RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11689
(390 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 105 bits (263), Expect = 8e-27
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
+ G + + + VE+ + F++L PKG+L+ GPPG KT L + +A +
Sbjct: 14 VAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72
Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
S + +VG V +F +A+ AAP I+FIDEI+
Sbjct: 73 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEID 114
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 103 bits (258), Expect = 3e-26
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++ G + + +++ VE+ K F + PKG+LL GPPG KT L R +A +
Sbjct: 10 DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 68
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ AS + +VG V LF A+ AP I+FIDEI+
Sbjct: 69 PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 111
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 90.6 bits (224), Expect = 2e-21
Identities = 36/103 (34%), Positives = 65/103 (63%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GGL+ V+ +++ V++P ++ +F + + KG+L YGPPGC KT L + +A
Sbjct: 8 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 67
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
++ +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 68 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 110
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 82.4 bits (203), Expect = 4e-18
Identities = 43/281 (15%), Positives = 74/281 (26%), Gaps = 34/281 (12%)
Query: 110 GGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRA--LMEKTVEWPFKYA 167
I ++ QRI +E+ E E G +K L++ T E
Sbjct: 52 ESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSP 111
Query: 168 REFERLAIPKPKGILL-YGPPGCAKTSLVRTLAAHSVYRV--LAASAAQLYSPYVGEAEQ 224
E G+++ G KT LV L + + S Y +
Sbjct: 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNV 171
Query: 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTA----- 279
V + ++ ID + N T G + A
Sbjct: 172 FVDDIARAML--QHRVIVIDSL-------------KNVIGAAGGNTTSGGISRGAFDLLS 216
Query: 280 --DTANKPR----IQRTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRI-PRTNR 332
R I + K SR+N + D + ++ RT
Sbjct: 217 DIGAMAASRGCVVIASLNPTSNDDKIVELVK-EASRSNSTSLVISTDVDGEWQVLTRTGE 275
Query: 333 GYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRI 373
G + + + T ++ A+ IQ +
Sbjct: 276 GLQRLTHTLQTSYG-EHSVLTIHTSKQSGGKQASGKAIQTV 315
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 79.3 bits (194), Expect = 2e-17
Identities = 36/102 (35%), Positives = 59/102 (57%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
++GG + A +++ VE P ++ F+ + + P+GILLYGPPG KT + R +A +
Sbjct: 5 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 64
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
+ ++ S GE+E N+ + F A APAI+FIDE+
Sbjct: 65 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 106
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 66.2 bits (161), Expect = 1e-12
Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 118 NERVQRIGEGREERRDWEGEEEGAFVPE--LGGLKGVRALMEKTVEWPFKYAREFERLAI 175
+ + +R D G+ E + G+ + L+ K + + + I
Sbjct: 93 EQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVY-NI 151
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY-VGEAEQNVTQLFHRAR 234
PK + L GP KT+L L + L + + +G A +F +
Sbjct: 152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVK 211
Query: 235 LAA------PAILFIDEI 246
P+ I+ +
Sbjct: 212 GTGGESRDLPSGQGINNL 229
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 50.7 bits (120), Expect = 9e-08
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 157 EKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA---AQ 213
E + + + + A+ P LL G PG KTSL + + V+ Q
Sbjct: 12 ENRLNDNLEELIQG-KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70
Query: 214 LYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
+ + + + + +
Sbjct: 71 QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISR 104
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 49.9 bits (118), Expect = 1e-07
Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
+ G+ + + ++ ++ + +LL GPP KT+L +A S +
Sbjct: 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67
Query: 206 VLAASAAQLYSPYVGEAE-QNVTQLFHRARLAAPAILFIDEIER 248
+ + + A+ Q + ++F A + + + +D+IER
Sbjct: 68 FIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 111
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 49.1 bits (116), Expect = 4e-07
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 152 VRALMEKTVEWPFKYAREFERLAIPK-PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210
RA+ + ++ + E L PK IL+ GP G KT + R LA + +
Sbjct: 23 KRAVAI-ALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81
Query: 211 AAQLY--SPYVGEAEQNVTQLFHRA-----RLAAPAILFIDEIER 248
A + E + + L A + I+FIDEI++
Sbjct: 82 ATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 126
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 39.9 bits (92), Expect = 2e-04
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 163 PFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA 222
+ E + + +LL+GPPG KT+L +A + S + P A
Sbjct: 20 KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAA 79
Query: 223 EQNVTQLFHRARLAAPAILFIDEIER 248
L ILFIDEI R
Sbjct: 80 -------ILANSLEEGDILFIDEIHR 98
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 40.2 bits (92), Expect = 3e-04
Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 4/79 (5%)
Query: 178 PKGILLYGPPGCAKTSLVRT----LAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA 233
L G PG KT +R + R + + + E +
Sbjct: 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP 102
Query: 234 RLAAPAILFIDEIERTYNC 252
R F+ +
Sbjct: 103 RRGLSRDEFLALLVEHLRE 121
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 38.6 bits (88), Expect = 6e-04
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 145 ELGGLKG-VRALMEKTVEWPFKYAREFERLAI---PKPKGILLYGPPGCAKTSLVRTLAA 200
++ G KG V L W F+ + +LYGPPG KT+ +A
Sbjct: 15 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 74
Query: 201 HSVY 204
Y
Sbjct: 75 ELGY 78
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 39.0 bits (90), Expect = 8e-04
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 7/121 (5%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLA 236
PK IL+ GP G KT + R LA + + A + VG + V + +
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF--TEVGYVGKEVDSIIRDLTDS 105
Query: 237 APAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYRE 296
A ++ EI + R + D A++ + + Q + N T++ +R+
Sbjct: 106 AMKLVRQQEIA-----KNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRK 160
Query: 297 Q 297
+
Sbjct: 161 K 161
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 37.6 bits (86), Expect = 0.002
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLAA 200
P G+L++G G K++ VR LAA
Sbjct: 23 AVDPGIGGVLVFGDRGTGKSTAVRALAA 50
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 35.5 bits (80), Expect = 0.007
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 168 REFERLAIPKPKGILLYGPPGCAKTSLVRTLA 199
+E E+L + L+ G K+S+++
Sbjct: 19 KEIEKLKGLRAPITLVLGLRRTGKSSIIKIGI 50
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 34.3 bits (77), Expect = 0.015
Identities = 11/87 (12%), Positives = 24/87 (27%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAP 238
K + + G K+ LV LAA + +G EQ + +
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 67
Query: 239 AILFIDEIERTYNCEYREQTADNAKKP 265
+ ++ + + +
Sbjct: 68 QRYIDYAVRHSHKIAFIDTDFITTQAF 94
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 33.8 bits (76), Expect = 0.024
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 163 PFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201
A E ++ +LL GPPG KT+L +A+
Sbjct: 20 KLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 58
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 33.5 bits (75), Expect = 0.025
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAHSVYR 205
+L+ PG +L+ L+ + + +
Sbjct: 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 33.4 bits (75), Expect = 0.026
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201
KP + + G PG K + +
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRD 29
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 33.1 bits (74), Expect = 0.037
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 6/91 (6%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAH-----SVYRVLAASAAQLYSPYVGEAEQNVTQLFHR- 232
+ + L GPPG KT+L+ + + +G ++
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 233 ARLAAPAILFIDEIERTYNCEYREQTADNAK 263
+R+ E A
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.5 bits (73), Expect = 0.039
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201
L P P+ ++ G PG K++ ++
Sbjct: 8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVS 37
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 32.7 bits (73), Expect = 0.039
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201
PK IL+ G PG KTS+ +AA
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIAAE 28
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.2 bits (74), Expect = 0.042
Identities = 9/55 (16%), Positives = 14/55 (25%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
I ++G KT + TLA + E +L
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 74
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 32.2 bits (72), Expect = 0.061
Identities = 22/168 (13%), Positives = 41/168 (24%), Gaps = 18/168 (10%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
+LL G PG K+++ LA + + L+ + + P +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG-------------YIKHGRIDPWL 53
Query: 241 LFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQTAD 300
+ R + AK+ +G R P R
Sbjct: 54 PQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRP-----DWLPAFTALARPLHYIVLR 108
Query: 301 TAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKP 348
T I R + +D + + + K
Sbjct: 109 TTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKD 156
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 31.2 bits (70), Expect = 0.100
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Query: 157 EKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS 216
+ + K+A +L K + L G G KT+L R + ++ S
Sbjct: 12 FSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV 71
Query: 217 PYVGEAEQNVTQL-FHRARLAAPA--ILFIDEIERTYNC--EYREQTADNAKKPRI 267
A + + +R + D C E+ E+ + I
Sbjct: 72 EEYNIAGKMIYHFDLYRLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILPEADI 127
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 31.5 bits (70), Expect = 0.10
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAH 201
+ K K I + G PG K + +
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.9 bits (71), Expect = 0.11
Identities = 10/97 (10%), Positives = 24/97 (24%), Gaps = 10/97 (10%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRAR 234
+P + L+ G G KT + E+ + AR
Sbjct: 23 LPIGRSTLVSGTSGTGKTLFSIQFLYN-------GIIEFDEPGVFVTFEETPQDIIKNAR 75
Query: 235 LAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTN 271
+ ++ + + D + + +
Sbjct: 76 SFG---WDLAKLVDEGKLFILDASPDPEGQEVVGGFD 109
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 31.3 bits (69), Expect = 0.12
Identities = 13/161 (8%), Positives = 38/161 (23%), Gaps = 11/161 (6%)
Query: 167 AREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNV 226
+ + + + G KT+L L+ + ++ + V A++
Sbjct: 11 CKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYH 70
Query: 227 TQLFHRARLAAPAI-----------LFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYR 275
T + T E + + + ++
Sbjct: 71 TGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMI 130
Query: 276 EQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGYRE 316
E + R Y + + + + ++
Sbjct: 131 EGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQK 171
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 31.2 bits (70), Expect = 0.14
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201
PK + +L+ G G KT+ + L +
Sbjct: 4 PKGRVVLVVGVNGVGKTTTIAKLGRY 29
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 31.1 bits (69), Expect = 0.15
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAH 201
PK +L GPPG K + LA +
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.8 bits (68), Expect = 0.22
Identities = 10/60 (16%), Positives = 16/60 (26%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRAR 234
+ L+G K+ L TLA + E +L A+
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 90
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.6 bits (69), Expect = 0.24
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLA 199
PK ++ GP K+ +
Sbjct: 50 TPKKNCLVFCGPANTGKSYFGMSFI 74
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 30.2 bits (67), Expect = 0.28
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH 201
P +++ G P K + +
Sbjct: 2 DPLKVMISGAPASGKGTQCELIKTK 26
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.0 bits (66), Expect = 0.30
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
I++ G PG KT+LV+ +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.3 bits (67), Expect = 0.31
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH 201
+ + I + G PG K + L
Sbjct: 2 AFSPDQVSVIFVLGGPGAGKGTQCEKLVKD 31
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 30.4 bits (68), Expect = 0.32
Identities = 28/118 (23%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR------------VLAASAAQLYSPYVG 220
L + LL G G KT++ LA V L + + Y G
Sbjct: 34 LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 93
Query: 221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT---ADNAKKPRIPRTNGGYR 275
+ E+ L + +ILFIDEI A N KP + ++G R
Sbjct: 94 DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIR 149
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 30.0 bits (67), Expect = 0.35
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLA 199
+ IL+ G + L
Sbjct: 14 EGISILINGEDLSYPREVSLELP 36
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 30.1 bits (66), Expect = 0.37
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAH 201
+LLYGP G K + L
Sbjct: 33 LPHLLLYGPNGTGKKTRCMALLES 56
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 29.9 bits (66), Expect = 0.38
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVL 207
ILL G PG KT+L + LA+ S + +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYI 33
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 29.6 bits (65), Expect = 0.53
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
L P G K+ L LAA
Sbjct: 32 GALVSPGGAGKSMLALQLAAQ 52
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 29.2 bits (64), Expect = 0.56
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH 201
+ I+L G K+ +VR L +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSV 26
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 29.8 bits (66), Expect = 0.57
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 12/126 (9%)
Query: 156 MEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH------SVYRVLAA 209
++ T+E+ KY E+ P I GP G K+ + H + A
Sbjct: 5 LDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYA 64
Query: 210 SAAQLYSPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKKP 265
S Y + E + + + F +L P + ++ N + +
Sbjct: 65 SIDDFYLTH--EDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTV 122
Query: 266 RIPRTN 271
+P+ +
Sbjct: 123 VLPKYD 128
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 29.7 bits (65), Expect = 0.58
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 180 GILLYGPPGCAKTSLVRTLA 199
G G KT+L +
Sbjct: 48 IYGSIGRVGIGKTTLAKFTV 67
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 28.9 bits (63), Expect = 0.60
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
+ I L GP G K+++ R LA
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 31
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.7 bits (65), Expect = 0.61
Identities = 11/83 (13%), Positives = 18/83 (21%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRAR 234
I ++G G KT L TLA E ++ A+
Sbjct: 33 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 92
Query: 235 LAAPAILFIDEIERTYNCEYREQ 257
+ +
Sbjct: 93 NRGLDPDEVLKHIYVARAFNSNH 115
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.5 bits (62), Expect = 0.76
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAH 201
K IL G PG K++ R A
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAK 25
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.3 bits (65), Expect = 0.76
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 181 ILLYGPPGCAKTSLVRTLA------------AHSVYRVLAASAAQLYSPYVGEAEQNVTQ 228
+L G PG KT++V LA L + + Y GE E+ +
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 229 LF-HRARLAAPAILFIDEI 246
+ + ILFIDE+
Sbjct: 106 VIQEVVQSQGEVILFIDEL 124
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.1 bits (64), Expect = 0.78
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAH 201
K IL G G KT LV +
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFVEN 49
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.8 bits (63), Expect = 0.79
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221
I++ GP G K++L++ L A + ++ +P GE
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 28.4 bits (62), Expect = 0.97
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASA 211
++L GP K+++VR L + SA
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSA 35
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.9 bits (63), Expect = 1.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH---------SVYRVLAASA 211
I + GP G K +L + +A ++YRVLA +A
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAA 45
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 28.4 bits (62), Expect = 1.0
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAH 201
P + + G PG K + +
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEK 24
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.5 bits (62), Expect = 1.1
Identities = 9/60 (15%), Positives = 13/60 (21%), Gaps = 4/60 (6%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRAR 234
I +G KT L+ A + + T R R
Sbjct: 34 IESMAITEAFGEFRTGKT----QLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR 89
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.5 bits (62), Expect = 1.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
++ GP G K++ + LAA
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQ 25
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 28.6 bits (63), Expect = 1.1
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP--YVGEAEQNVTQLFHRA-- 233
ILL GP G KT + +TLA H + + A L + E +T+L +
Sbjct: 68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 127
Query: 234 --RLAAPAILFIDEIERTYNC-EYREQTADNAKK 264
+ A I+FIDEI++ E R T D + +
Sbjct: 128 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGE 161
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 28.4 bits (62), Expect = 1.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAH 201
+ I + G GC T++ R LA
Sbjct: 3 EPIFMVGARGCGMTTVGRELARA 25
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.5 bits (62), Expect = 1.2
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 175 IPKPKGILLYGPPGCAKTSLVRTLAAH 201
+ G G KT ++ +
Sbjct: 31 LESQSVTEFAGVFGSGKTQIMHQSCVN 57
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 28.6 bits (62), Expect = 1.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 168 REFERLAIPKPKGI-LLYGPPGCAKTSLVRTLA 199
R + +GI L+ G G K+SL+ +
Sbjct: 12 RSHSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.4 bits (62), Expect = 1.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAH 201
K +++ G PG T+ + +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDN 24
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.0 bits (61), Expect = 1.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
++L GPPG K + L
Sbjct: 5 MVLIGPPGAGKGTQAPNLQER 25
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.9 bits (61), Expect = 1.6
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAH 201
K ++L G G + + TL
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITK 26
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 27.6 bits (60), Expect = 1.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAH 201
K I+ G G K++L R LA
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKD 23
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.8 bits (60), Expect = 1.7
Identities = 19/172 (11%), Positives = 40/172 (23%), Gaps = 6/172 (3%)
Query: 168 REFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVT 227
++ +P+ I L G K+S + +L ++ + + +
Sbjct: 16 EQYPEGGLPE---IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELH 72
Query: 228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRI 287
+ A E Y + +I +
Sbjct: 73 FVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY 132
Query: 288 QRTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRIP---RTNRGYRE 336
AD K + + + R+ I T +G E
Sbjct: 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE 184
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.0 bits (61), Expect = 1.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
++L G PG K + + A
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAA 23
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.8 bits (61), Expect = 1.8
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 169 EFERLAIP--KPKGILLYGPPGCAKTSLVRTLAAH 201
+ E IP P I+L G G K + LA
Sbjct: 1 DKEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYF 35
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 27.6 bits (60), Expect = 1.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
+LL GPPG K + LA
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEK 23
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 27.6 bits (60), Expect = 2.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
I+L G P K + + +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEK 23
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.3 bits (59), Expect = 2.1
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH 201
+L G G K+++ +A
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.5 bits (61), Expect = 2.2
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
I GP G K+++ L
Sbjct: 23 FEAQPNSIIAFAGPSGGGKSTIFSLLE 49
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 27.6 bits (60), Expect = 2.2
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSV 203
++ G G KT+L +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLE 25
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.9 bits (62), Expect = 2.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
L IP K + L G G K+++ +
Sbjct: 36 LKIPAGKTVALVGRSGSGKSTIASLIT 62
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 27.6 bits (61), Expect = 2.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
+ I K + +GP G KT+L++T++
Sbjct: 22 MTIEKGNVVNFHGPNGIGKTTLLKTIS 48
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.6 bits (61), Expect = 2.4
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
+ + L GP G K+++ L
Sbjct: 35 FTLRPGEVTALVGPNGSGKSTVAALLQ 61
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 27.4 bits (59), Expect = 2.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
+L YGPPG KTS + L
Sbjct: 36 MLFYGPPGTGKTSTILALTKE 56
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 27.6 bits (61), Expect = 2.7
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
L+I + + I + G G K++L + +
Sbjct: 24 LSIKQGEVIGIVGRSGSGKSTLTKLIQ 50
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 27.3 bits (59), Expect = 2.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH 201
+ + L G G KT++ L +
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEY 42
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 27.1 bits (59), Expect = 3.0
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
+ G PG K ++ + H
Sbjct: 9 AAIMGAPGSGKGTVSSRITKH 29
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.9 bits (58), Expect = 3.0
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
+ G KT+L++ L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPA 25
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.9 bits (58), Expect = 3.2
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAH 201
K ++ G PG K++++ +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEI 24
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 27.2 bits (60), Expect = 3.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
L I K + + + G G KTSL+ +
Sbjct: 57 LNIEKGEMLAITGSTGSGKTSLLMLIL 83
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 27.3 bits (59), Expect = 3.6
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYR 205
I++ G K++ VR A
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTA 62
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 3.8
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAHSV 203
+ +L G KT L L
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQY 25
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.8 bits (58), Expect = 3.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
++L GP G K++L++ L
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQE 23
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.5 bits (57), Expect = 3.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
+L G PG K+++ R LA
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKA 24
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 27.0 bits (60), Expect = 4.0
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 158 KTVEWPFKYAREFERLAIPKPKG--ILLYGPPGCAKTSLVRTLA-----AHSVYRVLAAS 210
+ + L P KG I L+G G KT L+ L AH Y V A
Sbjct: 46 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG- 104
Query: 211 AAQLYSPYVGEAEQNVTQLFH 231
VGE + L+H
Sbjct: 105 --------VGERTREGNDLYH 117
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.9 bits (59), Expect = 4.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH 201
+ P IL+ G G KT+ + LA
Sbjct: 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQ 32
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 26.8 bits (58), Expect = 4.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
I+L G PG K + +
Sbjct: 3 IVLMGLPGAGKGTQADRIVEK 23
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 26.6 bits (57), Expect = 4.6
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 176 PKPKG---ILLYGPPGCAKTSLVRTLAAH 201
P+ I L G K ++ R L
Sbjct: 1 PRATQGFTIFLTGYMNSGKDAIARALQVT 29
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.7 bits (59), Expect = 4.8
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
L+I K + + G G K++L+ +
Sbjct: 39 LSIEKGETVAFVGMSGGGKSTLINLIP 65
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.2 bits (56), Expect = 4.9
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
+L+ G KT++++
Sbjct: 5 LLMLGLDNAGKTTILKKFN 23
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.5 bits (57), Expect = 5.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 181 ILLYGPPGCAKTSLVRTLA 199
ILL G KT+L++ LA
Sbjct: 19 ILLLGLDNAGKTTLLKQLA 37
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 26.5 bits (58), Expect = 5.1
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 173 LAIPKPKGIL-LYGPPGCAKTSLVRTLA 199
+ + L GP G K+ + +A
Sbjct: 18 VDFEMGRDYCVLLGPTGAGKSVFLELIA 45
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 26.7 bits (59), Expect = 5.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
L I + ++L GP GC KT+ +R +A
Sbjct: 27 LTIKDGEFLVLLGPSGCGKTTTLRMIA 53
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 26.5 bits (57), Expect = 5.6
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 178 PKGILLYGPPGCAKTSLVRTLAAH 201
P+ + + G K++ V+ L
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKT 25
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.4 bits (58), Expect = 5.7
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 19/93 (20%)
Query: 171 ERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLF 230
++++ +L+ G G K + R + S + + +LF
Sbjct: 17 KKIS-CAECPVLITGESGVGKEVVARLIHKLSDRSK---EPFVALNVASIPRDIFEAELF 72
Query: 231 HRAR---------------LAAPAILFIDEIER 248
+ LA LF+DEI
Sbjct: 73 GYEKGAFTGAVSSKEGFFELADGGTLFLDEIGE 105
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.1 bits (57), Expect = 6.0
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY 215
G+LL G G K+ L + + + A ++Y
Sbjct: 16 VGVLLTGRSGIGKSECALDLINKN-HLFVGDDAIEIY 51
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 26.1 bits (56), Expect = 6.0
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 9/44 (20%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH---------SVYRVLAASA 211
K I + GP K+++ + +A ++YR A
Sbjct: 2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMA 45
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.2 bits (57), Expect = 6.2
Identities = 22/135 (16%), Positives = 34/135 (25%), Gaps = 15/135 (11%)
Query: 172 RLAIP--KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
+L +P P I++ G G KT+ LA V + A + EQ
Sbjct: 3 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQ----- 57
Query: 230 FHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQR 289
I + A A DTA + ++
Sbjct: 58 --------LKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKK 109
Query: 290 TKREYREQTADTAHK 304
E + K
Sbjct: 110 NLMEELRKVHRVVKK 124
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.2 bits (57), Expect = 6.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
+ I + + GP G KT+ +R +A
Sbjct: 26 INIENGERFGILGPSGAGKTTFMRIIA 52
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 26.2 bits (57), Expect = 6.4
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 172 RLAIPKPKG-ILLYGPPGCAKTSLVRTLAAH 201
RL + K + L G G KT+ LA +
Sbjct: 3 RLPVLKDRNLWFLVGLQGSGKTTTAAKLALY 33
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.1 bits (57), Expect = 6.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
L I + + ++ GP GC K++L+R +A
Sbjct: 21 LDIHEGEFVVFVGPSGCGKSTLLRMIA 47
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.0 bits (57), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
L + + ++L GP GC KT+ +R +A
Sbjct: 24 LEVKDGEFMILLGPSGCGKTTTLRMIA 50
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.0 bits (56), Expect = 7.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 181 ILLYGPPGCAKTSLVRTLAAH 201
++ P G K+SL++ L
Sbjct: 5 YIVSAPSGAGKSSLIQALLKT 25
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.0 bits (56), Expect = 7.7
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 155 LMEKTVEWPFKYAREFERLAIPKPKGIL---LYGPPGCAKTSLVRTLAAH 201
L E R+ +P+ + + G PG K++ + L +
Sbjct: 25 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 74
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.8 bits (56), Expect = 8.2
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLA 199
L + + ++ GP G KT + +A
Sbjct: 21 LKVESGEYFVILGPTGAGKTLFLELIA 47
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 25.8 bits (55), Expect = 9.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 177 KPKGILLYGPPGCAKTSLVRTLAAH 201
+P +L+ G G KT+ + +
Sbjct: 8 QPFTVLIEGNIGSGKTTYLNHFEKY 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,353,626
Number of extensions: 61654
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 112
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.5 bits)