHHHHHH
Confidence 8888987764 333432 2236677888888633221 223357799999999999999 9999999999999
Q ss_pred HHHHccccccChhhhhhhHHHHhcCcccccc
Q psy11689 351 QRTKREYREQTADTANKPRIQRIGNLSQRNR 381 (390)
Q Consensus 351 ~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~ 381 (390)
.|+++++..|+++||.+|+.+..-+..+++.
T Consensus 402 ~Air~~~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 402 LALRERRMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHcCCCccCHHHHHHHHHHHhCCCChhhH
Confidence 9999999999999999999777666555543
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=308.69 Aligned_cols=237 Identities=22% Similarity=0.287 Sum_probs=189.9
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~ 219 (390)
.++++||||+++++++|++.+.+|+.+++.|+.+++.+++|+|||||||||||+||+++|++++.+|+.++++++.+.|+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 34444999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHh
Q psy11689 220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQTADTANKPRIQRT 290 (390)
Q Consensus 220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~ 290 (390)
|++++.++.+|..|+..+||||||||+|+++..|... .....+.. .+-......++.+|++||+|+.+.+
T Consensus 285 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~-~lDg~~~~~~ViVIaATNrpd~LDp 363 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT-QLDGFDPRGNIKVMFATNRPNTLDP 363 (467)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH-HHHSSCCTTTEEEEEECSCTTSBCH
T ss_pred CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHH-HhhccCCCCcEEEEeCCCCcccCCh
Confidence 9999999999999999999999999999999765221 11111100 0000112234556888998776433
Q ss_pred H-----HHhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccCh
Q psy11689 291 K-----REYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTA 362 (390)
Q Consensus 291 ~-----~~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~ 362 (390)
. ++.. ..+|+...|..|+..... ......++|++.||++|+||| ||||+++|++|++.|+++++..+++
T Consensus 364 ALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~-~~~l~~dvdl~~LA~~T~GfS--GADI~~l~~eAa~~Air~~~~~it~ 440 (467)
T 4b4t_H 364 ALLRPGRIDRKVEFSLPDLEGRANIFRIHSK-SMSVERGIRWELISRLCPNST--GAELRSVCTEAGMFAIRARRKVATE 440 (467)
T ss_dssp HHHSTTTCCEEECCCCCCHHHHHHHHHHHHT-TSCBCSSCCHHHHHHHCCSCC--HHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred hhhccccccEEEEeCCcCHHHHHHHHHHHhc-CCCCCCCCCHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHcCCCccCH
Confidence 3 3222 125677788888633221 123356799999999999999 9999999999999999999999999
Q ss_pred hhhhhhHHHHhcCccccc
Q psy11689 363 DTANKPRIQRIGNLSQRN 380 (390)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ 380 (390)
+||.+++-+.+.|..++.
T Consensus 441 ~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 441 KDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp HHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhcCcccch
Confidence 999999988888876543
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=309.55 Aligned_cols=242 Identities=21% Similarity=0.303 Sum_probs=186.0
Q ss_pred CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689 141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG 220 (390)
Q Consensus 141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g 220 (390)
++++||||+++++++|.+.+.+|+++|+.|..+++.+++|+|||||||||||+||+++|++++.+|+.++++++.++|.|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 33339999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHHHHhcCchhHHH--
Q psy11689 221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQTADTANKPRIQR-- 289 (390)
Q Consensus 221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r-- 289 (390)
++++.++.+|..|+..+||||||||+|+++..|... .....+... +--.....++.+|++||+|+.+.
T Consensus 258 ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-lDg~~~~~~vivI~ATNrp~~LDpA 336 (437)
T 4b4t_L 258 ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ-MDGFDNLGQTKIIMATNRPDTLDPA 336 (437)
T ss_dssp HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH-HHSSSCTTSSEEEEEESSTTSSCTT
T ss_pred HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHH-hhcccCCCCeEEEEecCCchhhCHH
Confidence 999999999999999999999999999999765221 111111110 00001123455678888877643
Q ss_pred ---hHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChh
Q psy11689 290 ---TKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTAD 363 (390)
Q Consensus 290 ---~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~ 363 (390)
+.++. ...+|+...|..|+..... .....+++|+..+|+.|+||| ||||+++|++|++.|++++...|+++
T Consensus 337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~~~~~~d~dl~~lA~~t~G~s--GADi~~l~~eA~~~air~~~~~i~~~ 413 (437)
T 4b4t_L 337 LLRPGRLDRKVEIPLPNEAGRLEIFKIHTA-KVKKTGEFDFEAAVKMSDGFN--GADIRNCATEAGFFAIRDDRDHINPD 413 (437)
T ss_dssp TTSTTSEEEEECCCCCCHHHHHHHHHHHHH-TSCBCSCCCHHHHHHTCCSCC--HHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HhCCCccceeeecCCcCHHHHHHHHHHHhc-CCCCCcccCHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 33322 1225677788888633221 123356799999999999999 99999999999999999999999999
Q ss_pred hhhhhHHHHhcCccccccCCCcc
Q psy11689 364 TANKPRIQRIGNLSQRNRSSPKK 386 (390)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
||.+++-+..-+-.......++|
T Consensus 414 d~~~Al~~v~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 414 DLMKAVRKVAEVKKLEGTIEYQK 436 (437)
T ss_dssp HHHHHHHHHHHTCC---------
T ss_pred HHHHHHHHHHhccCcccchhhhc
Confidence 99999866554444444444444
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=303.04 Aligned_cols=246 Identities=20% Similarity=0.295 Sum_probs=193.6
Q ss_pred ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
+.|++.|+ ||||++++|+++.+.+.+|+.+++.|..+|+.+++|+|||||||||||+||+++|++++.+++
T Consensus 165 ~~p~v~~~---------digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~ 235 (428)
T 4b4t_K 165 EKPDVTYA---------DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI 235 (428)
T ss_dssp SSCSCCGG---------GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCHH---------HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 44555666 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEeccCHHH
Q psy11689 208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNGGYREQT 278 (390)
Q Consensus 208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~~~~~~~ 278 (390)
.++++++.+.|+|++++.++.+|..|+..+||||||||+|+++..|.. ..+...+... +--+....++.+
T Consensus 236 ~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~-ldg~~~~~~v~v 314 (428)
T 4b4t_K 236 RVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ-MDGFDQSTNVKV 314 (428)
T ss_dssp EEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHH-HHHSCSSCSEEE
T ss_pred EEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHH-hhCCCCCCCEEE
Confidence 999999999999999999999999999999999999999998876521 1111111110 000112234567
Q ss_pred HHhcCchhH-----HHhHHHh----hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689 279 ADTANKPRI-----QRTKREY----REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR 349 (390)
Q Consensus 279 i~~t~~~~~-----~r~~~~~----l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~ 349 (390)
|+|||+++. +|+.++. ++.+|+...|..|+..... .....+++|+..||++|+||| ||||+++|++|+
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~-~~~l~~~~dl~~lA~~t~G~s--gadi~~l~~eA~ 391 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS-KMSLAPEADLDSLIIRNDSLS--GAVIAAIMQEAG 391 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH-SSCBCTTCCHHHHHHHTTTCC--HHHHHHHHHHHH
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc-CCCCCcccCHHHHHHHCCCCC--HHHHHHHHHHHH
Confidence 888888765 4444432 2235567778777633221 223367799999999999999 999999999999
Q ss_pred HHHHHccccccChhhhhhhHHHHhcCccccccCCCcc
Q psy11689 350 IQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPKK 386 (390)
Q Consensus 350 ~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+.|+++++..|+++||.+|+.+++-.....+..-|||
T Consensus 392 ~~a~r~~~~~i~~~d~~~A~~~~~~~~~~~~~~d~yk 428 (428)
T 4b4t_K 392 LRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFYK 428 (428)
T ss_dssp HHHHHTTCSSBCHHHHHHHHHHHSCSCCCSSCCCSCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhhCccCCccHhhhhC
Confidence 9999999999999999999977665444444444443
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-37 Score=308.98 Aligned_cols=245 Identities=22% Similarity=0.312 Sum_probs=193.4
Q ss_pred cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+.|+++|+ ||||+++++++|.+.+.+|+.+|+.|+++++++++|+|||||||||||+||+|+|++++.+|
T Consensus 173 ~~~p~~t~~---------digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 173 DEKPTETYS---------DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp ESSCSCCGG---------GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCCCCCChH---------hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 345666666 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHH
Q psy11689 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQ 277 (390)
Q Consensus 207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~ 277 (390)
+.++++++.+.|+|++++.++.+|..|+..+||||||||+|+++..|... .....+... +-......++.
T Consensus 244 ~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~-ldg~~~~~~Vi 322 (434)
T 4b4t_M 244 LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ-LDGFSSDDRVK 322 (434)
T ss_dssp EEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH-HTTSCSSCSSE
T ss_pred EEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH-hhccCCCCCEE
Confidence 99999999999999999999999999999999999999999998765221 111111110 00011234566
Q ss_pred HHHhcCchhHH-----HhHHHhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689 278 TADTANKPRIQ-----RTKREYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR 349 (390)
Q Consensus 278 ~i~~t~~~~~~-----r~~~~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~ 349 (390)
+++|||+|+.+ |+.++.. ..+|+...|..|+..... .....+++|+..||++|+||| ||||+++|++|+
T Consensus 323 VIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~~~~~~dvdl~~lA~~t~G~s--GADi~~l~~eA~ 399 (434)
T 4b4t_M 323 VLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR-KMTTDDDINWQELARSTDEFN--GAQLKAVTVEAG 399 (434)
T ss_dssp EEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHH-HSCBCSCCCHHHHHHHCSSCC--HHHHHHHHHHHH
T ss_pred EEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCC--HHHHHHHHHHHH
Confidence 78889987764 3333222 226677788888632221 123356799999999999999 999999999999
Q ss_pred HHHHHccccccChhhhhhhHHHHhcCccccccCCCcc
Q psy11689 350 IQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPKK 386 (390)
Q Consensus 350 ~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+.|++++...|+++||.+++-...-+ +.+.++||+
T Consensus 400 ~~a~r~~~~~i~~~Df~~Al~~v~~~--~~~~i~~Ya 434 (434)
T 4b4t_M 400 MIALRNGQSSVKHEDFVEGISEVQAR--KSKSVSFYA 434 (434)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHSCSSS--CCCCCCCCC
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhCC--CCcCccccC
Confidence 99999999999999999998655433 223455553
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.2e-33 Score=303.33 Aligned_cols=350 Identities=21% Similarity=0.343 Sum_probs=242.9
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
.+++++++||+++.+|+++++ +|||+ .+.++. +.+.|.+++.. ..+..++++ +.++..|
T Consensus 339 ~~v~vI~atn~~~~ld~al~r--------------~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l-~~la~~t 403 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRR--------------FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANET 403 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTS--------------TTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT-HHHHHSC
T ss_pred ccEEEecccCCchhcCHHHhc--------------ccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh-HHHHHhh
Confidence 578999999999888888777 99998 566666 47788888875 456678889 8899999
Q ss_pred cCCccccccccccccchhhhcCCCCCCC------------CCCCCch--hhH--------hhhcccccCccccccccCCC
Q psy11689 84 EGIAGENLQRGGGEEGIELREGGQRNGG------------EGGIGLN--ERV--------QRIGEGREERRDWEGEEEGA 141 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~~~~~~~~~~------------~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~ 141 (390)
.||+++++..++.+++............ ....... ... .+......+.+.|+
T Consensus 404 ~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~------ 477 (806)
T 1ypw_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE------ 477 (806)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSC------
T ss_pred cCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCcccccc------
Confidence 9999999999888877653321110000 0000000 000 01111223344444
Q ss_pred CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689 142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~ 221 (390)
+++|++.+++.+.+.+.++..+++.+.++++.++.++||+||||||||+|++++|..++.+++.++++++...|.|+
T Consensus 478 ---di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~ 554 (806)
T 1ypw_A 478 ---DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554 (806)
T ss_dssp ---SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTT
T ss_pred ---ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHH----
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQ---- 288 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~---- 288 (390)
.+..++.+|+.|+...|+|+||||+|+++..+.. ......+... +.......++.++++||+++.+
T Consensus 555 ~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~-ld~~~~~~~v~vI~tTN~~~~ld~al 633 (806)
T 1ypw_A 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE-MDGMSTKKNVFIIGATNRPDIIDPAI 633 (806)
T ss_dssp SSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTT-CC------CCBCCCCCBSCGGGSCTT
T ss_pred cHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHH-HhcccccCCeEEEEecCCcccCCHHH
Confidence 9999999999999999999999999998866521 1222222221 2222334456778899987653
Q ss_pred -HhHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc-------
Q psy11689 289 -RTKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY------- 357 (390)
Q Consensus 289 -r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~------- 357 (390)
|+.++. ...+++...+..|+...... .....++++..+++.|.||+ |+||+++|+.|++.|.++..
T Consensus 634 lrpgRf~~~i~~~~p~~~~r~~Il~~~l~~-~~~~~~~~l~~la~~t~g~s--gadi~~l~~~a~~~a~~~~~~~~~~~~ 710 (806)
T 1ypw_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRK-SPVAKDVDLEFLAKMTNGFS--GADLTEICQRACKLAIRESIESEIRRE 710 (806)
T ss_dssp SSGGGTTSCCCCCCCCCSHHHHHTTTTTSC-C----CCCCSCSCGGGSSSC--CHHHHHHHHHHHHHHHSCC--------
T ss_pred hCccccCceeecCCCCHHHHHHHHHHHhcc-CCCCcccCHHHHHHhccccC--HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 322221 12245667777775433322 22356799999999999999 99999999999999988752
Q ss_pred ------------------cccChhhhhhhHHHHhcCccccccCCCccc
Q psy11689 358 ------------------REQTADTANKPRIQRIGNLSQRNRSSPKKV 387 (390)
Q Consensus 358 ------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
..|++++|.++.-..--+.++.+.-.|+++
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~ 758 (806)
T 1ypw_A 711 RERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 758 (806)
T ss_dssp ----------------CCTTTTTTSSCCCCCC----------------
T ss_pred hhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 257888888876444445555555555444
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=7.5e-31 Score=278.45 Aligned_cols=226 Identities=23% Similarity=0.320 Sum_probs=177.4
Q ss_pred CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689 141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG 220 (390)
Q Consensus 141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g 220 (390)
+.++||+|+++++++|++.+.+|+++|+.|+.+++.+|+++|||||||||||+||+++|++++.+++.++++++.+.|.|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 33349999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHH-----H
Q psy11689 221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQ-----R 289 (390)
Q Consensus 221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~-----r 289 (390)
++++.++.+|..|+.++||||||||+|+++..+.. ......+... +..+....++.+|++||+++.+ |
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~-mdg~~~~~~V~VIaaTN~~d~LD~ALrR 359 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL-MDGLKQRAHVIVMAATNRPNSIDPALRR 359 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTH-HHHCCGGGCEEEEEECSSTTTSCTTTTS
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHH-HhcccccCCEEEEEecCChhhcCHHHhC
Confidence 99999999999999999999999999999976532 1111111110 0001122345567888887654 3
Q ss_pred hHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc---------
Q psy11689 290 TKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY--------- 357 (390)
Q Consensus 290 ~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~--------- 357 (390)
+.++. ...+|+...|..|+..... .....+++|+..+|.+|+||+ |+||++||++|++.|++|..
T Consensus 360 ~GRFd~~I~i~~Pd~~~R~~IL~~~l~-~~~~~~dvdl~~lA~~T~Gfs--gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~ 436 (806)
T 3cf2_A 360 FGRFDREVDIGIPDATGRLEILQIHTK-NMKLADDVDLEQVANETHGHV--GADLAALCSEAALQAIRKKMDLIDLEDET 436 (806)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHTCS-SSEECTTCCHHHHHHHCCSCC--HHHHHHHHHHHHHHHHHHHHHHGGGTCCC
T ss_pred CcccceEEecCCCCHHHHHHHHHHHhc-CCCCCcccCHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhccccccccccc
Confidence 32322 2225677888888633221 122367899999999999999 99999999999999988743
Q ss_pred --------cccChhhhhhhHH
Q psy11689 358 --------REQTADTANKPRI 370 (390)
Q Consensus 358 --------~~i~~~~~~~~~~ 370 (390)
..++++||..+.-
T Consensus 437 ~~~e~~~~~~v~~~Df~~Al~ 457 (806)
T 3cf2_A 437 IDAEVMNSLAVTMDDFRWALS 457 (806)
T ss_dssp CSHHHHHHCEECTTHHHHHHS
T ss_pred cchhhhccceeeHHHHHHHHH
Confidence 2467777777653
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=225.95 Aligned_cols=236 Identities=22% Similarity=0.340 Sum_probs=171.3
Q ss_pred ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
+.+++.|+ ||+|++++++++.+.+.+|+.+++.++++++..+.+++|+||||||||+|++++|.+.+.+++
T Consensus 3 ~~~~~~~~---------di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 3 TVPNVTWA---------DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp ------------------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCHH---------HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 34677888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH----------HHHhhcCCCcEEEeccCHH
Q psy11689 208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT----------ADNAKKPRIPRTNGGYREQ 277 (390)
Q Consensus 208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~----------~~~~~~~~~~~i~~~~~~~ 277 (390)
.+++.++...+.++.++.++.+|+.+....|+++|+||++.++..+..... ...+... .......
T Consensus 74 ~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg-----~~~~~~i 148 (274)
T 2x8a_A 74 SVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL-----EARQQVF 148 (274)
T ss_dssp EEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC-----CSTTCEE
T ss_pred EEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc-----cccCCEE
Confidence 999999988899999999999999999999999999999998765432111 1111000 0011223
Q ss_pred HHHhcCchhHHHhHHHh--------hhhcCCchhHHHhhcccccc--cCCCCCCCCcchhhhcC--CCCCCCcHHHHHHH
Q psy11689 278 TADTANKPRIQRTKREY--------REQTADTAHKTRISRTNRGY--REKTADTANKPRIPRTN--RGYREYSAQNANTA 345 (390)
Q Consensus 278 ~i~~t~~~~~~r~~~~~--------l~~l~~~~~r~~I~~~n~~~--r~~~~~~vdl~~la~~t--~gfs~~gaDL~~l~ 345 (390)
+++++|+|+++.+.+.. ...+|+...|..|+...... ......++|+..+|..| +||| ||||+++|
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~s--gadl~~l~ 226 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT--GADLSALV 226 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCC--HHHHHHHH
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcC--HHHHHHHH
Confidence 45677877775444321 12356677887776433221 12235689999999875 4999 99999999
Q ss_pred HHHHHHHHHcc-----------ccccChhhhhhhHHHHhcCcccc
Q psy11689 346 NKPRIQRTKRE-----------YREQTADTANKPRIQRIGNLSQR 379 (390)
Q Consensus 346 ~~A~~~a~~r~-----------~~~i~~~~~~~~~~~~~~~~~~~ 379 (390)
++|++.|.++. ...|+++||.+++-...-+..++
T Consensus 227 ~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 227 REASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp HHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC---
T ss_pred HHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCChh
Confidence 99999998762 23699999999986655544443
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.8e-28 Score=235.77 Aligned_cols=212 Identities=22% Similarity=0.382 Sum_probs=160.8
Q ss_pred ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-ccch
Q psy11689 128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-VYRV 206 (390)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-~~~~ 206 (390)
+.+.+.|+ ||+|++++++.+.+.+.+|+++++.|.. ...++.++||+||||||||+||+++|.++ +.++
T Consensus 5 ~~~~~~~~---------di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 5 ERPNVKWS---------DVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp ECCCCCGG---------GSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred cCCCCCHH---------HhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 45677888 9999999999999999999999999884 35678999999999999999999999999 8899
Q ss_pred hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HH----HHHHhhcCCCcEEEeccCH
Q psy11689 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQ----TADNAKKPRIPRTNGGYRE 276 (390)
Q Consensus 207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~----~~~~~~~~~~~~i~~~~~~ 276 (390)
+.++++++...|.|..++.++.+|..|...+|+||||||+|.+...+.. .. ....+..... ...++
T Consensus 75 ~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----~~~~v 150 (322)
T 1xwi_A 75 FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV----DNDGI 150 (322)
T ss_dssp EEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS----CCTTE
T ss_pred EEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc----cCCCE
Confidence 9999999999999999999999999999999999999999999764421 11 1111111100 11233
Q ss_pred HHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689 277 QTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI 350 (390)
Q Consensus 277 ~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~ 350 (390)
.++++||+++.+...+ .....+|+...|..|+...........++.++..||+.|+||+ |+||+++|++|++
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s--gadl~~l~~~A~~ 228 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS--GADISIIVRDALM 228 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCC--HHHHHHHHHHHHT
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 4556666655432211 1122355667777775433322222245678899999999999 9999999999999
Q ss_pred HHHHc
Q psy11689 351 QRTKR 355 (390)
Q Consensus 351 ~a~~r 355 (390)
.|.++
T Consensus 229 ~a~r~ 233 (322)
T 1xwi_A 229 QPVRK 233 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.94 E-value=5.6e-28 Score=231.41 Aligned_cols=241 Identities=22% Similarity=0.376 Sum_probs=182.4
Q ss_pred hhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 123 RIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++...+.+.+.|+ +|+|++++++.+.+.+.+++.+++.|.++++.++.++||+||||||||+|++++|.++
T Consensus 3 ~~~~~~~~~~~~~---------di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 3 RETVVEVPQVTWE---------DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCEECCCCCGG---------GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ccccccCCCCCHH---------HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3444566788888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh-------------HHHHHHHhhcCCCcE
Q psy11689 203 VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY-------------REQTADNAKKPRIPR 269 (390)
Q Consensus 203 ~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~-------------~~~~~~~~~~~~~~~ 269 (390)
+.+++.++++++...+.|..++.++.+|..|....|+||||||+|.+...+. .......+....
T Consensus 74 ~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--- 150 (301)
T 3cf0_A 74 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--- 150 (301)
T ss_dssp TCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC---
T ss_pred CCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc---
Confidence 9999999999998888898888899999999999999999999998765432 122233332211
Q ss_pred EEeccCHHHHHhcCchhHHHhH-----HH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHH
Q psy11689 270 TNGGYREQTADTANKPRIQRTK-----RE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQN 341 (390)
Q Consensus 270 i~~~~~~~~i~~t~~~~~~r~~-----~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL 341 (390)
...++.++++||+++.+.+. ++ ....+|+...|..|+...... .....++++..++..|+||+ |+||
T Consensus 151 --~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~-~~~~~~~~~~~la~~~~g~s--g~dl 225 (301)
T 3cf0_A 151 --TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK-SPVAKDVDLEFLAKMTNGFS--GADL 225 (301)
T ss_dssp --TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-SCBCSSCCHHHHHHTCSSCC--HHHH
T ss_pred --CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc-CCCCccchHHHHHHHcCCCC--HHHH
Confidence 12234456677776543221 11 111245566666665332221 22345789999999999999 9999
Q ss_pred HHHHHHHHHHHHHccc-------------------------cccChhhhhhhHHHHhcCccccc
Q psy11689 342 ANTANKPRIQRTKREY-------------------------REQTADTANKPRIQRIGNLSQRN 380 (390)
Q Consensus 342 ~~l~~~A~~~a~~r~~-------------------------~~i~~~~~~~~~~~~~~~~~~~~ 380 (390)
+++|++|.+.|..+.. ..++++||.++.-..-.+.++.+
T Consensus 226 ~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~ 289 (301)
T 3cf0_A 226 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND 289 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHH
Confidence 9999999999876532 25788888888765555555443
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.94 E-value=5e-28 Score=233.88 Aligned_cols=214 Identities=23% Similarity=0.366 Sum_probs=162.7
Q ss_pred cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+.+++.|+ +|+|++++++.+.+.+.+|..+++.+.. +..++.++||+||||||||+||+++|.+++.++
T Consensus 10 ~~~~~~~~~---------di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 79 (322)
T 3eie_A 10 SEKPNVKWE---------DVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79 (322)
T ss_dssp EECCCCCGG---------GSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred ecCCCCCHH---------HhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence 355677787 9999999999999999999999998876 456788999999999999999999999999999
Q ss_pred hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----------HHHHHHhhcCCCcEEEeccCH
Q psy11689 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----------EQTADNAKKPRIPRTNGGYRE 276 (390)
Q Consensus 207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----------~~~~~~~~~~~~~~i~~~~~~ 276 (390)
+.++++++...|.|+.+..++.+|..|+..+|+||||||+|.+...+.. ......+.... ....++
T Consensus 80 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v 155 (322)
T 3eie_A 80 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGV 155 (322)
T ss_dssp EEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----TSCCCE
T ss_pred EEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----ccCCce
Confidence 9999999999999999999999999999999999999999999875532 11222221110 011223
Q ss_pred HHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689 277 QTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI 350 (390)
Q Consensus 277 ~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~ 350 (390)
.++++||+++.+...+ .....+|+...|..|+...........++.++..|+++|+||+ |+||.++|++|++
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~s--g~di~~l~~~a~~ 233 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYS--GSDIAVVVKDALM 233 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCC--HHHHHHHHHHHTT
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 3455666654432111 1112356677777776443333333345678899999999999 9999999999999
Q ss_pred HHHHcc
Q psy11689 351 QRTKRE 356 (390)
Q Consensus 351 ~a~~r~ 356 (390)
.|.++.
T Consensus 234 ~a~r~~ 239 (322)
T 3eie_A 234 QPIRKI 239 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.93 E-value=2.2e-27 Score=232.47 Aligned_cols=215 Identities=23% Similarity=0.361 Sum_probs=155.0
Q ss_pred cccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 125 GEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
+....+.+.|+ +|+|++.+++.+.+.+.+++.+++.|.. +..++.++||+||||||||+||+++|.+++.
T Consensus 41 ~~~~~~~~~~~---------di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 41 ILSEKPNVKWE---------DVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp ------CCCGG---------GSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred hcccCCCCCHH---------HhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 33445667777 9999999999999999999999999886 4577889999999999999999999999999
Q ss_pred chhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----------HHHHHHhhcCCCcEEEecc
Q psy11689 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----------EQTADNAKKPRIPRTNGGY 274 (390)
Q Consensus 205 ~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----------~~~~~~~~~~~~~~i~~~~ 274 (390)
+++.++++++...+.|..++.++.+|..|...+|+||||||+|.+...+.. +.....+.... ....
T Consensus 111 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~~~~ 186 (355)
T 2qp9_X 111 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQ 186 (355)
T ss_dssp EEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------C
T ss_pred CEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----ccCC
Confidence 999999999999999999999999999999999999999999999876432 11111111110 0112
Q ss_pred CHHHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHH
Q psy11689 275 REQTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKP 348 (390)
Q Consensus 275 ~~~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A 348 (390)
++.++++||+++.+...+ .....+|+...|..|+...........++.++..||+.|+||+ |+||.++|++|
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~s--g~dl~~l~~~A 264 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYS--GSDIAVVVKDA 264 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCC--HHHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHH
Confidence 344566667664322111 1112355666777775433322222245678899999999999 99999999999
Q ss_pred HHHHHHc
Q psy11689 349 RIQRTKR 355 (390)
Q Consensus 349 ~~~a~~r 355 (390)
++.|.++
T Consensus 265 ~~~a~~~ 271 (355)
T 2qp9_X 265 LMQPIRK 271 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.93 E-value=2.7e-25 Score=224.45 Aligned_cols=232 Identities=24% Similarity=0.337 Sum_probs=172.4
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHH
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAE 223 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~ 223 (390)
+||+|.+++++++.+.+.. +..+..|.+++...+.++||+||||||||+|++++|.+.+.+++.++++++...+.|.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~ 94 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA 94 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHH
T ss_pred HHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccH
Confidence 3999999999999999876 678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHHHHhcCchhHH-----H
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQTADTANKPRIQ-----R 289 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~-----r 289 (390)
+.++.+|..|+..+|+||||||+|.+...+... .....+... +..+....++.++++||+++.+ |
T Consensus 95 ~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~-ld~~~~~~~viVIaaTn~~~~Ld~allR 173 (476)
T 2ce7_A 95 ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE-MDGFDSKEGIIVMAATNRPDILDPALLR 173 (476)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH-HHHSCGGGTEEEEEEESCGGGSCGGGGS
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH-HhccCCCCCEEEEEecCChhhhchhhcc
Confidence 999999999999999999999999998754321 111111100 0000011233445666666543 2
Q ss_pred hHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhh
Q psy11689 290 TKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTAN 366 (390)
Q Consensus 290 ~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~ 366 (390)
+.++. ...+|+...|..|+..... +....+++++..+|..|+||+ |+||+++|++|++.|.+++...|++++|.
T Consensus 174 ~gRFd~~i~i~~Pd~~~R~~Il~~~~~-~~~l~~~v~l~~la~~t~G~s--gadL~~lv~~Aal~A~~~~~~~I~~~dl~ 250 (476)
T 2ce7_A 174 PGRFDKKIVVDPPDMLGRKKILEIHTR-NKPLAEDVNLEIIAKRTPGFV--GADLENLVNEAALLAAREGRDKITMKDFE 250 (476)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred cCcceeEeecCCCCHHHHHHHHHHHHH-hCCCcchhhHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHcCCCeecHHHHH
Confidence 22211 1124556667666532221 123356788999999999999 99999999999999999888899999999
Q ss_pred hhHHHHhcCccccc
Q psy11689 367 KPRIQRIGNLSQRN 380 (390)
Q Consensus 367 ~~~~~~~~~~~~~~ 380 (390)
.++...+.|.+.+.
T Consensus 251 ~al~~v~~~~~~~~ 264 (476)
T 2ce7_A 251 EAIDRVIAGPARKS 264 (476)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHHhcCccccc
Confidence 99998888765543
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.92 E-value=2.6e-26 Score=231.33 Aligned_cols=219 Identities=21% Similarity=0.341 Sum_probs=153.2
Q ss_pred cccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-c
Q psy11689 125 GEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-V 203 (390)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-~ 203 (390)
+....+.+.|+ +|+|++.+++.+.+.+.+|+.+++.|.. ...++.++||+||||||||+||+++|.++ +
T Consensus 124 i~~~~~~~~~~---------di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~ 193 (444)
T 2zan_A 124 IVIERPNVKWS---------DVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANN 193 (444)
T ss_dssp CBCCCCCCCGG---------GSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCS
T ss_pred eeccCCCCCHH---------HhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33445566666 9999999999999999999999988874 34677999999999999999999999999 8
Q ss_pred cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcCCCcEEEeccCHH
Q psy11689 204 YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKPRIPRTNGGYREQ 277 (390)
Q Consensus 204 ~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~~~~~i~~~~~~~ 277 (390)
.+++.++++++...|.|..+..++.+|..+...+|+||||||+|.+...+.. ......+....-.......++.
T Consensus 194 ~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp SEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred CCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 8999999999999999988888999999999999999999999999764321 1222222221100000123445
Q ss_pred HHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHH
Q psy11689 278 TADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQ 351 (390)
Q Consensus 278 ~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~ 351 (390)
+|++||+++.+.+.+ .....+|+...|..|+...........++.++..||+.|+||+ |+||.++|++|++.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s--gadl~~l~~~a~~~ 351 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS--GADISIIVRDALMQ 351 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCC--HHHHHHHHHHHHTH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHHHHH
Confidence 566777765432211 1112255666677765333322222245678899999999999 99999999999999
Q ss_pred HHHc
Q psy11689 352 RTKR 355 (390)
Q Consensus 352 a~~r 355 (390)
|+++
T Consensus 352 a~r~ 355 (444)
T 2zan_A 352 PVRK 355 (444)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.92 E-value=5e-25 Score=205.63 Aligned_cols=231 Identities=23% Similarity=0.324 Sum_probs=169.3
Q ss_pred ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC
Q psy11689 137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS 216 (390)
Q Consensus 137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~ 216 (390)
++....+++++|++.+++.+.+.+.. +.+++.++.++...+.+++|+||||||||++++++|++++.+++.+++.++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 33444455999999999999998876 77788888888888999999999999999999999999999999999999988
Q ss_pred cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH-------------HHHHHHhhcCCCcEEEeccCHHHHHhcC
Q psy11689 217 PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR-------------EQTADNAKKPRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 217 ~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~-------------~~~~~~~~~~~~~~i~~~~~~~~i~~t~ 283 (390)
.+.+..++.++.+|..|....|+++|+||+|.+...+.. ......+.... ...+..++++||
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~vI~~tn 158 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVIAATN 158 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----SSSCEEEEEEES
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----cCCCEEEEEeeC
Confidence 888888889999999999999999999999887653311 11111111110 112234455666
Q ss_pred chhHH-----HhHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689 284 KPRIQ-----RTKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR 355 (390)
Q Consensus 284 ~~~~~-----r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r 355 (390)
+++.+ ++.++. ...+|+...|..|+.... .+....+++++..++..++||+ ++||++++.+|+..|..+
T Consensus 159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~-~~~~l~~~~~~~~la~~~~G~~--~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM-RRVPLAPDIDAAIIARGTPGFS--GADLANLVNEAALFAARG 235 (257)
T ss_dssp CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHT
T ss_pred CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH-hcCCCCccccHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHh
Confidence 65432 211111 112455666666653221 1223356688889999999999 999999999999999999
Q ss_pred cccccChhhhhhhHHHHhcCc
Q psy11689 356 EYREQTADTANKPRIQRIGNL 376 (390)
Q Consensus 356 ~~~~i~~~~~~~~~~~~~~~~ 376 (390)
+...|+++|+.+++-....|.
T Consensus 236 ~~~~i~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 236 NKRVVSMVEFEKAKDKIMMGL 256 (257)
T ss_dssp TCSSBCHHHHHHHHHHHTTCC
T ss_pred CCCcccHHHHHHHHHHHhcCC
Confidence 989999999999998777664
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=1.4e-24 Score=205.26 Aligned_cols=231 Identities=23% Similarity=0.360 Sum_probs=176.2
Q ss_pred ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
..+.+.|+ +++|++.+++.+.+.+..++.+++.+..+++.++.++||+||||||||+|++++|.+++.+++
T Consensus 10 ~~~~~~~~---------~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 10 ERPNVRYE---------DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp SSCCCCGG---------GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCHH---------HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 34556677 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh----------hHHHHHHHhhcC-CCcEEEeccCH
Q psy11689 208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE----------YREQTADNAKKP-RIPRTNGGYRE 276 (390)
Q Consensus 208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r----------~~~~~~~~~~~~-~~~~i~~~~~~ 276 (390)
.+.+.++...+.+.....+..+|..+....|+||||||++.+...+ ........+... .. ....+.
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~~~~ 157 (285)
T 3h4m_A 81 RVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF---DARGDV 157 (285)
T ss_dssp EEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT---CSSSSE
T ss_pred EEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC---CCCCCE
Confidence 9999999999999999999999999999999999999999986322 111121111110 00 001123
Q ss_pred HHHHhcCchhHHHhH-----HH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHH
Q psy11689 277 QTADTANKPRIQRTK-----RE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKP 348 (390)
Q Consensus 277 ~~i~~t~~~~~~r~~-----~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A 348 (390)
.+++++|+++.+... ++ .....++...+..|+.... .......++++..++..+.||+ ++||+.+++.|
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~-~~~~~~~~~~~~~l~~~~~g~~--~~~i~~l~~~a 234 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT-RKMNLAEDVNLEEIAKMTEGCV--GAELKAICTEA 234 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHHCTTCC--HHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH-hcCCCCCcCCHHHHHHHcCCCC--HHHHHHHHHHH
Confidence 345566655442211 11 1112445666666653221 1222346688999999999999 99999999999
Q ss_pred HHHHHHccccccChhhhhhhHHHHh
Q psy11689 349 RIQRTKREYREQTADTANKPRIQRI 373 (390)
Q Consensus 349 ~~~a~~r~~~~i~~~~~~~~~~~~~ 373 (390)
...|..++...|+.+|+.++.-...
T Consensus 235 ~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 235 GMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHhccCcCCHHHHHHHHHHHH
Confidence 9999999999999999999986554
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.91 E-value=1.8e-24 Score=219.69 Aligned_cols=233 Identities=23% Similarity=0.333 Sum_probs=176.3
Q ss_pred CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689 142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~ 221 (390)
.|++|+|.++++.++.+++.. +..+..|.+++...+.+++|+||||||||+|++++|.+++.+++.+++.++...+.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~ 107 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV 107 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTH
T ss_pred CHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhh
Confidence 334999999999999999876 6778888888888999999999999999999999999999999999999998888998
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh---------HHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHH---
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEY---------REQTADNAKKPRIPRTNGGYREQTADTANKPRIQR--- 289 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~---------~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r--- 289 (390)
..+.++.+|+.+....|+++|+||+|.+...+. .......+... +.-........+++++|+|+.+.
T Consensus 108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~-Ldg~~~~~~viviAatn~p~~LD~aL 186 (499)
T 2dhr_A 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGFEKDTAIVVMAATNRPDILDPAL 186 (499)
T ss_dssp HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH-GGGCCSSCCCEEEECCSCGGGSCTTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH-hcccccCccEEEEEecCChhhcCccc
Confidence 888899999999888999999999998865332 11111111100 00000011223456667665532
Q ss_pred --hHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhh
Q psy11689 290 --TKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADT 364 (390)
Q Consensus 290 --~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~ 364 (390)
+.++. ...+|+...|..|+.... ......+++++..+|..|+||+ |+||+++|++|++.|++++...|+++|
T Consensus 187 lr~gRfdr~i~i~~Pd~~~R~~IL~~~~-~~~~l~~dv~l~~lA~~t~G~~--gadL~~lv~~Aa~~A~~~~~~~It~~d 263 (499)
T 2dhr_A 187 LRPGRFDRQIAIDAPDVKGREQILRIHA-RGKPLAEDVDLALLAKRTPGFV--GADLENLLNEAALLAAREGRRKITMKD 263 (499)
T ss_dssp SSTTSSCCEEECCCCCHHHHHHHHHHTT-SSSCCCCSSTTHHHHTTSCSCC--HHHHHHHHHHHHHHHTTTCCSSCCSHH
T ss_pred ccccccceEEecCCCCHHHHHHHHHHHH-hcCCCChHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence 22221 122556677777753322 1223366789999999999999 999999999999999988888999999
Q ss_pred hhhhHHHHhcCcccc
Q psy11689 365 ANKPRIQRIGNLSQR 379 (390)
Q Consensus 365 ~~~~~~~~~~~~~~~ 379 (390)
|..++...+.|.+.+
T Consensus 264 l~~al~~v~~~~~~~ 278 (499)
T 2dhr_A 264 LEEAADRVMMLPAKK 278 (499)
T ss_dssp HHHHHHHHTTCSSSS
T ss_pred HHHHHHHHhcccccc
Confidence 999999888886654
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=202.93 Aligned_cols=231 Identities=21% Similarity=0.286 Sum_probs=152.5
Q ss_pred CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689 142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~ 221 (390)
.+++++|++.+++.+.+.+.. +.+++.|..++...+.++||+||||||||++++++|.+.+.+++.+++.++...+.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 344999999999999999876 7788888888999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH--------------HHHHHhhcCCCcEEEeccCHHHHHhcCchhH
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE--------------QTADNAKKPRIPRTNGGYREQTADTANKPRI 287 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~--------------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~ 287 (390)
....++.+|..+....|+||||||+|.+...+... .....+.... ...+..+++++|.++.
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----~~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----TTDHVIVLASTNRADI 157 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-----TTCCEEEEEEESCGGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-----CCCCEEEEecCCChhh
Confidence 88899999999999999999999999997654221 1111111110 0122334555555443
Q ss_pred H-----HhHHH---hhhhcCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccc
Q psy11689 288 Q-----RTKRE---YREQTADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYR 358 (390)
Q Consensus 288 ~-----r~~~~---~l~~l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~ 358 (390)
+ +..++ ....+|+..++..|+.......... ..+..+..+++.+.||+ |+||.+++++|+..|.+++..
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~--~~~l~~l~~~a~~~a~~~~~~ 235 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFS--GADIANICNEAALHAAREGHT 235 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCC--HHHHHHHHHHHHTC-------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHcCCC
Confidence 2 21111 1122455666666653222111111 11223468899999999 999999999999999999889
Q ss_pred ccChhhhhhhHHHHhcCccccc
Q psy11689 359 EQTADTANKPRIQRIGNLSQRN 380 (390)
Q Consensus 359 ~i~~~~~~~~~~~~~~~~~~~~ 380 (390)
.|+++++..++-....|..+++
T Consensus 236 ~i~~~d~~~a~~~~~~~~~~~~ 257 (262)
T 2qz4_A 236 SVHTLNFEYAVERVLAGTAKKS 257 (262)
T ss_dssp -CCBCCHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHhccChhhhh
Confidence 9999999999988887776655
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=9.2e-25 Score=207.88 Aligned_cols=237 Identities=23% Similarity=0.305 Sum_probs=170.1
Q ss_pred hhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 122 QRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.+......+...|+ +++|.+.+++.+.+.+..+..+++.|..+. .++.++||+||||||||++++++|.+
T Consensus 8 ~~~~~~~~~~~~~~---------~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 8 LDEIVEGGAKVEWT---------DIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp HTTTBCCSSCCCGG---------GSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhccCCCCCCHH---------HhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34444556677787 999999999999999999888888887665 56789999999999999999999999
Q ss_pred hccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH----------HHHHHhhcCCCcEEE
Q psy11689 202 SVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE----------QTADNAKKPRIPRTN 271 (390)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~----------~~~~~~~~~~~~~i~ 271 (390)
++.+++.++++++...+.+..++.++.+|..+...+|++|||||+|.+.+.+... .....+.... ...
T Consensus 78 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~ 155 (297)
T 3b9p_A 78 CSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP--GNP 155 (297)
T ss_dssp TTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred hCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc--ccC
Confidence 9999999999999999999999999999999999999999999999998754321 1111111111 011
Q ss_pred eccCHHHHHhcCchhH-----HHhH-HHhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHH
Q psy11689 272 GGYREQTADTANKPRI-----QRTK-REYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTA 345 (390)
Q Consensus 272 ~~~~~~~i~~t~~~~~-----~r~~-~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~ 345 (390)
.+.++.++++||+++. .+.+ ......+|+...+..|+...........++.++..+++.+.||+ |+||.+++
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~--~~~l~~l~ 233 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYS--GSDLTALA 233 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCC--HHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC--HHHHHHHH
Confidence 1123445666666543 2211 11112245556666664222111122234456778999999999 99999999
Q ss_pred HHHHHHHHHcc------------ccccChhhhhhhHHHH
Q psy11689 346 NKPRIQRTKRE------------YREQTADTANKPRIQR 372 (390)
Q Consensus 346 ~~A~~~a~~r~------------~~~i~~~~~~~~~~~~ 372 (390)
+.|+..+.++. ...|+++||..++-..
T Consensus 234 ~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 234 KDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 99999998764 2478999998886543
No 22
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.9e-24 Score=211.74 Aligned_cols=245 Identities=21% Similarity=0.305 Sum_probs=175.5
Q ss_pred HhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689 121 VQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~ 200 (390)
+.+.+....+...|+ +++|.+.+++.+.+.+.+++.+++.|.... .++.++||+||||||||+||+++|.
T Consensus 70 i~~~i~~~~~~~~~~---------~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 70 IMNEIMDHGPPVNWE---------DIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp HHHHTBCCSCCCCGG---------GSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhhcccCCCCCCHH---------HhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHH
Confidence 344455556677788 999999999999999999888888887654 6788999999999999999999999
Q ss_pred hhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----------HHHHHHhhcCCCcEE
Q psy11689 201 HSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----------EQTADNAKKPRIPRT 270 (390)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----------~~~~~~~~~~~~~~i 270 (390)
+++.+++.++++++...+.+..+..++.+|..+...+|+||||||+|.+...+.. ......+.... .
T Consensus 140 ~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---~ 216 (357)
T 3d8b_A 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT---T 216 (357)
T ss_dssp HTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC------
T ss_pred HcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc---c
Confidence 9999999999999999999999999999999999999999999999998765421 11111111100 0
Q ss_pred EeccCHHHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHH
Q psy11689 271 NGGYREQTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANT 344 (390)
Q Consensus 271 ~~~~~~~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l 344 (390)
....++.+|++||+++.+...+ .....+++...+..++...........++.++..+++.++||+ |+||..|
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s--~~dl~~l 294 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFS--GADMTQL 294 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCC--HHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCC--HHHHHHH
Confidence 0112334456666654321111 1112244556665554222211122234456788999999999 9999999
Q ss_pred HHHHHHHHHHc------------cccccChhhhhhhHHHHhcCccccc
Q psy11689 345 ANKPRIQRTKR------------EYREQTADTANKPRIQRIGNLSQRN 380 (390)
Q Consensus 345 ~~~A~~~a~~r------------~~~~i~~~~~~~~~~~~~~~~~~~~ 380 (390)
|..|+..+.++ ....|+++||.+++-...-+..+++
T Consensus 295 ~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~ 342 (357)
T 3d8b_A 295 CREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKD 342 (357)
T ss_dssp HHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHH
Confidence 99999998774 2357999999999876665555443
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.90 E-value=3.6e-24 Score=217.62 Aligned_cols=219 Identities=24% Similarity=0.351 Sum_probs=170.1
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~ 224 (390)
+++|.+..++.+.+.+..++.+++.|..++..++.++||+||||||||++|+++|.+++.+++.++++++.+.+.|+.+.
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~ 284 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhh------H----HHHHHHhhcCCCcEEEeccCHHHHHhcCchhH-----HH
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEY------R----EQTADNAKKPRIPRTNGGYREQTADTANKPRI-----QR 289 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~------~----~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~-----~r 289 (390)
.++.+|..|....|++|||||+|.+...+. . ......+.... ...++.++++||+++. .+
T Consensus 285 ~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----~~~~v~vIaaTn~~~~Ld~al~r 359 (489)
T 3hu3_A 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAATNRPNSIDPALRR 359 (489)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----TTSCEEEEEEESCGGGBCGGGGS
T ss_pred HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----cCCceEEEEecCCccccCHHHhC
Confidence 999999999999999999999999886432 1 11222221110 1122344566666643 22
Q ss_pred hHHH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccc--------
Q psy11689 290 TKRE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYR-------- 358 (390)
Q Consensus 290 ~~~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~-------- 358 (390)
..++ ....+|+...|..|+..... ......++++..++..+.||+ |+||.+||++|++.|.++...
T Consensus 360 ~gRf~~~i~i~~P~~~eR~~IL~~~~~-~~~l~~~~~l~~la~~t~g~s--~~dL~~L~~~A~~~a~r~~~~~i~~~~~~ 436 (489)
T 3hu3_A 360 FGRFDREVDIGIPDATGRLEILQIHTK-NMKLADDVDLEQVANETHGHV--GADLAALCSEAALQAIRKKMDLIDLEDET 436 (489)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHHTT-TSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHTTTTTCCTTCSS
T ss_pred CCcCceEEEeCCCCHHHHHHHHHHHHh-cCCCcchhhHHHHHHHccCCc--HHHHHHHHHHHHHHHHHhccccccccccc
Confidence 2221 12235566777777533222 222356688999999999999 999999999999999887543
Q ss_pred ---------ccChhhhhhhHHH
Q psy11689 359 ---------EQTADTANKPRIQ 371 (390)
Q Consensus 359 ---------~i~~~~~~~~~~~ 371 (390)
.++++||.++.-+
T Consensus 437 ~~~~~~~~~~vt~edf~~Al~~ 458 (489)
T 3hu3_A 437 IDAEVMNSLAVTMDDFRWALSQ 458 (489)
T ss_dssp CCHHHHHHCCBCHHHHHHHHTS
T ss_pred cchhhcccCcCCHHHHHHHHHh
Confidence 4788888887643
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.89 E-value=8.5e-25 Score=205.07 Aligned_cols=229 Identities=21% Similarity=0.340 Sum_probs=165.8
Q ss_pred CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689 143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA 222 (390)
Q Consensus 143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~ 222 (390)
+++++|.+.+++.+.+.+.. +.+++.|.+++...+.++||+||||||||+|++++|.+++.+++.+++..+...+.+..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~ 88 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLG 88 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSC
T ss_pred HHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchH
Confidence 33999999999999998876 78899999999999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHH------hhcCCCcEEE----eccCHHHHHhcCchhHH----
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADN------AKKPRIPRTN----GGYREQTADTANKPRIQ---- 288 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~------~~~~~~~~i~----~~~~~~~i~~t~~~~~~---- 288 (390)
...++.+|..+....|+||||||+|.+...+........ .....+..+. ...++.+++++|.++.+
T Consensus 89 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l 168 (268)
T 2r62_A 89 ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPAL 168 (268)
T ss_dssp SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGG
T ss_pred HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhH
Confidence 777788999999999999999999999876533221100 0000010000 11224456677766432
Q ss_pred -HhHHH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhh
Q psy11689 289 -RTKRE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADT 364 (390)
Q Consensus 289 -r~~~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~ 364 (390)
+..++ ....+|+...|..++.... ......+++++..+++.+.||+ |+||.+++++|+..|..++...|+.++
T Consensus 169 ~r~~Rf~~~i~i~~p~~~~r~~il~~~~-~~~~~~~~~~~~~la~~~~g~~--g~dl~~l~~~a~~~a~~~~~~~i~~~~ 245 (268)
T 2r62_A 169 MRPGRFDRQVLVDKPDFNGRVEILKVHI-KGVKLANDVNLQEVAKLTAGLA--GADLANIINEAALLAGRNNQKEVRQQH 245 (268)
T ss_dssp GSSSSSCCCCBCCCCCTTTHHHHHHHHT-SSSCCCSSCCTTTTTSSSCSSC--HHHHHHHHHHHHHTTSSSCCCSCCHHH
T ss_pred cCCCCCCeEEEecCcCHHHHHHHHHHHH-hcCCCCCccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhccCCcCHHH
Confidence 21111 1122445666666653222 1222346688999999999999 999999999999999888888999999
Q ss_pred hhhhHHHHhcC
Q psy11689 365 ANKPRIQRIGN 375 (390)
Q Consensus 365 ~~~~~~~~~~~ 375 (390)
+..++...+..
T Consensus 246 ~~~a~~~~~~~ 256 (268)
T 2r62_A 246 LKEAVERGIAG 256 (268)
T ss_dssp HHTSCTTCCCC
T ss_pred HHHHHHHHhhc
Confidence 98877554433
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.89 E-value=5.8e-23 Score=191.29 Aligned_cols=225 Identities=22% Similarity=0.334 Sum_probs=164.0
Q ss_pred cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+.+...|+ +++|+++.+.++++.... +..+..+.++++..+.+++|+||||||||+|+++++...+.++
T Consensus 8 ~~~~~~~~~---------~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 8 TEAPKVTFK---------DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp CCCCSCCGG---------GCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred cCCCCCCHH---------HhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345666777 999999999999998876 5677888888888888999999999999999999999998888
Q ss_pred hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------H----HHHHHhhcCCCcEEEec
Q psy11689 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------E----QTADNAKKPRIPRTNGG 273 (390)
Q Consensus 207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~----~~~~~~~~~~~~~i~~~ 273 (390)
+.+++.++...+.+...+.+..+|+.+....|+++++||++.+...+.. . .....+..... .
T Consensus 78 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-----~ 152 (254)
T 1ixz_A 78 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----D 152 (254)
T ss_dssp EEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-----T
T ss_pred EEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-----C
Confidence 8888887777777777788999999998888999999999987654321 1 11111111000 0
Q ss_pred cCHHHHHhcCchhHHHhHH-----Hh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHH
Q psy11689 274 YREQTADTANKPRIQRTKR-----EY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTA 345 (390)
Q Consensus 274 ~~~~~i~~t~~~~~~r~~~-----~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~ 345 (390)
.....++++++|+.+.+.+ +. ....|+...|..|+.... ......+++++..+|..++||+ |+||++++
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-~~~~~~~~~~~~~la~~~~G~~--~~dl~~~~ 229 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-RGKPLAEDVDLALLAKRTPGFV--GADLENLL 229 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHTCTTCC--HHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH-cCCCCCcccCHHHHHHHcCCCC--HHHHHHHH
Confidence 1112344556655532222 11 112455666766653222 1223356788999999999999 99999999
Q ss_pred HHHHHHHHHccccccChhhhhhhH
Q psy11689 346 NKPRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 346 ~~A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
++|+..|..++...||++|+.++.
T Consensus 230 ~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 230 NEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999998888899999998764
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.88 E-value=2.4e-23 Score=206.09 Aligned_cols=236 Identities=20% Similarity=0.271 Sum_probs=159.7
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccc
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQ 213 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~ 213 (390)
|...+....+++|+|.+.+++.+.+.+..+..+++.|..++ .++.++||+||||||||+||+++|.+++.+++.+++.+
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 33344455555999999999999999999888888887665 45789999999999999999999999999999999999
Q ss_pred ccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH------HHHHHhhcC--CCcEEEeccCHHHHHhcCch
Q psy11689 214 LYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE------QTADNAKKP--RIPRTNGGYREQTADTANKP 285 (390)
Q Consensus 214 ~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~------~~~~~~~~~--~~~~i~~~~~~~~i~~t~~~ 285 (390)
+...+.|..+..++.+|..+...+|+||||||+|.++..+... .....+... +.. .....++.+|++||++
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ-SAGDDRVLVMGATNRP 262 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEEEEEESCG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc-ccCCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999997654321 111111000 000 0001223345566654
Q ss_pred hHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc----
Q psy11689 286 RIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR---- 355 (390)
Q Consensus 286 ~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r---- 355 (390)
+.+...+ .....+++...+..|+............+.++..+++.++||+ ++||..|+..|+..+.++
T Consensus 263 ~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~--~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 263 QELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYS--GSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp GGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCC--HHHHHHHHHHHTTHHHHTSCCC
T ss_pred hhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhhhhh
Confidence 4321111 1122245566666665332222222234456778999999999 999999999999999877
Q ss_pred --------cccccChhhhhhhHHHHh
Q psy11689 356 --------EYREQTADTANKPRIQRI 373 (390)
Q Consensus 356 --------~~~~i~~~~~~~~~~~~~ 373 (390)
....|+.+||.+++-...
T Consensus 341 ~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 341 QVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp ---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhhccchhhcCCcCHHHHHHHHHHcC
Confidence 345789999988875433
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.87 E-value=1e-21 Score=185.52 Aligned_cols=224 Identities=23% Similarity=0.353 Sum_probs=161.9
Q ss_pred CccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 130 ERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 130 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
+.+.|+ +++|.++++++++..... +..+..+.++++..+.+++|+||||||||||+++++...+.+++.+
T Consensus 35 ~~~~~~---------~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 35 PKVTFK---------DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp CCCCGG---------GSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHH---------HhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 556666 999999999999998876 5667788888888888899999999999999999999998888888
Q ss_pred ccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHh-hcC-CCcEEEeccCHHH
Q psy11689 210 SAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNA-KKP-RIPRTNGGYREQT 278 (390)
Q Consensus 210 ~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~-~~~-~~~~i~~~~~~~~ 278 (390)
++.++...+.+...+.+..+|+.+....|+++++||++.+...+.. ......+ ... +. ........
T Consensus 105 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg---~~~~~~i~ 181 (278)
T 1iy2_A 105 SGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF---EKDTAIVV 181 (278)
T ss_dssp EHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC---CTTCCEEE
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC---CCCCCEEE
Confidence 8877776677777788899999998889999999999876543211 1111111 100 00 00011223
Q ss_pred HHhcCchhHHHhHH-----Hh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689 279 ADTANKPRIQRTKR-----EY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI 350 (390)
Q Consensus 279 i~~t~~~~~~r~~~-----~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~ 350 (390)
++++++|+++.+.+ +. ...+|+...|..|+.... ......+++++..+|..++||+ |+||++++++|+.
T Consensus 182 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-~~~~~~~~~~~~~la~~~~G~~--~~dl~~l~~~a~~ 258 (278)
T 1iy2_A 182 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-RGKPLAEDVDLALLAKRTPGFV--GADLENLLNEAAL 258 (278)
T ss_dssp EEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHH
T ss_pred EEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH-ccCCCCcccCHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 45566655533222 11 112445666766653222 1223356788999999999999 9999999999999
Q ss_pred HHHHccccccChhhhhhhH
Q psy11689 351 QRTKREYREQTADTANKPR 369 (390)
Q Consensus 351 ~a~~r~~~~i~~~~~~~~~ 369 (390)
.|..++...|+++|+.++.
T Consensus 259 ~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 259 LAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHTTCCSBCHHHHHHHT
T ss_pred HHHHhCCCCcCHHHHHHHh
Confidence 9998888899999998763
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.81 E-value=7.8e-20 Score=196.29 Aligned_cols=210 Identities=23% Similarity=0.338 Sum_probs=158.9
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~ 219 (390)
...+++|+|++.+++.+.+.+.+++.+++.|+++++.++.++||+||||||||+|++++|.+++.+++.+++.++...+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh------H----HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHH
Q psy11689 220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY------R----EQTADNAKKPRIPRTNGGYREQTADTANKPRIQR 289 (390)
Q Consensus 220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~------~----~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r 289 (390)
++.++.++.+|+.+....|+++|+||++.++..+. . ......+..... ...+.+++++|+++.+.
T Consensus 280 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-----~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-----RAHVIVMAATNRPNSID 354 (806)
T ss_dssp THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-----TSCCEEEEECSCTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-----cccEEEecccCCchhcC
Confidence 99999999999999999999999999999987532 1 111121111100 01222344555544322
Q ss_pred hHHH--------hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc
Q psy11689 290 TKRE--------YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY 357 (390)
Q Consensus 290 ~~~~--------~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~ 357 (390)
+.+. ....++....|..|+... ..+.....+.++..++..++||+ ++|+..++.+|++.+.++..
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~-~~~~~l~~~~~l~~la~~t~g~~--g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIH-TKNMKLADDVDLEQVANETHGHV--GADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHT-TTTSCCCTTCCTHHHHHSCSSCC--HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHH-HhcCCCcccchhHHHHHhhcCcc--hHHHHHHHHHHHHHHHhhhc
Confidence 2111 111244556666665322 22233456788999999999999 99999999999999877643
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.72 E-value=6.3e-19 Score=167.89 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=110.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHH----HhcCCeEEEEcCCCCC
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA----RLAAPAILFIDEIERT 249 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A----~~~~p~il~lDEid~~ 249 (390)
+.++|.++||+||||||||+|++++|++++.+++.++++++...+.|..+..++.+|..| +..+|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999998 5779999999999998
Q ss_pred CChhhHH------------HHHHHhhcCCCc------EEEeccCHHHHHhcCchh-----HHHhHHHh-hhhcCCchhHH
Q psy11689 250 YNCEYRE------------QTADNAKKPRIP------RTNGGYREQTADTANKPR-----IQRTKREY-REQTADTAHKT 305 (390)
Q Consensus 250 l~~r~~~------------~~~~~~~~~~~~------~i~~~~~~~~i~~t~~~~-----~~r~~~~~-l~~l~~~~~r~ 305 (390)
.+.+... .....+...... ......++.+|+|||+++ +.|+.++. ...+|+...|.
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~ 191 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 191 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECCCHHHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCcCHHHHH
Confidence 8744311 111111111100 112334567788888764 34433322 12367777887
Q ss_pred HhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHH
Q psy11689 306 RISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNAN 343 (390)
Q Consensus 306 ~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~ 343 (390)
.|+..... ..++++..+++.++||+ |+||..
T Consensus 192 ~Il~~~~~-----~~~~~~~~l~~~~~~~~--~~~l~~ 222 (293)
T 3t15_A 192 GVCTGIFR-----TDNVPAEDVVKIVDNFP--GQSIDF 222 (293)
T ss_dssp HHHHHHHG-----GGCCCHHHHHHHHHHSC--SCCHHH
T ss_pred HHHHHhcc-----CCCCCHHHHHHHhCCCC--cccHHH
Confidence 77532211 23578899999999999 999864
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.64 E-value=8.8e-18 Score=169.57 Aligned_cols=103 Identities=24% Similarity=0.349 Sum_probs=89.2
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEA 222 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~ 222 (390)
+++|.+.+++.+..++... ..+..++.++||+||||||||++|+++|.+++ .+++.++++++...+.++.
T Consensus 38 ~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKT 109 (456)
T ss_dssp TEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHH
T ss_pred hccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhh
Confidence 9999999999998877542 12445778999999999999999999999999 8999999999999999998
Q ss_pred HHHHHHHHHHH---HhcCCeEEEEcCCCCCCChhhHH
Q psy11689 223 EQNVTQLFHRA---RLAAPAILFIDEIERTYNCEYRE 256 (390)
Q Consensus 223 ~~~i~~~f~~A---~~~~p~il~lDEid~~l~~r~~~ 256 (390)
+. ++.+|..| +..+|+|||+||+|+++..+...
T Consensus 110 ~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 110 EV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp HH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----
T ss_pred HH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCC
Confidence 87 89999999 88899999999999999877554
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.56 E-value=8.2e-15 Score=139.54 Aligned_cols=104 Identities=25% Similarity=0.398 Sum_probs=85.9
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCC---CCceEEEEcCCCChHHHHHHHHHHhhcc-------chhccccccc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIP---KPKGILLYGPPGCAKTSLVRTLAAHSVY-------RVLAASAAQL 214 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~La~aia~~~~~-------~~~~i~~~~~ 214 (390)
+++|++.+++.+.+.+..+. .+..++..++. ++.++||+||||||||++++++|..++. +++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999988743 35555555443 3457999999999999999999988753 7888899999
Q ss_pred cCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 215 YSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 215 ~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
...+.|.....+..+|..+ .++||||||++.+...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~ 145 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRP 145 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCC
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccC
Confidence 9999998888888888876 5789999999998743
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.48 E-value=5.9e-14 Score=136.88 Aligned_cols=215 Identities=14% Similarity=0.099 Sum_probs=125.5
Q ss_pred CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhccccccccCcch-
Q psy11689 143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASAAQLYSPYV- 219 (390)
Q Consensus 143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~~~~~~~~~- 219 (390)
++++.|.+..++.+..+.... . .+..++.++||+||||||||++++++|..++. +++.+.+..+...+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMS 114 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSC
T ss_pred hhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccc
Confidence 349999999988876655431 1 12345689999999999999999999999874 555555544332221
Q ss_pred ------------------------------------------------hhHHHHHHHHHHHHHh---------cCCeEEE
Q psy11689 220 ------------------------------------------------GEAEQNVTQLFHRARL---------AAPAILF 242 (390)
Q Consensus 220 ------------------------------------------------g~~~~~i~~~f~~A~~---------~~p~il~ 242 (390)
+.....++..|..+.. ..|+|||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 1212344445544432 1278999
Q ss_pred EcCCCCCCChhhHHHHHHHhhcCCCcEE-Eecc-CHHHHHhc--Cc-----hhHHHhHHHhhhhcC--CchhHHHhhccc
Q psy11689 243 IDEIERTYNCEYREQTADNAKKPRIPRT-NGGY-REQTADTA--NK-----PRIQRTKREYREQTA--DTAHKTRISRTN 311 (390)
Q Consensus 243 lDEid~~l~~r~~~~~~~~~~~~~~~~i-~~~~-~~~~i~~t--~~-----~~~~r~~~~~l~~l~--~~~~r~~I~~~n 311 (390)
|||++.+. ....+.....+.......+ ..+. ....+.++ +. +.+.+.+.. ..++ +..++..++...
T Consensus 195 IDEi~~l~-~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~--i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 195 IDEVHMLD-IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI--VSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp EESGGGSB-HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE--EEECCCCHHHHHHHHHHH
T ss_pred EhhccccC-hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE--EEecCCCHHHHHHHHHHH
Confidence 99999874 3333333344433332222 2222 22222222 11 222221111 1222 344444443221
Q ss_pred ccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689 312 RGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRI 370 (390)
Q Consensus 312 ~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~ 370 (390)
........++..+..+++.+.+.+ .+++.+++..|...|..++...|+.+++.++.-
T Consensus 272 ~~~~~~~~~~~~l~~l~~~~~~G~--~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 272 CEEEDVEMSEDAYTVLTRIGLETS--LRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp HHHTTCCBCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 111122223334567788887667 999999999999999999999999999998864
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.46 E-value=1.7e-14 Score=135.25 Aligned_cols=199 Identities=12% Similarity=0.103 Sum_probs=110.3
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc-hhhHH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY-VGEAE 223 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~-~g~~~ 223 (390)
.+.|.....+.+...... ....+...+..++.++||+||||||||++|+++|...+.+++.+++++.+... .+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp CCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred CCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 455555544444432111 12233334456788999999999999999999999999999988877644332 23334
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChh-----hHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhH--H---H
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCE-----YREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK--R---E 293 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r-----~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~--~---~ 293 (390)
..++.+|..+...++++|||||++.+++.+ ........+....-.......++.+++++|.++.+..+ . .
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~ 190 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS 190 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSS
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccc
Confidence 677889999988899999999999986432 12222222211100000011223346667766554331 1 1
Q ss_pred hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCC--cHHHHHHHHHH
Q psy11689 294 YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREY--SAQNANTANKP 348 (390)
Q Consensus 294 ~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~--gaDL~~l~~~A 348 (390)
....+|....+..|...... ....++.++..+++.+.||+.. ..++.+++..|
T Consensus 191 ~~i~~p~l~~r~~i~~i~~~--~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 191 TTIHVPNIATGEQLLEALEL--LGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp EEEECCCEEEHHHHHHHHHH--HTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred eEEcCCCccHHHHHHHHHHh--cCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 11124444443333211111 1112334567788888888311 33444444444
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.42 E-value=4.1e-13 Score=129.49 Aligned_cols=219 Identities=16% Similarity=0.129 Sum_probs=129.1
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA 212 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~ 212 (390)
.|...+....++++.|.+..++.+...+..... .-.+..++||+||||||||++|+++|...+.+++.++++
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 466666666777999999999999888865311 113566799999999999999999999999999888876
Q ss_pred cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEec-----------cCHHHHHh
Q psy11689 213 QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGG-----------YREQTADT 281 (390)
Q Consensus 213 ~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~-----------~~~~~i~~ 281 (390)
... ....+...+.. ...+++|||||++.+. ..........+.......+... .++.++++
T Consensus 90 ~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~-~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 90 MIE------KSGDLAAILTN--LSEGDILFIDEIHRLS-PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp GCC------SHHHHHHHHHT--CCTTCEEEEETGGGCC-HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred hcc------chhHHHHHHHh--ccCCCEEEEechhhcC-HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 542 12223333332 4578999999999875 3333333344433332221111 01334556
Q ss_pred cCchhHHHh-HHHh---hhhcC--CchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689 282 ANKPRIQRT-KREY---REQTA--DTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR 355 (390)
Q Consensus 282 t~~~~~~r~-~~~~---l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r 355 (390)
||+.....+ ++.. ...++ +..++..++...........++..+..+++.++|. ...+.+++..+...+...
T Consensus 161 tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~---~r~l~~~l~~~~~~a~~~ 237 (338)
T 3pfi_A 161 TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST---PRIALRLLKRVRDFADVN 237 (338)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC---HHHHHHHHHHHHHHHHHT
T ss_pred CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHHhh
Confidence 665433211 1111 11122 23444444321111111112222345677766665 688999999999888877
Q ss_pred cccccChhhhhhhHHH
Q psy11689 356 EYREQTADTANKPRIQ 371 (390)
Q Consensus 356 ~~~~i~~~~~~~~~~~ 371 (390)
+...++.+++..+.-.
T Consensus 238 ~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 238 DEEIITEKRANEALNS 253 (338)
T ss_dssp TCSEECHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHH
Confidence 7788999988776644
No 35
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3e-14 Score=140.02 Aligned_cols=85 Identities=20% Similarity=0.300 Sum_probs=75.1
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|.+.-.++|+|+|+|||++.+|+||+| ||||+ .|++|. +.++|++||++ +++.+++|+ +
T Consensus 280 Dg~~~~~~V~vIaATNrpd~LDpAllR--------------pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl-~ 344 (405)
T 4b4t_J 280 DGFETSKNIKIIMATNRLDILDPALLR--------------PGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL-R 344 (405)
T ss_dssp HTTTCCCCEEEEEEESCSSSSCHHHHS--------------TTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH-H
T ss_pred hccCCCCCeEEEeccCChhhCCHhHcC--------------CCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH-H
Confidence 555667899999999999999999999 99999 777666 47789999987 567889999 9
Q ss_pred HHHHhhcCCccccccccccccchhhh
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
.||+.|+||+|+||..+|.+|++.+.
T Consensus 345 ~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 345 KVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 36
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.36 E-value=2.9e-12 Score=128.57 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=111.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~ 252 (390)
+.+++|+||||+|||+|++++++.. +.+++++++.++...+.+.........|.......|+||||||++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5789999999999999999999887 66677777766544333322221122444444447999999999999875
Q ss_pred h-hHHHHHHHh---hcCCCcEEEeccCH-HHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689 253 E-YREQTADNA---KKPRIPRTNGGYRE-QTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTANK 324 (390)
Q Consensus 253 r-~~~~~~~~~---~~~~~~~i~~~~~~-~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl 324 (390)
+ ........+ ...+...+..+++. ..+.. -.+++...+. ......++...+..|+...........++-.+
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~-l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l 288 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSE-FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVL 288 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS-CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH-HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3 223232222 33344455555442 11111 1223322111 11112334455555542221111222233336
Q ss_pred chhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHH
Q psy11689 325 PRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQR 372 (390)
Q Consensus 325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~ 372 (390)
..|+..+.| + .+++.+++.++...|...+. .||.+++.++.-..
T Consensus 289 ~~la~~~~g-n--~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 289 NFVAENVDD-N--LRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHCCS-C--HHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHhcCC-C--HHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 778888876 5 89999999999988876653 69998887776443
No 37
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=5.3e-14 Score=138.85 Aligned_cols=85 Identities=21% Similarity=0.243 Sum_probs=73.6
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|...-.++|+|||+|||++.+|+||+| ||||+ .|++|. +.++|++||++ +++++++|+ +
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlR--------------pGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl-~ 378 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIR--------------PGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL-E 378 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSC--------------TTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH-H
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhc--------------CCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH-H
Confidence 445556789999999999999988888 99999 666666 47899999987 568889999 9
Q ss_pred HHHHhhcCCccccccccccccchhhh
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
.||+.|+||+|+||..+|.+|++.+.
T Consensus 379 ~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 379 TLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.33 E-value=3e-13 Score=139.24 Aligned_cols=225 Identities=19% Similarity=0.131 Sum_probs=118.8
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC--------
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-------- 216 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-------- 216 (390)
++.|++++++.+.+.+..... +..+ ++..++|+||||||||+|++++|..++.++..+++.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~------~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKL------TKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHH------SSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred HhccHHHHHHHHHHHHHHHHh------cccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence 789999999998776643211 1122 6788999999999999999999999998888777655332
Q ss_pred -cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEE--------eccCHHHHHhcC
Q psy11689 217 -PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTN--------GGYREQTADTAN 283 (390)
Q Consensus 217 -~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~--------~~~~~~~i~~t~ 283 (390)
.+.|...+.+...|..+....| |+||||++.+...+... ....+... ...... ...+..+++|+|
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~-~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN 232 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGD-PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN 232 (543)
T ss_dssp ---------CHHHHHHTTCSSSE-EEEEEESSSCC----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccC-HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence 4556666677778888877776 99999999988654321 11111110 111100 002334566777
Q ss_pred chhHHH-hHHHhh--hhcC--CchhHHHhhcccccc-----cCCCCCC--CCcchhhhcCCCCCCC--c----HHHHHHH
Q psy11689 284 KPRIQR-TKREYR--EQTA--DTAHKTRISRTNRGY-----REKTADT--ANKPRIPRTNRGYREY--S----AQNANTA 345 (390)
Q Consensus 284 ~~~~~r-~~~~~l--~~l~--~~~~r~~I~~~n~~~-----r~~~~~~--vdl~~la~~t~gfs~~--g----aDL~~l~ 345 (390)
+++... +++..+ ..++ +..++..|+...... ....... ++-+.+.....+|+.. . ..|+.+|
T Consensus 233 ~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~ 312 (543)
T 3m6a_A 233 NLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAIC 312 (543)
T ss_dssp STTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred ccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHH
Confidence 654321 111111 1222 344454444221100 0010111 1222232222233300 2 5566666
Q ss_pred HHHHHHHHHc--cccccChhhhhhhHHHHhcCccc
Q psy11689 346 NKPRIQRTKR--EYREQTADTANKPRIQRIGNLSQ 378 (390)
Q Consensus 346 ~~A~~~a~~r--~~~~i~~~~~~~~~~~~~~~~~~ 378 (390)
..|+..+... +...|+.+++.+..-...+..++
T Consensus 313 ~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~~e~ 347 (543)
T 3m6a_A 313 RKAAKAIVAEERKRITVTEKNLQDFIGKRIFRYGQ 347 (543)
T ss_dssp HHHHHHHHTTCCSCCEECTTTTHHHHCSCCSCCST
T ss_pred HHHHHHHHhcCCcceecCHHHHHHHhCCcccCchh
Confidence 6666666554 33478999999887665555544
No 39
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.1e-13 Score=137.70 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=73.8
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|...-.++|+|||+|||++.+|+||+| ||||+ .|++|. +.++|++||++ +.+++++++ +
T Consensus 341 Dg~~~~~~ViVIaATNrpd~LDpALlR--------------pGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl-~ 405 (467)
T 4b4t_H 341 DGFDPRGNIKVMFATNRPNTLDPALLR--------------PGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW-E 405 (467)
T ss_dssp HSSCCTTTEEEEEECSCTTSBCHHHHS--------------TTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH-H
T ss_pred hccCCCCcEEEEeCCCCcccCChhhhc--------------cccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH-H
Confidence 344456789999999999999999999 99999 666666 47889999987 567889999 9
Q ss_pred HHHHhhcCCccccccccccccchhhh
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
.||+.|+||+|+||..+|.+|++.+.
T Consensus 406 ~LA~~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 406 LISRLCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=6.8e-13 Score=135.81 Aligned_cols=123 Identities=19% Similarity=0.252 Sum_probs=86.6
Q ss_pred CccccccccCCCCCCCccChHHHHHHHHHHHhccccC-HHHhhhcCCC---CCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689 130 ERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKY-AREFERLAIP---KPKGILLYGPPGCAKTSLVRTLAAHSVYR 205 (390)
Q Consensus 130 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~-~~~~~~~~~~---~~~~vLl~GppGtGKT~La~aia~~~~~~ 205 (390)
....|.+++....++++.|.+..++.+.+.+...... +..++..+.. ++..+||+||||||||++|+++|.+++++
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3456888888888889999999999999988652221 2233333332 56789999999999999999999999999
Q ss_pred hhccccccccCcchhhHH-------HHHHHHHHHH-----HhcCCeEEEEcCCCCCCCh
Q psy11689 206 VLAASAAQLYSPYVGEAE-------QNVTQLFHRA-----RLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 206 ~~~i~~~~~~~~~~g~~~-------~~i~~~f~~A-----~~~~p~il~lDEid~~l~~ 252 (390)
++.+++++.......... ..+...|..+ ....+.||||||+|.+...
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~ 163 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG 163 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh
Confidence 999988776543321110 0012233333 2356899999999998764
No 41
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.6e-13 Score=134.97 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=75.0
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC--CCccCcccccc----ccCCcccchH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT--APQGRETELPF----TKLNEEVELS 76 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~--~~~~r~~~l~~----~~~~~~v~l~ 76 (390)
|++.-..||+|||+|||++.+|+||+| ||||+ .|++|. +.++|++|+.+ +.+.+++|+
T Consensus 304 dg~~~~~~v~vI~aTN~~~~LD~AllR--------------pGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl- 368 (428)
T 4b4t_K 304 DGFDQSTNVKVIMATNRADTLDPALLR--------------PGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL- 368 (428)
T ss_dssp HHSCSSCSEEEEEEESCSSSCCHHHHS--------------SSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH-
T ss_pred hCCCCCCCEEEEEecCChhhcChhhhc--------------CCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH-
Confidence 455556789999999999999999999 99999 888873 35788889887 668889999
Q ss_pred HHHHHhhcCCccccccccccccchhhhc
Q psy11689 77 ENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 77 ~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
+.||+.|.||+|+||..+|.+|++.+..
T Consensus 369 ~~lA~~t~G~sgadi~~l~~eA~~~a~r 396 (428)
T 4b4t_K 369 DSLIIRNDSLSGAVIAAIMQEAGLRAVR 396 (428)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987544
No 42
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.5e-13 Score=136.77 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=73.6
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|...-.++|+|+|+|||++.+|+||+| ||||+ .|++|. +.++|++||++ +++++++|+ +
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllR--------------pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl-~ 377 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLR--------------SGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW-Q 377 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCS--------------TTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH-H
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhc--------------CCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH-H
Confidence 444556789999999999999988888 99999 666666 47789999987 668899999 9
Q ss_pred HHHHhhcCCccccccccccccchhhh
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
.||+.|.||+|+||..+|.+|++.+.
T Consensus 378 ~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 378 ELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 43
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.1e-13 Score=135.90 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=73.2
Q ss_pred chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689 4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE 77 (390)
Q Consensus 4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~ 77 (390)
|+..-.++|+|||+|||++.+|+||+| ||||+ .|++|. +.++|.+||++ +++.+++|+ +
T Consensus 313 Dg~~~~~~vivI~ATNrp~~LDpAllR--------------pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl-~ 377 (437)
T 4b4t_L 313 DGFDNLGQTKIIMATNRPDTLDPALLR--------------PGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF-E 377 (437)
T ss_dssp HSSSCTTSSEEEEEESSTTSSCTTTTS--------------TTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH-H
T ss_pred hcccCCCCeEEEEecCCchhhCHHHhC--------------CCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH-H
Confidence 344456789999999999999999988 99999 666666 47789999987 567889999 9
Q ss_pred HHHHhhcCCccccccccccccchhhh
Q psy11689 78 NVQREEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 78 ~la~~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
.||+.|.||+|+||..+|.+|++.+.
T Consensus 378 ~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 378 AAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 44
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.26 E-value=3.6e-11 Score=109.22 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=97.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
.+..++|+||||||||+++++++.+.. .+++.+++.++....... +. ....|.+|||||++.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTAL--------LE--GLEQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--------HH--hccCCCEEEEeccccccCCH
Confidence 568899999999999999999998775 556666666554432111 11 12567899999999987644
Q ss_pred h-HHHHHHHh---hcCCCc-EEEeccCHHHHHhcCchhHHHhH---HHhhhhcCCchhHHHhhcccccccCCCCCCCCcc
Q psy11689 254 Y-REQTADNA---KKPRIP-RTNGGYREQTADTANKPRIQRTK---REYREQTADTAHKTRISRTNRGYREKTADTANKP 325 (390)
Q Consensus 254 ~-~~~~~~~~---~~~~~~-~i~~~~~~~~i~~t~~~~~~r~~---~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~ 325 (390)
. .......+ ...... .+..++....-.....+++...+ ....-..++..++..++...........++..+.
T Consensus 121 ~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (242)
T 3bos_A 121 LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGR 200 (242)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 2 22222221 111222 33333221100001112332222 1111112334455544422111111122222345
Q ss_pred hhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689 326 RIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 326 ~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
.+++.+.| + ..++.+++..+...|...+ ..||.+++.+++
T Consensus 201 ~l~~~~~g-~--~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l 240 (242)
T 3bos_A 201 FLLNRMAR-D--LRTLFDVLDRLDKASMVHQ-RKLTIPFVKEML 240 (242)
T ss_dssp HHHHHTTT-C--HHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHH
T ss_pred HHHHHccC-C--HHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHh
Confidence 67777766 5 7899999999988875444 579999987764
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.25 E-value=6.5e-12 Score=119.01 Aligned_cols=109 Identities=25% Similarity=0.380 Sum_probs=78.0
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC-cchhhH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERL-AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-PYVGEA 222 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-~~~g~~ 222 (390)
++.|.+.+++.+...+..+.........+ .-..+.++||+||||||||++++++|..++.+++.+++..+.. .+.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 68999999999988876532222111100 0135678999999999999999999999999999999888765 555543
Q ss_pred -HHHHHHHHHHH-----HhcCCeEEEEcCCCCCCChh
Q psy11689 223 -EQNVTQLFHRA-----RLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 223 -~~~i~~~f~~A-----~~~~p~il~lDEid~~l~~r 253 (390)
...++.+|..+ ....++||||||++.+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~ 132 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG 132 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc
Confidence 24455655532 12347899999999987653
No 46
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.24 E-value=3.2e-11 Score=105.11 Aligned_cols=100 Identities=25% Similarity=0.315 Sum_probs=74.9
Q ss_pred CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhcc
Q psy11689 140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAA 209 (390)
Q Consensus 140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i 209 (390)
...++++.|.++..+.+.+.+.. ..+.+++|+||||||||+++++++... +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 34455889988888887776532 346789999999999999999999886 5666777
Q ss_pred cccccc--CcchhhHHHHHHHHHHHHH-hcCCeEEEEcCCCCCCCh
Q psy11689 210 SAAQLY--SPYVGEAEQNVTQLFHRAR-LAAPAILFIDEIERTYNC 252 (390)
Q Consensus 210 ~~~~~~--~~~~g~~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~ 252 (390)
++..+. ..+.+.....+..++..+. ...|.||+|||++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA 130 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhcc
Confidence 766655 3445566667777887664 456889999999998754
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.24 E-value=1.2e-11 Score=124.16 Aligned_cols=213 Identities=15% Similarity=0.168 Sum_probs=117.9
Q ss_pred ccccccCCCCCCCccChHHHH---HHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 133 DWEGEEEGAFVPELGGLKGVR---ALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.|........++++.|.+..+ ..+...+.. ....+++|+||||||||++++++++.++.+++.+
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 344444556666999999888 666666643 1336899999999999999999999999888877
Q ss_pred ccccccCcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEecc-CHHHHHhcCc
Q psy11689 210 SAAQLYSPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGY-REQTADTANK 284 (390)
Q Consensus 210 ~~~~~~~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~-~~~~i~~t~~ 284 (390)
++... ....++.+|..+. ...+.||||||++.+-... .+.....+....+..+..+. ... ..-.
T Consensus 82 ~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-q~~LL~~le~~~v~lI~att~n~~---~~l~ 150 (447)
T 3pvs_A 82 SAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-QDAFLPHIEDGTITFIGATTENPS---FELN 150 (447)
T ss_dssp ETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------CCHHHHHTTSCEEEEEESSCGG---GSSC
T ss_pred EeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-HHHHHHHHhcCceEEEecCCCCcc---cccC
Confidence 65321 2233455555543 3578999999999975432 22233333333333332221 110 0001
Q ss_pred hhHHHhHHHhhhhcCCchhHHHhhccccc--c-----cCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc--
Q psy11689 285 PRIQRTKREYREQTADTAHKTRISRTNRG--Y-----REKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR-- 355 (390)
Q Consensus 285 ~~~~r~~~~~l~~l~~~~~r~~I~~~n~~--~-----r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r-- 355 (390)
+.+........-..++..+...++..... . .....++..+..+++.++|. ..++.+++..+...+...
T Consensus 151 ~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd---~R~lln~Le~a~~~a~~~~~ 227 (447)
T 3pvs_A 151 SALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD---ARRALNTLEMMADMAEVDDS 227 (447)
T ss_dssp HHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC---HHHHHHHHHHHHHHSCBCTT
T ss_pred HHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHhcccccC
Confidence 11211111111111223344333311111 0 11112223345677776664 678888888888876433
Q ss_pred cccccChhhhhhhHHHH
Q psy11689 356 EYREQTADTANKPRIQR 372 (390)
Q Consensus 356 ~~~~i~~~~~~~~~~~~ 372 (390)
+...||.+++.+.+-+.
T Consensus 228 ~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 228 GKRVLKPELLTEIAGER 244 (447)
T ss_dssp SCEECCHHHHHHHHTCC
T ss_pred CCCccCHHHHHHHHhhh
Confidence 44679999988776433
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.22 E-value=3e-11 Score=115.88 Aligned_cols=196 Identities=13% Similarity=0.096 Sum_probs=105.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
.+.+++|+||||||||+|++++++.+ +.+++++++.++...+.+.........|.... ..+++|||||++.+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh
Confidence 46789999999999999999999988 78888888877654444333322223343333 358999999999987643
Q ss_pred hHH-HHHHH---hhcCCCcEEEeccC-HHHHHhcCchhHHHhHHH-hhhhcC-CchhHHHhhcccccccCCCCCCCCcch
Q psy11689 254 YRE-QTADN---AKKPRIPRTNGGYR-EQTADTANKPRIQRTKRE-YREQTA-DTAHKTRISRTNRGYREKTADTANKPR 326 (390)
Q Consensus 254 ~~~-~~~~~---~~~~~~~~i~~~~~-~~~i~~t~~~~~~r~~~~-~l~~l~-~~~~r~~I~~~n~~~r~~~~~~vdl~~ 326 (390)
... ..... ........+..++. +..+. .-.+++...+.. ....++ +..++..|+...........++..+..
T Consensus 115 ~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~-~l~~~L~sR~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~ 193 (324)
T 1l8q_A 115 RTQIEFFHIFNTLYLLEKQIILASDRHPQKLD-GVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDY 193 (324)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT-TSCHHHHHHHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCChHHHH-HhhhHhhhcccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 222 22222 22223333433332 11111 112333322210 111222 344555544222111122222233566
Q ss_pred hhhcCCCCCCCcHHHHHHHHHHHHH---HHH-cccccc-ChhhhhhhHHHHhcCcccc
Q psy11689 327 IPRTNRGYREYSAQNANTANKPRIQ---RTK-REYREQ-TADTANKPRIQRIGNLSQR 379 (390)
Q Consensus 327 la~~t~gfs~~gaDL~~l~~~A~~~---a~~-r~~~~i-~~~~~~~~~~~~~~~~~~~ 379 (390)
+++.+ | . .+++.+++..+... +.. .+...+ |.+++.+.. +..+++...
T Consensus 194 l~~~~-g-~--~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~-~~~~~~~~~ 246 (324)
T 1l8q_A 194 LLENT-K-N--VREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFV-ANYYAVKVE 246 (324)
T ss_dssp HHHHC-S-S--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCHH
T ss_pred HHHhC-C-C--HHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHH-HHHhCCCHH
Confidence 77887 4 4 78888888887765 111 233457 777776653 344555443
No 49
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.22 E-value=2e-11 Score=116.59 Aligned_cols=213 Identities=16% Similarity=0.102 Sum_probs=120.3
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~ 218 (390)
....++++.|.+..++.+...+..... . -..+.+++|+||||||||+++++++..++.+++.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 344566999999999998887754211 0 124578999999999999999999999998888777765422
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEE-----------eccCHHHHHhcCchhH
Q psy11689 219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTN-----------GGYREQTADTANKPRI 287 (390)
Q Consensus 219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~-----------~~~~~~~i~~t~~~~~ 287 (390)
...+...|.. ....+.+|||||++.+... ........+.......+. ...+..++++++++..
T Consensus 77 ----~~~l~~~l~~-~~~~~~~l~lDEi~~l~~~-~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 150 (324)
T 1hqc_A 77 ----PGDLAAILAN-SLEEGDILFIDEIHRLSRQ-AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL 150 (324)
T ss_dssp ----HHHHHHHHTT-TCCTTCEEEETTTTSCCHH-HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSS
T ss_pred ----hHHHHHHHHH-hccCCCEEEEECCcccccc-hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCccc
Confidence 1222222222 1256889999999987633 222232333221111000 0012233445554322
Q ss_pred HH-hHHHh---hhh--cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689 288 QR-TKREY---REQ--TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT 361 (390)
Q Consensus 288 ~r-~~~~~---l~~--l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~ 361 (390)
.+ .++.. ... .++..+...++...........++..+..++..+.|+ ...+.+++..+...|...+...++
T Consensus 151 ~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~---~r~l~~~l~~~~~~a~~~~~~~i~ 227 (324)
T 1hqc_A 151 ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT---MRVAKRLFRRVRDFAQVAGEEVIT 227 (324)
T ss_dssp CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC---HHHHHHHHHHHTTTSTTTSCSCCC
T ss_pred CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHhcCCCCC
Confidence 11 11111 111 1223333333311111111112222345677788775 678899999888777666667788
Q ss_pred hhhhhhhHH
Q psy11689 362 ADTANKPRI 370 (390)
Q Consensus 362 ~~~~~~~~~ 370 (390)
.+++..+.-
T Consensus 228 ~~~~~~~~~ 236 (324)
T 1hqc_A 228 RERALEALA 236 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776653
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.20 E-value=1.1e-11 Score=132.30 Aligned_cols=228 Identities=12% Similarity=0.128 Sum_probs=131.2
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---------
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS--------- 202 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~--------- 202 (390)
..|........++++.|.+...+.+.+.+.. ..+.+++|+||||||||++++++|...
T Consensus 174 ~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~ 240 (758)
T 1r6b_X 174 TNLNQLARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM 240 (758)
T ss_dssp CBHHHHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGG
T ss_pred HhHHHHHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence 3455555566788999999888887776642 356789999999999999999999876
Q ss_pred -ccchhcccccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh----HHHHHHHhhcCCCcEEEeccC
Q psy11689 203 -VYRVLAASAAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY----REQTADNAKKPRIPRTNGGYR 275 (390)
Q Consensus 203 -~~~~~~i~~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~----~~~~~~~~~~~~~~~i~~~~~ 275 (390)
+..++.++...+. ..+.|..++.++.+|..+....++||||||++.+.+.+. .......+... +. ...
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~-l~----~~~ 315 (758)
T 1r6b_X 241 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LS----SGK 315 (758)
T ss_dssp TTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC-SS----SCC
T ss_pred cCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH-Hh----CCC
Confidence 3344555555554 356778888999999999888899999999999975432 22222222211 11 111
Q ss_pred HHHHHhcCchh----------HHHhHHHhhhhcCCchhHHHhhcccccc----cCCCCCCCCcchhhhcCCCCCC---Cc
Q psy11689 276 EQTADTANKPR----------IQRTKREYREQTADTAHKTRISRTNRGY----REKTADTANKPRIPRTNRGYRE---YS 338 (390)
Q Consensus 276 ~~~i~~t~~~~----------~~r~~~~~l~~l~~~~~r~~I~~~n~~~----r~~~~~~vdl~~la~~t~gfs~---~g 338 (390)
..+|++++.++ +.+.+....-..|+..++..|+...... .....++-.+..++..+.||.. .+
T Consensus 316 ~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 316 IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp CEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTT
T ss_pred eEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCc
Confidence 22233333332 2221111111133444554443211100 0111111223445555555420 15
Q ss_pred HHHHHHHHHHHHHHHH----ccccccChhhhhhhHHHHhcCccc
Q psy11689 339 AQNANTANKPRIQRTK----REYREQTADTANKPRIQRIGNLSQ 378 (390)
Q Consensus 339 aDL~~l~~~A~~~a~~----r~~~~i~~~~~~~~~~~~~~~~~~ 378 (390)
..+..++.+|...+.. .....++.+++.+++-. ..|++.
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~-~~~ip~ 438 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR-IARIPE 438 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH-HSCCCC
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHH-hcCCCc
Confidence 6788888887765543 23457888988877643 345543
No 51
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.20 E-value=5.8e-12 Score=123.01 Aligned_cols=108 Identities=28% Similarity=0.349 Sum_probs=81.7
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhh-cC-CCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc-chhh
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFER-LA-IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP-YVGE 221 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~-~~-~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~-~~g~ 221 (390)
.|.|.+.+++.+...+............ .. ..++.++||+||||||||++|+++|..++.+++.+++.++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4789999999998888543322211110 11 1256789999999999999999999999999999999887744 7776
Q ss_pred H-HHHHHHHHHHH----HhcCCeEEEEcCCCCCCCh
Q psy11689 222 A-EQNVTQLFHRA----RLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 222 ~-~~~i~~~f~~A----~~~~p~il~lDEid~~l~~ 252 (390)
. ...+..+|..+ ....++||||||+|.+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence 5 45677777765 4557899999999988765
No 52
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.20 E-value=6.4e-12 Score=125.31 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=83.8
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCC-CCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC-cchhh-
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIP-KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-PYVGE- 221 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-~~~g~- 221 (390)
+|+|.+.+|+.+..++..+++++..+..+... ++.++||+||||||||++++++|..++.+++.++++.+.. +|.|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 79999999999999998776666655544332 5688999999999999999999999999999999988887 58885
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
.++.++.+|..|.... ++||++.+.+..
T Consensus 96 ~e~~lr~lf~~a~~~~----~~De~d~~~~~~ 123 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLV----RQQEIAKNRARA 123 (444)
T ss_dssp THHHHHHHHHHHHHHH----HHHHHHSCC---
T ss_pred HHHHHHHHHHHHHhcc----hhhhhhhhhccc
Confidence 7888999999987654 479988876543
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.19 E-value=1.4e-11 Score=131.69 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=73.9
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~ 221 (390)
++.|.+..++.+...+....... . ....+..++||+||||||||++|+++|..+ +.+++.++++++...+...
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~---~-~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGL---K-DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTC---S-CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred cCcChHHHHHHHHHHHHHHHccc---C-CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 57788888888877775421110 0 001223379999999999999999999887 5789999999888776554
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~ 263 (390)
. ...+...+...++||||||++.+ .....+...+.+.
T Consensus 568 ~----~~l~~~~~~~~~~vl~lDEi~~~-~~~~~~~Ll~~le 604 (758)
T 3pxi_A 568 G----GQLTEKVRRKPYSVVLLDAIEKA-HPDVFNILLQVLE 604 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGS-CHHHHHHHHHHHH
T ss_pred c----chhhHHHHhCCCeEEEEeCcccc-CHHHHHHHHHHhc
Confidence 1 12333445567789999999986 4444444444443
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.18 E-value=5.5e-11 Score=115.79 Aligned_cols=215 Identities=14% Similarity=0.135 Sum_probs=119.0
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---------ccchhccccccc
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------VYRVLAASAAQL 214 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---------~~~~~~i~~~~~ 214 (390)
+++.|.+...+.+...+..... ...+..++|+||||||||+++++++... +.+++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 4789999988888877643211 2456789999999999999999999887 677777876543
Q ss_pred cCcc----------------hhh-HHHHHHHHHHHHHhc-CCeEEEEcCCCCCCChhhHHHHHHHh----h----cCCCc
Q psy11689 215 YSPY----------------VGE-AEQNVTQLFHRARLA-APAILFIDEIERTYNCEYREQTADNA----K----KPRIP 268 (390)
Q Consensus 215 ~~~~----------------~g~-~~~~i~~~f~~A~~~-~p~il~lDEid~~l~~r~~~~~~~~~----~----~~~~~ 268 (390)
...+ .+. .......++...... .|.+|||||++.+...+........+ . ...+.
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence 2211 111 122234444444333 48899999999986542122222221 1 12223
Q ss_pred EEEeccCHHHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhccccc--ccCCCCCCCCcchhhhcCC---CCCCCcHHH
Q psy11689 269 RTNGGYREQTADTANKPRIQRTKREYREQTA--DTAHKTRISRTNRG--YREKTADTANKPRIPRTNR---GYREYSAQN 341 (390)
Q Consensus 269 ~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~~--~r~~~~~~vdl~~la~~t~---gfs~~gaDL 341 (390)
.+..++...... .-.+.+.+.+......++ +..+...++..... ......++..+..+++.+. |. ...+
T Consensus 170 ~I~~t~~~~~~~-~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~---~r~~ 245 (387)
T 2v1u_A 170 LVGITNSLGFVE-NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGD---ARRA 245 (387)
T ss_dssp EEEECSCSTTSS-SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCC---HHHH
T ss_pred EEEEECCCchHh-hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccC---HHHH
Confidence 333333221000 001122211110111222 23344444321111 1112223333556666665 54 5778
Q ss_pred HHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689 342 ANTANKPRIQRTKREYREQTADTANKPRIQ 371 (390)
Q Consensus 342 ~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~ 371 (390)
.+++..|...|..++...++.+++.++.-.
T Consensus 246 ~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 246 LDLLRVAGEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 899999998888778889999999887644
No 55
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.17 E-value=1.4e-10 Score=111.07 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=80.7
Q ss_pred CccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 130 ERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 130 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
....|..++....++++.|.+..++.+...+.. -..+..+|++||||||||++++++|++.+.+++.+
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345788888888899999999999999888762 13456788899999999999999999999999888
Q ss_pred ccccccCcchhhHHHHHHHHHHHHHhc-----CCeEEEEcCCCCCCChhhHH
Q psy11689 210 SAAQLYSPYVGEAEQNVTQLFHRARLA-----APAILFIDEIERTYNCEYRE 256 (390)
Q Consensus 210 ~~~~~~~~~~g~~~~~i~~~f~~A~~~-----~p~il~lDEid~~l~~r~~~ 256 (390)
++++.. ...++..+...... .+.||||||++.+.+....+
T Consensus 80 ~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~ 124 (324)
T 3u61_B 80 NGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQR 124 (324)
T ss_dssp ETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHH
T ss_pred cccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHH
Confidence 875521 23344433333222 57899999999986333333
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=8.8e-11 Score=105.97 Aligned_cols=210 Identities=10% Similarity=0.053 Sum_probs=111.8
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc--
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA-- 211 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~-- 211 (390)
|...+....+.++.|.+..++.+...+... ..+..++|+||||+|||+++++++...+........
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 444444555558999999999888877531 234579999999999999999999887543211100
Q ss_pred --------------ccccCc--chhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcE
Q psy11689 212 --------------AQLYSP--YVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPR 269 (390)
Q Consensus 212 --------------~~~~~~--~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~ 269 (390)
.++... ........+..++..+. ...|.+|+|||++.+ +....+.....+... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-~~~~~~~l~~~l~~~~~~~~~ 159 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-SRHSFNALLKTLEEPPEHVKF 159 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-CHHHHHHHHHHHHSCCTTEEE
T ss_pred cccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccc-cHHHHHHHHHHHhcCCCceEE
Confidence 011100 00122234455555432 335799999999985 444444444444332 2223
Q ss_pred EEeccCHHHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHH
Q psy11689 270 TNGGYREQTADTANKPRIQRTKREYREQTA--DTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANK 347 (390)
Q Consensus 270 i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~ 347 (390)
+..++....+ .+.+.+.. ....++ +..+...++...........++..+..+++.+.| . ..++.+++..
T Consensus 160 i~~t~~~~~~----~~~l~~r~--~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~--~~~~~~~~~~ 230 (250)
T 1njg_A 160 LLATTDPQKL----PVTILSRC--LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S--LRDALSLTDQ 230 (250)
T ss_dssp EEEESCGGGS----CHHHHTTS--EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-C--HHHHHHHHHH
T ss_pred EEEeCChHhC----CHHHHHHh--hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C--HHHHHHHHHH
Confidence 3333322111 01111100 111122 2233333321111111111222335678888888 5 7888888888
Q ss_pred HHHHHHHccccccChhhhhhhH
Q psy11689 348 PRIQRTKREYREQTADTANKPR 369 (390)
Q Consensus 348 A~~~a~~r~~~~i~~~~~~~~~ 369 (390)
|... +...||.+++.+++
T Consensus 231 ~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 231 AIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHTT----TTSSBCHHHHHHHS
T ss_pred HHhc----cCceecHHHHHHHh
Confidence 7543 23479999887754
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.16 E-value=4.7e-11 Score=103.88 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=74.2
Q ss_pred CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhc
Q psy11689 139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLA 208 (390)
Q Consensus 139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~ 208 (390)
....++++.|.+...+.+.+.+.. ..+.+++|+||||||||+++++++..+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 344455888988877777766532 346789999999999999999999886 566666
Q ss_pred ccccccc--CcchhhHHHHHHHHHHHHHhc-CCeEEEEcCCCCCC
Q psy11689 209 ASAAQLY--SPYVGEAEQNVTQLFHRARLA-APAILFIDEIERTY 250 (390)
Q Consensus 209 i~~~~~~--~~~~g~~~~~i~~~f~~A~~~-~p~il~lDEid~~l 250 (390)
+++..+. ..+.+.....+..++..+... .|.+|||||++.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVV 128 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGS
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhc
Confidence 6665544 234455566777788777665 78899999999987
No 58
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=1.9e-10 Score=102.60 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=64.3
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cchhc
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YRVLA 208 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~~~~ 208 (390)
|...+....+.++.|.+..++.+.+.+... .+.+++|+||||+|||+++++++.... ..++.
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 444445555568999999999888877531 233599999999999999999998753 23333
Q ss_pred cccccccCcchhhHHHHHHHHHHHHH------hcCCeEEEEcCCCCCCC
Q psy11689 209 ASAAQLYSPYVGEAEQNVTQLFHRAR------LAAPAILFIDEIERTYN 251 (390)
Q Consensus 209 i~~~~~~~~~~g~~~~~i~~~f~~A~------~~~p~il~lDEid~~l~ 251 (390)
+++..... ...+...+.... ...+.+|+|||++.+..
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (226)
T ss_dssp EETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH
T ss_pred eccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH
Confidence 44332211 112222222221 25689999999998754
No 59
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.13 E-value=5.2e-11 Score=134.67 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=85.0
Q ss_pred CccChHHHHHHHHHHHhccccC----------HHHhhh------c------------CCCCCceEEEEcCCCChHHHHHH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKY----------AREFER------L------------AIPKPKGILLYGPPGCAKTSLVR 196 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~----------~~~~~~------~------------~~~~~~~vLl~GppGtGKT~La~ 196 (390)
+++|+++.|+.+.+.+.+++.+ ++.|+. . |.+.++.+|+|||||||||+||+
T Consensus 1021 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~ 1100 (1706)
T 3cmw_A 1021 SMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 1100 (1706)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred ecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHH
Confidence 9999999999999999998844 455554 2 24566679999999999999999
Q ss_pred HHHHhhccc---hhcccccccc------------Ccchhh----HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689 197 TLAAHSVYR---VLAASAAQLY------------SPYVGE----AEQNVTQLFHRARLAAPAILFIDEIERTYNCEY 254 (390)
Q Consensus 197 aia~~~~~~---~~~i~~~~~~------------~~~~g~----~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~ 254 (390)
+++.+.... .++++..+.. ..|.++ +++.++.+|..|+...|+++|+|+++++.+.+.
T Consensus 1101 ~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~ 1177 (1706)
T 3cmw_A 1101 QVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 1177 (1706)
T ss_dssp HHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHH
T ss_pred HHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcccc
Confidence 999877543 3333333322 556666 899999999999999999999999999998854
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.12 E-value=2.1e-11 Score=130.26 Aligned_cols=228 Identities=14% Similarity=0.081 Sum_probs=122.2
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccceeeCCC-CCccCccccccc--c--CCccc----chHHHHH
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPT-APQGRETELPFT--K--LNEEV----ELSENVQ 80 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~~i~ip~-~~~~r~~~l~~~--~--~~~~v----~l~~~la 80 (390)
.++.+|++||.+.. .....+||+|.+ ||..+.++. +.++|.++|... . ....+ +..+.++
T Consensus 314 ~~~~~I~at~~~~~---------~~~~~~d~aL~~--Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 314 GKIRVIGSTTYQEF---------SNIFEKDRALAR--RFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV 382 (758)
T ss_dssp CCCEEEEEECHHHH---------HCCCCCTTSSGG--GEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCeEEEEEeCchHH---------hhhhhcCHHHHh--CceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 35678888885321 012235666665 888777777 456777777641 0 01111 1236688
Q ss_pred HhhcCCcccc-----ccccccccchhhhcCCCCCCCCCCCCchhhHh-----hhcccccCcccccccc-----CCCCCCC
Q psy11689 81 REEEGIAGEN-----LQRGGGEEGIELREGGQRNGGEGGIGLNERVQ-----RIGEGREERRDWEGEE-----EGAFVPE 145 (390)
Q Consensus 81 ~~t~G~~g~~-----l~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~ 145 (390)
+.+.||.... +..++.+++........ ... ...+..... ...........|++.. ......+
T Consensus 383 ~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~-~~~--~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~ 459 (758)
T 1r6b_X 383 ELAVKYINDRHLPDKAIDVIDEAGARARLMPV-SKR--KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKML 459 (758)
T ss_dssp HHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSS-CCC--CCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTT
T ss_pred HHhhhhcccccCchHHHHHHHHHHHHHhcccc-ccc--CCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhh
Confidence 8888875442 22233343332221100 000 011111111 1111111122222100 0001125
Q ss_pred ccChHHHHHHHHHHHhccccCHHHhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc----
Q psy11689 146 LGGLKGVRALMEKTVEWPFKYAREFERLAI----PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP---- 217 (390)
Q Consensus 146 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~---- 217 (390)
+.|.+..++.+...+... ..+. .+..++||+||||||||++|+++|..++.+++.++++++...
T Consensus 460 v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp SCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCS
T ss_pred ccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHh
Confidence 778888877777766431 1111 234579999999999999999999999999999988876543
Q ss_pred --------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 218 --------YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 218 --------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
|+|..+. ..+........++||||||++.+- +...+...+.+
T Consensus 532 ~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-~~~~~~Ll~~l 581 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-PDVFNILLQVM 581 (758)
T ss_dssp SSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-HHHHHHHHHHH
T ss_pred hhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-HHHHHHHHHHh
Confidence 4443322 123444455678999999999863 33333333333
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.12 E-value=9.7e-11 Score=118.35 Aligned_cols=98 Identities=24% Similarity=0.327 Sum_probs=72.7
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh--------
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-------- 202 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-------- 202 (390)
...|........++++.|.+...+.+.+.+.. ....++||+||||||||++++++|..+
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~ 233 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI 233 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 34565556667788999999999888877643 245689999999999999999999886
Q ss_pred --ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEc
Q psy11689 203 --VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFID 244 (390)
Q Consensus 203 --~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lD 244 (390)
+.+++.+++. ..+.|+.+..++.+|..+....|.|||+|
T Consensus 234 l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 234 LRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred hcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 5667777766 55666666778899999999999999999
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.11 E-value=9.6e-10 Score=107.21 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=119.9
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCc--eEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCc
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPK--GILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSP 217 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~ 217 (390)
+++.|-+...+.+...+...... ..+. .++|+||||+|||+++++++... +.+++.+++......
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 47899999888888877542211 2334 89999999999999999999887 566677775443211
Q ss_pred c----------------hhh-HHHHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhc------CCCcEEEec
Q psy11689 218 Y----------------VGE-AEQNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKK------PRIPRTNGG 273 (390)
Q Consensus 218 ~----------------~g~-~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~------~~~~~i~~~ 273 (390)
. .+. .......+..... ...|.||+|||++.+ +..........+.. ..+..+..+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~ 166 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVG 166 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence 0 011 1112222222222 245899999999998 44433333333321 244445555
Q ss_pred cCHHHHHhcCchhHHHhHHHhhhhcCC--chhHHHhhccccc--ccCCCCCCCCcchhhhcCCCC------CCCcHHHHH
Q psy11689 274 YREQTADTANKPRIQRTKREYREQTAD--TAHKTRISRTNRG--YREKTADTANKPRIPRTNRGY------REYSAQNAN 343 (390)
Q Consensus 274 ~~~~~i~~t~~~~~~r~~~~~l~~l~~--~~~r~~I~~~n~~--~r~~~~~~vdl~~la~~t~gf------s~~gaDL~~ 343 (390)
+........ .+.+.+.+......++. ..+...++..... ......++..+..+++.+.+. .-....+.+
T Consensus 167 ~~~~~~~~l-~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 167 HNDAVLNNL-DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp SSTHHHHTS-CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred CCchHHHHh-CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 554322222 22232222111122332 2223333211110 011122223345677777322 211567888
Q ss_pred HHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689 344 TANKPRIQRTKREYREQTADTANKPRIQ 371 (390)
Q Consensus 344 l~~~A~~~a~~r~~~~i~~~~~~~~~~~ 371 (390)
++..|...|..++...++.+++.++.-.
T Consensus 246 ~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 246 ILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 9999999888888888999998877644
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=3.1e-10 Score=110.29 Aligned_cols=214 Identities=13% Similarity=0.139 Sum_probs=117.9
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh------ccchhccccccccCc
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS------VYRVLAASAAQLYSP 217 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~------~~~~~~i~~~~~~~~ 217 (390)
+++.|.+...+.+.+.+..... -..+..++|+||||+|||+|+++++... +.+++.+++......
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence 4788988888888776643211 1457789999999999999999999887 667777765432110
Q ss_pred ----------------chhh-HHHHHHHHHHHHHhcC-CeEEEEcCCCCCCCh---hhHHHHHHHhh---cCCCcEEEec
Q psy11689 218 ----------------YVGE-AEQNVTQLFHRARLAA-PAILFIDEIERTYNC---EYREQTADNAK---KPRIPRTNGG 273 (390)
Q Consensus 218 ----------------~~g~-~~~~i~~~f~~A~~~~-p~il~lDEid~~l~~---r~~~~~~~~~~---~~~~~~i~~~ 273 (390)
..+. .......++....... |.||+|||++.+.+. ..-........ ...+..+..+
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 0111 2223444444444443 899999999998643 22222323332 2234445555
Q ss_pred cCHHHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhccccc--ccCCCCCCCCcchhhhcCC---CCCCCcHHHHHHHH
Q psy11689 274 YREQTADTANKPRIQRTKREYREQTA--DTAHKTRISRTNRG--YREKTADTANKPRIPRTNR---GYREYSAQNANTAN 346 (390)
Q Consensus 274 ~~~~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~~--~r~~~~~~vdl~~la~~t~---gfs~~gaDL~~l~~ 346 (390)
+........ .+.+.+.+......++ +..+...++..... ......++-.+..+++.+. |. ...+.+++.
T Consensus 171 ~~~~~~~~~-~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~---~r~~~~ll~ 246 (386)
T 2qby_A 171 NDVKFVDLL-DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD---ARRALDLLR 246 (386)
T ss_dssp SCGGGGGGC-TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC---HHHHHHHHH
T ss_pred CCCChHhhh-CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHH
Confidence 543221111 1222222211111222 23333334321110 0011111122344556555 54 566777999
Q ss_pred HHHHHHHHccccccChhhhhhhHH
Q psy11689 347 KPRIQRTKREYREQTADTANKPRI 370 (390)
Q Consensus 347 ~A~~~a~~r~~~~i~~~~~~~~~~ 370 (390)
.|...|...+...++.+++.++.-
T Consensus 247 ~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 247 VSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCccCHHHHHHHHH
Confidence 998888877778899999987653
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.06 E-value=1.5e-10 Score=125.19 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=74.6
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------c
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------V 203 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~ 203 (390)
|........++++.|.+.....+.+.+.. ..+.+++|+||||||||++++++|..+ +
T Consensus 160 l~~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~ 226 (854)
T 1qvr_A 160 LTRLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKG 226 (854)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTT
T ss_pred HHHHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcC
Confidence 44444566777999999888777776532 245679999999999999999999887 6
Q ss_pred cchhcccccccc--CcchhhHHHHHHHHHHHHHhc-CCeEEEEcCCCCCCChh
Q psy11689 204 YRVLAASAAQLY--SPYVGEAEQNVTQLFHRARLA-APAILFIDEIERTYNCE 253 (390)
Q Consensus 204 ~~~~~i~~~~~~--~~~~g~~~~~i~~~f~~A~~~-~p~il~lDEid~~l~~r 253 (390)
.+++.+++..+. ..+.|+.+..++.+|..+... .|+||||||++.+.+..
T Consensus 227 ~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~ 279 (854)
T 1qvr_A 227 KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAG 279 (854)
T ss_dssp CEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------
T ss_pred CeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccC
Confidence 778888887776 456778888899999998875 78999999999998654
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.06 E-value=9.2e-10 Score=106.26 Aligned_cols=210 Identities=18% Similarity=0.172 Sum_probs=112.5
Q ss_pred CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689 142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~ 221 (390)
.++++.|.+.+++.+...+..... . -.++..++|+||||+|||||++++|+..+.++...+++....
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~-----~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM-----R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-----H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh-----c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 334777777777777766543210 0 134578999999999999999999999987665444432211
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEe-c----------cCHHHHHhcCchhHH-H
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNG-G----------YREQTADTANKPRIQ-R 289 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~-~----------~~~~~i~~t~~~~~~-r 289 (390)
...+..++.. ...+.|+|+||++.+... ..+.....+.......+.. + .+...+.+++++..+ .
T Consensus 90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~ 165 (334)
T 1in4_A 90 -QGDMAAILTS--LERGDVLFIDEIHRLNKA-VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSS 165 (334)
T ss_dssp -HHHHHHHHHH--CCTTCEEEEETGGGCCHH-HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCH
T ss_pred -HHHHHHHHHH--ccCCCEEEEcchhhcCHH-HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCH
Confidence 1223333322 245689999999987642 2222222222111100000 0 001111223332211 1
Q ss_pred hHHHh---hhhcCC--chhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhh
Q psy11689 290 TKREY---REQTAD--TAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADT 364 (390)
Q Consensus 290 ~~~~~---l~~l~~--~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~ 364 (390)
.++.. ...++. ......++...........++..+..||+++.|. .+++.++++++...|..++...||.++
T Consensus 166 ~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~---~R~a~~ll~~~~~~a~~~~~~~It~~~ 242 (334)
T 1in4_A 166 PLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT---PRIAIRLTKRVRDMLTVVKADRINTDI 242 (334)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHHTCSSBCHHH
T ss_pred HHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 11111 112332 2333333211111111112222356778888875 678899999999888888778899998
Q ss_pred hhhhHHH
Q psy11689 365 ANKPRIQ 371 (390)
Q Consensus 365 ~~~~~~~ 371 (390)
+.++.-.
T Consensus 243 v~~al~~ 249 (334)
T 1in4_A 243 VLKTMEV 249 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 66
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.06 E-value=2.2e-10 Score=112.19 Aligned_cols=107 Identities=30% Similarity=0.399 Sum_probs=71.9
Q ss_pred CccChHHHHHHHHHHHhccccCHHH------------------hhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYARE------------------FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.|.|.+.+++.+...+..+...... ... ...++.++||+||||||||++|+++|..++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6899999999999887533332221 011 123567899999999999999999999999999
Q ss_pred hcccccccc-CcchhhH-HHHHHHHHHHH----HhcCCeEEEEcCCCCCCCh
Q psy11689 207 LAASAAQLY-SPYVGEA-EQNVTQLFHRA----RLAAPAILFIDEIERTYNC 252 (390)
Q Consensus 207 ~~i~~~~~~-~~~~g~~-~~~i~~~f~~A----~~~~p~il~lDEid~~l~~ 252 (390)
+.+++..+. ..+.|.. +..+...|..+ ....++||||||++.+...
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 988887765 3444443 33455555432 2346899999999998765
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=6.9e-10 Score=107.00 Aligned_cols=207 Identities=14% Similarity=0.085 Sum_probs=108.1
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR----- 205 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~----- 205 (390)
...|..++....++++.|.+.+++.+...+... ...+++|+||||||||+++++++...+.+
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 457888888888889999999998888776431 22349999999999999999999886532
Q ss_pred -hhccccccccCcchhhHHHHHHHHHHHHH----------------hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCC--
Q psy11689 206 -VLAASAAQLYSPYVGEAEQNVTQLFHRAR----------------LAAPAILFIDEIERTYNCEYREQTADNAKKPR-- 266 (390)
Q Consensus 206 -~~~i~~~~~~~~~~g~~~~~i~~~f~~A~----------------~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~-- 266 (390)
++.+++.+... ...++..+.... ...+.|||+||++.+... ..+.....+....
T Consensus 91 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~ 163 (353)
T 1sxj_D 91 RILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-AQSALRRTMETYSGV 163 (353)
T ss_dssp SEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTT
T ss_pred ceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-HHHHHHHHHHhcCCC
Confidence 33444433211 111111111111 124569999999987543 3333333333321
Q ss_pred CcEEEeccCHHHHHhcCchhHHHhHHHh--hhhcC--CchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHH
Q psy11689 267 IPRTNGGYREQTADTANKPRIQRTKREY--REQTA--DTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNA 342 (390)
Q Consensus 267 ~~~i~~~~~~~~i~~t~~~~~~r~~~~~--l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~ 342 (390)
...+..++... .+..++... ...+. ...+...++...........++..+..+++.+.|. ...+.
T Consensus 164 ~~~il~~~~~~--------~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~---~r~~~ 232 (353)
T 1sxj_D 164 TRFCLICNYVT--------RIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD---LRRGI 232 (353)
T ss_dssp EEEEEEESCGG--------GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC---HHHHH
T ss_pred ceEEEEeCchh--------hCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC---HHHHH
Confidence 11222222211 111111111 11111 12222222211111111112223356677777764 45566
Q ss_pred HHHHHHHHHHHHcccc-ccChhhhhhh
Q psy11689 343 NTANKPRIQRTKREYR-EQTADTANKP 368 (390)
Q Consensus 343 ~l~~~A~~~a~~r~~~-~i~~~~~~~~ 368 (390)
+++..++..+...+.. .||.+++.+.
T Consensus 233 ~~l~~~~~~~~~~~~~~~It~~~v~~~ 259 (353)
T 1sxj_D 233 TLLQSASKGAQYLGDGKNITSTQVEEL 259 (353)
T ss_dssp HHHHHTHHHHHHHCSCCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCccCccccHHHHHHH
Confidence 6677666665433222 6888887654
No 68
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.02 E-value=2.5e-10 Score=88.58 Aligned_cols=82 Identities=11% Similarity=0.011 Sum_probs=58.1
Q ss_pred hhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcccccc
Q psy11689 302 AHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNR 381 (390)
Q Consensus 302 ~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~ 381 (390)
..|..|+..... .....+++|+..||+.|+||| ||||+++|++|++.|++++...|+++||..++-+...|..++..
T Consensus 4 ~~R~~Il~~~~~-~~~~~~dvdl~~lA~~t~G~S--GADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 4 EGRANIFRIHSK-SMSVERGIRWELISRLCPNST--GAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp SHHHHHHHHHHT-TSCBCSCCCHHHHHHTCSSCC--HHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHC-CCCCCCccCHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 455555432221 122356899999999999999 99999999999999999999999999999999999999988877
Q ss_pred CCCcc
Q psy11689 382 SSPKK 386 (390)
Q Consensus 382 ~~~~~ 386 (390)
...+.
T Consensus 81 ~~~y~ 85 (88)
T 3vlf_B 81 TSRYM 85 (88)
T ss_dssp -----
T ss_pred hhHHh
Confidence 66553
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.99 E-value=5.8e-10 Score=108.80 Aligned_cols=215 Identities=12% Similarity=0.049 Sum_probs=112.6
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-----------ccchhccccc
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-----------VYRVLAASAA 212 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-----------~~~~~~i~~~ 212 (390)
+++.|.+...+.+...+..... -..+..++|+||||||||+++++++.++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 3789999999888887754221 1356789999999999999999999887 7777777765
Q ss_pred ccc-Cc-----------------chhh-HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEE
Q psy11689 213 QLY-SP-----------------YVGE-AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTN 271 (390)
Q Consensus 213 ~~~-~~-----------------~~g~-~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~ 271 (390)
... .. ..+. ....+..++..+.... .||||||++.+............+... .+..+.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~ 169 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIM 169 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCCcceEEEE
Confidence 432 10 0011 1222344444443333 499999999875432112202233222 222222
Q ss_pred eccCHHHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhcccc--cccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHH
Q psy11689 272 GGYREQTADTANKPRIQRTKREYREQTA--DTAHKTRISRTNR--GYREKTADTANKPRIPRTNRGYREYSAQNANTANK 347 (390)
Q Consensus 272 ~~~~~~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~--~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~ 347 (390)
.++...... .-.+.+.+.+.. ...++ +..+...++.... .......++..+..+++.+.++.-....+.+++..
T Consensus 170 ~t~~~~~~~-~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 170 ISNDINVRD-YMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp ECSSTTTTT-TSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred EECCCchHh-hhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 222210000 001111111100 11222 2334444432211 11111222233456677666332113456678888
Q ss_pred HHHHHHHccccccChhhhhhhHHHH
Q psy11689 348 PRIQRTKREYREQTADTANKPRIQR 372 (390)
Q Consensus 348 A~~~a~~r~~~~i~~~~~~~~~~~~ 372 (390)
|...|. +...|+.+++.+++-..
T Consensus 248 a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 248 AAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred HHHHhc--CCCccCHHHHHHHHHHH
Confidence 877765 55689999988876443
No 70
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.99 E-value=9.9e-10 Score=96.07 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=51.2
Q ss_pred hhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCcchhhHHHH-HHHHHHHHHhcCCeEEEEcC
Q psy11689 171 ERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSPYVGEAEQN-VTQLFHRARLAAPAILFIDE 245 (390)
Q Consensus 171 ~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~~~g~~~~~-i~~~f~~A~~~~p~il~lDE 245 (390)
.++.+..+.+++|+||||||||||++++++.. |..++.++..++...+....... ....+ ....+|.+|+|||
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~llilDE 108 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFL--KTVLNSPVLVLDD 108 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHH--HHHHTCSEEEEET
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHH--HHhcCCCEEEEeC
Confidence 34455678999999999999999999999776 44555555554433221110000 00111 1234789999999
Q ss_pred CCCC-CChhh
Q psy11689 246 IERT-YNCEY 254 (390)
Q Consensus 246 id~~-l~~r~ 254 (390)
++.. ++...
T Consensus 109 ~~~~~~~~~~ 118 (180)
T 3ec2_A 109 LGSERLSDWQ 118 (180)
T ss_dssp CSSSCCCHHH
T ss_pred CCCCcCCHHH
Confidence 9964 44433
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.98 E-value=1.6e-09 Score=115.64 Aligned_cols=97 Identities=25% Similarity=0.317 Sum_probs=72.4
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---------
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS--------- 202 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~--------- 202 (390)
..|........++++.|.+..++.+.+.+.. ..+.++||+||||||||++++++|..+
T Consensus 168 ~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l 234 (758)
T 3pxi_A 168 RDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (758)
T ss_dssp CBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred HHHHHHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhh
Confidence 4555555667788999999999988877643 356679999999999999999999886
Q ss_pred -ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEc
Q psy11689 203 -VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFID 244 (390)
Q Consensus 203 -~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lD 244 (390)
+.+++.+++ ...|.|+.+..++.+|..+....|+|||||
T Consensus 235 ~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 235 RDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred cCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc
Confidence 556666655 345667777889999999999999999999
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.92 E-value=3.7e-10 Score=114.64 Aligned_cols=203 Identities=12% Similarity=0.070 Sum_probs=103.7
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhccc-----cccccCc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAAS-----AAQLYSP 217 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~-----~~~~~~~ 217 (390)
.+.|.+.+++.+...+. .+.++||+||||||||+||+++|..++. ++..+. ..++++.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 46677777766554442 3468999999999999999999988742 222222 2333333
Q ss_pred chhhHHHHHHHHHHHHHhc---CCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcE---EEeccCHHHHHhcCc-hh----
Q psy11689 218 YVGEAEQNVTQLFHRARLA---APAILFIDEIERTYNCEYREQTADNAKKPRIPR---TNGGYREQTADTANK-PR---- 286 (390)
Q Consensus 218 ~~g~~~~~i~~~f~~A~~~---~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~---i~~~~~~~~i~~t~~-~~---- 286 (390)
+.+..... ...|..+... .++|+||||++.+ ++...+.....+....++. .......+++.+||. |+
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~ 165 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSS 165 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCT
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCcccc
Confidence 32221111 1122222111 4789999999874 4444444445443321110 011111233555554 22
Q ss_pred ---HHHhHH--HhhhhcCCchhHHHhhcccccccCCCC------------------CCCC-----cchhhhc--------
Q psy11689 287 ---IQRTKR--EYREQTADTAHKTRISRTNRGYREKTA------------------DTAN-----KPRIPRT-------- 330 (390)
Q Consensus 287 ---~~r~~~--~~l~~l~~~~~r~~I~~~n~~~r~~~~------------------~~vd-----l~~la~~-------- 330 (390)
+.+.+. ..++.++...++..|+........... ..+. .+.+++.
T Consensus 166 ~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r 245 (500)
T 3nbx_X 166 LEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLP 245 (500)
T ss_dssp THHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCC
Confidence 221110 001111122344445422211100000 0111 1222221
Q ss_pred -CCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhh
Q psy11689 331 -NRGYREYSAQNANTANKPRIQRTKREYREQTADTAN 366 (390)
Q Consensus 331 -t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~ 366 (390)
..|.| .+.+..+++.|.-.|..+++..++.+|+.
T Consensus 246 ~~~~iS--~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 246 DAPYVS--DRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp SSCCCC--HHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred CCCccc--hhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 35788 89999999999999999999999999988
No 73
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.91 E-value=3e-09 Score=101.33 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+..+++|...+|.|+++||+.+.+|......+.+.+.. ...+.+.++|++..+..+++
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~ 257 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQ 257 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCE
Confidence 345567888999999999999999999999988877766543 36788999999888776655
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.90 E-value=1.4e-09 Score=91.96 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=59.0
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE 221 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~ 221 (390)
++.|-....+.+.+.+... ...+..+||+||||||||++|++++..+ +.+++ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 4556666666666655431 1355679999999999999999999886 67888 888765543
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
......|..+ ...+|||||++.+-
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~ 89 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLT 89 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCC
Confidence 1223344444 45799999999874
No 75
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.89 E-value=7.2e-09 Score=95.06 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTA 279 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i 279 (390)
+..+..+++|...+|.++++||+.+.+|........+.+... +.+.+.++|.+...
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 209 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA 209 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 444568889999999999999999999999888777665432 78899999987643
No 76
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.89 E-value=2.1e-09 Score=101.82 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=67.3
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-----ccchh
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-----VYRVL 207 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-----~~~~~ 207 (390)
.|..++....++++.|.+..++.+...+.. ....+++|+||||+|||+++++++..+ +.+++
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 566667777777999999999888776542 122349999999999999999999885 34455
Q ss_pred ccccccccCcchhhHHHHHHHHHHHH-H-hcCCeEEEEcCCCCCC
Q psy11689 208 AASAAQLYSPYVGEAEQNVTQLFHRA-R-LAAPAILFIDEIERTY 250 (390)
Q Consensus 208 ~i~~~~~~~~~~g~~~~~i~~~f~~A-~-~~~p~il~lDEid~~l 250 (390)
.+++++..+ .......+....... . ...+.|++|||++.+.
T Consensus 73 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (319)
T 2chq_A 73 EMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (319)
T ss_dssp EEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC
T ss_pred EEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC
Confidence 566554321 111111122111010 1 1457899999999874
No 77
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.88 E-value=7.6e-09 Score=100.65 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.+|++||+.+.+|+.......+.+.. .+.+.+.++|.+..+.. |++
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDr 233 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDC 233 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 44456788999999999999999999999988877765543 37899999999987764 665
No 78
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.88 E-value=3.3e-09 Score=101.84 Aligned_cols=52 Identities=29% Similarity=0.127 Sum_probs=42.9
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~ 211 (390)
++.|.+..++.+...+.. +.++||+||||||||+|++++|..++.+++.+.+
T Consensus 28 ~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp TCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 788888888777665532 3589999999999999999999999888777665
No 79
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.87 E-value=5.6e-09 Score=101.35 Aligned_cols=207 Identities=10% Similarity=0.049 Sum_probs=106.5
Q ss_pred cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc--ccc
Q psy11689 134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA--ASA 211 (390)
Q Consensus 134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~--i~~ 211 (390)
|..++....++++.|.+..++.+...+... ..+..++|+||+|+|||++++++++..+..... ..+
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 444555666679999999999988877531 234578999999999999999999887542110 000
Q ss_pred --------------ccccCcch--hhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCC--CcE
Q psy11689 212 --------------AQLYSPYV--GEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKKPR--IPR 269 (390)
Q Consensus 212 --------------~~~~~~~~--g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~--~~~ 269 (390)
.++..-.. ......++.++..+. ...+.||+|||++.+- ....+.....+.... ...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-~~~~~~Ll~~le~~~~~~~~ 152 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKTLEEPPEHVKF 152 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-HHHHHHHHHHHHSCCSSEEE
T ss_pred cccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-HHHHHHHHHHHhcCCCceEE
Confidence 01100000 011123455555543 2347899999999864 333444444444431 222
Q ss_pred EEeccCHHHHHhcCchhHHHhHHHh--hhhcC--CchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHH
Q psy11689 270 TNGGYREQTADTANKPRIQRTKREY--REQTA--DTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTA 345 (390)
Q Consensus 270 i~~~~~~~~i~~t~~~~~~r~~~~~--l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~ 345 (390)
+..++.. ..+..++... ...+. +..+...++...........++..+..+++.+.|. ..++.+++
T Consensus 153 Il~~~~~--------~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~---~r~~~~~l 221 (373)
T 1jr3_A 153 LLATTDP--------QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS---LRDALSLT 221 (373)
T ss_dssp EEEESCG--------GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC---HHHHHHHH
T ss_pred EEEeCCh--------HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC---HHHHHHHH
Confidence 2233221 1111111111 01111 22233222211111111111222245677888774 67788888
Q ss_pred HHHHHHHHHccccccChhhhhhh
Q psy11689 346 NKPRIQRTKREYREQTADTANKP 368 (390)
Q Consensus 346 ~~A~~~a~~r~~~~i~~~~~~~~ 368 (390)
..+...+ ...|+.+++.+.
T Consensus 222 ~~~~~~~----~~~i~~~~v~~~ 240 (373)
T 1jr3_A 222 DQAIASG----DGQVSTQAVSAM 240 (373)
T ss_dssp HHHHHHT----TTCBCHHHHHHH
T ss_pred HHHHHhc----CCcccHHHHHHH
Confidence 7775442 245777666544
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.87 E-value=6e-10 Score=94.11 Aligned_cols=85 Identities=14% Similarity=0.249 Sum_probs=60.3
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHH
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~ 224 (390)
++.|.....+.+.+.+... . ..+..++|+||||||||++|++++..+. +++.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-------~----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-------A----KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-------H----TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-------h----CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 4667777777777766532 1 2456799999999999999999998887 88888887653322
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
....|..+ ...+|||||++.+-.
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l~~ 89 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQYSR 89 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTCCH
T ss_pred -hhhHHHhC---CCCeEEEeChHHCCH
Confidence 33445543 467999999998743
No 81
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.86 E-value=1e-08 Score=100.31 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=78.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------------------cchh----------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------------------YRVL---------------------- 207 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------------------~~~~---------------------- 207 (390)
++.+.+++.+.|.||+|||||||+++||.... +.++
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~ 102 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL 102 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHH
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHH
Confidence 56678999999999999999999999992210 0000
Q ss_pred -----------------ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----
Q psy11689 208 -----------------AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---- 264 (390)
Q Consensus 208 -----------------~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---- 264 (390)
.+....+...+..+ ..+..+..+++|...+|.++++||+.+.+|..........+..
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (381)
T 3rlf_A 103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (381)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh
Confidence 00001111111111 2345556888999999999999999999999887776655533
Q ss_pred CCCcEEEeccCHHHHHh-cCc
Q psy11689 265 PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 265 ~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+.+.+.++|....+.. +++
T Consensus 183 ~g~tii~vTHd~~ea~~~aDr 203 (381)
T 3rlf_A 183 LGRTMIYVTHDQVEAMTLADK 203 (381)
T ss_dssp HCCEEEEECSCHHHHHHHCSE
T ss_pred CCCEEEEEECCHHHHHHhCCE
Confidence 37899999999876554 554
No 82
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.86 E-value=2.7e-09 Score=82.28 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=59.7
Q ss_pred hcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHh
Q psy11689 297 QTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRI 373 (390)
Q Consensus 297 ~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~ 373 (390)
..|+...|..|+...... ....+++|+..||++|+||| ||||+++|++|++.|+++....|+++||..++-+..
T Consensus 9 ~~Pd~~~R~~IL~~~l~~-~~l~~dvdl~~LA~~T~G~S--GADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRK-MNLTRGINLRKIAELMPGAS--GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCHHHHHHHHHHHTTT-SEECTTCCCHHHHHTCSSCC--HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC-CCCCcccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 356677787775332221 12256899999999999999 999999999999999999999999999999986653
No 83
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=2.2e-09 Score=103.75 Aligned_cols=130 Identities=13% Similarity=0.123 Sum_probs=76.5
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHH-hccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch---hc
Q psy11689 133 DWEGEEEGAFVPELGGLKGVRALMEKTV-EWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV---LA 208 (390)
Q Consensus 133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~---~~ 208 (390)
.|..++....++++.|.+.+.+.+...+ .. ....+++|+||||+||||++++++++...+- +.
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 4777788888889999999888877665 21 1223399999999999999999998642110 00
Q ss_pred cc------------------cc---cccCcchhh-HHHHHHHHHHHHH--------------hcCCeEEEEcCCCCCCCh
Q psy11689 209 AS------------------AA---QLYSPYVGE-AEQNVTQLFHRAR--------------LAAPAILFIDEIERTYNC 252 (390)
Q Consensus 209 i~------------------~~---~~~~~~~g~-~~~~i~~~f~~A~--------------~~~p~il~lDEid~~l~~ 252 (390)
++ .. .+.....+. ....++..+..+. ..+|.|++|||++. ++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~ 148 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS-LTK 148 (354)
T ss_dssp ----------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS-SCH
T ss_pred ecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc-cCH
Confidence 00 00 000000010 1112334443332 33688999999999 777
Q ss_pred hhHHHHHHHhhcC--CCcEEEeccCH
Q psy11689 253 EYREQTADNAKKP--RIPRTNGGYRE 276 (390)
Q Consensus 253 r~~~~~~~~~~~~--~~~~i~~~~~~ 276 (390)
...+.....+... ....+..+|.+
T Consensus 149 ~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 149 DAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 7666666655443 34455556553
No 84
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.86 E-value=1.9e-09 Score=82.34 Aligned_cols=65 Identities=8% Similarity=0.007 Sum_probs=50.5
Q ss_pred CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCccccccCCCc
Q psy11689 319 ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPK 385 (390)
Q Consensus 319 ~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
.+++|+..||+.|+||| ||||+++|++|++.|++++...|+++||..+.-....|....+.+.+|
T Consensus 17 ~~~vdl~~lA~~t~G~S--GADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 17 APEADLDSLIIRNDSLS--GAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp CTTCCSTTTTTSSCCCC--HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC-----------
T ss_pred CCcCCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHhh
Confidence 56799999999999999 999999999999999999999999999999987776555444445444
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.85 E-value=2.5e-09 Score=80.79 Aligned_cols=73 Identities=8% Similarity=0.077 Sum_probs=59.5
Q ss_pred cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHh
Q psy11689 298 TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRI 373 (390)
Q Consensus 298 l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~ 373 (390)
+|+...|..|+..... .....+++|+..||+.|+||| ||||+++|++|++.|++++...|+++||..++-+.+
T Consensus 2 lPd~~~R~~Il~~~l~-~~~~~~~~dl~~la~~t~G~S--GADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 2 PPNEEARLDILKIHSR-KMNLTRGINLRKIAELMPGAS--GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCHHHHHHHHHHHHT-TSEECTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-CCCCCCccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4667777777643221 122256899999999999999 999999999999999999999999999999986654
No 86
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.84 E-value=1.4e-08 Score=98.61 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+ ...+.+.+.++|....+.. +++
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDr 208 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADR 208 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCE
Confidence 445568889999999999999999999998877765433 3457899999999876654 554
No 87
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.83 E-value=5e-09 Score=100.27 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=56.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhccccccccCcc----------------hhhHHHHHHHH
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAASAAQLYSPY----------------VGEAEQNVTQL 229 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i~~~~~~~~~----------------~g~~~~~i~~~ 229 (390)
..+.+++|+||||||||+++++++.++ .+.++.++|..+...+ .+...+.+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 578899999999999999999999887 3566777775543221 12234567777
Q ss_pred HHHH--HhcCCeEEEEcCCCCCC
Q psy11689 230 FHRA--RLAAPAILFIDEIERTY 250 (390)
Q Consensus 230 f~~A--~~~~p~il~lDEid~~l 250 (390)
|... ....+.|++|||+|.+.
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHhhhccCCceEEEEecHHHhh
Confidence 8764 45678999999999998
No 88
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.79 E-value=1.7e-08 Score=91.87 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTA 279 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i 279 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|....+
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 149 VAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 4666888899999999999999999888777665532 367889999986554
No 89
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.79 E-value=1.8e-08 Score=94.20 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhc------CCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLA------APAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~------~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|... +|.+|++||+.+.+|........+.+... ..+.+.++|.+..+.. |++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~ 217 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADR 217 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE
Confidence 4445678888888 99999999999999999888776655432 4688999999876653 554
No 90
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.79 E-value=2.9e-08 Score=96.56 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adr 203 (359)
T 2yyz_A 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASR 203 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 44456788999999999999999999999888777665533 37889999999876543 444
No 91
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.79 E-value=2.6e-08 Score=96.74 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 150 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr 215 (355)
T 1z47_A 150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADR 215 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCE
Confidence 34445778999999999999999999999888777665533 37889999999876554 444
No 92
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.78 E-value=1.4e-08 Score=95.27 Aligned_cols=61 Identities=10% Similarity=-0.010 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.+|++||+.+.+|+.......+.+.. .+.+.+.++|.+..+.. |++
T Consensus 148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~dr 213 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDN 213 (275)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCE
Confidence 33345777899999999999999999999988777665532 36788999998765543 443
No 93
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.77 E-value=3e-08 Score=92.09 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF 211 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 34677889999999999999999999988777665533 36788889998765544
No 94
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.77 E-value=2.8e-08 Score=96.71 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr 203 (362)
T 2it1_A 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR 203 (362)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 34445778999999999999999999999888777665533 26889999999866543 444
No 95
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.75 E-value=5.3e-09 Score=100.73 Aligned_cols=33 Identities=6% Similarity=-0.072 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689 338 SAQNANTANKPRIQRTKREYREQTADTANKPRI 370 (390)
Q Consensus 338 gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~ 370 (390)
...+.+++..|...|..+++..|+.+++.++.-
T Consensus 288 ~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 288 LRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 688999999999999888888999999988764
No 96
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.73 E-value=1.7e-08 Score=93.33 Aligned_cols=60 Identities=23% Similarity=0.181 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcC
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~ 283 (390)
+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|.+..+..++
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d 211 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNAD 211 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence 44556788899999999999999999999988877665533 3678889999865544333
No 97
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.73 E-value=9.5e-10 Score=103.30 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=66.7
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc-------ccCCcccchHHHHH
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF-------TKLNEEVELSENVQ 80 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~-------~~~~~~v~l~~~la 80 (390)
..++++++||+++.+|+|++| ||||+ .|.+|. +.++|++|++. ..+..++++ +.+|
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r--------------~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~-~~la 209 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILR--------------PGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNL-EAIA 209 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHS--------------TTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCH-HHHH
T ss_pred CCEEEEeecCChhhCCHhhcC--------------cccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCH-HHHH
Confidence 468999999999999999999 99999 666666 36788899875 235678999 8899
Q ss_pred Hhh--cCCccccccccccccchhhh
Q psy11689 81 REE--EGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 81 ~~t--~G~~g~~l~~~~~ea~~~~~ 103 (390)
..| +||+|+||..+|.++++.+.
T Consensus 210 ~~~~~~g~sgadl~~l~~~a~~~a~ 234 (274)
T 2x8a_A 210 GDLRCDCYTGADLSALVREASICAL 234 (274)
T ss_dssp TCSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HhhccCCcCHHHHHHHHHHHHHHHH
Confidence 975 59999999999999988644
No 98
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.73 E-value=4.2e-08 Score=95.03 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=76.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------------------cchhc---------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------------------YRVLA--------------------- 208 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------------------~~~~~--------------------- 208 (390)
++.+.+++.+.|.||+|||||||+++||.... +.++.
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999992210 00000
Q ss_pred ---------------cccccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCC
Q psy11689 209 ---------------ASAAQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRI 267 (390)
Q Consensus 209 ---------------i~~~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~ 267 (390)
+...++...+.. ++.+..+..+++|...+|.++++||+.+.+|..........+.. .+.
T Consensus 100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 179 (348)
T 3d31_A 100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179 (348)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 000001111111 12344556888999999999999999999999888777665533 378
Q ss_pred cEEEeccCHHHHHh-cCc
Q psy11689 268 PRTNGGYREQTADT-ANK 284 (390)
Q Consensus 268 ~~i~~~~~~~~i~~-t~~ 284 (390)
+.+.++|....+.. +++
T Consensus 180 tii~vTHd~~~~~~~adr 197 (348)
T 3d31_A 180 TVLHITHDQTEARIMADR 197 (348)
T ss_dssp EEEEEESCHHHHHHHCSE
T ss_pred EEEEEeCCHHHHHHhCCE
Confidence 99999999765543 443
No 99
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.73 E-value=9.7e-09 Score=78.50 Aligned_cols=57 Identities=7% Similarity=-0.035 Sum_probs=50.4
Q ss_pred CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcc
Q psy11689 319 ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLS 377 (390)
Q Consensus 319 ~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~ 377 (390)
.+++|+..||+.|+||| ||||+++|++|++.|+++....|+++||..+.-+..-+.+
T Consensus 20 ~~~vdl~~la~~t~G~S--GADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 20 SEEVDLEDYVARPDKIS--GADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CTTCCTHHHHTSSCCCC--HHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CcccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 46799999999999999 9999999999999999999899999999999877766655
No 100
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.72 E-value=3.2e-08 Score=96.65 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 150 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr 211 (372)
T 1v43_A 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR 211 (372)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 4777899999999999999999999888777665533 26889999999876543 444
No 101
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.72 E-value=2.6e-08 Score=94.31 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=68.5
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcch--
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYV-- 219 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~-- 219 (390)
++.|...+++.+...+....... . -...+...++|+||||||||++|+++|..+ +.+++.+++..+.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~---~-~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL---K-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC---S-CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC---C-CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 67888888888888776421110 0 011234579999999999999999999887 45677777765543211
Q ss_pred ----------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689 220 ----------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 220 ----------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~ 262 (390)
+... ...+.........+++||||++.+ +....+.....+
T Consensus 94 ~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l-~~~~~~~Ll~~l 143 (311)
T 4fcw_A 94 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKA-HPDVFNILLQML 143 (311)
T ss_dssp HHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGS-CHHHHHHHHHHH
T ss_pred HhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhc-CHHHHHHHHHHH
Confidence 1100 011222333445689999999986 333344444433
No 102
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.72 E-value=7.2e-08 Score=90.30 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcC
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTAN 283 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~ 283 (390)
+..+..+++|...+|.++++||+.+.+|........+.+... +.+.+.++|.+..+..++
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d 224 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAH 224 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCC
Confidence 445567889999999999999999999999988887766443 578889999876655444
No 103
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=2.4e-08 Score=94.65 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=69.2
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cch
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YRV 206 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~~ 206 (390)
..|...+....++++.|.+..++.+...+.. ....+++|+||||+|||+++++++.... .++
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 75 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGV 75 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCE
Confidence 3566666666677999999999998887753 1223399999999999999999998853 334
Q ss_pred hccccccccCcchhhHHHHHHHHHHHHH-------hcCCeEEEEcCCCCCCC
Q psy11689 207 LAASAAQLYSPYVGEAEQNVTQLFHRAR-------LAAPAILFIDEIERTYN 251 (390)
Q Consensus 207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~-------~~~p~il~lDEid~~l~ 251 (390)
+.+++++.. ....++..+.... ...+.||+|||++.+..
T Consensus 76 ~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 76 LELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp EEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred EEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 455544321 1233444444433 23488999999998754
No 104
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.71 E-value=5.2e-08 Score=89.62 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD 280 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~ 280 (390)
.+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 133 qRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp HHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 334777889999999999999999999988877666543 2678899999875543
No 105
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=3.7e-08 Score=93.51 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=68.5
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----c
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----R 205 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----~ 205 (390)
...|...+....++++.|.+..++.+...+.. ....+++|+||||+|||+++++++..... .
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 45677778888888999999999998887753 12335999999999999999999988642 2
Q ss_pred hhccccccccCcchhhHHHHHHHHHHHH-H-----hcCCeEEEEcCCCCCCC
Q psy11689 206 VLAASAAQLYSPYVGEAEQNVTQLFHRA-R-----LAAPAILFIDEIERTYN 251 (390)
Q Consensus 206 ~~~i~~~~~~~~~~g~~~~~i~~~f~~A-~-----~~~p~il~lDEid~~l~ 251 (390)
++.+++++.. ....++..+... . ...+.+|++||++.+..
T Consensus 79 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 79 FLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124 (327)
T ss_dssp EEEEETTCHH------HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH
T ss_pred eEEeeccccC------chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH
Confidence 3334433211 111112222111 1 14578999999998743
No 106
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.70 E-value=6.9e-08 Score=89.49 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=73.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----------cchh--------ccccc--------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----------YRVL--------AASAA-------------------- 212 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----------~~~~--------~i~~~-------------------- 212 (390)
++.+.++..+.|.||+|+|||||+++++.... +.++ ..+..
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 104 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence 45678899999999999999999999994321 0000 00000
Q ss_pred ---------------cccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---C-CCcEEE
Q psy11689 213 ---------------QLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---P-RIPRTN 271 (390)
Q Consensus 213 ---------------~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~-~~~~i~ 271 (390)
+....... ...+..+..+++|...+|.++++||+.+.+|........+.+.. . +.+.+.
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~ 184 (253)
T 2nq2_C 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184 (253)
T ss_dssp HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 00000000 12233445777899999999999999999999988777665533 2 678899
Q ss_pred eccCHHHHH
Q psy11689 272 GGYREQTAD 280 (390)
Q Consensus 272 ~~~~~~~i~ 280 (390)
.+|.+..+.
T Consensus 185 vtHd~~~~~ 193 (253)
T 2nq2_C 185 TTHQPNQVV 193 (253)
T ss_dssp EESCHHHHH
T ss_pred EecCHHHHH
Confidence 999876653
No 107
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.70 E-value=1.6e-08 Score=87.93 Aligned_cols=109 Identities=11% Similarity=0.140 Sum_probs=68.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHH------------HHHhhcc----chh----------------cccccccc-Ccch
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRT------------LAAHSVY----RVL----------------AASAAQLY-SPYV 219 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~a------------ia~~~~~----~~~----------------~i~~~~~~-~~~~ 219 (390)
+.+.++..+.|.||||||||||+++ +...... ..+ ........ ..+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV 83 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 4567899999999999999999994 3321100 000 00000000 1112
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----------------HHHHHHh---hcCCCcEEEeccCHHHHH
Q psy11689 220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----------------EQTADNA---KKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----------------~~~~~~~---~~~~~~~i~~~~~~~~i~ 280 (390)
....+..+..+++|....|.++++||+.+.++.+.. ....+.+ ...+.+.+..+|.+..+.
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVE 163 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhh
Confidence 233345556788999999999999999999998733 4444432 223788888999876554
Q ss_pred h
Q psy11689 281 T 281 (390)
Q Consensus 281 ~ 281 (390)
.
T Consensus 164 ~ 164 (171)
T 4gp7_A 164 E 164 (171)
T ss_dssp H
T ss_pred h
Confidence 3
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.70 E-value=8.1e-08 Score=84.20 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=64.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhccccccc---------------------------------cCcchh--hHHH
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQL---------------------------------YSPYVG--EAEQ 224 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~---------------------------------~~~~~g--~~~~ 224 (390)
.+.|.||+|+|||||+++++...+..+......+. ...+.. +..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 57899999999999999999887633221111100 011111 1234
Q ss_pred HHHHHHHHH-----HhcCCeEEEEcC--CCCCCChhhHHHHHHHhhcCCCcEEEecc
Q psy11689 225 NVTQLFHRA-----RLAAPAILFIDE--IERTYNCEYREQTADNAKKPRIPRTNGGY 274 (390)
Q Consensus 225 ~i~~~f~~A-----~~~~p~il~lDE--id~~l~~r~~~~~~~~~~~~~~~~i~~~~ 274 (390)
..+..+.+| ...+|.++++|| +...++..........+.....+.+..+|
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 455566675 789999999999 88999988888777777665555666665
No 109
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.69 E-value=2.5e-08 Score=91.88 Aligned_cols=61 Identities=23% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|++..+..+++
T Consensus 144 q~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~ 206 (243)
T 1mv5_A 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADK 206 (243)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCE
Confidence 44566888999999999999999999998876655554432 36788999998765544443
No 110
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.69 E-value=1.7e-08 Score=113.62 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
+.|+.+-.+++|...+|.|++|||+++.+|..++..+.+.+... ..|.+.++||+.++..+++
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~ 1284 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADC 1284 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCE
Confidence 34666778999999999999999999999999999998888664 6899999999988887776
No 111
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.69 E-value=6e-08 Score=94.18 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adr 210 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADR 210 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 33445777899999999999999999999988877665543 37889999999876544 444
No 112
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.69 E-value=9.3e-08 Score=89.13 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+..
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~ 224 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFARE 224 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 4667888999999999999999999888777665532 37888999998766553
No 113
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.68 E-value=4.3e-08 Score=101.62 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+.+.+|..++....+.+.. .+.+.+.++|++..+..+++
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~ 546 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADK 546 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCE
Confidence 355667889999999999999999999999998887776643 46889999999877665554
No 114
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.68 E-value=3.8e-09 Score=107.09 Aligned_cols=118 Identities=24% Similarity=0.331 Sum_probs=76.5
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
.+++++++||+++.+|+++++ +|||+ .|.+|. +..+|++||.. ..+..++++ +.+|+.|
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r--------------~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l-~~la~~t 403 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRR--------------FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANET 403 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH-HHHHHTC
T ss_pred CceEEEEecCCccccCHHHhC--------------CCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH-HHHHHHc
Confidence 479999999999888888877 99999 666666 47888898876 456678888 8899999
Q ss_pred cCCccccccccccccchhhhcCCCCC-C-CCCC----------C----------CchhhHhhhcccccCccccccccCCC
Q psy11689 84 EGIAGENLQRGGGEEGIELREGGQRN-G-GEGG----------I----------GLNERVQRIGEGREERRDWEGEEEGA 141 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~~~~~~~~-~-~~~~----------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (390)
.||++++|..+|.+++.......... . .... + .+.+..+++...+.+++.|+
T Consensus 404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~------ 477 (489)
T 3hu3_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE------ 477 (489)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred cCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHH------
Confidence 99999999999999887754332111 0 0000 0 12345667788889999999
Q ss_pred CCCCccChHH
Q psy11689 142 FVPELGGLKG 151 (390)
Q Consensus 142 ~~~~i~g~~~ 151 (390)
||||...
T Consensus 478 ---dig~~~~ 484 (489)
T 3hu3_A 478 ---DIGGRSH 484 (489)
T ss_dssp ----------
T ss_pred ---HcCCCcc
Confidence 9999643
No 115
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.67 E-value=4.2e-08 Score=101.99 Aligned_cols=62 Identities=23% Similarity=0.152 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.|+++||+.+.+|..++....+.+.. .+.+.+.++|++..+..+++
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~ 558 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADL 558 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence 456677899999999999999999999999988877665543 37889999999877666554
No 116
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.66 E-value=7.3e-08 Score=88.61 Aligned_cols=54 Identities=15% Similarity=0.018 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 34677888999999999999999999988777665533 4678899999875443
No 117
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.66 E-value=9.9e-08 Score=93.27 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+++|...+|.++++||+.+.+|..........+.. .+.+.+.++|....+.. +++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr 209 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR 209 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCE
Confidence 34777899999999999999999999888777665533 37889999999876554 444
No 118
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.66 E-value=9.1e-08 Score=87.32 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=76.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh---------------cc----------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL---------------AA---------------- 209 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~---------------~i---------------- 209 (390)
++.+.+++.+.|.||+|+|||||+++++..... .++ .+
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 107 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC 107 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHh
Confidence 456778999999999999999999999943210 000 00
Q ss_pred ccccccCc-------------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh-hc--CCCcEEEec
Q psy11689 210 SAAQLYSP-------------YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA-KK--PRIPRTNGG 273 (390)
Q Consensus 210 ~~~~~~~~-------------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~-~~--~~~~~i~~~ 273 (390)
...+.... ..=...+..+..+++|...+|.++++||+.+.+|........+.+ .. ...+.+..+
T Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vt 187 (229)
T 2pze_A 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187 (229)
T ss_dssp TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEEC
T ss_pred CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 00000000 001123455678889999999999999999999999988887753 22 256788899
Q ss_pred cCHHHHHhcCc
Q psy11689 274 YREQTADTANK 284 (390)
Q Consensus 274 ~~~~~i~~t~~ 284 (390)
|.+..+..+++
T Consensus 188 H~~~~~~~~d~ 198 (229)
T 2pze_A 188 SKMEHLKKADK 198 (229)
T ss_dssp CCHHHHHHCSE
T ss_pred CChHHHHhCCE
Confidence 98765544443
No 119
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.66 E-value=9.6e-08 Score=87.65 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=73.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh---------------cc----ccc---------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL---------------AA----SAA--------- 212 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~---------------~i----~~~--------- 212 (390)
++.+.++..+.|.||+|+|||||+++++..... .++ .+ ...
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 104 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC 104 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHH
Confidence 566789999999999999999999999944210 000 00 000
Q ss_pred cc--------------cCcch--hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---c--CCCcEEE
Q psy11689 213 QL--------------YSPYV--GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---K--PRIPRTN 271 (390)
Q Consensus 213 ~~--------------~~~~~--g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~--~~~~~i~ 271 (390)
.+ ..... =...+..+..+++|...+|.++++||+.+.+|........+.+. . .+.+.+.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvii 184 (237)
T 2cbz_A 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184 (237)
T ss_dssp TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEE
T ss_pred hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 00 00000 01234556788899999999999999999999998888877763 1 3567888
Q ss_pred eccCHHHH
Q psy11689 272 GGYREQTA 279 (390)
Q Consensus 272 ~~~~~~~i 279 (390)
++|+...+
T Consensus 185 vtH~~~~~ 192 (237)
T 2cbz_A 185 VTHSMSYL 192 (237)
T ss_dssp ECSCSTTG
T ss_pred EecChHHH
Confidence 88875443
No 120
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.66 E-value=1.8e-09 Score=112.07 Aligned_cols=37 Identities=11% Similarity=-0.126 Sum_probs=33.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689 332 RGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRI 370 (390)
Q Consensus 332 ~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~ 370 (390)
-+.+ .+.++++++.|.-.|..+++..++.+|+..|+-
T Consensus 549 ~~~s--~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 549 ILIT--PRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp BCSS--TTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred cccc--HHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 4677 899999999999999999999999999999873
No 121
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.65 E-value=8.3e-08 Score=99.41 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
+..+-.+++|...+|.++++||+.+.+|+.+.....+.+... +.+.+.++|++..+..+++
T Consensus 485 q~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~ 547 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE 547 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 445567889999999999999999999999988877766443 6788999999876655543
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.65 E-value=2.8e-08 Score=84.63 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
++..++|+||+|+|||+|+++++... |...++++..++... +...+|.+|+|||++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 67889999999999999999999876 545556665554432 224578999999999866544
No 123
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.65 E-value=4.4e-08 Score=96.31 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~ 284 (390)
..+..+..+++|...+|.++++||+.+.+|..........+... ..+.+..+|+...+..+++
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDr 222 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQ 222 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCE
Confidence 34566778999999999999999999999998888777766543 5788999998765555554
No 124
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.64 E-value=5.1e-08 Score=100.91 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.++.+-.+++|...+|.++++||+.+.+|+.......+.+.. ...+.+.++|++..+..+++
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~ 544 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADK 544 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence 355567888999999999999999999999988777665532 35788999999876655544
No 125
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.62 E-value=5.9e-08 Score=90.02 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcc
Q psy11689 142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPY 218 (390)
Q Consensus 142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~ 218 (390)
+|+++.|.......+.+.+.... ..+..++|+||||||||++|++++..+. .+++.++++.+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 34578888888777766664321 2356899999999999999999998875 678888887653211
Q ss_pred h-----hhHHHH-------HHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 219 V-----GEAEQN-------VTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 219 ~-----g~~~~~-------i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
. |..... ....|.. ....+|||||++.+-.
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM 114 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH
Confidence 1 000000 0011222 3468999999998754
No 126
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.61 E-value=9.3e-08 Score=88.97 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTA 279 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i 279 (390)
+..+..+++|...+|.++++||+.+.+|........+.+.. ...+.+.++|++..+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~ 217 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 44456788889999999999999999999888776655532 256788888876443
No 127
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.60 E-value=4.8e-08 Score=110.05 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
+.|+.+-.+++|...+|.|++|||+.+.+|..++....+.+.. .+.|.+.++|++.++..+++
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~ 621 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADL 621 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSE
T ss_pred HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCE
Confidence 4567778999999999999999999999999988777776654 37899999999998877775
No 128
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.60 E-value=7.7e-08 Score=99.66 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|++..+..+++
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~ 547 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE 547 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 345566888999999999999999999999998877766543 26788999998765544443
No 129
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.59 E-value=1.3e-07 Score=88.33 Aligned_cols=57 Identities=14% Similarity=-0.012 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+.
T Consensus 143 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 143 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTG
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 33455778889999999999999999999988777665532 3678889999865544
No 130
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.58 E-value=2e-07 Score=88.71 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=64.7
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcch--
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYV-- 219 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~-- 219 (390)
++.|.....+.+.+.+... ...+..+||+||||||||++|++++..+ +.+++.++|..+.....
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4667666666666665432 1346789999999999999999999865 57888888876532111
Q ss_pred -----------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689 220 -----------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263 (390)
Q Consensus 220 -----------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~ 263 (390)
|... .....|..| ...+|||||++.+-. .........+.
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~LDEi~~l~~-~~q~~Ll~~l~ 121 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEA---DGGTLFLDEIGDISP-LMQVRLLRAIQ 121 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHH---TTSEEEEESCTTCCH-HHHHHHHHHHH
T ss_pred HhcCccccccCchhh-hhcCHHHhc---CCCEEEEeccccCCH-HHHHHHHHHHh
Confidence 1100 111234333 357999999999753 33333444443
No 131
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.57 E-value=1.8e-07 Score=86.40 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=72.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---------ch-----------h-cc-ccccccCc------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---------RV-----------L-AA-SAAQLYSP------------ 217 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---------~~-----------~-~i-~~~~~~~~------------ 217 (390)
++.+.++..+.|.||+|+|||||+++++..... ++ + ++ ..+.++..
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 99 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH 99 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc
Confidence 456788999999999999999999999854210 00 0 00 00000000
Q ss_pred -----------------------chh--hHHHHHHHHHHHHHhcCCe-------EEEEcCCCCCCChhhHHHHHHHhhc-
Q psy11689 218 -----------------------YVG--EAEQNVTQLFHRARLAAPA-------ILFIDEIERTYNCEYREQTADNAKK- 264 (390)
Q Consensus 218 -----------------------~~g--~~~~~i~~~f~~A~~~~p~-------il~lDEid~~l~~r~~~~~~~~~~~- 264 (390)
... ...+..+..+++|....|. ++++||+.+.+|........+.+..
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 100 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp STTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 000 0123334567788888899 9999999999999988777665533
Q ss_pred --CCCcEEEeccCHHHHH
Q psy11689 265 --PRIPRTNGGYREQTAD 280 (390)
Q Consensus 265 --~~~~~i~~~~~~~~i~ 280 (390)
.+.+.+..+|.+..+.
T Consensus 180 ~~~g~tviivtHd~~~~~ 197 (249)
T 2qi9_C 180 SQQGLAIVMSSHDLNHTL 197 (249)
T ss_dssp HHTTCEEEEECSCHHHHH
T ss_pred HhCCCEEEEEeCCHHHHH
Confidence 3678899999876653
No 132
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.57 E-value=1.4e-07 Score=98.05 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.+..+-.+++|...+|.++++||+.+.+|........+.+.. ...+.+.++|++..+..+++
T Consensus 487 Gq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~ 550 (595)
T 2yl4_A 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANM 550 (595)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCE
Confidence 355566888999999999999999999999988877766643 26789999999877665554
No 133
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.56 E-value=2.2e-07 Score=86.29 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHH
Q psy11689 226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTA 279 (390)
Q Consensus 226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i 279 (390)
.+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+..+|.+..+
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 334777889999999999999999999988777665533 367888888876443
No 134
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=1.5e-07 Score=90.58 Aligned_cols=102 Identities=25% Similarity=0.303 Sum_probs=67.2
Q ss_pred ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----
Q psy11689 131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR----- 205 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~----- 205 (390)
...|..++....++++.|.+.+++.+...+... ...+++|+||||||||++++++|+....+
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEG-------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 346777777778889999999998888776531 12239999999999999999999886422
Q ss_pred hhccccccccCcchhhHHHHHHHHHHHHH------hcCCeEEEEcCCCCCCC
Q psy11689 206 VLAASAAQLYSPYVGEAEQNVTQLFHRAR------LAAPAILFIDEIERTYN 251 (390)
Q Consensus 206 ~~~i~~~~~~~~~~g~~~~~i~~~f~~A~------~~~p~il~lDEid~~l~ 251 (390)
+..++.++.. + ...++..+.... ...+.|+++||++.+-.
T Consensus 79 ~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 79 VLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN 124 (340)
T ss_dssp EEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH
T ss_pred EEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH
Confidence 2233332211 1 122333222221 12478999999998743
No 135
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.52 E-value=2.1e-07 Score=86.02 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|.+..+.
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILN 207 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGG
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 3344677888889999999999999999988877665533 3677888899765443
No 136
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.50 E-value=3.8e-07 Score=86.20 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=76.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh-------c------ccc----------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL-------A------ASA---------------- 211 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~-------~------i~~---------------- 211 (390)
++.+.++..+.|.||+|+|||||+++++..... .++ . +..
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~ 137 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 137 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhC
Confidence 566789999999999999999999999944210 000 0 000
Q ss_pred -ccccCcc-------------hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh-c--CCCcEEEecc
Q psy11689 212 -AQLYSPY-------------VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK-K--PRIPRTNGGY 274 (390)
Q Consensus 212 -~~~~~~~-------------~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~-~--~~~~~i~~~~ 274 (390)
.+..... .-...+..+..+++|...+|.++++||+.+.+|........+.+. . .+.+.+..+|
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtH 217 (290)
T 2bbs_A 138 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217 (290)
T ss_dssp CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECC
T ss_pred hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence 0000000 001234455688899999999999999999999999888877532 2 3578888999
Q ss_pred CHHHHHhcCc
Q psy11689 275 REQTADTANK 284 (390)
Q Consensus 275 ~~~~i~~t~~ 284 (390)
.+..+..+++
T Consensus 218 d~~~~~~~d~ 227 (290)
T 2bbs_A 218 KMEHLKKADK 227 (290)
T ss_dssp CHHHHHHSSE
T ss_pred CHHHHHcCCE
Confidence 8766554443
No 137
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.48 E-value=5.7e-08 Score=86.18 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=44.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH-HHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA-EQNVTQLFHRARLAAPAILFIDEIERT 249 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~A~~~~p~il~lDEid~~ 249 (390)
+.+++|+||||||||+|+++++..+ +.+++.+.++++........ .......+.... .+.+|+|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3789999999999999999999876 45555566655432221110 000122233222 3569999999664
No 138
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=1.7e-07 Score=97.41 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=37.3
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
++.|...+++.+...+. .+..++|+||||||||+|++++|..+.
T Consensus 42 ~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred eEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 88898888877776664 346899999999999999999998764
No 139
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.47 E-value=5.4e-07 Score=92.27 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=78.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhhcc------------ch----------------hcc---------------
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY------------RV----------------LAA--------------- 209 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~~------------~~----------------~~i--------------- 209 (390)
+.+.+++.+.|.||+|||||||+++++..... .+ +..
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 34678999999999999999999999943110 00 000
Q ss_pred -----ccccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHH
Q psy11689 210 -----SAAQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQT 278 (390)
Q Consensus 210 -----~~~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~ 278 (390)
...+.....+. ++.+..+.++++|...+|.|+++||+.+.+|........+.+.. .+.+.+.++|.+..
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 00000111111 13456677999999999999999999999999988777665543 46788999999877
Q ss_pred HHh-cCc
Q psy11689 279 ADT-ANK 284 (390)
Q Consensus 279 i~~-t~~ 284 (390)
+.. |++
T Consensus 449 ~~~~aDr 455 (538)
T 3ozx_A 449 HDYIADR 455 (538)
T ss_dssp HHHHCSE
T ss_pred HHHhCCE
Confidence 664 554
No 140
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.46 E-value=1.7e-07 Score=84.73 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=70.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cch------h-cc-cccccc------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRV------L-AA-SAAQLY------------------ 215 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~------~-~i-~~~~~~------------------ 215 (390)
++.+.++..+.|.||+|+|||||+++++.... .++ + ++ ..+.++
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 108 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV 108 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC
Confidence 45677899999999999999999999984311 000 0 00 000000
Q ss_pred -------------------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEE
Q psy11689 216 -------------------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTN 271 (390)
Q Consensus 216 -------------------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~ 271 (390)
..... ...+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.
T Consensus 109 ~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiii 188 (214)
T 1sgw_A 109 KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188 (214)
T ss_dssp CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEE
T ss_pred chHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 00000 12344456778889999999999999999999888776655533 2467777
Q ss_pred eccCHHH
Q psy11689 272 GGYREQT 278 (390)
Q Consensus 272 ~~~~~~~ 278 (390)
.+|.+..
T Consensus 189 vtHd~~~ 195 (214)
T 1sgw_A 189 SSREELS 195 (214)
T ss_dssp EESSCCT
T ss_pred EeCCHHH
Confidence 8887543
No 141
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.45 E-value=4.2e-07 Score=85.38 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC---CCcE--EEeccCHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP---RIPR--TNGGYREQTA 279 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~---~~~~--i~~~~~~~~i 279 (390)
..+++|...+|.++++||+.+.+|........+.+... +.+. +.++|.+..+
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGC
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHH
Confidence 46678889999999999999999998887776655332 5677 8888875443
No 142
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.45 E-value=3e-07 Score=103.38 Aligned_cols=62 Identities=21% Similarity=0.166 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
.++.+-.+++|...+|.|+++||+.+.+|..++......+.. .+.+.+.++|++..+..+++
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~ 593 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADV 593 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence 456667888999999999999999999999887776665532 47899999999998877665
No 143
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.44 E-value=2.2e-07 Score=88.56 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=54.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc--ccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA--AQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~--~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
++.++..++|+||||||||+|+.++|.+.+.++.+++. .+.+..+....++.+..++......+ +||||++..+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45677788999999999999999999876666555554 33333333444555555666655554 999999999865
Q ss_pred hh
Q psy11689 252 CE 253 (390)
Q Consensus 252 ~r 253 (390)
..
T Consensus 197 ~~ 198 (331)
T 2vhj_A 197 AA 198 (331)
T ss_dssp --
T ss_pred cc
Confidence 43
No 144
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.44 E-value=1.1e-06 Score=82.12 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC---CCcEEEeccCHHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP---RIPRTNGGYREQTAD 280 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~---~~~~i~~~~~~~~i~ 280 (390)
+..+..+++|...+|.++++||+.+.+|........+.+... +.+.+.++|.+..+.
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~ 228 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILD 228 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGG
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHH
Confidence 334456778888899999999999999999988887776543 577888999865544
No 145
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.43 E-value=2.6e-07 Score=99.87 Aligned_cols=112 Identities=20% Similarity=0.207 Sum_probs=68.2
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcc---
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPY--- 218 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~--- 218 (390)
++.|.+..++.+...+...... ... .-.+...+||+||||||||++|++++..+ +.+++.++++++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g---~~~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGG---CSC-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcc---cCC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHH
Confidence 4566666666666665431100 000 01233589999999999999999999988 7788888887765432
Q ss_pred ---------hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689 219 ---------VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263 (390)
Q Consensus 219 ---------~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~ 263 (390)
+|..+ ...+........++||||||++.+ +....+...+.+.
T Consensus 635 ~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-~~~~~~~Ll~~l~ 685 (854)
T 1qvr_A 635 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-HPDVFNILLQILD 685 (854)
T ss_dssp GC----------------CHHHHHHHCSSEEEEESSGGGS-CHHHHHHHHHHHT
T ss_pred HHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-CHHHHHHHHHHhc
Confidence 12211 122333444556789999999985 4444444444443
No 146
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.42 E-value=4.4e-07 Score=88.98 Aligned_cols=216 Identities=12% Similarity=0.041 Sum_probs=106.6
Q ss_pred CCccChHHHHHHHHHHH-hccccCHHHhhhcCCCCCceEEE--EcCCCChHHHHHHHHHHhh---------ccchhcccc
Q psy11689 144 PELGGLKGVRALMEKTV-EWPFKYAREFERLAIPKPKGILL--YGPPGCAKTSLVRTLAAHS---------VYRVLAASA 211 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~vLl--~GppGtGKT~La~aia~~~---------~~~~~~i~~ 211 (390)
..+.|-+...+.+.+.+ ...... . -..+..++| +||+|+|||+|++.++... ++.++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~------~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSG------A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTS------S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcC------C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 37888888888887776 432110 0 024567999 9999999999999999775 345556664
Q ss_pred ccccCc------c----------hhhHH-HHHHHHHHHHH-hcCCeEEEEcCCCCCCCh-----hhHHHHHHHhhc----
Q psy11689 212 AQLYSP------Y----------VGEAE-QNVTQLFHRAR-LAAPAILFIDEIERTYNC-----EYREQTADNAKK---- 264 (390)
Q Consensus 212 ~~~~~~------~----------~g~~~-~~i~~~f~~A~-~~~p~il~lDEid~~l~~-----r~~~~~~~~~~~---- 264 (390)
...... . .+... .....+..... ...|.||+|||++.+... ..-......+..
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 321110 0 01111 11222222221 356889999999987642 211111122221
Q ss_pred ---CCCcEEEeccCHHHHHhcC--chhHHHhHHHhhhhcCC--chhHHHhhcccc--cccCCCCCCCCcchhhhcCC---
Q psy11689 265 ---PRIPRTNGGYREQTADTAN--KPRIQRTKREYREQTAD--TAHKTRISRTNR--GYREKTADTANKPRIPRTNR--- 332 (390)
Q Consensus 265 ---~~~~~i~~~~~~~~i~~t~--~~~~~r~~~~~l~~l~~--~~~r~~I~~~n~--~~r~~~~~~vdl~~la~~t~--- 332 (390)
..+..+..++......... .+.+...+... ..++. ..+...++.... .......++..+..+++.+.
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFK-LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 1222232332221110000 01111111000 12222 223333321100 00011112122445667777
Q ss_pred ---CCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689 333 ---GYREYSAQNANTANKPRIQRTKREYREQTADTANKPRI 370 (390)
Q Consensus 333 ---gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~ 370 (390)
|. ...+..++..|...|..++...++.+++..++-
T Consensus 254 ~~~G~---p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 254 GGDGS---ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp TSCCC---HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred cCCCc---HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 64 567888888888888777777888888876653
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.41 E-value=2.3e-08 Score=94.93 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=65.4
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
.+++++++||+++.+|++++| ||||+ .|.+|. +.++|.+|+.. ..+..++++ +.+|..|
T Consensus 153 ~~v~vi~atn~~~~ld~al~r--------------~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~-~~la~~~ 217 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILR--------------PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-EFLAKMT 217 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH-HHHHHTC
T ss_pred CCEEEEEecCCccccChHHhc--------------CCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH-HHHHHHc
Confidence 479999999999988888887 99999 777777 46778888865 345678899 8899999
Q ss_pred cCCccccccccccccchhh
Q psy11689 84 EGIAGENLQRGGGEEGIEL 102 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~ 102 (390)
.||+|+||..+|.++....
T Consensus 218 ~g~sg~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 218 NGFSGADLTEICQRACKLA 236 (301)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998887653
No 148
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.41 E-value=9.7e-07 Score=82.14 Aligned_cols=53 Identities=15% Similarity=0.039 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD 280 (390)
Q Consensus 228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~ 280 (390)
..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|.+..+.
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 217 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4667888899999999999999999888777665432 3788999999876654
No 149
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.39 E-value=4.5e-07 Score=101.94 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~ 284 (390)
+.++.+-.+++|...+|.|+++||+.+.+|........+.+.. .+.+.+.++|++..+..+++
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dr 1238 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADL 1238 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCE
Confidence 3456677899999999999999999999999988877766643 36789999999877666554
No 150
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.35 E-value=5e-07 Score=84.03 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=63.9
Q ss_pred hhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc---hhcccccc--c-cC---cc-----hhhHHHHHHHHHHHHHhc
Q psy11689 171 ERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR---VLAASAAQ--L-YS---PY-----VGEAEQNVTQLFHRARLA 236 (390)
Q Consensus 171 ~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~---~~~i~~~~--~-~~---~~-----~g~~~~~i~~~f~~A~~~ 236 (390)
+++.+.++..++|.||+|+|||||+++++...... -+.+.... . .. .+ ++.....++..++++...
T Consensus 18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 18 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp HHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred HHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhh
Confidence 33336788999999999999999999999764321 01111100 0 00 00 111112356788888889
Q ss_pred CCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHH
Q psy11689 237 APAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQT 278 (390)
Q Consensus 237 ~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~ 278 (390)
.|.++++||+. |........... ..+.+.+...|....
T Consensus 98 ~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 98 DPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNTA 135 (261)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSSH
T ss_pred CCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcchH
Confidence 99999999997 554443333332 345666777776543
No 151
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.35 E-value=4.4e-08 Score=98.74 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=67.2
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
.+++++|++||+++.+|++++| ||||+ .|.+|. +.++|.+|++. ..+.+++++ +.+|+.
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR--------------~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l-~~la~~ 216 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLR--------------PGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNL-EIIAKR 216 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHT
T ss_pred CCCEEEEEecCChhhhchhhcc--------------cCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhH-HHHHHh
Confidence 3579999999999988888887 99999 666666 36688888876 456788998 889999
Q ss_pred hcCCccccccccccccchhhh
Q psy11689 83 EEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~ 103 (390)
|.|++|+||..+|.+++....
T Consensus 217 t~G~sgadL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 217 TPGFVGADLENLVNEAALLAA 237 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999887644
No 152
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.33 E-value=2.2e-06 Score=87.83 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=75.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chhc--------ccc-----------------------
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVLA--------ASA----------------------- 211 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~~--------i~~----------------------- 211 (390)
.+.+++.+.|.||+|+|||||+++++..... .++. .+.
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~ 387 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLK 387 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHH
Confidence 3568999999999999999999999943210 0000 000
Q ss_pred ----ccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 212 ----AQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 212 ----~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
.......+. .+.+..+.++++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|....+..
T Consensus 388 ~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~ 467 (538)
T 1yqt_A 388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 467 (538)
T ss_dssp TTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 000000011 12344556888999999999999999999999988877766543 36788999998766654
Q ss_pred -cCc
Q psy11689 282 -ANK 284 (390)
Q Consensus 282 -t~~ 284 (390)
|++
T Consensus 468 ~~dr 471 (538)
T 1yqt_A 468 VSDR 471 (538)
T ss_dssp HCSE
T ss_pred hCCE
Confidence 444
No 153
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.33 E-value=2e-06 Score=89.24 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chhc--------cccc----------------------
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVLA--------ASAA---------------------- 212 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~~--------i~~~---------------------- 212 (390)
.+.+++.+.|.||+|+|||||+++++..... .++. .+..
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~ 457 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLK 457 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHH
Confidence 3568999999999999999999999953210 0000 0000
Q ss_pred -----cccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689 213 -----QLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT 281 (390)
Q Consensus 213 -----~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~ 281 (390)
.+....+. .+.+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|.+..+..
T Consensus 458 ~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 458 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 00000010 12234445778899999999999999999999988777666543 36788999998766654
No 154
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.32 E-value=2.1e-06 Score=76.61 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~ 211 (390)
+++++..++|+||||+|||+|+..+|...+.++++++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 57889999999999999999999999744445554443
No 155
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.31 E-value=3.1e-06 Score=86.75 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHh-cCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+..+..+++|...+|.+|++||+.+.+|........+.+. ..+.+.+.++|+...+.. |++
T Consensus 162 GekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dr 227 (538)
T 1yqt_A 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDI 227 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 34556688899999999999999999999987776655443 347889999999876654 443
No 156
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.31 E-value=3e-06 Score=78.83 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=73.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh---c------cch--------h--cc-ccccc-----------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---V------YRV--------L--AA-SAAQL----------------- 214 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~------~~~--------~--~i-~~~~~----------------- 214 (390)
++.+. +..+.|.||+|+|||||+++++... | .++ + ++ ..+.+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~ 103 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL 103 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCC
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcch
Confidence 56688 9999999999999999999998542 1 000 0 00 00000
Q ss_pred ------------------cCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEecc
Q psy11689 215 ------------------YSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGY 274 (390)
Q Consensus 215 ------------------~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~ 274 (390)
...... ...+..+..+++|...+|.++++||+.+.+|........+.+....-+.+..+|
T Consensus 104 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtH 183 (263)
T 2pjz_A 104 DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTH 183 (263)
T ss_dssp CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEES
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEc
Confidence 000000 122444557788899999999999999999999988887777654338888999
Q ss_pred CHHHHH
Q psy11689 275 REQTAD 280 (390)
Q Consensus 275 ~~~~i~ 280 (390)
.+..+.
T Consensus 184 d~~~~~ 189 (263)
T 2pjz_A 184 ELDMLN 189 (263)
T ss_dssp CGGGGG
T ss_pred CHHHHH
Confidence 876544
No 157
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.2e-06 Score=87.74 Aligned_cols=62 Identities=16% Similarity=-0.017 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~ 284 (390)
.+..+.++++|...+|.|+++||+.+.+|........+.+.. .+.+.+.++|.+..+.. +++
T Consensus 471 GqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDr 537 (608)
T 3j16_B 471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK 537 (608)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 355567889999999999999999999999887776655533 37889999999876654 444
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.28 E-value=1.1e-06 Score=78.94 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=60.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccc------------------cc-------Cc--------
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQ------------------LY-------SP-------- 217 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~------------------~~-------~~-------- 217 (390)
++.++..++|+||||+|||||++.++... +..++.++... .. ..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 56788999999999999999999998432 11221111100 00 00
Q ss_pred c---hhhHHHHHHHHHHHHHhcCCe--EEEEcCCCCCC--ChhhHHHHHHHh----hcCCCcEEEeccCH
Q psy11689 218 Y---VGEAEQNVTQLFHRARLAAPA--ILFIDEIERTY--NCEYREQTADNA----KKPRIPRTNGGYRE 276 (390)
Q Consensus 218 ~---~g~~~~~i~~~f~~A~~~~p~--il~lDEid~~l--~~r~~~~~~~~~----~~~~~~~i~~~~~~ 276 (390)
+ .....+....+...+...+|. +|++||+..++ +..........+ ...+.+.+..+|..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0 001223334455555667899 99999999887 554433333332 23466777777754
No 159
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.27 E-value=3.9e-06 Score=85.89 Aligned_cols=58 Identities=10% Similarity=-0.032 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHh
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADT 281 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~ 281 (390)
+..+..+++|....|.|+++||+.+.+|........+.+.. .+.+.+.++|++..+..
T Consensus 143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 44556788999999999999999999999877666554432 27889999999877654
No 160
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.27 E-value=7.8e-07 Score=86.46 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhcc----chhcccc-ccccC---------cchhhHHHHHHHHHHHHHhcCCeEE
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVY----RVLAASA-AQLYS---------PYVGEAEQNVTQLFHRARLAAPAIL 241 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~----~~~~i~~-~~~~~---------~~~g~~~~~i~~~f~~A~~~~p~il 241 (390)
.++..+++.||+|||||||+++++..... .++.+.- .++.. ...+.....+...+++|....|++|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 46678999999999999999999876532 2221111 11100 0011111345568899999999999
Q ss_pred EEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689 242 FIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 242 ~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~ 284 (390)
++||+. +.......... ...+.+.+...|....+..+++
T Consensus 201 llDEp~---d~e~~~~~~~~-~~~G~~vl~t~H~~~~~~~~dR 239 (356)
T 3jvv_A 201 LVGEMR---DLETIRLALTA-AETGHLVFGTLHTTSAAKTIDR 239 (356)
T ss_dssp EESCCC---SHHHHHHHHHH-HHTTCEEEEEESCSSHHHHHHH
T ss_pred ecCCCC---CHHHHHHHHHH-HhcCCEEEEEEccChHHHHHHH
Confidence 999997 34333322222 3346677888887665555443
No 161
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.25 E-value=6e-06 Score=85.67 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh-cCc
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT-ANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~-t~~ 284 (390)
+..+..+++|....|.++++||+.+.+|..........+ ...+.+.+.++|++..+.. +++
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~dr 290 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 344457778999999999999999999998876665544 3346788999999877654 443
No 162
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.23 E-value=5.9e-07 Score=86.43 Aligned_cols=108 Identities=9% Similarity=0.087 Sum_probs=69.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhcccccccc-----Cc---chhhHHHHHHHHHHHHHhcCCeEEE
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASAAQLY-----SP---YVGEAEQNVTQLFHRARLAAPAILF 242 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~~~~~-----~~---~~g~~~~~i~~~f~~A~~~~p~il~ 242 (390)
+.+.++..++|.||+|+|||||+++++..... ..+.+...... .. +.....+..+..+++|....|.+++
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEE
Confidence 34557889999999999999999999976532 12222221110 01 1111234567788899999999999
Q ss_pred EcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689 243 IDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 243 lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~ 284 (390)
+||+.+ ... ......+.....+.+...|.......+++
T Consensus 246 ldE~~~---~e~-~~~l~~~~~g~~tvi~t~H~~~~~~~~dr 283 (330)
T 2pt7_A 246 LGELRS---SEA-YDFYNVLCSGHKGTLTTLHAGSSEEAFIR 283 (330)
T ss_dssp ECCCCS---THH-HHHHHHHHTTCCCEEEEEECSSHHHHHHH
T ss_pred EcCCCh---HHH-HHHHHHHhcCCCEEEEEEcccHHHHHhhh
Confidence 999997 222 22334444444567888888765555544
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.21 E-value=1.7e-06 Score=77.73 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
++.++..+.|.||||+|||||++.++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6788999999999999999999999873
No 164
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.20 E-value=6.2e-06 Score=85.59 Aligned_cols=59 Identities=14% Similarity=-0.000 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689 223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT 281 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~ 281 (390)
.+..+..+++|...+|.++++||+.+.+|........+.+.. .+.+.+.++|++..+..
T Consensus 232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 345566888999999999999999999999887766555433 37889999999876654
No 165
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.19 E-value=4.3e-06 Score=90.54 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=76.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHh-h-ccc------hhccc--c---------ccc------------------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-S-VYR------VLAAS--A---------AQL------------------ 214 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-~-~~~------~~~i~--~---------~~~------------------ 214 (390)
++.+.+|..+.|.||+|+|||||+++|+.- . +.+ ..++. . .+.
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~ 534 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE 534 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH
Confidence 556778999999999999999999999841 0 110 00000 0 000
Q ss_pred -------cCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689 215 -------YSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT 281 (390)
Q Consensus 215 -------~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 281 (390)
.....+ .+.+..+..+++|...+|.++++||+.+.+|........+.+...+.+.+.++|+...+..
T Consensus 535 lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 535 FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDN 610 (986)
T ss_dssp TTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHH
T ss_pred cCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 000000 1224455678889999999999999999999998888877776667889999999876653
No 166
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.18 E-value=4.4e-07 Score=86.45 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=43.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc----cchhccccccccCcchhh-HHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV----YRVLAASAAQLYSPYVGE-AEQNVTQLFHRARLAAPAILFIDEIERT 249 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~----~~~~~i~~~~~~~~~~g~-~~~~i~~~f~~A~~~~p~il~lDEid~~ 249 (390)
.+.+++|+||||||||+|+.++|.++. .+++.+..++++...... ........+.. ...+.+|||||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA--VKNVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH--HHTSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCC
Confidence 368899999999999999999997654 555556655443221110 00011112222 234579999999654
No 167
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.16 E-value=1.8e-07 Score=94.89 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=65.4
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
..++++++||+++.+|++++| ||||+ .|.+|. +..+|++||+. ..+.+++++ +.+|+.|
T Consensus 168 ~~viviAatn~p~~LD~aLlr--------------~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l-~~lA~~t 232 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLR--------------PGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL-ALLAKRT 232 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSS--------------TTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTT-HHHHTTS
T ss_pred ccEEEEEecCChhhcCccccc--------------ccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHH-HHHHHhc
Confidence 468999999999887777776 99999 666666 46788898876 447788999 8899999
Q ss_pred cCCccccccccccccchhhh
Q psy11689 84 EGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~~ 103 (390)
.|++|+||..++.+++..+.
T Consensus 233 ~G~~gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 233 PGFVGADLENLLNEAALLAA 252 (499)
T ss_dssp CSCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998877643
No 168
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.13 E-value=1.1e-07 Score=73.25 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=44.3
Q ss_pred CCCCCccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689 53 LPTAPQGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 53 ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
-|++.++|++||++ ++++++||+ +.||+.|+||||+||..+|.+|++....
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~~dvdl-~~LA~~T~G~SGADL~~l~~eAa~~alr 63 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALR 63 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEECTTCCC-HHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCCCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45559999999988 557789999 9999999999999999999999987543
No 169
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.12 E-value=5.6e-06 Score=87.05 Aligned_cols=60 Identities=8% Similarity=-0.053 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCC---eEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcC
Q psy11689 224 QNVTQLFHRARLAAP---AILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p---~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~ 283 (390)
+..+..+++|...+| .+|++||+.+.+|......+.+.+. ..+.+.+.++|.+..+..++
T Consensus 548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d 613 (670)
T 3ux8_A 548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTAD 613 (670)
T ss_dssp HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCS
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCC
Confidence 555678888887765 6999999999999988877665543 34789999999976554443
No 170
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.12 E-value=8e-06 Score=85.87 Aligned_cols=61 Identities=10% Similarity=-0.075 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCCe--EEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcCc
Q psy11689 224 QNVTQLFHRARLAAPA--ILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~--il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~~ 284 (390)
+..+..+++|...+|. ++++||+.+.+|........+.+. ..+.+.+.++|.+..+..+++
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ 272 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADY 272 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSE
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence 4556688888888888 999999999999988877765443 347899999999887665554
No 171
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.10 E-value=3.9e-07 Score=87.37 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=63.2
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccC-CcccchHHHHHH
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKL-NEEVELSENVQR 81 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~-~~~v~l~~~la~ 81 (390)
.++++++++||+++.+|++++| ||+ .+.+|. +.++|.+|+.. ... -+++++ +.||+
T Consensus 147 ~~~v~vI~atn~~~~ld~al~r----------------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l-~~la~ 209 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRR----------------RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADF-RELGR 209 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHH----------------TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHH-HHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHh----------------hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHH
Confidence 3679999999999999999887 787 566666 47788888876 222 256788 88999
Q ss_pred hhcCCccccccccccccchhhh
Q psy11689 82 EEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 82 ~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
.|.||+|+||..+|.++.+...
T Consensus 210 ~t~G~sgadl~~l~~~A~~~a~ 231 (322)
T 1xwi_A 210 KTDGYSGADISIIVRDALMQPV 231 (322)
T ss_dssp TCTTCCHHHHHHHHHHHHTHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 172
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.10 E-value=3.2e-07 Score=84.42 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=65.3
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
..++++++||+++.+|++++| +|||+ .|++|. +.++|.+|+.. ..+.+++++ ..+|+.|
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r--------------~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~-~~la~~~ 217 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLR--------------PGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL-ALLAKRT 217 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGS--------------TTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHTC
T ss_pred CCEEEEEccCCchhCCHHHcC--------------CCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCH-HHHHHHc
Confidence 347899999999998888888 99999 777776 46778888875 446778888 8899999
Q ss_pred cCCccccccccccccchhhh
Q psy11689 84 EGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~~ 103 (390)
.|++|+||..++.++...+.
T Consensus 218 ~G~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 218 PGFVGADLENLLNEAALLAA 237 (254)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999888877543
No 173
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.10 E-value=3.1e-06 Score=76.98 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=60.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHH--Hh--hccchhccccccc----------c----------------Ccch----
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLA--AH--SVYRVLAASAAQL----------Y----------------SPYV---- 219 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia--~~--~~~~~~~i~~~~~----------~----------------~~~~---- 219 (390)
+++++..++|.||+|+|||||+++++ .. .+...+.+..... + ..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 67899999999999999999999998 22 1111111111000 0 0000
Q ss_pred ------------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC-----hhhHHHH---HHHhhcCCCcEEEeccCHHHH
Q psy11689 220 ------------GEAEQNVTQLFHRARLAAPAILFIDEIERTYN-----CEYREQT---ADNAKKPRIPRTNGGYREQTA 279 (390)
Q Consensus 220 ------------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~-----~r~~~~~---~~~~~~~~~~~i~~~~~~~~i 279 (390)
....+....+.......+|.++++||+.+.++ ....... ...+...+.+.+..+|.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 00112233444455568999999999998875 2222222 233344578888888875443
No 174
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=5.9e-06 Score=78.55 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=53.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhc------cchhccccccccCcchhhHHHHHHHHHHHHHhcC----CeEEEEcCCC
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSV------YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAA----PAILFIDEIE 247 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~------~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~----p~il~lDEid 247 (390)
...+||+||||+|||++++++|..++ ..++.++... ...+...++.++..+...+ ..|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 45899999999999999999998642 2233333221 0123345677777775432 4799999999
Q ss_pred CCCChhhHHHHHHHhhcC
Q psy11689 248 RTYNCEYREQTADNAKKP 265 (390)
Q Consensus 248 ~~l~~r~~~~~~~~~~~~ 265 (390)
.+-. ...+.....+..+
T Consensus 93 ~lt~-~a~naLLk~LEep 109 (305)
T 2gno_A 93 RMTQ-QAANAFLKALEEP 109 (305)
T ss_dssp GBCH-HHHHHTHHHHHSC
T ss_pred HhCH-HHHHHHHHHHhCC
Confidence 9743 3344455555554
No 175
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.07 E-value=4.1e-07 Score=83.90 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=65.2
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE 82 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~ 82 (390)
.++++++++||+++.+|++++| +|||+ .+.+|. +.++|.+++.. ..+.+++++ ..+|..
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r--------------~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~-~~la~~ 212 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLR--------------PGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA-AIIARG 212 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHT
T ss_pred CCCEEEEEeeCCchhCCHHHcC--------------CCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccH-HHHHHH
Confidence 3578999999999988888887 99999 666655 36788888765 446678888 889999
Q ss_pred hcCCccccccccccccchhhh
Q psy11689 83 EEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~ 103 (390)
|.||+++||..++.++...+.
T Consensus 213 ~~G~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 213 TPGFSGADLANLVNEAALFAA 233 (257)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999888877543
No 176
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.07 E-value=3.8e-06 Score=96.53 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccccc----------------CcchhhHHHHHHHHHHHHH
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLY----------------SPYVGEAEQNVTQLFHRAR 234 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~----------------~~~~g~~~~~i~~~f~~A~ 234 (390)
+++++++++|+||||||||+||.+++.++ |..+.+++..+.+ -......++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 48899999999999999999999998664 3334444433221 1112245577778888889
Q ss_pred hcCCeEEEEcCCCCCCChh
Q psy11689 235 LAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 235 ~~~p~il~lDEid~~l~~r 253 (390)
..+|++||||+++.+++..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHH
T ss_pred cCCCCEEEEcChhHhcccc
Confidence 9999999999999888753
No 177
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.05 E-value=6.6e-06 Score=74.51 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=50.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh--h-------ccchhccccccccC--------------------------c
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH--S-------VYRVLAASAAQLYS--------------------------P 217 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~--~-------~~~~~~i~~~~~~~--------------------------~ 217 (390)
-+++++..++|+||||+|||+|+..++.. . +...++++....+. .
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 36778999999999999999999999984 2 22344444322100 0
Q ss_pred c-hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689 218 Y-VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 218 ~-~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r 253 (390)
+ ..+....+..+...+....|.+|+|||+..+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 0 00111122334444556789999999999998764
No 178
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.03 E-value=1.3e-05 Score=76.93 Aligned_cols=88 Identities=9% Similarity=0.171 Sum_probs=53.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc-------------c---ccccccCcc-----hhhHHHHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA-------------A---SAAQLYSPY-----VGEAEQNVTQLFHRARL 235 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~-------------i---~~~~~~~~~-----~g~~~~~i~~~f~~A~~ 235 (390)
.+..+||+||||+|||++++++|..+...... + ..+++..-. ...+...++.++..+..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 45679999999999999999999886532210 0 001111000 11123456667666543
Q ss_pred ----cCCeEEEEcCCCCCCChhhHHHHHHHhhcC
Q psy11689 236 ----AAPAILFIDEIERTYNCEYREQTADNAKKP 265 (390)
Q Consensus 236 ----~~p~il~lDEid~~l~~r~~~~~~~~~~~~ 265 (390)
..+.|++|||+|.+-. ...+.....+...
T Consensus 103 ~~~~~~~kvviIdead~l~~-~a~naLLk~lEep 135 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTD-AAANALLKTLEEP 135 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCH-HHHHHHHHHHTSC
T ss_pred ccccCCcEEEEECchhhcCH-HHHHHHHHHhcCC
Confidence 3468999999998743 3344455555554
No 179
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.01 E-value=1.5e-06 Score=77.55 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=27.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
++...+++++||||||||+++.++|+.....++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 455678999999999999999999998764443
No 180
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.98 E-value=9.5e-07 Score=82.54 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=65.6
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
..++++++||+++.+|++++| ++||+ .|++|. +.++|.+|+.. ..+.+++++ ..+|..|
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r--------------~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~-~~la~~~ 241 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLR--------------PGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL-ALLAKRT 241 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHS--------------TTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHTC
T ss_pred CCEEEEEecCCchhCCHhHcC--------------CCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCH-HHHHHHc
Confidence 347899999999999999999 99999 777776 46788888875 446678888 8899999
Q ss_pred cCCccccccccccccchhh
Q psy11689 84 EGIAGENLQRGGGEEGIEL 102 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~ 102 (390)
.|++|+||..++.++....
T Consensus 242 ~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 242 PGFVGADLENLLNEAALLA 260 (278)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999988877654
No 181
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.97 E-value=1.3e-05 Score=77.66 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=28.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
..+++++..+.|+||||+|||+|++.++...
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999999999765
No 182
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.97 E-value=9.6e-06 Score=79.95 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCC--eEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcC
Q psy11689 223 EQNVTQLFHRARLAAP--AILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTAN 283 (390)
Q Consensus 223 ~~~i~~~f~~A~~~~p--~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~ 283 (390)
.+..+-.++.+....| .+|+|||+++.+|........+.+... +.+.+.++|.+.++..++
T Consensus 299 Ge~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d 363 (415)
T 4aby_A 299 GELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAH 363 (415)
T ss_dssp HHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcC
Confidence 3445566777888889 999999999999999888887776554 578889999876554444
No 183
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.97 E-value=3.4e-07 Score=68.88 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=44.3
Q ss_pred eCCCCCccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689 52 DLPTAPQGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 52 ~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
++|+ .++|++||++ +++++++|+ +.||+.|+||||+||..+|.++++....
T Consensus 1 plPd-~~~R~~Il~~~l~~~~~~~~~dl-~~la~~t~G~SGADi~~l~~eA~~~a~~ 55 (78)
T 3kw6_A 1 PPPN-EEARLDILKIHSRKMNLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALR 55 (78)
T ss_dssp CCCC-HHHHHHHHHHHHTTSEECTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCC-HHHHHHHHHHHhcCCCCCCccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3676 8899999987 456789999 9999999999999999999999987543
No 184
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.93 E-value=7.2e-06 Score=80.14 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=60.8
Q ss_pred HhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc----chhccccc-cc-cC---cchhh-----HHHHHHHHHHHHH
Q psy11689 169 EFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY----RVLAASAA-QL-YS---PYVGE-----AEQNVTQLFHRAR 234 (390)
Q Consensus 169 ~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~----~~~~i~~~-~~-~~---~~~g~-----~~~~i~~~f~~A~ 234 (390)
.+.++.+.++..++|.||+|+||||++++++..... .++.+..+ +. .. .++.+ ....+...+..+.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 344445678889999999999999999999976532 12111111 00 00 01111 1123456778888
Q ss_pred hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCH
Q psy11689 235 LAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYRE 276 (390)
Q Consensus 235 ~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~ 276 (390)
...|++|++||+. +...-....... ..+.+.+...|..
T Consensus 207 ~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 207 REDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTN 244 (372)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCC
T ss_pred hhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcc
Confidence 8899999999997 333322222332 3344455555543
No 185
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.93 E-value=6.5e-07 Score=69.08 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689 56 APQGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 56 ~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
+.++|++||++ +++++++|+ +.||+.|+||||+||..+|.+|++....
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl-~~lA~~t~G~SGADl~~l~~eAa~~a~r 53 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRW-ELISRLCPNSTGAELRSVCTEAGMFAIR 53 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCH-HHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCH-HHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 46889999988 667889999 9999999999999999999999987543
No 186
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.89 E-value=1.9e-05 Score=85.50 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689 224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD 280 (390)
Q Consensus 224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~ 280 (390)
+..+..+++|...+|.+|++||+.+.+|..........+.....+.+.++|....+.
T Consensus 906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~ 962 (986)
T 2iw3_A 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTK 962 (986)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHH
Confidence 444567889999999999999999999999888888888777778889999865543
No 187
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.88 E-value=1.3e-06 Score=82.50 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=58.3
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCCCCccCccccccccCCcccchHHHHHHhhcCCc
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPTAPQGRETELPFTKLNEEVELSENVQREEEGIA 87 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~~~~~r~~~l~~~~~~~~v~l~~~la~~t~G~~ 87 (390)
.+++++|++||+++.+|++++| ||||+ .|.+|+ .++|.+|+..+....++++ +.+++.+.||+
T Consensus 153 ~~~v~vI~ttN~~~~ld~al~R--------------~~R~d~~i~~P~-~~~r~~Il~~~~~~~~~~~-~~l~~~~~~~~ 216 (293)
T 3t15_A 153 NARVPIIVTGNDFSTLYAPLIR--------------DGRMEKFYWAPT-REDRIGVCTGIFRTDNVPA-EDVVKIVDNFP 216 (293)
T ss_dssp CCCCCEEEECSSCCC--CHHHH--------------HHHEEEEEECCC-HHHHHHHHHHHHGGGCCCH-HHHHHHHHHSC
T ss_pred CCCcEEEEecCCcccCCHHHhC--------------CCCCceeEeCcC-HHHHHHHHHHhccCCCCCH-HHHHHHhCCCC
Confidence 4589999999999999999999 99999 788995 8999999986444567888 88999999999
Q ss_pred cccccc
Q psy11689 88 GENLQR 93 (390)
Q Consensus 88 g~~l~~ 93 (390)
|++|..
T Consensus 217 ~~~l~~ 222 (293)
T 3t15_A 217 GQSIDF 222 (293)
T ss_dssp SCCHHH
T ss_pred cccHHH
Confidence 999853
No 188
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.87 E-value=9.3e-07 Score=81.83 Aligned_cols=77 Identities=25% Similarity=0.310 Sum_probs=62.4
Q ss_pred eeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhhc
Q psy11689 11 TVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREEE 84 (390)
Q Consensus 11 ~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t~ 84 (390)
+++++++||+++.+|++++| +|||+ .+.+|. +.++|.+++.. ..+.+++++ +.+++.+.
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r--------------~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~-~~la~~~~ 215 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMR--------------PGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL-QEVAKLTA 215 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGS--------------SSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT-TTTTSSSC
T ss_pred CEEEEEecCCchhcCHhHcC--------------CCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH-HHHHHHcC
Confidence 48999999999888877777 99998 666666 47788888875 345577888 88999999
Q ss_pred CCccccccccccccchhh
Q psy11689 85 GIAGENLQRGGGEEGIEL 102 (390)
Q Consensus 85 G~~g~~l~~~~~ea~~~~ 102 (390)
|++|++|..++.++...+
T Consensus 216 g~~g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 216 GLAGADLANIINEAALLA 233 (268)
T ss_dssp SSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999888777643
No 189
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.87 E-value=1.4e-05 Score=78.05 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=47.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~ 251 (390)
+++++++..++|+||||+|||||+++++...+..++.+..+.. . . -|......+..++++||++....
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~--------~--~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R--------L--NFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T--------H--HHHHGGGTTCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h--------H--HHHHHHhcchhHHHHHHHHHHHH
Confidence 3578899999999999999999999999887665544332210 0 0 11122334557789999998875
No 190
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.87 E-value=2.2e-05 Score=77.33 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=50.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh---------ccchhccccccccCc--------------------------
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------VYRVLAASAAQLYSP-------------------------- 217 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---------~~~~~~i~~~~~~~~-------------------------- 217 (390)
-++.++..++|+||||||||+|+..++... +...++++....+..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 478899999999999999999999776322 122344433221100
Q ss_pred chh-hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689 218 YVG-EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY 254 (390)
Q Consensus 218 ~~g-~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~ 254 (390)
+.. .....+..+...+....|.+|++|++..+++...
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 000 1112233344445567899999999999987543
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.87 E-value=2.1e-06 Score=80.10 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=67.1
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t 83 (390)
.+++++++||+++.+|+++++ ++||+ .+.+|. +.++|.+++.. ..+..++++ +.+++.+
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~--------------~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~-~~l~~~~ 219 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILR--------------PGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL-EEIAKMT 219 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHS--------------TTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHHC
T ss_pred CCEEEEEeCCCchhcCHHHcC--------------CCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH-HHHHHHc
Confidence 478999999999999999998 99998 777777 57788888876 345677888 8899999
Q ss_pred cCCccccccccccccchhhh
Q psy11689 84 EGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 84 ~G~~g~~l~~~~~ea~~~~~ 103 (390)
.|+++.++..+|.++...+.
T Consensus 220 ~g~~~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 220 EGCVGAELKAICTEAGMNAI 239 (285)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999888877643
No 192
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.85 E-value=2e-06 Score=82.18 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=63.1
Q ss_pred hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----cc-CCcccchHHHHH
Q psy11689 8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TK-LNEEVELSENVQ 80 (390)
Q Consensus 8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~-~~~~v~l~~~la 80 (390)
-..+++++++||+++.+|++|++ ||+ .|.+|. +.++|++|+.. .. .-++.++ +.||
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~----------------Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l-~~la 213 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRR----------------RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDY-RTLG 213 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHH----------------HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHH-HHHH
T ss_pred cCCceEEEEecCChhhCCHHHHc----------------ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHH-HHHH
Confidence 34679999999999999999887 787 555555 47788888876 12 2256778 8899
Q ss_pred HhhcCCccccccccccccchhhh
Q psy11689 81 REEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 81 ~~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
+.|.||+|++|..+|.++.+...
T Consensus 214 ~~t~g~sg~di~~l~~~a~~~a~ 236 (322)
T 3eie_A 214 AMTEGYSGSDIAVVVKDALMQPI 236 (322)
T ss_dssp HTTTTCCHHHHHHHHHHHTTHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998887643
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.83 E-value=2.5e-06 Score=82.85 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=62.2
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccC-CcccchHHHHHH
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKL-NEEVELSENVQR 81 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~-~~~v~l~~~la~ 81 (390)
..+++++++||+++.+|++++| ||+ .+.+|. +.++|.+|+.. ... -+++++ +.||+
T Consensus 185 ~~~v~vI~atn~~~~ld~al~r----------------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l-~~la~ 247 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRR----------------RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY-RTLGA 247 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHH----------------TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH-HHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHc----------------ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH-HHHHH
Confidence 3579999999999999999887 786 555655 37788888876 211 256788 88999
Q ss_pred hhcCCccccccccccccchhhh
Q psy11689 82 EEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 82 ~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
.|.||+|++|..+|.++.+.+.
T Consensus 248 ~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 248 MTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 194
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.81 E-value=3.6e-05 Score=83.16 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=60.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh-----hccchh--------------ccccccccCcchhh--HH-HHHHHHH
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH-----SVYRVL--------------AASAAQLYSPYVGE--AE-QNVTQLF 230 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~-----~~~~~~--------------~i~~~~~~~~~~g~--~~-~~i~~~f 230 (390)
+.+..++.++|.||+|+||||+++.++.- .|..+. .+...+........ .+ +.+..+.
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il 747 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEII 747 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHH
Confidence 34566788999999999999999998732 221110 00101111000000 11 1111222
Q ss_pred HHHHhcCCeEEEEcCCCCCCChhhHHHHH----HHhh-cCCCcEEEeccCHHH
Q psy11689 231 HRARLAAPAILFIDEIERTYNCEYREQTA----DNAK-KPRIPRTNGGYREQT 278 (390)
Q Consensus 231 ~~A~~~~p~il~lDEid~~l~~r~~~~~~----~~~~-~~~~~~i~~~~~~~~ 278 (390)
. ....|++|+|||+.+.+++....... ..+. ..+.+.+..+|....
T Consensus 748 ~--~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 748 R--KATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp H--HCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred H--hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 2 26789999999999999987665543 3332 357888899997644
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.79 E-value=3.4e-05 Score=74.71 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=51.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCc----------------chhhHHHHHHHHHHHHH
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSP----------------YVGEAEQNVTQLFHRAR 234 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~----------------~~g~~~~~i~~~f~~A~ 234 (390)
+++++..++|+||||+|||+|+..++... +..+++++....... .....++.+..+.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 57789999999999999999999998764 344545554332110 01122233333333334
Q ss_pred hcCCeEEEEcCCCCCCC
Q psy11689 235 LAAPAILFIDEIERTYN 251 (390)
Q Consensus 235 ~~~p~il~lDEid~~l~ 251 (390)
...|+++++|.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 57899999999999886
No 196
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=9.8e-06 Score=71.67 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=30.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
++.+.++..++|.|||||||||+++.+|..++++++..+
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 344567889999999999999999999999988776543
No 197
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.79 E-value=0.00017 Score=85.50 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=56.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHH-HhcCCeEEEEcCCCC
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA-RLAAPAILFIDEIER 248 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A-~~~~p~il~lDEid~ 248 (390)
..+++++||+|.+||||++|++..|.-+++.++.+......+ ..+-...++.++..| ...+|.+.+++|-.-
T Consensus 1606 ~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi 1678 (2695)
T 4akg_A 1606 KQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESNI 1678 (2695)
T ss_dssp HSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTTC
T ss_pred cCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEecccc
Confidence 357889999999999999999999999999998887644322 233446788899888 456678888888753
No 198
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=1.9e-05 Score=69.60 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+..+.|.||+|+|||||++.++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3568999999999999999999765
No 199
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.77 E-value=2.5e-05 Score=75.56 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=51.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcc----------------hhhHHHHHHHHHHHH
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPY----------------VGEAEQNVTQLFHRA 233 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~----------------~g~~~~~i~~~f~~A 233 (390)
-+++++..++|+||||+|||+|+..++... +..+++++........ ....++.+..+...+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 357789999999999999999999998553 3344444433211110 011233333333344
Q ss_pred HhcCCeEEEEcCCCCCCC
Q psy11689 234 RLAAPAILFIDEIERTYN 251 (390)
Q Consensus 234 ~~~~p~il~lDEid~~l~ 251 (390)
....|++||||++..++.
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 456799999999999984
No 200
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.76 E-value=8e-05 Score=69.91 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
+++.++..++|.||||+|||||++.+|..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999844
No 201
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.76 E-value=3.1e-05 Score=66.73 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
+..++|+|+|||||||+++.++..++.+++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 4579999999999999999999998776654
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.75 E-value=2.8e-06 Score=84.98 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=62.1
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccC-CcccchHHHHHH
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKL-NEEVELSENVQR 81 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~-~~~v~l~~~la~ 81 (390)
..+|+++++||+++.+|++|+| ||+ .+.+|. +.++|.+|+.. ... -+++++ +.||+
T Consensus 269 ~~~v~vI~atn~~~~ld~al~r----------------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l-~~la~ 331 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRR----------------RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADF-QELGR 331 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHT----------------TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHH-HHHHH
T ss_pred CCCEEEEecCCCccccCHHHHh----------------hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHH
Confidence 3679999999999999988876 787 666666 36788888876 111 256788 88999
Q ss_pred hhcCCccccccccccccchhhh
Q psy11689 82 EEEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 82 ~t~G~~g~~l~~~~~ea~~~~~ 103 (390)
.|.||+|++|..+|.++.+...
T Consensus 332 ~t~G~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 332 KTDGYSGADISIIVRDALMQPV 353 (444)
T ss_dssp HTTTCCHHHHHHHHHHHHTHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887633
No 203
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.74 E-value=7.3e-05 Score=80.98 Aligned_cols=103 Identities=14% Similarity=0.013 Sum_probs=59.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH-----hhccchh--------------ccccccccCcch--hhHH-HHHHHHHHH
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAA-----HSVYRVL--------------AASAAQLYSPYV--GEAE-QNVTQLFHR 232 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~-----~~~~~~~--------------~i~~~~~~~~~~--g~~~-~~i~~~f~~ 232 (390)
+..++.++|.||+|+||||+++.++. +.|..+. .+...+...... +..+ ..+..++.
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~- 737 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILR- 737 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHH-
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHH-
Confidence 44567899999999999999999952 2231110 011111000000 1111 11222222
Q ss_pred HHhcCCeEEEEcCCCCCCChhhHHHH----HHHhhc-CCCcEEEeccCHHHH
Q psy11689 233 ARLAAPAILFIDEIERTYNCEYREQT----ADNAKK-PRIPRTNGGYREQTA 279 (390)
Q Consensus 233 A~~~~p~il~lDEid~~l~~r~~~~~----~~~~~~-~~~~~i~~~~~~~~i 279 (390)
....|++|+|||+.+.+++...... ...+.. .+.+.+..+|.....
T Consensus 738 -~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 738 -SATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT 788 (934)
T ss_dssp -HCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred -hccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence 2678999999999999998765444 334443 477888888875443
No 204
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.70 E-value=0.0001 Score=79.59 Aligned_cols=61 Identities=7% Similarity=-0.067 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcC---CeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcCc
Q psy11689 224 QNVTQLFHRARLAA---PAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTANK 284 (390)
Q Consensus 224 ~~i~~~f~~A~~~~---p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~~ 284 (390)
+..+..+++|...+ |.++++||+.+.++........+.+. ..+.+.+.++|++..+..+++
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADr 876 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADH 876 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence 44455677777655 57999999999999988877766554 347899999999877766554
No 205
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.69 E-value=8.6e-05 Score=70.57 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=35.4
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+.|-+...+.+.+.+.. +..++|+||+|+|||+|++.++++.+
T Consensus 13 ~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred hcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence 577777777777776532 26899999999999999999998765
No 206
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.68 E-value=9.1e-05 Score=70.49 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=36.6
Q ss_pred CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~ 211 (390)
.+.|-+...+.+.+ +. . ..++|+||+|+|||+|++.++++.+..++++++
T Consensus 14 ~~~gR~~el~~L~~-l~---------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LR---------------A-PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp GSCCCHHHHHHHHH-TC---------------S-SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred HhcChHHHHHHHHH-hc---------------C-CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 56676666666655 32 1 479999999999999999999887654444444
No 207
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.68 E-value=3.5e-06 Score=77.34 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=59.7
Q ss_pred hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCc--ccchHHHHH
Q psy11689 9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNE--EVELSENVQ 80 (390)
Q Consensus 9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~--~v~l~~~la 80 (390)
.++++++++||+++.+|+++++ +|||+ .+.+|. +.++|.+++.. ..+.. ++.+ +.++
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~--------------~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~-~~l~ 207 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMR--------------PGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYS-QRLA 207 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGS--------------TTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHH-HHHH
T ss_pred CCCEEEEecCCChhhcCHHHhc--------------CCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHH-HHHH
Confidence 3578999999998887777777 99998 666666 46778888765 22332 3334 7899
Q ss_pred HhhcCCccccccccccccchh
Q psy11689 81 REEEGIAGENLQRGGGEEGIE 101 (390)
Q Consensus 81 ~~t~G~~g~~l~~~~~ea~~~ 101 (390)
+.+.|+++++|..++.++...
T Consensus 208 ~~~~g~~~~~l~~l~~~a~~~ 228 (262)
T 2qz4_A 208 ELTPGFSGADIANICNEAALH 228 (262)
T ss_dssp HTCTTCCHHHHHHHHHHHHTC
T ss_pred HHCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998877664
No 208
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.68 E-value=2.3e-06 Score=65.05 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=41.5
Q ss_pred CCccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689 56 APQGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 56 ~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
+.++|++||++ +++++++|+ +.||+.|+||||+||..+|.+|++....
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl-~~la~~t~G~SGADi~~l~~eA~~~a~~ 53 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDL-EDYVARPDKISGADINSICQESGMLAVR 53 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCT-HHHHTSSCCCCHHHHHHHHHHHHHGGGT
T ss_pred CHHHHHHHHHHHhCCCCCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999987 556789999 9999999999999999999999987543
No 209
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.66 E-value=1.4e-05 Score=71.10 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=43.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh--------hc-cchhccccccccCcch----------hhHHH--HHHHHHHHH--H
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH--------SV-YRVLAASAAQLYSPYV----------GEAEQ--NVTQLFHRA--R 234 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~--------~~-~~~~~i~~~~~~~~~~----------g~~~~--~i~~~f~~A--~ 234 (390)
+...|++|+||||||+++...+.. .| .+++..+..++..... ..... .....+.-+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 457899999999999998886433 33 4443333333322111 10000 011222221 2
Q ss_pred hcCCeEEEEcCCCCCCChh
Q psy11689 235 LAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 235 ~~~p~il~lDEid~~l~~r 253 (390)
....+||+|||+..+++.+
T Consensus 85 ~~~~~vliIDEAq~l~~~~ 103 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPAR 103 (199)
T ss_dssp GGTTCEEEETTGGGTSBCC
T ss_pred ccCceEEEEEChhhhccCc
Confidence 2457899999999997544
No 210
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.63 E-value=0.00014 Score=65.74 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~ 200 (390)
.++.++..++|+||||+|||+|+..+|.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678899999999999999999888863
No 211
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.61 E-value=0.00029 Score=66.84 Aligned_cols=75 Identities=21% Similarity=0.173 Sum_probs=47.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhcccccccc--------------------CcchhhHHHHHHHHHH
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLY--------------------SPYVGEAEQNVTQLFH 231 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~--------------------~~~~g~~~~~i~~~f~ 231 (390)
..++..+++.||+|+||||++..+|.... ..+..+++.... ....+.........+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45678899999999999999999996542 222222211100 0011112222344667
Q ss_pred HHHhcCCeEEEEcCCCCC
Q psy11689 232 RARLAAPAILFIDEIERT 249 (390)
Q Consensus 232 ~A~~~~p~il~lDEid~~ 249 (390)
.+....|+++++|++...
T Consensus 181 ~a~~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRL 198 (306)
T ss_dssp HHHHTTCSEEEEEECCCC
T ss_pred HHHhcCCCEEEEECCCch
Confidence 778889999999999763
No 212
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.61 E-value=5.6e-05 Score=72.25 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=51.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh---------ccchhccccccccC---------cc---------------h
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------VYRVLAASAAQLYS---------PY---------------V 219 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---------~~~~~~i~~~~~~~---------~~---------------~ 219 (390)
-+++++..++|+||||+|||+|+..+|... +.++++++....+. .+ .
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 367889999999999999999999998764 33445554433110 00 0
Q ss_pred hhHH---HHHHHHHHHHHh-cCCeEEEEcCCCCCCC
Q psy11689 220 GEAE---QNVTQLFHRARL-AAPAILFIDEIERTYN 251 (390)
Q Consensus 220 g~~~---~~i~~~f~~A~~-~~p~il~lDEid~~l~ 251 (390)
...+ +.+..+...... ..+.+|+||.+..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 0011 123334444455 7899999999998763
No 213
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.61 E-value=4.4e-05 Score=68.37 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.++..+.|.||+|+|||||+++++..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46888999999999999999999975
No 214
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.60 E-value=7.6e-05 Score=72.63 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=50.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcc----------------hhhHHHHHHHHHHHHH
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPY----------------VGEAEQNVTQLFHRAR 234 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~----------------~g~~~~~i~~~f~~A~ 234 (390)
+++++..++|+||||+|||+|+..+|... +.++++++...-.... ....++.+..+.....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56788999999999999999999998654 3455555443221111 0112222222322334
Q ss_pred hcCCeEEEEcCCCCCCC
Q psy11689 235 LAAPAILFIDEIERTYN 251 (390)
Q Consensus 235 ~~~p~il~lDEid~~l~ 251 (390)
...+++||||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 56799999999999874
No 215
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.60 E-value=2.4e-05 Score=68.21 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=29.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~ 211 (390)
+.++..+.|.||||||||||+++++...+...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 5678899999999999999999999876554444443
No 216
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.59 E-value=3.3e-05 Score=67.36 Aligned_cols=36 Identities=36% Similarity=0.559 Sum_probs=30.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh-hccchhccc
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAH-SVYRVLAAS 210 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~-~~~~~~~i~ 210 (390)
...+..++|+|+|||||||+++.++.. .|++++..+
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345678999999999999999999998 788776543
No 217
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.59 E-value=3e-05 Score=67.31 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
+..++|+|||||||||+++.+|..++++++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 567999999999999999999999998876543
No 218
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.56 E-value=0.0001 Score=71.05 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=51.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh---------ccchhccccccccCc--------------------------
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------VYRVLAASAAQLYSP-------------------------- 217 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---------~~~~~~i~~~~~~~~-------------------------- 217 (390)
-+++++..++|+||||+|||+|+..+|... +..+++++....+..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 368889999999999999999999999763 334445544332110
Q ss_pred c-hhhHHHHHHHHHHHHHh--cCCeEEEEcCCCCCCCh
Q psy11689 218 Y-VGEAEQNVTQLFHRARL--AAPAILFIDEIERTYNC 252 (390)
Q Consensus 218 ~-~g~~~~~i~~~f~~A~~--~~p~il~lDEid~~l~~ 252 (390)
+ ..+..+.+..+...+.. ..+.+|+||.+..+...
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 0 00111122233344445 67899999999988743
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.55 E-value=0.0001 Score=71.42 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=50.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcc----h-----------hhHHHHHHHHHH-HHH
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPY----V-----------GEAEQNVTQLFH-RAR 234 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~----~-----------g~~~~~i~~~f~-~A~ 234 (390)
+++++..++|+||||+|||+|+..+|... +.++++++........ . ......+..++. .+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56788999999999999999999998653 3455555543211100 0 001122222332 234
Q ss_pred hcCCeEEEEcCCCCCCC
Q psy11689 235 LAAPAILFIDEIERTYN 251 (390)
Q Consensus 235 ~~~p~il~lDEid~~l~ 251 (390)
...+++||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 57899999999999985
No 220
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.55 E-value=3.9e-05 Score=66.84 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
..+..++|.|+|||||||+++.++..++++++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 456789999999999999999999988876654
No 221
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.54 E-value=0.00011 Score=68.31 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=25.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
++.++..++|+||||+|||||+..++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999999853
No 222
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.50 E-value=0.00013 Score=71.46 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=50.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcch-------------hhHHHHHHHHHHHHHhcCCeE
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYV-------------GEAEQNVTQLFHRARLAAPAI 240 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~-------------g~~~~~i~~~f~~A~~~~p~i 240 (390)
....++++|++||||+++|+++...+. .+|+.++|..+..... |.... ..-.|.. ....+
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~---a~~gt 234 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFEL---ADGGT 234 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHH---TTTSE
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceee---CCCcE
Confidence 345689999999999999999987654 6788888876432111 11000 0112333 23479
Q ss_pred EEEcCCCCCCChhhHHHHHHHh
Q psy11689 241 LFIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 241 l~lDEid~~l~~r~~~~~~~~~ 262 (390)
|||||++.+ +........+.+
T Consensus 235 lfldei~~l-~~~~q~~Ll~~l 255 (387)
T 1ny5_A 235 LFLDEIGEL-SLEAQAKLLRVI 255 (387)
T ss_dssp EEEESGGGC-CHHHHHHHHHHH
T ss_pred EEEcChhhC-CHHHHHHHHHHH
Confidence 999999986 333334444443
No 223
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.50 E-value=4.1e-06 Score=63.58 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=32.8
Q ss_pred ccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689 58 QGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE 104 (390)
Q Consensus 58 ~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~ 104 (390)
++|++||++ +++++++|+ +.||+.|+||||+||..+|.+|++....
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl-~~lA~~t~G~SGADi~~l~~eAa~~ai~ 50 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADL-DSLIIRNDSLSGAVIAAIMQEAGLRAVR 50 (82)
T ss_dssp -------------CEECTTCCS-TTTTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 478899987 456789999 8899999999999999999999987554
No 224
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.47 E-value=6e-05 Score=65.17 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
..+..++|+|+||+||||+++.++..++++++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3566799999999999999999999988777644
No 225
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.47 E-value=5.4e-05 Score=64.81 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=26.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
+..+.|.|||||||||+++.+|...+.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4679999999999999999999998876543
No 226
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.45 E-value=0.00016 Score=66.41 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccc
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQL 214 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~ 214 (390)
...+..++|.|+|||||||+++.++...+..++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3467889999999999999999999988754555555443
No 227
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.44 E-value=0.00022 Score=72.69 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=68.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccc--------------------------ccCcchh--h
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQ--------------------------LYSPYVG--E 221 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~--------------------------~~~~~~g--~ 221 (390)
.++.++..++|.||||+|||||++.++... |.+++++...+ +...... .
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 367899999999999999999999998543 22221111100 0000011 2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh-----hHHHH---HHHhhcCCCcEEEeccCH
Q psy11689 222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCE-----YREQT---ADNAKKPRIPRTNGGYRE 276 (390)
Q Consensus 222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r-----~~~~~---~~~~~~~~~~~i~~~~~~ 276 (390)
..+..+.+++.+...+|.+|++| +.+.++.. ..... ...+...+.+.+..+|..
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 44667788899999999999999 88877765 33333 233344578888888764
No 228
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.43 E-value=6.3e-05 Score=64.11 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
.++|.|||||||||+++.++..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999987765443
No 229
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.40 E-value=0.00032 Score=65.87 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~ 211 (390)
..+..++|.|||||||||+++.++.+.+..++.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 456789999999999999999999887433344444
No 230
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.39 E-value=6.9e-05 Score=64.97 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
..++|.|+|||||||+++.++..++++++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35999999999999999999999998876543
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.39 E-value=0.00043 Score=62.33 Aligned_cols=28 Identities=21% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.+++..+.|.||+|+|||||+++++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3578899999999999999999999765
No 232
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.38 E-value=0.00085 Score=65.12 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=37.4
Q ss_pred cCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHhcC
Q psy11689 236 AAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 236 ~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~t~ 283 (390)
..|.++++||+.+.+|+.........+.. .+.+.+.++|.+.....++
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 68999999999999999888777665543 4678899999876544443
No 233
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.38 E-value=0.00093 Score=73.18 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=62.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-----hhccchh----ccccc-cccCcchhh-----------HHHHHHHHHHHHHhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAA-----HSVYRVL----AASAA-QLYSPYVGE-----------AEQNVTQLFHRARLA 236 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~-----~~~~~~~----~i~~~-~~~~~~~g~-----------~~~~i~~~f~~A~~~ 236 (390)
+..++|+||+|+||||++++++- +.|..+. .+... .++.. .|. ...........+...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~r-ig~~d~~~~~~stf~~em~~~a~al~la~ 867 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTR-LGASDRIMSGESTFFVELSETASILMHAT 867 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEE-CC---------CHHHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHH-cCCHHHHhhchhhhHHHHHHHHHHHHhCC
Confidence 68899999999999999999952 2221000 00000 01100 010 001112344556678
Q ss_pred CCeEEEEcCCCCCCChhhHH----HHHHHhhcC-CCcEEEeccCHHHHHh
Q psy11689 237 APAILFIDEIERTYNCEYRE----QTADNAKKP-RIPRTNGGYREQTADT 281 (390)
Q Consensus 237 ~p~il~lDEid~~l~~r~~~----~~~~~~~~~-~~~~i~~~~~~~~i~~ 281 (390)
.|++|+|||+.+.++..... .....+... +.+.+..+|....+..
T Consensus 868 ~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 99999999999999976532 233444433 7788999998766554
No 234
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.38 E-value=6.9e-05 Score=64.52 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.++|.|||||||||+++.+|..++++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999998877643
No 235
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.37 E-value=0.0001 Score=63.36 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
++..++|.||||+||||+++.++...|..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 46789999999999999999999988765543
No 236
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.36 E-value=7.1e-05 Score=64.85 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.+..++|.|+|||||||+++.++...+++++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 456799999999999999999999888766543
No 237
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.35 E-value=0.00027 Score=65.23 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh---hccchhccccc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH---SVYRVLAASAA 212 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~---~~~~~~~i~~~ 212 (390)
.+..|+|.|+|||||||+++.++.. .|++++.++..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 3567999999999999999999987 56666533433
No 238
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.34 E-value=0.0001 Score=64.99 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.+..++|.|+|||||||+++.++..++++++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 456799999999999999999999988776544
No 239
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.34 E-value=9.3e-05 Score=63.20 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
....++|.|+|||||||+++.+|..++++++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 346799999999999999999999999887654
No 240
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.33 E-value=0.00011 Score=64.91 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
.++..+.|.|||||||||++++++...|..++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 46788999999999999999999998875544
No 241
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.33 E-value=0.00029 Score=81.30 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=56.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcch----------------hhHHHHHHHHHHHH
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYV----------------GEAEQNVTQLFHRA 233 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~----------------g~~~~~i~~~f~~A 233 (390)
.+++++..++++||||||||+|+.+++.+. |.++.+++..+...... ...+...+......
T Consensus 1076 ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~ 1155 (2050)
T 3cmu_A 1076 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1155 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHH
Confidence 468899999999999999999999997543 45555555544332211 11233444445555
Q ss_pred HhcCCeEEEEcCCCCCCChh
Q psy11689 234 RLAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 234 ~~~~p~il~lDEid~~l~~r 253 (390)
+...|++|++|++..+....
T Consensus 1156 ~~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1156 RSGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHH
T ss_pred HhCCCCEEEECCcccccccc
Confidence 67789999999999986644
No 242
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.32 E-value=0.0001 Score=64.30 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
++..++|.|+|||||||+++.++..++++++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 56789999999999999999999998877654
No 243
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=9.6e-05 Score=64.20 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
+..|+|.|+|||||||+++.++..++++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 5679999999999999999999988876653
No 244
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.32 E-value=0.0011 Score=63.53 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=37.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHH
Q psy11689 229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTA 279 (390)
Q Consensus 229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i 279 (390)
+++++....|.++++||+.+.+|........+.+.. .+.+.+.++|.....
T Consensus 264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~ 317 (339)
T 3qkt_A 264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELK 317 (339)
T ss_dssp HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGG
T ss_pred HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHH
Confidence 445566678999999999999999887766555433 345677788875443
No 245
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.31 E-value=0.00013 Score=67.68 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
++..+++|+||||||||+++.++|+..+
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3456899999999999999999998753
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.30 E-value=0.00013 Score=64.32 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
+..++|.|+||+||||+++.++...++.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999998866654
No 247
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.30 E-value=0.00025 Score=75.32 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=56.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh-----ccchh----cccc-ccccCc----------chhhHHHHHHHHHHHHH--h
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVL----AASA-AQLYSP----------YVGEAEQNVTQLFHRAR--L 235 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~----~i~~-~~~~~~----------~~g~~~~~i~~~f~~A~--~ 235 (390)
+..++|.||+|+||||++++++... |..+. .+.. .+++.. ..+...+.+ -+..+. .
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~--~la~il~~a 653 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEME--EVALILKEA 653 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHH--HHHHHHHHC
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHH--HHHHHHHhc
Confidence 6789999999999999999998532 21100 0000 011110 000011111 122333 6
Q ss_pred cCCeEEEEcCC---CCCCChhhH-HHHHHHhhcCCCcEEEeccCHHH
Q psy11689 236 AAPAILFIDEI---ERTYNCEYR-EQTADNAKKPRIPRTNGGYREQT 278 (390)
Q Consensus 236 ~~p~il~lDEi---d~~l~~r~~-~~~~~~~~~~~~~~i~~~~~~~~ 278 (390)
..|+++++||+ .+-+|.... ......+...+.+.+..+|....
T Consensus 654 ~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 654 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFEL 700 (765)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred cCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 79999999999 555555433 34445554456778888887544
No 248
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.30 E-value=0.00011 Score=63.79 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+..++|.|+|||||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 249
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.30 E-value=0.00011 Score=65.65 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
++..++|.|+|||||||+++.+|..++++++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 467899999999999999999999988766543
No 250
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.28 E-value=0.00026 Score=84.06 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=54.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
...+++++||+|||||++++++|+.+|.+++.++|.+.+.. +.+..+|.-+.... +++++||++++-
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~~ 710 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRLD 710 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSSC
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhcC
Confidence 45678999999999999999999999999999999875542 44566777665554 899999999854
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.00011 Score=63.00 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-hhccchh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAA-HSVYRVL 207 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~-~~~~~~~ 207 (390)
+..++|.|+|||||||+++.++. ..++.++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 35689999999999999999998 5665544
No 252
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00035 Score=69.96 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=67.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c-cchh----------c----c---------ccc-cccC------
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V-YRVL----------A----A---------SAA-QLYS------ 216 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~-~~~~----------~----i---------~~~-~~~~------ 216 (390)
++.+.++..++|.||+|||||||++++++.. | .+++ . . +.. .++.
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~ 211 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSG 211 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSS
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccC
Confidence 4556789999999999999999999998543 2 1010 0 0 000 0000
Q ss_pred ----c-------chh----------hHHHHHHHHHHHH--HhcCCeE----EEEcC-CCCCCChhhHHHHHHHhhcCCCc
Q psy11689 217 ----P-------YVG----------EAEQNVTQLFHRA--RLAAPAI----LFIDE-IERTYNCEYREQTADNAKKPRIP 268 (390)
Q Consensus 217 ----~-------~~g----------~~~~~i~~~f~~A--~~~~p~i----l~lDE-id~~l~~r~~~~~~~~~~~~~~~ 268 (390)
. +.| ...+..+..+++| ...+|.+ ++||| +.+.+|.. .....+.+.....+
T Consensus 212 ~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~t 290 (460)
T 2npi_A 212 ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVN 290 (460)
T ss_dssp CCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCC
Confidence 0 000 0124445677777 8899999 99999 89988887 44444555555677
Q ss_pred EEEeccCHH
Q psy11689 269 RTNGGYREQ 277 (390)
Q Consensus 269 ~i~~~~~~~ 277 (390)
.+.+.|...
T Consensus 291 viiVth~~~ 299 (460)
T 2npi_A 291 IMLVLCSET 299 (460)
T ss_dssp EEEEECCSS
T ss_pred EEEEEccCc
Confidence 788877643
No 253
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.28 E-value=0.0001 Score=62.66 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.++|.|||||||||+++.+ ...|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8888776643
No 254
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.26 E-value=0.00014 Score=62.96 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.+..++|.|+|||||||+++.++..++++++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456799999999999999999999988766543
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.26 E-value=0.00038 Score=66.09 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=48.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCc----------------chhhHHHHHHHHHH
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSP----------------YVGEAEQNVTQLFH 231 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~----------------~~g~~~~~i~~~f~ 231 (390)
-|++++ .++|+||||+|||+|+-.++... +..+++++..+-+.. .....++....+..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 356777 79999999999999988876543 344555655432211 01112222012222
Q ss_pred H---HHhcCCeEEEEcCCCCCCC
Q psy11689 232 R---ARLAAPAILFIDEIERTYN 251 (390)
Q Consensus 232 ~---A~~~~p~il~lDEid~~l~ 251 (390)
. ....+|++|++|-+.++..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHHhhccCceEEEEeccccccc
Confidence 2 2456899999999999974
No 256
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.25 E-value=0.00012 Score=67.29 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
.++|.||||||||||++.+|...+.+++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 4899999999999999999999887776543
No 257
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.25 E-value=0.00013 Score=62.31 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
..++|.|+|||||||+++.++..++++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999998876643
No 258
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.24 E-value=0.00012 Score=65.61 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.+..++|.|+|||||||+++.+|..++++++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 456799999999999999999999998776644
No 259
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.24 E-value=0.00013 Score=65.76 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
..+..++|.|+|||||||+++.+|..++++++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 356789999999999999999999998876654
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.24 E-value=0.00019 Score=61.32 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=28.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++.+.++..+.|.||+|+|||||+++++...
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5567889999999999999999999999876
No 261
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.23 E-value=0.00014 Score=65.07 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
.+..++|.|||||||||+++.+|..++++++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999998876554
No 262
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.22 E-value=0.00014 Score=63.54 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
.+..++|.|+|||||||+++.++..++++++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 35679999999999999999999998876654
No 263
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.19 E-value=0.0001 Score=67.83 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
+..+.|.|++||||||+++.+|..++++++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 78899999999999999999999998877643
No 264
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.19 E-value=0.00077 Score=68.64 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=60.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHH--HHhhc--cchhcccccc------------------------ccC---------
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTL--AAHSV--YRVLAASAAQ------------------------LYS--------- 216 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~ai--a~~~~--~~~~~i~~~~------------------------~~~--------- 216 (390)
++++++.++|.||||||||||++++ +.... -..++++..+ +..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 5678999999999999999999994 32211 0111111100 000
Q ss_pred -cchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCC-----hhhHHHHHH---HhhcCCCcEEEeccCHHH
Q psy11689 217 -PYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYN-----CEYREQTAD---NAKKPRIPRTNGGYREQT 278 (390)
Q Consensus 217 -~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~-----~r~~~~~~~---~~~~~~~~~i~~~~~~~~ 278 (390)
..... ...............+|.+|+|||+.+..+ ......... .+...+.+.+..+|+...
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 00000 112233344444567899999999998763 333333333 333347888999988654
No 265
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.19 E-value=0.0002 Score=64.51 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
....++.++|.||||+||+|.++.|+...+++.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 3456778999999999999999999999887654
No 266
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.18 E-value=0.00012 Score=63.05 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
.+..++|.|+|||||||+++.++..++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3567999999999999999999999887766
No 267
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.18 E-value=0.00068 Score=72.38 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=57.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh-----hccchh----cccc-ccccCcc---------hh--hHH-HHHHHHHHHH
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAH-----SVYRVL----AASA-AQLYSPY---------VG--EAE-QNVTQLFHRA 233 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~-----~~~~~~----~i~~-~~~~~~~---------~g--~~~-~~i~~~f~~A 233 (390)
.++..++|.||+|+||||++++++.. .|..+. .+.. .+++... .. ..+ ..+..++ .
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il--~ 682 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANIL--H 682 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHH--H
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHH--H
Confidence 45678999999999999999999853 221110 0000 0111100 00 011 1122222 2
Q ss_pred HhcCCeEEEEcCCCCCCChhhHHH----HHHHhhc-CCCcEEEeccCHH
Q psy11689 234 RLAAPAILFIDEIERTYNCEYREQ----TADNAKK-PRIPRTNGGYREQ 277 (390)
Q Consensus 234 ~~~~p~il~lDEid~~l~~r~~~~----~~~~~~~-~~~~~i~~~~~~~ 277 (390)
...+|++|++||+.+..++..... ....+.. .+.+.+..+|...
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e 731 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 731 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH
Confidence 367899999999988777654332 3344444 4778888888753
No 268
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.18 E-value=0.00051 Score=66.59 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=50.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccc-ccc-----cC--cchh-h-------HHHHHHHHHHHH
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASA-AQL-----YS--PYVG-E-------AEQNVTQLFHRA 233 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~-~~~-----~~--~~~g-~-------~~~~i~~~f~~A 233 (390)
++.+.++..++|.||+|+|||||+++++...... .+.+.. .++ .. .+.. + ....++..+..+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHH
Confidence 4556789999999999999999999999765321 122221 111 00 0111 1 112356777788
Q ss_pred HhcCCeEEEEcCCCC
Q psy11689 234 RLAAPAILFIDEIER 248 (390)
Q Consensus 234 ~~~~p~il~lDEid~ 248 (390)
....|++++++|+..
T Consensus 249 l~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 249 LRMKPTRILLAELRG 263 (361)
T ss_dssp TTSCCSEEEESCCCS
T ss_pred HhcCCCEEEEcCchH
Confidence 888999999999875
No 269
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.16 E-value=0.00019 Score=63.18 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.+..++|.|+|||||||+++.++...+++++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 456799999999999999999999888766543
No 270
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.16 E-value=0.00028 Score=67.14 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=26.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
-+++++..++|+||||+|||+|+..+|..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999999999999865
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.16 E-value=0.00024 Score=62.42 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
..++..+.|.||+|||||||++.++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4567889999999999999999999874
No 272
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.16 E-value=0.00019 Score=61.06 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
.++|.|+|||||||+++.++..++++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999998877664
No 273
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.15 E-value=0.00074 Score=66.77 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=44.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccc---hhccccc-ccc-Cc-----chhhHHHHHHHHHHHHHhcCCeEEEEcC
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYR---VLAASAA-QLY-SP-----YVGEAEQNVTQLFHRARLAAPAILFIDE 245 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~---~~~i~~~-~~~-~~-----~~g~~~~~i~~~f~~A~~~~p~il~lDE 245 (390)
.++..++|.||+|+||||++++++...... ++.+.-+ +.. .. ............+..+....|+++++.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 356779999999999999999999876422 2221111 110 00 0011111234455566778999999999
Q ss_pred CCC
Q psy11689 246 IER 248 (390)
Q Consensus 246 id~ 248 (390)
+..
T Consensus 245 iRd 247 (418)
T 1p9r_A 245 IRD 247 (418)
T ss_dssp CCS
T ss_pred cCC
Confidence 753
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.15 E-value=0.00017 Score=64.15 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.++|.|||||||||+++.++...+++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999888766543
No 275
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.15 E-value=0.00021 Score=64.64 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.+..++|.|+|||||||+++.+|..++++++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 456799999999999999999999998776543
No 276
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.15 E-value=0.0002 Score=65.49 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.++..++|.|||||||||+++.++...+++++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3677899999999999999999999888766543
No 277
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.15 E-value=0.0005 Score=62.10 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=54.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccc-------cccCcchhhH-----HHHHHHHHHHHHh----cC
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAA-------QLYSPYVGEA-----EQNVTQLFHRARL----AA 237 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~-------~~~~~~~g~~-----~~~i~~~f~~A~~----~~ 237 (390)
++.-++++||+|+||||++-.++... +..++.+... .+.+. .|-. ......+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 56778999999999999988887654 3333333211 11111 1100 0112235555544 35
Q ss_pred CeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccC
Q psy11689 238 PAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYR 275 (390)
Q Consensus 238 p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~ 275 (390)
+++|+|||+..+- ...- .....+...++..+..+++
T Consensus 90 ~dvViIDEaQ~l~-~~~v-e~l~~L~~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 90 TKVIGIDEVQFFD-DRIC-EVANILAENGFVVIISGLD 125 (223)
T ss_dssp CCEEEECSGGGSC-THHH-HHHHHHHHTTCEEEEECCS
T ss_pred CCEEEEecCccCc-HHHH-HHHHHHHhCCCeEEEEecc
Confidence 8999999998643 3221 2234444457777777763
No 278
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.14 E-value=0.00019 Score=63.88 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.++|.|||||||||+++.++...+++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999988766543
No 279
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.13 E-value=0.00023 Score=63.84 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=24.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567789999999999999999999999865
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.13 E-value=0.00026 Score=62.16 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+.++..+.|.|||||||||+++.++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678889999999999999999999876
No 281
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.13 E-value=0.00023 Score=61.43 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASA 211 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~ 211 (390)
.++..+.|.|++||||||+++.++..+ |++++.++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 357789999999999999999999886 777765554
No 282
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.12 E-value=0.00068 Score=65.36 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
..++|.||||+||||+++++|..++++++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 459999999999999999999999988855
No 283
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.12 E-value=0.00095 Score=63.60 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~ 211 (390)
+..++|+||+|||||+|++.+|...+..++..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3579999999999999999999999877776654
No 284
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.09 E-value=0.00086 Score=59.53 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..++..++|.|+||+||||+++.++..++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678899999999999999999998765
No 285
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.09 E-value=0.00026 Score=63.32 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
+..+.|.||+||||||+++.++...+++++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999998876554
No 286
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.08 E-value=0.00097 Score=66.13 Aligned_cols=74 Identities=22% Similarity=0.152 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccc-------------------cCcchh-hHHHHHHHHHHHH
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQL-------------------YSPYVG-EAEQNVTQLFHRA 233 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~-------------------~~~~~g-~~~~~i~~~f~~A 233 (390)
++..+++.||+|+||||++..+|..+ |..+..+++... .....+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 47789999999999999999998554 223322222110 000001 1222334556666
Q ss_pred HhcCCeEEEEcCCCCCC
Q psy11689 234 RLAAPAILFIDEIERTY 250 (390)
Q Consensus 234 ~~~~p~il~lDEid~~l 250 (390)
....++++++|.+..+-
T Consensus 176 ~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp TTTTCSEEEEEECCCSS
T ss_pred HhcCCCEEEEECCCCcc
Confidence 66789999999998654
No 287
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.08 E-value=0.00059 Score=73.05 Aligned_cols=59 Identities=7% Similarity=-0.055 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcC---CeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHhcC
Q psy11689 225 NVTQLFHRARLAA---PAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 225 ~i~~~f~~A~~~~---p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~t~ 283 (390)
..+..++++...+ |.+++|||+.+.+|..........+ ...+.+.+.++|.+..+..++
T Consensus 736 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aD 800 (842)
T 2vf7_A 736 AQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASD 800 (842)
T ss_dssp HHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCC
Confidence 3345666777775 7999999999999998877765554 345788999999876664444
No 288
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.06 E-value=0.00036 Score=63.61 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~ 205 (390)
++.+.++..+.|.||+|+|||||++.++...|..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3456778889999999999999999999877643
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.06 E-value=0.00032 Score=61.78 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.++..+.|.||+||||||++++++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788899999999999999999998874
No 290
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.06 E-value=0.0014 Score=70.89 Aligned_cols=60 Identities=5% Similarity=-0.062 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcC---CeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcC
Q psy11689 224 QNVTQLFHRARLAA---PAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 224 ~~i~~~f~~A~~~~---p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~ 283 (390)
+..+..++++.... |.+++|||+.+.+|..........+. ..+.+.+.++|.+..+..++
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aD 933 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSD 933 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCC
Confidence 33445666777765 59999999999999988777665543 35788999999876654444
No 291
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.05 E-value=0.0018 Score=61.25 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++..+.|.||+||||||+++.+|...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57889999999999999999999654
No 292
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.04 E-value=0.00028 Score=71.67 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=47.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhcccccc-ccC---cc--------hhhHHHHHHHHHHHHHhcCCeE
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASAAQ-LYS---PY--------VGEAEQNVTQLFHRARLAAPAI 240 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~~~-~~~---~~--------~g~~~~~i~~~f~~A~~~~p~i 240 (390)
+..+..++|.||+||||||++++++..... ..+.+..+. +.. .+ .+...-.+...+..+..+.|++
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 457788999999999999999999876542 122222211 110 00 0111123455666777889999
Q ss_pred EEEcCCCC
Q psy11689 241 LFIDEIER 248 (390)
Q Consensus 241 l~lDEid~ 248 (390)
+++.|+..
T Consensus 337 iivgEir~ 344 (511)
T 2oap_1 337 IIVGEVRG 344 (511)
T ss_dssp EEESCCCS
T ss_pred EEeCCcCH
Confidence 99999864
No 293
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.04 E-value=0.00032 Score=63.88 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYR 205 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~ 205 (390)
.+..+.|.|||||||||+++.++...|..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 46789999999999999999999887754
No 294
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.03 E-value=0.00039 Score=60.99 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh-ccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS-VYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~-~~~~~~i 209 (390)
.+..+.|.|++||||||+++.++..+ |++++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 46779999999999999999999988 5666544
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.03 E-value=0.0036 Score=62.13 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=49.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccc-------------------cCc-chhhHHHHHHHHHHHH
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQL-------------------YSP-YVGEAEQNVTQLFHRA 233 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~-------------------~~~-~~g~~~~~i~~~f~~A 233 (390)
+|..++++|++|+||||++..+|..+ |..+..+++... ... ........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998654 333322222111 010 1112334456677788
Q ss_pred HhcCCeEEEEcCCCCCCC
Q psy11689 234 RLAAPAILFIDEIERTYN 251 (390)
Q Consensus 234 ~~~~p~il~lDEid~~l~ 251 (390)
....++++++|.+..+-.
T Consensus 179 ~~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HHTTCSEEEEECCCCSSC
T ss_pred HhCCCCEEEEECCCcccc
Confidence 887899999999976543
No 296
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.02 E-value=0.00034 Score=61.74 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.+..+.|.|+|||||||+++.++..++.+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 467899999999999999999999887665443
No 297
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.02 E-value=0.00094 Score=76.14 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=61.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchh----------------ccccccccCcchhhHHHHHHHHHHHHH
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVL----------------AASAAQLYSPYVGEAEQNVTQLFHRAR 234 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~----------------~i~~~~~~~~~~g~~~~~i~~~f~~A~ 234 (390)
|++.++.+.+|||+|||||||+-.++.+. |-.+. -++..+++..++...++.+..+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 45677889999999999999988776432 22222 244445555567777889988999999
Q ss_pred hcCCeEEEEcCCCCCCChh
Q psy11689 235 LAAPAILFIDEIERTYNCE 253 (390)
Q Consensus 235 ~~~p~il~lDEid~~l~~r 253 (390)
...|++|++|.+.++.+..
T Consensus 1507 s~~~~~vvvDsv~al~~~~ 1525 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKA 1525 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTT
T ss_pred cCCCCEEEEccHHhCCccc
Confidence 9999999999999999764
No 298
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.00 E-value=0.00031 Score=62.67 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=25.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
.++|.||||+||+|.++.||...+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4789999999999999999999887654
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.00 E-value=0.00037 Score=61.60 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=27.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh-ccchh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS-VYRVL 207 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~-~~~~~ 207 (390)
+.++..+.|.|+|||||||+++.++... ++.++
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 4567789999999999999999999887 55554
No 300
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.00 E-value=0.0004 Score=61.58 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.+.+++.+.|.||+|+|||||+++++...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999999999876
No 301
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.99 E-value=0.00041 Score=61.39 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc--cchh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV--YRVL 207 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~--~~~~ 207 (390)
.++..+.|.||+|||||||++.++...+ +.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4677899999999999999999999876 4443
No 302
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.99 E-value=0.0014 Score=70.79 Aligned_cols=60 Identities=8% Similarity=-0.060 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcC---CeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcC
Q psy11689 224 QNVTQLFHRARLAA---PAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTAN 283 (390)
Q Consensus 224 ~~i~~~f~~A~~~~---p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~ 283 (390)
+..+..++++...+ |.+++|||+.+.+|........+.+. ..+.+.+.++|.+..+..++
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aD 915 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTAD 915 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCC
Confidence 33345666777765 59999999999999988777665553 34788899999876554333
No 303
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.99 E-value=0.00039 Score=63.86 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
.++..+.|.||+||||||+++.+|..+|+.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 35678999999999999999999998886554
No 304
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00046 Score=59.81 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++..+.|.||+|+|||||++.++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999999865
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.98 E-value=0.00028 Score=62.06 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=25.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.+.|.|++||||||+++.++. .|++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 589999999999999999999 77766543
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.97 E-value=0.00043 Score=65.53 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=28.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++.++++..+.|+||+|+|||||+++|++..
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 5678999999999999999999999999775
No 307
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.97 E-value=0.00032 Score=62.41 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.++|.|+|||||||+++.++...+++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999888766544
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.95 E-value=0.00033 Score=60.59 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.++|.|+|||||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998876
No 309
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.94 E-value=0.00047 Score=60.88 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
.+..+.|.|+|||||||+++.++..++...+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 56789999999999999999999987654443
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.91 E-value=0.00044 Score=60.44 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
.+.|.|++||||||+++.++..++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4889999999999999999999887654
No 311
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.90 E-value=0.0048 Score=62.03 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=26.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+.+..+..++|.||+|+|||||+++||...
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 456778899999999999999999999764
No 312
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.90 E-value=0.00014 Score=70.47 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=58.5
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--c--cC-CcccchHHHHHHh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--T--KL-NEEVELSENVQRE 82 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~--~~-~~~v~l~~~la~~ 82 (390)
.++++|++||+++.+|+++++ ||. .+.+|. +.++|.+++.. . .. -++.++ +.|++.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~----------------Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l-~~la~~ 282 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARR----------------RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI-EQIVQQ 282 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHT----------------TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH-HHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHh----------------hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH-HHHHHH
Confidence 478999999999998888876 777 556665 36778888765 1 11 134566 889999
Q ss_pred hcCCccccccccccccchhh
Q psy11689 83 EEGIAGENLQRGGGEEGIEL 102 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~ 102 (390)
|.||+|+++..+|.+++...
T Consensus 283 t~G~s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 283 SDAFSGADMTQLCREASLGP 302 (357)
T ss_dssp TTTCCHHHHHHHHHHHHTHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998887653
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00047 Score=60.33 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
.+..+.|.|++||||||+++.++.. |++++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 4567999999999999999999998 766653
No 314
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.88 E-value=0.00045 Score=59.88 Aligned_cols=31 Identities=26% Similarity=0.144 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhh---ccchhccc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHS---VYRVLAAS 210 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~---~~~~~~i~ 210 (390)
.+.|.|+|||||||+++.++..+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999987 67666543
No 315
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.88 E-value=0.0011 Score=62.63 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++.+.+|..++|.||+|+||||+++.+|...
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3446788999999999999999999999664
No 316
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.86 E-value=0.00051 Score=60.90 Aligned_cols=28 Identities=36% Similarity=0.511 Sum_probs=25.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.++..+.|.||+|+|||||+++++....
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999998764
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.86 E-value=0.00061 Score=59.92 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=24.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
+..++|.|+|||||||+++.++..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 567999999999999999999998765
No 318
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.86 E-value=0.00054 Score=62.30 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
.+..+.|.|||||||||+++.+|..++++++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 3567999999999999999999999887654
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.86 E-value=0.00039 Score=61.30 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
.+.|.||+||||||+++.++. +|++++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 588999999999999999987 676654
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.84 E-value=0.00036 Score=62.93 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=20.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHH-Hhh
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLA-AHS 202 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia-~~~ 202 (390)
++.+.++..+.|.||+|||||||++.++ ...
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4556788999999999999999999999 664
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.84 E-value=0.00068 Score=60.20 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.++..+.|.||+|+|||||++.++....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4677899999999999999999998764
No 322
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.84 E-value=0.00055 Score=60.36 Aligned_cols=26 Identities=31% Similarity=0.683 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+++.+.|.||+|+|||||++.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57789999999999999999998754
No 323
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.84 E-value=0.00046 Score=61.99 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
.++|.|+|||||||+++.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999888765543
No 324
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.82 E-value=0.0045 Score=58.19 Aligned_cols=76 Identities=25% Similarity=0.259 Sum_probs=45.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc---cchhcccccc--------c--------cCcc---hh-hHHHHHHHHHHHH
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQ--------L--------YSPY---VG-EAEQNVTQLFHRA 233 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~--------~--------~~~~---~g-~~~~~i~~~f~~A 233 (390)
++..+.++|++|+||||++..+|.... ..+..++..- + +.-+ .+ ......+.+++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 677899999999999999999995532 2221111100 0 0000 01 1112235567777
Q ss_pred HhcCCeEEEEcCCCC-CCCh
Q psy11689 234 RLAAPAILFIDEIER-TYNC 252 (390)
Q Consensus 234 ~~~~p~il~lDEid~-~l~~ 252 (390)
....+++|++|++-. ..+.
T Consensus 177 ~~~~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDE 196 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCH
T ss_pred HhCCCCEEEEeCCCCccccH
Confidence 667899999999944 3443
No 325
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.80 E-value=0.0012 Score=59.60 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~ 202 (390)
-.+++.|+||+||||++-.+|..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 469999999999999998888654
No 326
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.79 E-value=0.0015 Score=64.45 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
..+.-++|+|+|||||||+++.++...++.++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 3467799999999999999999999888766544
No 327
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.79 E-value=0.00013 Score=73.14 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=39.4
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-----eeeCCC-CCccCccccccccCCcccchHHHHHHhh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-----VIDLPT-APQGRETELPFTKLNEEVELSENVQREE 83 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-----~i~ip~-~~~~r~~~l~~~~~~~~v~l~~~la~~t 83 (390)
+-|+++++||+++.+|++++| ||||+ .+++|. +.++|++|+.+.. ..++ +.+++.|
T Consensus 189 ~~v~i~attn~~~~ld~a~~r--------------~~rfd~~~~~~v~~p~~~~~~R~~il~~~~---~~dl-~~~a~~t 250 (456)
T 2c9o_A 189 DVIYIEANSGAVKRQGRCDTY--------------ATEFDLEAEEYVPLPKGDVHKKKEIIQDVT---LHDL-DVANARP 250 (456)
T ss_dssp EEEEEETTTCCEEEEEEETTS--------------CCTTSCSSSSEECCCCSCSEEEEEEEEEEE---HHHH-HHTC---
T ss_pred CEEEEEcCCCCcccCChhhcC--------------CcccCcceeEecCCCchhHHHHHHHHHHHH---HHHH-HHHHHhC
Confidence 346666999999999988888 99998 445555 3567889988632 2367 8899999
Q ss_pred cCCcccccccccc
Q psy11689 84 EGIAGENLQRGGG 96 (390)
Q Consensus 84 ~G~~g~~l~~~~~ 96 (390)
+| |+|+.++|.
T Consensus 251 ~g--gadl~~l~~ 261 (456)
T 2c9o_A 251 QG--GQDILSMMG 261 (456)
T ss_dssp -------------
T ss_pred CC--hhHHHHHHh
Confidence 99 999998873
No 328
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.78 E-value=0.00078 Score=59.47 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.++..++|.||||+||||+++.++....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4678899999999999999999998763
No 329
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.77 E-value=0.00057 Score=60.21 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
...+.|+|++||||||+++.++..+|++++.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 4568999999999999999999988877764
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.00063 Score=59.20 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhh---ccchhcc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHS---VYRVLAA 209 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~---~~~~~~i 209 (390)
.+.|.|++||||||+++.++..+ |++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 47899999999999999999988 7776543
No 331
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.77 E-value=0.00021 Score=66.76 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=57.4
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--cc--C-CcccchHHHHHHh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--TK--L-NEEVELSENVQRE 82 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~~--~-~~~v~l~~~la~~ 82 (390)
.+++++++||+++.+|+++++ ||+ .+.+|. +.++|..++.. .+ . -++.++ +.+++.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~----------------R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~-~~la~~ 220 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALR----------------RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEAL-RRLAKI 220 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHH----------------HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHH-HHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHh----------------hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Confidence 569999999999999998886 565 455555 36777777754 11 1 134456 889999
Q ss_pred hcCCccccccccccccchhhh
Q psy11689 83 EEGIAGENLQRGGGEEGIELR 103 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~~ 103 (390)
|.|++|++|..+|.+++....
T Consensus 221 ~~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 221 TDGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp TTTCCHHHHHHHHHHHTTHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999988877643
No 332
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.76 E-value=0.00078 Score=64.51 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~ 211 (390)
.+..++|.||+|||||+|+..+|..++..++..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 34579999999999999999999998876665443
No 333
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.75 E-value=0.00062 Score=59.79 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
.+.|.|++||||||+++.+|..++++++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 68999999999999999999998877654
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.74 E-value=0.0011 Score=60.63 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+..|.|.|++||||||+++.++..+++++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 456799999999999999999999988774
No 335
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.74 E-value=0.0023 Score=63.84 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=26.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.|+.++..++|.|+||+|||+|+..+|..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999999999854
No 336
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.73 E-value=0.0015 Score=63.32 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++.+.+|..++|.||+|+||||+++.+|...
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456788999999999999999999999654
No 337
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.71 E-value=0.00086 Score=58.31 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
++.+.|.||+|+|||||+++++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34688999999999999999997754
No 338
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.70 E-value=0.002 Score=60.73 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.++..+++.||+|+||||++..+|..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999998554
No 339
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.70 E-value=0.003 Score=60.39 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.+|..++|.||+|+||||+++.+|...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999999654
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.69 E-value=0.0018 Score=61.46 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+.++..+.|.||+|+|||||++.|+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 5678899999999999999999999764
No 341
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.68 E-value=0.0009 Score=60.52 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
..+..+.|.|++||||||+++.++..+|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 356789999999999999999999988876643
No 342
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.68 E-value=0.00074 Score=58.63 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..++|.||||+||||+++.++...+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 4689999999999999999997553
No 343
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.67 E-value=0.00087 Score=59.65 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
.+..+.|.|++||||||+++.++. .|++++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 346799999999999999999998 7766554
No 344
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.66 E-value=0.0011 Score=57.36 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.++..++|.|+||+||||+++.++..++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999998765
No 345
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.64 E-value=0.0012 Score=62.49 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA 212 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~ 212 (390)
.+.-++|.||+|+|||+|+..+|...+..++..++-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 356789999999999999999999888766655443
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.63 E-value=0.0013 Score=58.26 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
++....++.+.|.||+|+|||||+++++....
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44445678899999999999999999997653
No 347
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.62 E-value=0.0043 Score=56.23 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVL 207 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~ 207 (390)
..++++||+|+|||.++.+++...+..++
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~l 137 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTL 137 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEE
Confidence 35999999999999999888876654433
No 348
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.0023 Score=57.53 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~ 200 (390)
|++++.-++|+|+||+|||+++..+|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 678899999999999999999988764
No 349
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.61 E-value=0.005 Score=63.15 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=37.0
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
..+.|-+...+.+.+.+... -...+.++|+||+|+|||+||..++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 36888888888888877431 124567999999999999999999754
No 350
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.53 E-value=0.0016 Score=61.64 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA 212 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~ 212 (390)
+.-++|.||+|+|||+|+..+|...+..++..++-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 34588999999999999999999887666554443
No 351
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.52 E-value=0.0011 Score=62.04 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhh-ccchhc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHS-VYRVLA 208 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~-~~~~~~ 208 (390)
..++|.|+|||||||+++.++... ++.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 468999999999999999999863 665553
No 352
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.51 E-value=0.0059 Score=58.46 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=25.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+.+..+..+.|.||||+|||||+++++...
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 446788899999999999999999998653
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.49 E-value=0.0022 Score=56.52 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
..++..+.|.||+||||||+++.++...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567789999999999999999999765
No 354
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.49 E-value=0.0012 Score=61.67 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
.+..|.|.|++||||||+++.++ ..|++++.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 35679999999999999999999 57766553
No 355
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.49 E-value=0.0012 Score=58.54 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
+..+.|.|++||||||+++.++..+|++++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3569999999999999999999998877654
No 356
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.43 E-value=0.0072 Score=57.50 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=24.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
...++..++++||+|+||||++..+|..+
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999999999999998553
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.40 E-value=0.0017 Score=62.21 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
..++|.||+|||||+|+..+|..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999886555443
No 358
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.40 E-value=0.0043 Score=64.23 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAA 212 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~ 212 (390)
.+..|+|+|+|||||||++++++..+ |.+++.++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 46679999999999999999999988 7777766543
No 359
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.40 E-value=0.0014 Score=57.99 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccchhcccccc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQ 213 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~ 213 (390)
.+.+++|.||+|+|||+|+..++...+ .++..+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 467899999999999999999998865 665544433
No 360
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.38 E-value=0.0034 Score=60.90 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=50.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhcc--chhccccccccCcchhh-------------HHHHHHHHHHHHHhcCCeEE
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASAAQLYSPYVGE-------------AEQNVTQLFHRARLAAPAIL 241 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~~~~~~~~~g~-------------~~~~i~~~f~~A~~~~p~il 241 (390)
....++++|++||||+++++++...++. .|+.++|..+-...... ... -.-.|..| ....|
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a---~~gtl 226 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELA---DQGTL 226 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHT---TTSEE
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhc---CCCeE
Confidence 3456999999999999999999877653 37888887653322111 000 00123332 44689
Q ss_pred EEcCCCCCCChhhHHHHHHHh
Q psy11689 242 FIDEIERTYNCEYREQTADNA 262 (390)
Q Consensus 242 ~lDEid~~l~~r~~~~~~~~~ 262 (390)
||||++.+ +........+.+
T Consensus 227 fldei~~l-~~~~Q~~Ll~~l 246 (368)
T 3dzd_A 227 FLDEVGEL-DQRVQAKLLRVL 246 (368)
T ss_dssp EEETGGGS-CHHHHHHHHHHH
T ss_pred EecChhhC-CHHHHHHHHHHH
Confidence 99999986 444444444444
No 361
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.36 E-value=0.003 Score=59.24 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..+..+.|.||+|||||||++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4677899999999999999999997765
No 362
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.36 E-value=0.0027 Score=65.31 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
...++|.||||||||+++.+++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998654
No 363
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.30 E-value=0.00063 Score=66.45 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=57.8
Q ss_pred heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--cc--C-CcccchHHHHHHh
Q psy11689 10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--TK--L-NEEVELSENVQRE 82 (390)
Q Consensus 10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~~--~-~~~v~l~~~la~~ 82 (390)
.+|++|++||+++.+|+++++ ||. .|.+|. +.++|.+++.. .. . -.+.++ +.|++.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~----------------R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~-~~la~~ 313 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLR----------------RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL-AQLARM 313 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHT----------------TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHH-HHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHc----------------CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Confidence 468999999999998888886 776 566666 47788888864 11 1 123456 889999
Q ss_pred hcCCccccccccccccchhh
Q psy11689 83 EEGIAGENLQRGGGEEGIEL 102 (390)
Q Consensus 83 t~G~~g~~l~~~~~ea~~~~ 102 (390)
+.|++++++..++.+++...
T Consensus 314 ~~g~~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 314 TDGYSGSDLTALAKDAALGP 333 (389)
T ss_dssp TTTCCHHHHHHHHHHHTTHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988877653
No 364
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.27 E-value=0.009 Score=59.35 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.|+.++.-++|.|+||+|||+++..+|..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 36888999999999999999999998854
No 365
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.25 E-value=0.0089 Score=60.72 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+.-|+++|.||+||||+++.+|..+++.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 456799999999999999999999886544
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.23 E-value=0.0027 Score=60.03 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..+..+.|.||+|||||||+++++...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678899999999999999999998754
No 367
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.23 E-value=0.0027 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~ 202 (390)
-|+|.||+|+|||||++.+..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998664
No 368
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.20 E-value=0.0028 Score=62.07 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
+.-++|.||+|+|||+|+..+|...+..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345889999999999999999988876655443
No 369
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.19 E-value=0.0032 Score=56.82 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..+..+.|.||||+||||+++.++..++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998875
No 370
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.12 E-value=0.012 Score=59.33 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=43.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccccc-------------------Ccch-hhHHHHHHHHHHH
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLY-------------------SPYV-GEAEQNVTQLFHR 232 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~-------------------~~~~-g~~~~~i~~~f~~ 232 (390)
.++..|+++|+||+||||++..+|..+ |..+..+++.... .... ..........+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999654 3333333321100 0000 1111222345555
Q ss_pred HHhcCCeEEEEcCCCCCC
Q psy11689 233 ARLAAPAILFIDEIERTY 250 (390)
Q Consensus 233 A~~~~p~il~lDEid~~l 250 (390)
+.....+++|+|-+-..-
T Consensus 179 ~~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHK 196 (504)
T ss_dssp HHHTTCCEEEEEECCCCT
T ss_pred HHHCCCcEEEEeCCCCcc
Confidence 555667899999887764
No 371
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.11 E-value=0.0064 Score=60.66 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=33.0
Q ss_pred cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..|-.++....++++. +++++.+....... . .....++|.|+||||||+++.+++..+.
T Consensus 12 ~~~~~~~~p~~~~~Ln--~~Q~~av~~~~~~i-------~----~~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLT--EGQKNAFNIVMKAI-------K----EKKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp ---------CCSSCCC--HHHHHHHHHHHHHH-------H----SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCccccCCCccccCC--HHHHHHHHHHHHHH-------h----cCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3465556666666663 45555555443321 1 1223899999999999999999987653
No 372
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.10 E-value=0.012 Score=61.00 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=20.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+..+++.||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 5679999999999999988776443
No 373
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.07 E-value=0.0035 Score=53.87 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+.++ ..+|+||+|+|||+|+++|+..++
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 3344 789999999999999999987654
No 374
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.05 E-value=0.0032 Score=60.89 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=27.8
Q ss_pred hhcCCCC--CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 171 ERLAIPK--PKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 171 ~~~~~~~--~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
-.+.+.+ +..+.|.||+|||||||++++++...
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445566 88999999999999999999998754
No 375
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.04 E-value=0.003 Score=57.17 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA 209 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i 209 (390)
...+.|.|||||||||+++.++...+++.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45689999999999999999999988776543
No 376
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.04 E-value=0.0029 Score=55.94 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
..|.|.|++|||||++++.+|..+|++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 469999999999999999999999998874
No 377
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.02 E-value=0.0078 Score=56.62 Aligned_cols=73 Identities=19% Similarity=0.126 Sum_probs=45.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccccc-------------------Ccchh-hHHHHHHHHHHHHH
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLY-------------------SPYVG-EAEQNVTQLFHRAR 234 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~-------------------~~~~g-~~~~~i~~~f~~A~ 234 (390)
+..+++.|++|+||||++..+|..+ +..+..++..... ....+ .....+...+..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 7789999999999999999999654 3333322221100 00000 11222345666666
Q ss_pred hcCCeEEEEcCCCCCC
Q psy11689 235 LAAPAILFIDEIERTY 250 (390)
Q Consensus 235 ~~~p~il~lDEid~~l 250 (390)
....+++++|=+-..-
T Consensus 178 ~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HTTCSEEEEECCCSCC
T ss_pred hCCCCEEEEeCCCCcc
Confidence 5677899999987765
No 378
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.02 E-value=0.007 Score=72.78 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=52.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY 250 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l 250 (390)
..+..+.||+|||||.+++.+|+.+|.+++.++|.+.+.- +.+..+|.-+... .+..++||+.++-
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~ 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLE 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCC
Confidence 4557899999999999999999999999999998765442 3455666665544 5789999999964
No 379
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.00 E-value=0.0059 Score=53.09 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccchhcccccc
Q psy11689 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQ 213 (390)
Q Consensus 181 vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~ 213 (390)
+|++|++|||||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999988 77777766544
No 380
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.96 E-value=0.012 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
++..++|.|+||+|||+|+++++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999865
No 381
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.94 E-value=0.01 Score=63.20 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=35.0
Q ss_pred CccChHHHHHHHHHHHhccccCHH-HhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 145 ELGGLKGVRALMEKTVEWPFKYAR-EFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 145 ~i~g~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
+++-.....+.+.+.-..|..... .+.. .+..+..+++.||+|+|||+++..++..
T Consensus 76 ~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 76 GREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 666666666666655544433221 1111 1234678999999999999988777643
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.93 E-value=0.0019 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+.|.|++||||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998774
No 383
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.81 E-value=0.021 Score=63.32 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=37.3
Q ss_pred CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
..+.|-+...+++.+.+... -...+.+.|+|+.|+|||+||+.++..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 36889899988888877431 124567899999999999999999865
No 384
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.80 E-value=0.0044 Score=59.67 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=27.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+.+.++..+.|.||+|+|||||++.|++...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3466899999999999999999999998764
No 385
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.76 E-value=0.0053 Score=61.02 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=27.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+.+.++..+.|.||+|||||||++.|++...
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567899999999999999999999997754
No 386
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.74 E-value=0.0045 Score=61.16 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.3
Q ss_pred hcCCCCCce--EEEEcCCCChHHHHHHHHHHh
Q psy11689 172 RLAIPKPKG--ILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 172 ~~~~~~~~~--vLl~GppGtGKT~La~aia~~ 201 (390)
++.+.+|.. +.|.||+|+|||||++++++.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 345678888 999999999999999999865
No 387
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.73 E-value=0.005 Score=57.11 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.+.|.||+|+|||||++++++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999954
No 388
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.71 E-value=0.018 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
...+++|+++|.||||+|-.+|..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR 51 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR 51 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999844
No 389
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.70 E-value=0.0064 Score=57.85 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+..+.|.||+||||||++++++....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455799999999999999999987754
No 390
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.68 E-value=0.0062 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.+.++||.|+||+||||++.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5789999999999999999999874
No 391
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.68 E-value=0.018 Score=57.04 Aligned_cols=75 Identities=27% Similarity=0.315 Sum_probs=46.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCcc-------------------hh-hHHHHHHHHHH
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSPY-------------------VG-EAEQNVTQLFH 231 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~~-------------------~g-~~~~~i~~~f~ 231 (390)
.++..++++|++|+||||++..+|..+ |..+..+++....... .+ .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356789999999999999999998554 3334333332111110 00 11222355666
Q ss_pred HHHhcCCeEEEEcCCCCCC
Q psy11689 232 RARLAAPAILFIDEIERTY 250 (390)
Q Consensus 232 ~A~~~~p~il~lDEid~~l 250 (390)
.+.....+++|+|=+-.+-
T Consensus 178 ~~~~~~~D~VIIDTpG~l~ 196 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLH 196 (433)
T ss_dssp HHHHTTCSEEEEECCCCCT
T ss_pred HHHhCCCCEEEEECCCccc
Confidence 6665677899999986553
No 392
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.67 E-value=0.032 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++..+++.|++|+||||++..+|..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999999554
No 393
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.67 E-value=0.0031 Score=59.10 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=20.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+.-|.|.||+||||||+++.++..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45699999999999999999998766
No 394
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.63 E-value=0.026 Score=56.41 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~ 206 (390)
.+..|+++|.||+||||+++.++..++..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 456799999999999999999998876444
No 395
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.61 E-value=0.0079 Score=56.96 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=26.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.|+.++.-++|.|+||+|||+|+..+|...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999998543
No 396
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.61 E-value=0.011 Score=58.55 Aligned_cols=26 Identities=38% Similarity=0.382 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++..++++|++|+||||++..+|..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999764
No 397
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.60 E-value=0.0046 Score=54.06 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=26.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
++.+.++..+.|.|++|+|||||+++++...
T Consensus 20 ~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 20 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred HCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667788899999999999999999997543
No 398
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.57 E-value=0.015 Score=51.18 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=52.2
Q ss_pred CCCceEEEEcCCCChHH-HHHHHHHHhh--ccchhccccccccCcch----hhHH--------HHHHHHHHHHHhcCCeE
Q psy11689 176 PKPKGILLYGPPGCAKT-SLVRTLAAHS--VYRVLAASAAQLYSPYV----GEAE--------QNVTQLFHRARLAAPAI 240 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT-~La~aia~~~--~~~~~~i~~~~~~~~~~----g~~~--------~~i~~~f~~A~~~~p~i 240 (390)
..+.-.++|||.|+||| .|.+++.+.. +..++.++.. +-..+. .... ....+++.. ....++
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~--~~~~Dv 94 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQE--ALGVAV 94 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHH--HHTCSE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHh--ccCCCE
Confidence 35677899999999999 8888886543 3444444422 111111 0000 011123332 234689
Q ss_pred EEEcCCCCCCChhhHHHHHHHhhcCCCcEEEecc
Q psy11689 241 LFIDEIERTYNCEYREQTADNAKKPRIPRTNGGY 274 (390)
Q Consensus 241 l~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~ 274 (390)
|+|||+.-+ . . ..+....+...++..+..+.
T Consensus 95 IlIDEaQFf-k-~-~ve~~~~L~~~gk~VI~~GL 125 (195)
T 1w4r_A 95 IGIDEGQFF-P-D-IVEFCEAMANAGKTVIVAAL 125 (195)
T ss_dssp EEESSGGGC-T-T-HHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEchhhh-H-H-HHHHHHHHHHCCCeEEEEec
Confidence 999999987 3 3 33344555566666665554
No 399
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.57 E-value=0.013 Score=60.68 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q psy11689 181 ILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 181 vLl~GppGtGKT~La~aia~~~ 202 (390)
+.|.||+|+|||||++++++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999999753
No 400
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.57 E-value=0.029 Score=57.20 Aligned_cols=43 Identities=12% Similarity=-0.031 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689 148 GLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 148 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~ 200 (390)
|-+..++++.+.+... .-.....+.|+|+.|+|||+||+.+++
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 8888888888777421 012357799999999999999999996
No 401
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.56 E-value=0.012 Score=58.62 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+..++|+||||+|||+|++.++....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 577899999999999999999986543
No 402
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.55 E-value=0.0051 Score=62.88 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=26.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+.++..+.|.|++|||||||+++++..++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 45788899999999999999999998875
No 403
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.50 E-value=0.031 Score=55.55 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
|+.++.-++|.|+||+|||+++-.+|...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 78899999999999999999999988543
No 404
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.48 E-value=0.0056 Score=55.04 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
..++..+.|.||+|+||||+++.++..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 456788999999999999999999887
No 405
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.44 E-value=0.0056 Score=52.75 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
..+.|.|++|||||||++.++....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999997754
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.44 E-value=0.028 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
....+.|.|+||+|||||+..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998664
No 407
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.44 E-value=0.0099 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
....+.|.|++|+|||||++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578999999999999999998764
No 408
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.41 E-value=0.0071 Score=54.45 Aligned_cols=31 Identities=13% Similarity=-0.027 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA 208 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~ 208 (390)
...|.|.|++|||||++++.+|..+|++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4569999999999999999999999988764
No 409
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.37 E-value=0.015 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
..++|.|+||+|||||++++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999854
No 410
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.36 E-value=0.0084 Score=60.20 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=26.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
++.+.+ ..+.|.||+|+|||||+++++....
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 455677 8999999999999999999997643
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.33 E-value=0.02 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~ 202 (390)
..++|.|++|+|||||++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 468999999999999999999754
No 412
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.32 E-value=0.0045 Score=56.77 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh-ccch
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS-VYRV 206 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~-~~~~ 206 (390)
.++..|.|.|++|+||||+++.++..+ +..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456789999999999999999999887 4433
No 413
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.27 E-value=0.019 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=19.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
+..+++.+|+|+|||.++-..+..
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999988777643
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.24 E-value=0.033 Score=53.22 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
...+..+.+.|+||+|||||++.++...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999998654
No 415
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.21 E-value=0.011 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.++|.|++|+|||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 416
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.19 E-value=0.011 Score=53.35 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
|..+.+.|++|+||||+++.++..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5679999999999999999999887
No 417
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.18 E-value=0.01 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~ 202 (390)
-.++|.|++|+|||||++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 418
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.14 E-value=0.014 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
...+.+.|++|+|||||+..++..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998765
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.11 E-value=0.013 Score=52.22 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+..+.|.|++|+||||+++.++..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999997764
No 420
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.11 E-value=0.023 Score=52.00 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.++|.|+||+|||+|++++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999854
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.08 E-value=0.013 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+.-.+|+||+|+|||+++.|+.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467999999999999999997544
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.025 Score=48.49 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.....+++.|++|+|||+|+.++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998653
No 423
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.97 E-value=0.014 Score=57.16 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~ 200 (390)
+..+..+.|.|+||+|||||++++..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34677899999999999999999987
No 424
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.94 E-value=0.055 Score=59.12 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=32.6
Q ss_pred cChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 147 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.|-+...+.|.+.+... ...+-+.|+|+.|.|||+||+.++..
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 56677777777766421 23567999999999999999999853
No 425
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.94 E-value=0.017 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=19.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
+.-++++||+|+||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999998666654
No 426
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.92 E-value=0.012 Score=60.59 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc----cchhccccc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV----YRVLAASAA 212 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~----~~~~~i~~~ 212 (390)
.+..|+|.|+|||||||++++++..++ .+++.++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 456799999999999999999999876 455555443
No 427
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.87 E-value=0.048 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.+.|.|+||+|||||+++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999854
No 428
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.87 E-value=0.018 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
.+..+.+.|++|+||||+++.++..++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5778999999999999999999998875
No 429
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.86 E-value=0.015 Score=56.10 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+..+.|.||||+|||||+++++....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 467899999999999999999987543
No 430
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.85 E-value=0.027 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
..+.|.|+||+|||+|++++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999999863
No 431
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.85 E-value=0.013 Score=52.80 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
..+..|.|.||+|+||||+++.++..+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999988743
No 432
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.84 E-value=0.031 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
..++|.|+||+|||+|++++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45999999999999999999853
No 433
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.80 E-value=0.028 Score=58.46 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q psy11689 179 KGILLYGPPGCAKTSLVRTL 198 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~ai 198 (390)
.-.||.||||||||+.+..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 35799999999999554443
No 434
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.77 E-value=0.016 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
..++|.|++|+|||+|++.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999853
No 435
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.76 E-value=0.014 Score=52.10 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~ 210 (390)
-.|.|+|..||||||+++.++. .|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4589999999999999999987 788776443
No 436
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.76 E-value=0.018 Score=52.23 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+..+.|.|++|+||||+++.++..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999997764
No 437
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.68 E-value=0.022 Score=50.03 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
....+++.|++|+|||+|+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998764
No 438
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.67 E-value=0.021 Score=54.67 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
|+.++.-++|.|+||+|||+|+..+|..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999999855
No 439
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.63 E-value=0.022 Score=51.22 Aligned_cols=29 Identities=28% Similarity=0.175 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
..+..+.+.|++|+||||+++.++..++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35778999999999999999999987654
No 440
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.63 E-value=0.02 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.+++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
No 441
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.62 E-value=0.021 Score=55.62 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+.+.++..++|.||+|+|||+|++.+++..
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 346689999999999999999999998754
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.59 E-value=0.02 Score=53.87 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+..+.|.||||+|||||+++++ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 46789999999999999999998 543
No 443
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.57 E-value=0.016 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.++|.|++|+|||+|++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 444
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.54 E-value=0.0097 Score=58.60 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~ 200 (390)
.+..+.|.||+|+|||||++++++
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 455799999999999999999996
No 445
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.53 E-value=0.0079 Score=56.87 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
+.++..+.|.||||+|||||+++++...
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 3468899999999999999999997654
No 446
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.52 E-value=0.021 Score=49.41 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=21.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.-...-.|++.|++|+|||+|++.+...
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3345667999999999999999999854
No 447
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.50 E-value=0.021 Score=47.35 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 448
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.49 E-value=0.021 Score=46.98 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.+++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999855
No 449
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.49 E-value=0.023 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+..|.|.|++|+||||+++.++..+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999997764
No 450
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.43 E-value=0.024 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999854
No 451
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.42 E-value=0.018 Score=54.12 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.+..+.|.||||+|||||+++++...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 46789999999999999999998654
No 452
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.39 E-value=0.02 Score=57.81 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=25.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHSVY 204 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~~~ 204 (390)
.+..+.|.|.+||||||+++++|..++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999874
No 453
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.39 E-value=0.029 Score=47.10 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.....|++.|++|+|||+|++.+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35667999999999999999999753
No 454
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.38 E-value=0.025 Score=46.78 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999854
No 455
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.37 E-value=0.023 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
..++|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 456
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.34 E-value=0.032 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.....+++.|++|+|||+|++.+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34577999999999999999999854
No 457
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.33 E-value=0.025 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.+++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 458
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.30 E-value=0.025 Score=47.37 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999754
No 459
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.29 E-value=0.026 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~~ 202 (390)
-.+++.|++|+|||+|++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 460
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.27 E-value=0.052 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.++|.|.||+|||+|++++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999854
No 461
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.25 E-value=0.027 Score=54.11 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.+..+.|.|+||+|||||+++++...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46779999999999999999998653
No 462
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.24 E-value=0.027 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 463
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.20 E-value=0.027 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999855
No 464
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.18 E-value=0.027 Score=55.01 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
..+..+.|.|+||+|||||++++...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45677999999999999999999855
No 465
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.18 E-value=0.13 Score=62.21 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=53.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHH-HhcCCeEEEEcCCC
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA-RLAAPAILFIDEIE 247 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A-~~~~p~il~lDEid 247 (390)
.|+++.||+|..||||++|++..|.-+++.++.+......+ ..+-...++.++..| ...+|.+.+|+|-.
T Consensus 1644 qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1644 QPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK--SSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp STTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred cCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC--HHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 56788999999999999999999999999988876544322 233456788888888 45678888888875
No 466
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.17 E-value=0.034 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
..-.+++.|++|+|||+|++.+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999754
No 467
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.17 E-value=0.027 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999853
No 468
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.16 E-value=0.028 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
..-.+++.|++|+|||+|++.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 469
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.14 E-value=0.028 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
No 470
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.13 E-value=0.028 Score=46.76 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q psy11689 180 GILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~ 200 (390)
.+++.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 471
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.13 E-value=0.17 Score=47.42 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
+++..|.+.|.||+|||||++++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34567999999999999999999854
No 472
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.08 E-value=0.026 Score=46.81 Aligned_cols=21 Identities=38% Similarity=0.771 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q psy11689 180 GILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~ 200 (390)
.+++.|++|+|||+|++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999963
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.08 E-value=0.03 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+...+|+||+|+|||+++.||.-.++
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45689999999999999999976554
No 474
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.02 E-value=0.031 Score=46.28 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999854
No 475
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.02 E-value=0.024 Score=54.69 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
.+.++ ...|+||+|+|||+++.+++..+
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 34455 78999999999999999998543
No 476
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.02 E-value=0.03 Score=50.89 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
+.-.|+|.|.||+|||+|++++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4457999999999999999999854
No 477
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.01 E-value=0.033 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999853
No 478
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.97 E-value=0.033 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.-.+++.|++|+|||+|++.+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999854
No 479
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.95 E-value=0.033 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.-.|++.|++|+|||+|++.+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999854
No 480
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.94 E-value=0.035 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.+++.|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
No 481
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.93 E-value=0.041 Score=47.45 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=23.8
Q ss_pred hhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689 171 ERLAIPKPKGILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 171 ~~~~~~~~~~vLl~GppGtGKT~La~aia~ 200 (390)
+++--...-.|++.|++|+|||+|++.+..
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 333334567799999999999999999964
No 482
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.91 E-value=0.036 Score=47.73 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
+.-.|++.|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999865
No 483
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.86 E-value=0.037 Score=54.56 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 175 ~~~~~~vLl~GppGtGKT~La~aia~~~~ 203 (390)
+.++...+|+||+|+|||+|+.+++...+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 44578899999999999999999986544
No 484
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.83 E-value=0.036 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999854
No 485
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.81 E-value=0.035 Score=46.64 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
...+++.|++|+|||+|++++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999865
No 486
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.80 E-value=0.033 Score=56.08 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 174 ~~~~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
|+.++.-++|.|+||+|||+|+..+|...
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 68889999999999999999999998553
No 487
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.80 E-value=0.033 Score=46.81 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.-.|++.|++|+|||+|++++...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999743
No 488
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.79 E-value=0.034 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.+++.|++|+|||+|++.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 489
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.79 E-value=0.037 Score=46.34 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.-.+++.|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999855
No 490
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.74 E-value=0.046 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
..-.|++.|++|+|||+|++++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999865
No 491
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.73 E-value=0.037 Score=46.74 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH
Q psy11689 176 PKPKGILLYGPPGCAKTSLVRTLAA 200 (390)
Q Consensus 176 ~~~~~vLl~GppGtGKT~La~aia~ 200 (390)
...-.+++.|++|+|||+|++.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3566799999999999999999873
No 492
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.72 E-value=0.013 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAHSV 203 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~~~ 203 (390)
.+.|.||+|||||||+++|+....
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 457889999999999999997654
No 493
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.70 E-value=0.039 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.|++.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 494
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.69 E-value=0.038 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.+.+++|.|++|+|||+++.++...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5789999999999999999999875
No 495
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.68 E-value=0.04 Score=48.45 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202 (390)
Q Consensus 177 ~~~~vLl~GppGtGKT~La~aia~~~ 202 (390)
....+++.|++|+|||||+..++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999775
No 496
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.67 E-value=0.038 Score=46.63 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.-.|++.|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356999999999999999999854
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.66 E-value=0.035 Score=47.15 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q psy11689 180 GILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 180 ~vLl~GppGtGKT~La~aia~~ 201 (390)
.+++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999854
No 498
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.65 E-value=0.2 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
..|+|.|.||+|||+|++.+...
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999999743
No 499
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.63 E-value=0.039 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q psy11689 178 PKGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 178 ~~~vLl~GppGtGKT~La~aia~~ 201 (390)
.-.+++.|++|+|||+|++.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999854
No 500
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.63 E-value=0.039 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q psy11689 179 KGILLYGPPGCAKTSLVRTLAAH 201 (390)
Q Consensus 179 ~~vLl~GppGtGKT~La~aia~~ 201 (390)
-.|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
Done!