RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11689
(390 letters)
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 135 bits (342), Expect = 6e-35
Identities = 36/103 (34%), Positives = 65/103 (63%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL+ V+ +++ V++P ++ +F + + KG+L YGPPGC KT L + +A
Sbjct: 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
++ +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 538 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580
Score = 112 bits (283), Expect = 3e-27
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 135 EGEEEGAFVP--ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKT 192
+ EE V ++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT
Sbjct: 193 DEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 193 SLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ R +A + + ++ S GE+E N+ + F A APAI+FIDE++
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
Score = 34.8 bits (80), Expect = 0.053
Identities = 1/36 (2%), Positives = 11/36 (30%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKG 180
++ + ++++ + + +G
Sbjct: 751 DIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQG 786
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 124 bits (313), Expect = 4e-33
Identities = 36/100 (36%), Positives = 59/100 (59%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
G L+ +R + + P + +F+ L + P G+LL GPPGC KT L + +A S
Sbjct: 13 GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNF 72
Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
++ +L + YVGE+E+ V Q+F RA+ +AP ++F DE+
Sbjct: 73 ISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEV 112
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 123 bits (312), Expect = 7e-33
Identities = 36/100 (36%), Positives = 62/100 (62%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
GGL+ V+ +++ V++P ++ +F + + KG+L YGPPGC KT L + +A
Sbjct: 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77
Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
++ +L + + GE+E NV ++F +AR AAP +LF DE+
Sbjct: 78 ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 117
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 111 bits (279), Expect = 4e-27
Identities = 36/102 (35%), Positives = 59/102 (57%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT + R +A +
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
+ ++ S GE+E N+ + F A APAI+FIDE+
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 104 bits (261), Expect = 1e-25
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
G + +++ V P F L P KG+LL+GPPG KT L R +A
Sbjct: 24 AGQDVAKQALQEMVILPSVRPELFTGLRAP-AKGLLLFGPPGNGKTLLARAVATECSATF 82
Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
L SAA L S YVG+ E+ V LF AR P+I+FIDE+
Sbjct: 83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 102 bits (256), Expect = 7e-25
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
GL+G + +++ V P K+ F+ P GILLYGPPG K+ L + +A +
Sbjct: 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKP-TSGILLYGPPGTGKSYLAKAVATEANSTF 79
Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
+ S++ L S ++GE+E+ V QLF AR P+I+FID++
Sbjct: 80 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 101 bits (254), Expect = 7e-25
Identities = 39/102 (38%), Positives = 59/102 (57%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL+ + + VE P K+ FE++ I PKGILLYGPPG KT L + +A +
Sbjct: 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
+ ++L ++GE V +F A+ AP+I+FIDEI
Sbjct: 78 TFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI 119
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 102 bits (255), Expect = 2e-24
Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
G++ +A +++ V WP F L P PKGILL+GPPG KT + + +A+ S
Sbjct: 87 AGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIASQSGATF 145
Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ SA+ L S +VGE E+ V LF AR PA++FIDEI+
Sbjct: 146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEID 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 100 bits (252), Expect = 3e-24
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
GL+G + +++ V P K+ F P +GILL+GPPG K+ L + +A +
Sbjct: 15 AGLEGAKEALKEAVILPIKFPHLFTGKRTP-WRGILLFGPPGTGKSYLAKAVATEANNST 73
Query: 207 -LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
+ S++ L S ++GE+E+ V LF AR P+I+FIDEI
Sbjct: 74 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI 114
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 101 bits (253), Expect = 5e-24
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
G + +++ V P F L P +G+LL+GPPG KT L + +AA S
Sbjct: 118 AGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATF 176
Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
SAA L S YVGE E+ V LF AR P+I+FID+++
Sbjct: 177 FNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD 217
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 99.3 bits (247), Expect = 4e-23
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
+ GL+G + +++ V P K+ F P +GILL+GPPG K+ L + +A +
Sbjct: 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTP-WRGILLFGPPGTGKSYLAKAVATEANNS 194
Query: 206 V-LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
+ S++ L S ++GE+E+ V LF AR P+I+FIDEI
Sbjct: 195 TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI 236
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 96.4 bits (240), Expect = 2e-22
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
GL+G + +++ V P K+ F+ P GILLYGPPG K+ L + +A +
Sbjct: 54 AGLEGAKEALKEAVILPVKFPHLFKGNRKP-TSGILLYGPPGTGKSYLAKAVATEANSTF 112
Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
+ S++ L S ++GE+E+ V QLF AR P+I+FID++
Sbjct: 113 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 152
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 89.9 bits (223), Expect = 1e-20
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
L G A M+K V K + I P + ++G G K+ +
Sbjct: 6 LDGFYIAPAFMDKLVVHITKNF--LKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGIN 63
Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRA----RLAAPAILFIDEI 246
+ SA +L S GE + + Q + A R LFI+++
Sbjct: 64 PIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDL 108
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 80.9 bits (200), Expect = 1e-17
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
+ E + + +R +LL GPP KT+L +A S +
Sbjct: 36 IKWGDPVTRVLDDGELLVQQTKNSDRT---PLVSVLLEGPPHSGKTALAAKIAEESNFPF 92
Query: 207 LAASAAQLYSPYVGEAE-QNVTQLFHRARLAAPAILFIDEIERTYNCEYRE 256
+ + + A+ Q + ++F A + + + +D+IER +Y
Sbjct: 93 IKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL--LDYVP 141
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 61.2 bits (149), Expect = 6e-11
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
+ F++L PKG+L+ GPPG KT L + +A + S + +VG
Sbjct: 32 REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 91
Query: 225 NVTQLFHRARLAAPAILFIDEIE 247
V +F +A+ AAP I+FIDEI+
Sbjct: 92 RVRDMFEQAKKAAPCIIFIDEID 114
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 60.4 bits (147), Expect = 1e-10
Identities = 32/83 (38%), Positives = 42/83 (50%)
Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
K F + PKG+LL GPPG KT L R +A + + AS + +VG
Sbjct: 36 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 95
Query: 225 NVTQLFHRARLAAPAILFIDEIE 247
V LF A+ AP I+FIDEI+
Sbjct: 96 RVRDLFETAKRHAPCIVFIDEID 118
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 60.1 bits (146), Expect = 2e-10
Identities = 32/83 (38%), Positives = 42/83 (50%)
Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
K F + PKG+LL GPPG KT L R +A + + AS + +VG
Sbjct: 60 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 119
Query: 225 NVTQLFHRARLAAPAILFIDEIE 247
V LF A+ AP I+FIDEI+
Sbjct: 120 RVRDLFETAKRHAPCIVFIDEID 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 59.2 bits (144), Expect = 3e-10
Identities = 33/82 (40%), Positives = 41/82 (50%)
Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
K F +L PKG LL GPPGC KT L + +A + LA + A+ G
Sbjct: 26 KSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAA 85
Query: 225 NVTQLFHRARLAAPAILFIDEI 246
V LF AR AP I++IDEI
Sbjct: 86 RVRSLFKEARARAPCIVYIDEI 107
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 58.8 bits (143), Expect = 5e-10
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
KY + L PKG+LL GPPG KT L + +A + + + +VG
Sbjct: 31 KYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGAS 90
Query: 225 NVTQLFHRARLAAPAILFIDEI 246
V LF A+ AP+I+FIDEI
Sbjct: 91 RVRDLFETAKKQAPSIIFIDEI 112
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 50.9 bits (121), Expect = 3e-07
Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 22/152 (14%)
Query: 129 EERRDWEGEEEGAFVPE--------LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKG 180
D E EG+ E L GLK V+ + +T R ++L +
Sbjct: 8 PTSIDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAAL-LLVERARQKLGLAHETP 66
Query: 181 ---ILLYGPPGCAKTSLVRTLAAH-------SVYRVLAASAAQLYSPYVGEAEQNVTQLF 230
+ G PG KT++ +A +++ + L Y+G ++
Sbjct: 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL 126
Query: 231 HRARLAAPAILFIDEIERTYNCEYREQTADNA 262
RA +LFIDE Y + A
Sbjct: 127 KRAM---GGVLFIDEAYYLYRPDNERDYGQEA 155
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 51.4 bits (124), Expect = 3e-07
Identities = 32/82 (39%), Positives = 41/82 (50%)
Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
K F + PKG+LL GPPG KT L R +A + + AS + +VG
Sbjct: 51 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 110
Query: 225 NVTQLFHRARLAAPAILFIDEI 246
V LF A+ AP I+FIDEI
Sbjct: 111 RVRDLFETAKRHAPCIVFIDEI 132
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 50.3 bits (121), Expect = 6e-07
Identities = 33/82 (40%), Positives = 42/82 (51%)
Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
K +F R+ PKGILL GPPG KT L R +A + S + +VG
Sbjct: 36 KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAA 95
Query: 225 NVTQLFHRARLAAPAILFIDEI 246
V LF +A+ AP I+FIDEI
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDEI 117
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 48.4 bits (115), Expect = 2e-06
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 19/190 (10%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAH--SVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA-- 233
+ +LL GPPG KT+L +A S +++YS + + E + + F RA
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIG 121
Query: 234 -RLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKR 292
R+ ++ E+ + P G K +
Sbjct: 122 LRIKETKEVYEGEVTEL-----------TPCETENPMGGYGKTISHVIIGLKTAKGTKQL 170
Query: 293 EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQR 352
+ ++ K R+ + Y E + R R + E+ + P+
Sbjct: 171 KLDPSIFESLQKERVEAGDVIYIEAN--SGAVKRQGRCDTYATEFDLEAEEYVPLPKGDV 228
Query: 353 TKREYREQTA 362
K++ Q
Sbjct: 229 HKKKEIIQDV 238
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 45/156 (28%)
Query: 95 GGEEGIELREGGQRNGGEGGIGLNERVQRI-GEGREERRD--WEGEEEG----AFV-PEL 146
GGE+G +RE E + + ++I E E + E+ F P
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-- 1734
Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--Y 204
AL +E A FE L K KG++ P A HS+ Y
Sbjct: 1735 -------ALT--LME----KA-AFEDL---KSKGLI---PADAT-------FAGHSLGEY 1767
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
LA+ A + E V +F+R A+
Sbjct: 1768 AALASLADVM------SIESLVEVVFYRGMTMQVAV 1797
Score = 35.8 bits (82), Expect = 0.027
Identities = 36/220 (16%), Positives = 60/220 (27%), Gaps = 80/220 (36%)
Query: 2 PVDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVID---LPTAPQ 58
P L + T+ R A S L R S + LP A
Sbjct: 383 PQSLYGLNLTL-------RKAKAPSGLDQSRIPFSERKL---------KFSNRFLPVA-- 424
Query: 59 GRETELPF-TKLNEEVE--LSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGI 115
PF + L +++++ + +++Q I
Sbjct: 425 -----SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-------IP-------------- 458
Query: 116 GLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAI 175
V +G + R G+ + V ++ V+W E
Sbjct: 459 -----VYDTFDGSDLR-----VLSGSISERI-----VDCIIRLPVKW--------ETTTQ 495
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAHSV----YRVLAASA 211
K IL +GP G S + L + RV+ A
Sbjct: 496 FKATHILDFGPGG---ASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 30.8 bits (69), Expect = 1.1
Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 59/191 (30%)
Query: 187 PGCAKTSLVRTLAAHSVYRVLAA--SAAQLYSPYVGEAEQNVTQLFH---RARLAAPAIL 241
PG ++ L + HS V A + + + + +T LF R A P
Sbjct: 260 PGELRSYL-KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 242 FIDEIERTYNCEYREQTADNAKKPRIP--RTNGGYREQTADTANKPRIQRTKREYREQTA 299
I E + +N + P + +EQ D + +T
Sbjct: 319 LPPSI--------LEDSLENNEGVPSPMLSISNLTQEQVQD-----YVNKT-----NSHL 360
Query: 300 DTAHKTRISRTN--R-----GY------------REKTADTANKPRIPRTNRGYREYSAQ 340
+ IS N + G + K ++ RIP + R
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-------- 412
Query: 341 NANTANKPRIQ 351
K +
Sbjct: 413 ------KLKFS 417
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 44.5 bits (106), Expect = 4e-05
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
++L+GPPG KT+L +A ++ V SA + V E + + + I
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAV---TSGVKEIREAIERARQNRNAGRRTI 109
Query: 241 LFIDEIER 248
LF+DE+ R
Sbjct: 110 LFVDEVHR 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 7e-05
Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 42/248 (16%)
Query: 30 HVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVELSENVQREEEG---I 86
+ LS + + + D+ P+ +K EE++ + G +
Sbjct: 17 QYKDILSVFEDAFVD--NFDCKDVQDMPKS-----ILSK--EEIDHIIMSKDAVSGTLRL 67
Query: 87 AGENLQRGGGEEGIE--LREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVP 144
L + EE ++ + E + N L + + E+R ++
Sbjct: 68 FWTLLSKQ--EEMVQKFVEEVLRINYK----FLMSPI------KTEQRQPSMMTR-MYIE 114
Query: 145 ELGGLKGVRALMEK-TVEWPFKYAREFERLAIPKP-KGILLYGPPGCAKTSLV-RTLAAH 201
+ L + K V Y + + L +P K +L+ G G KT + ++
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 202 SV-----YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE 256
V +++ + SP + + +L ++ + + + N + R
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRI 227
Query: 257 QTADNAKK 264
+ +
Sbjct: 228 HSIQAELR 235
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 41.6 bits (98), Expect = 1e-04
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 6/88 (6%)
Query: 164 FKYAREF-ERLAIPKPKGILLYGPPGCAKT----SLVRTLAAHSVYRVLAASAAQLYSPY 218
R F + KG+ G PG KT + ++ + R L
Sbjct: 23 LLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF-R 81
Query: 219 VGEAEQNVTQLFHRARLAAPAILFIDEI 246
+ + +L +D++
Sbjct: 82 LKHLMDEGKDTKFLKTVLNSPVLVLDDL 109
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 42.7 bits (100), Expect = 1e-04
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 117 LNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIP 176
L R + + + G + + G+ + L+ K + + + IP
Sbjct: 111 LTNRFNDLLDRMDIMFGSTGSADIEEW--MAGVAWLHCLLPKMDSVVYDFLKCMVY-NIP 167
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
K + L GP KT+L L + L
Sbjct: 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKAL 198
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 42.9 bits (101), Expect = 1e-04
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 152 VRALMEKTVEWPFKYAREFERLAI---PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
V L W F+ + +LYGPPG KT+ +A Y +L
Sbjct: 48 VMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 41.8 bits (98), Expect = 2e-04
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 164 FKYAREF-ERLAIPKPKGILLYGPPGCAKT----SLVRTLAAHSVYRVLAASAAQLYSPY 218
F +F E+ + KG+ LYG G K+ ++ L+
Sbjct: 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI-D 195
Query: 219 VGEAEQNVTQLFHRARLAAPAILFIDEI 246
V A N + + +L +D+I
Sbjct: 196 VKNAISNGSVKEEIDAVKNVPVLILDDI 223
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 39.1 bits (92), Expect = 0.002
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVL-----AASAAQLY-SPYVGEAEQNVTQ-LFHRA 233
ILL GP G KT L TLA R+L A A L + YVGE +N+ Q L +
Sbjct: 54 ILLIGPTGSGKTLLAETLA-----RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 108
Query: 234 ----RLAAPAILFIDEI 246
+ A I++ID+I
Sbjct: 109 DYDVQKAQRGIVYIDQI 125
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 16/77 (20%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVL-----AASAAQLY-SPYVGEAEQNVTQ-LFHRA 233
ILL GP G KT + +TLA + L + A L + YVGE +N+ L +
Sbjct: 75 ILLIGPTGSGKTLMAQTLA-----KHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 129
Query: 234 ----RLAAPAILFIDEI 246
+ A I+FIDEI
Sbjct: 130 DWNVQKAQKGIVFIDEI 146
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 37.7 bits (88), Expect = 0.003
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 156 MEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKT----SLVRTLAAHSVYRVLAASA 211
K + + ++ E+E K KG+ L+G G KT ++ LA + L
Sbjct: 34 RIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELAKRN-VSSLIVYV 90
Query: 212 AQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
+L+ + + Q+ T + +L +D++
Sbjct: 91 PELFR-ELKHSLQDQTMNEKLDYIKKVPVLMLDDL 124
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 37.4 bits (87), Expect = 0.006
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
+ L GPPG AK+ + R L
Sbjct: 44 VFLLGPPGIAKSLIARRLKFA 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 37.3 bits (87), Expect = 0.007
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAA-HSVYRVLAASAAQLYSPYVGEAEQNV----TQLFHR 232
PK IL+ GP G KT + R LA + + + YVG+ ++ T
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 233 ARLAAPA--ILFIDEI 246
A A I+FIDEI
Sbjct: 110 AIDAVEQNGIVFIDEI 125
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 33.7 bits (78), Expect = 0.057
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 14/88 (15%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV-GEAEQNVTQLFHRA-RLAAP 238
+YGP KT+L S +V YV E + +L A
Sbjct: 23 TQVYGPYASGKTTLALQTGLLSGKKVA----------YVDTEGGFSPERLVQMAETRGLN 72
Query: 239 AILFIDEIE--RTYNCEYREQTADNAKK 264
+ + + + + + KK
Sbjct: 73 PEEALSRFILFTPSDFKEQRRVIGSLKK 100
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 33.7 bits (78), Expect = 0.073
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
+L GPPG KT+ LA
Sbjct: 41 LLFSGPPGTGKTATAIALA 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 33.8 bits (78), Expect = 0.082
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
+L GPPG KT+ LA
Sbjct: 41 LLFSGPPGTGKTATAIALA 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 33.7 bits (78), Expect = 0.085
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
ILL G PG AKT V TLA
Sbjct: 49 ILLEGVPGLAKTLSVNTLA 67
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 33.5 bits (77), Expect = 0.11
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
+L GPPG KT+ LA
Sbjct: 49 LLFAGPPGVGKTTAALALA 67
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 33.1 bits (76), Expect = 0.14
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 167 AREFERLAIPKPKGILLYGPPGCAKTSLVRTLA 199
A E + A + + +LL G PG K+ L + +A
Sbjct: 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 32.9 bits (76), Expect = 0.16
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 171 ERLAI----PKPKG-IL-LYGPPGCAKTSLVRTLA 199
E LA+ KG IL L GPPG KTSL +++A
Sbjct: 95 EYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIA 129
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 32.8 bits (75), Expect = 0.16
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 174 AIPKPKGILLYGPPGCAKTSLVRTLAA 200
P G+L++G G K++ VR LAA
Sbjct: 41 VDPGIGGVLVFGDRGTGKSTAVRALAA 67
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 31.7 bits (71), Expect = 0.39
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 14/87 (16%)
Query: 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA-SAAQLYSPYVGEAEQNVTQLFHR 232
+ K +L+ G PGC KT + + +L A A +
Sbjct: 157 HVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDN 216
Query: 233 ARLAAPAI-------------LFIDEI 246
R + LFIDE
Sbjct: 217 VRTVDSFLMNYGKGARCQFKRLFIDEG 243
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 31.0 bits (70), Expect = 0.52
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
IPK + GPP K+ L +L VL
Sbjct: 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 31.3 bits (70), Expect = 0.52
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 145 ELGGLKGVRALMEKTVEWPFKY------AREFERLAIPKPKGILLYGPPGCAKTSLVRTL 198
+ KY E R++ + +++ G KTSL RTL
Sbjct: 99 LWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTL 158
Query: 199 AAHSV 203
++++
Sbjct: 159 CSYAL 163
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.8 bits (69), Expect = 0.56
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH 201
++ G G KT+L +
Sbjct: 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A
{Mycobacterium tuberculosis}
Length = 384
Score = 31.1 bits (69), Expect = 0.57
Identities = 26/210 (12%), Positives = 58/210 (27%), Gaps = 11/210 (5%)
Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAE- 223
+ + E + + + I + G T+L R L A ++ L A+ P
Sbjct: 78 AWKQYPEHVDVAIKRPIFVTGLVRTGTTALHRLLGADPAHQGLHMWLAEYPQPRPPRETW 137
Query: 224 ------QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNG--GYR 275
+ + F + P + + E + + Y
Sbjct: 138 ESNPLYRQLDADFTQHHAENPGYTGLHFMAAYELEECWQLLRQSLHSVSYEALAHVPSYA 197
Query: 276 EQTADTANKPRIQRTKREYREQTADTAHKTRISRT--NRGYREKTADTANKPRIPRTNRG 333
+ + P R +R + + A K + + + + T + +T+R
Sbjct: 198 DWLSRQDWTPSYCRHRRNLQLIGLNDAEKRWVLKNPSHLFALDALMATYPDALVVQTHRP 257
Query: 334 YREYSAQNANTANKPRIQRTKREYREQTAD 363
A + A + + Q
Sbjct: 258 VETIMASMCSLAQHTTEGWSTKFVGAQIGA 287
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.0 bits (70), Expect = 0.78
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201
+P + +YG GC K+ L
Sbjct: 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.0 bits (70), Expect = 0.79
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 11/47 (23%)
Query: 180 GILLYGPPGCAKTSLVRTLAA--------HSVYRVL---AASAAQLY 215
++L G GC KT+ +T+ +V V+ + LY
Sbjct: 925 ALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLY 971
Score = 27.9 bits (62), Expect = 7.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 172 RLAIPKPKGILLYGPPGCAKTSLVR-TLAAHSVYRVL 207
+ +GI+L GPPG KT ++ L S+Y V+
Sbjct: 1261 YDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVV 1297
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 30.5 bits (68), Expect = 0.97
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 8/41 (19%)
Query: 169 EFERLAI--------PKPKGILLYGPPGCAKTSLVRTLAAH 201
AI L G G KT + + +
Sbjct: 28 ILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE 68
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.6 bits (69), Expect = 1.1
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 179 KGILLYGPPGCAKTSLVR-TLAAHSVYRVL-----AASAAQLYSPYVGEAEQNVTQLFHR 232
+ ++L GPPG KT + TL A + V+ +A+ +L +
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGE 1364
Query: 233 ARLAAPA-----ILFIDEIERTYNCEYREQTA 259
L ++F DEI +Y Q
Sbjct: 1365 TVLRPTQLGKWLVVFCDEINLPSTDKYGTQRV 1396
Score = 29.9 bits (67), Expect = 1.8
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 11/47 (23%)
Query: 180 GILLYGPPGCAKTSLVRTLAA--------HSVYRVL---AASAAQLY 215
G+++ GP G KT+ S V+ A + QL+
Sbjct: 908 GVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLF 954
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 29.4 bits (66), Expect = 1.2
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAASAAQLYSPYVGEAEQNVT 227
K IL G PG K++ R A + + + A + Y + E VT
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 228 QL-FHRARLA 236
+ F A+
Sbjct: 62 GMQFDTAKSI 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 30.1 bits (67), Expect = 1.3
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH 201
L G PG KT +R L
Sbjct: 43 HYPRATLLGRPGTGKTVTLRKLWEL 67
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.3
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 68 KLNEEVELSENVQ--REEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQRIG 125
+L +E E+++ REE+ + L E RE +++ L E QR
Sbjct: 79 RLTQE---PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD-------LEEWNQRQS 128
Query: 126 EGREERRDWEGEEEGAFVPE 145
E E+ + + AF +
Sbjct: 129 EQVEKNKINNRIADKAFYQQ 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 30.0 bits (67), Expect = 1.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTL 198
KP I +YG G KT++V+ +
Sbjct: 43 EKPNNIFIYGLTGTGKTAVVKFV 65
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 29.2 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVL 207
ILL G PG KT+L + LA+ S + +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYI 40
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 29.5 bits (66), Expect = 1.5
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
+ P I++ G P KT+L + LA +L
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLL 34
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.5
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 21/47 (44%)
Query: 28 LRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVE 74
L+ +++SL Y D +AP L + +E
Sbjct: 22 LKKLQASLKLYAD-----------D--SAPA-----L---AIKATME 47
Score = 28.4 bits (62), Expect = 2.6
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 223 EQNVTQLFHRARL----AAPAILFID-EIE 247
+Q + +L +L +APA L I +E
Sbjct: 19 KQALKKLQASLKLYADDSAPA-LAIKATME 47
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 29.3 bits (65), Expect = 1.6
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 11/69 (15%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAHS-----------VYRVLAASAAQLYSPYVGEAEQ 224
+LL G PG K+++ LA ++ + + P + +
Sbjct: 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR 66
Query: 225 NVTQLFHRA 233
+ Q+
Sbjct: 67 MIMQIAADV 75
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.0 bits (64), Expect = 1.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAHS 202
+ I+L G K+ +VR L +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 29.0 bits (65), Expect = 1.9
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
PK ++ GP K+ + V+
Sbjct: 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAHS 202
PK IL+ G PG KTS+ +AA
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAEL 34
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 29.3 bits (65), Expect = 2.0
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAASAAQLYSPYVGEAEQNVT 227
K IL G PG K++ R A + + + A + Y + E VT
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 228 Q-LFHRARLA 236
F A+
Sbjct: 62 GMQFDTAKSI 71
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.5 bits (66), Expect = 2.1
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 178 PKG--ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRAR 234
K IL G G KT L + V A + Y E++ QL A
Sbjct: 279 FKDSIILATGATGTGKT----LLVSRFVENACANKERAILFAY----EESRAQLLRNAY 329
Score = 28.4 bits (63), Expect = 4.8
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRAR 234
+P + L+ G G KT + +Y + +V E+ + AR
Sbjct: 36 LPIGRSTLVSGTSGTGKT----LFSIQFLYNGIIEFDEPGV--FVT-FEETPQDIIKNAR 88
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 29.1 bits (65), Expect = 2.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
+LLYGP G K + L
Sbjct: 39 LLLYGPNGTGKKTRCMALL 57
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.7 bits (63), Expect = 2.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201
+P ILL G G KT++ R
Sbjct: 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.9 bits (64), Expect = 2.8
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
L P G K+ L LAA
Sbjct: 33 GALVSPGGAGKSMLALQLAAQ 53
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.9 bits (64), Expect = 2.8
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 168 REFERL--AIPKPKGILLYGPPGCAKTSLVRTLA 199
E +L ++ LL G K+SL+R
Sbjct: 19 EESRKLEESLENYPLTLLLGIRRVGKSSLLRAFL 52
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 28.7 bits (64), Expect = 3.1
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP--YVGEAEQNVTQLFHR 232
P+ +LL G G KT T AA + A + P +V E+ L
Sbjct: 27 FPEGTTVLLTGGTGTGKT----TFAAQ----FIYKGAEEYGEPGVFVT-LEERARDLRRE 77
Query: 233 AR 234
Sbjct: 78 MA 79
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 28.7 bits (65), Expect = 3.3
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL+GPPG KT+L AH + L + P + + L + L I
Sbjct: 41 LLLFGPPGLGKTTL-----AHVIAHELGVNLRVTSGPAIEKPGDLAAILAN--SLEEGDI 93
Query: 241 LFIDEIER 248
LFIDEI R
Sbjct: 94 LFIDEIHR 101
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 28.8 bits (65), Expect = 3.6
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 182 LLYGPPGCAKTSLVRTLA----AHSVYRVLAASAAQLYS----------PYVGEAEQNVT 227
LL G G KT++ LA V V+A +YS Y G+ E+
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD--CTIYSLDIGSLLAGTKYRGDFEKRFK 268
Query: 228 QLFHRARLAAPAILFIDEI 246
L + +ILFIDEI
Sbjct: 269 ALLKQLEQDTNSILFIDEI 287
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 28.7 bits (65), Expect = 3.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
+LL GPPG KT+L +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.5 bits (63), Expect = 4.1
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 168 REFERLAIPKPKGILLYGPPGCAKTSLVRTLA 199
+E E+L + L+ G K+S+++
Sbjct: 20 KEIEKLKGLRAPITLVLGLRRTGKSSIIKIGI 51
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 28.3 bits (64), Expect = 4.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
IL GP G KT+L ++
Sbjct: 58 ILFSGPAGLGKTTLANIIS 76
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 28.0 bits (62), Expect = 5.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAA 200
K I L+GP KT++ +A
Sbjct: 101 FGKRNTIWLFGPATTGKTNIAEAIAH 126
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
2zkq_e 1s1h_E
Length = 274
Score = 27.9 bits (62), Expect = 5.9
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 103 REGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVE 161
GG+R G G G R R G R + EE+ V +LG L V+ +E
Sbjct: 7 ERGGERGGFGRGFGRGGRGDRGGRRGGRRGPRQEEEKWVPVTKLGRL--VKEGRFSKIE 63
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown
function; HET: PLM; 2.60A {Mycobacterium avium}
Length = 414
Score = 27.9 bits (61), Expect = 6.3
Identities = 12/76 (15%), Positives = 17/76 (22%)
Query: 166 YAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQN 225
E L P + +++ G P T + L R L P
Sbjct: 94 IQDHPEVLDAPVERPLIVLGMPRTGTTVISYLLDQDPARRSLLHWQCVHPIPPASTETLR 153
Query: 226 VTQLFHRARLAAPAIL 241
IL
Sbjct: 154 TDPRCLALLDEQRKIL 169
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 27.8 bits (62), Expect = 6.3
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 180 GILLYGPPGCAKTSLVRTLAA 200
+L+ PG +L+ L+
Sbjct: 26 ALLIQALPGMGDDALIYALSR 46
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 27.4 bits (60), Expect = 6.4
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
+ +++ G G KT++ +A +
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 28.0 bits (62), Expect = 6.4
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 182 LLYGPPGCAKT----SLVRTLAAHSVYRVLAAS----AAQLYSPYVGEAEQNVTQLFHRA 233
L+ GPPG KT ++V L+ R+L + A + + + V +L ++
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKS 438
Query: 234 RLAA-PAILFIDEIERTYNCEYREQTADNAKKPRI 267
R ++ + E K +
Sbjct: 439 REDVESSVSNLALHNLVGRGAKGELKNLLKLKDEV 473
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 28.0 bits (61), Expect = 6.5
Identities = 10/68 (14%), Positives = 17/68 (25%), Gaps = 15/68 (22%)
Query: 168 REFERLAI----------PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP 217
+ + I + K + K LV V L S+A+ P
Sbjct: 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVN-----DVMDELITSSARKELP 79
Query: 218 YVGEAEQN 225
+
Sbjct: 80 IFDYIHID 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 6.7
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFH 231
I++ G PG KT+LV+ + L A ++ V + E F
Sbjct: 3 IIITGEPGVGKTTLVKKIV-----ERLGKRAIGFWTEEVRDPETKKRTGFR 48
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 27.3 bits (61), Expect = 8.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 178 PKGILLYGPPGCAKTSLVRTLA 199
PK IL+ GP G KT + R LA
Sbjct: 50 PKNILMIGPTGVGKTEIARRLA 71
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 27.3 bits (60), Expect = 8.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH 201
K + + GP G T+L + +
Sbjct: 44 KKHHVTINGPAGTGATTLTKFIIEA 68
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 27.3 bits (60), Expect = 9.4
Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 23/155 (14%)
Query: 67 TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIE-LREGGQRNGGEGGIGLNERVQRIG 125
T L + +E+ E I+ + + + R G +
Sbjct: 28 TYLEGKNIFTED---HSELISKMSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLA 84
Query: 126 EGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEW------PFKYAREFERLAI---- 175
+ E+ D+ E P + + R ++++ + Y RE+ +
Sbjct: 85 DFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKL 144
Query: 176 -----PKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
+ L+G G K+ +A+ ++ +
Sbjct: 145 DEMCDLDSFFLFLHGRAGSGKS----VIASQALSK 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,732,797
Number of extensions: 346460
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 663
Number of HSP's successfully gapped: 123
Length of query: 390
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 295
Effective length of database: 4,049,298
Effective search space: 1194542910
Effective search space used: 1194542910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.6 bits)