BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1169
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 298 bits (762), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 139/158 (87%), Positives = 146/158 (92%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct: 22 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 81
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE RDV Y+
Sbjct: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 141
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQN
Sbjct: 142 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 297 bits (760), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 139/160 (86%), Positives = 147/160 (91%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQ RFRAVT
Sbjct: 37 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVT 96
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE RDV Y+
Sbjct: 97 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 156
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+
Sbjct: 157 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 104/165 (63%), Positives = 130/165 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G G GKSCLLHQF E KF D HTIGVEFG+R++ V G+ +KLQIWDTAGQERFR+VT
Sbjct: 32 GSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT 91
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
RSYYRGAAGAL+VYDIT R TYN L++WLTD + L +PN V+ L GNK DL+ R+V +
Sbjct: 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFL 151
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN 186
EA +FA+EN+L+F+E SA+TGENVE+AFL+ A+ I I G+L+
Sbjct: 152 EASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 228 bits (580), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 105/165 (63%), Positives = 133/165 (80%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ G GKSCLLHQF E+KF D HTIGVEFG++II V G+ +KLQIWDTAGQERFR+VT
Sbjct: 17 GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
RSYYRGAAGAL+VYDIT R TYN L++WLTD + L + N VI L GNK DL+ R+V +
Sbjct: 77 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL 136
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN 186
EA +FA+EN+L+F+E SA+TGENVE+AF++ A+KI I+ G+L+
Sbjct: 137 EASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 127/155 (81%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ G GKSCLLHQF E+KF D HTIGVEFG++II V G+ +KLQIWDTAGQERFR+VT
Sbjct: 18 GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT 77
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
RSYYRGAAGAL+VYDIT R TYN L++WLTD + L + N VI L GNK DL+ R+V +
Sbjct: 78 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL 137
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
EA +FA+EN+L+F+E SA+TGE+VE+AF++ A+KI
Sbjct: 138 EASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/162 (62%), Positives = 128/162 (79%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL QFT+++F P TIGVEFG R++ + G++IKLQIWDTAGQE FR++T
Sbjct: 28 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT 87
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
RSYYRGAAGAL+VYDITRR T+NHL+SWL D + ++ N VI LIGNK DLE RDV+ +
Sbjct: 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKRE 147
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
E + FA E+ LIF+E SA T NVE+AF+ TAK+IY+ I+ G
Sbjct: 148 EGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/155 (64%), Positives = 126/155 (81%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ G GKSCLLHQF E+KF D HTIGVEFG++II V G+ +KLQIWDTAG ERFR+VT
Sbjct: 15 GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVT 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
RSYYRGAAGAL+VYDIT R TYN L++WLTD + L + N VI L GNK DL+ R+V +
Sbjct: 75 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
EA +FA+EN+L+F+E SA+TGE+VE+AF++ A+KI
Sbjct: 135 EASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 125/157 (79%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL QFT+++F P TIGVEFG R+I + G++IKLQIWDTAGQE FR++T
Sbjct: 17 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
RSYYRGAAGAL+VYDITRR T+NHL++WL D + +N N VI LIGNK DLE R+V+ +
Sbjct: 77 RSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKE 136
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
E + FA E+ LIF+E SA T NVE+AF+ TAK+IY+
Sbjct: 137 EGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 113/159 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT+ +F D TIGVEF TR +E+ G++IK QIWDTAGQER+RA+T
Sbjct: 20 GDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT 79
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI++ S+Y + + WL++ + + N + LIGNK DL R V +
Sbjct: 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTE 139
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
E+K FA+EN L+F E SA+ ENV++AF E IYQ +
Sbjct: 140 ESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 111/164 (67%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAGQER+R +T
Sbjct: 12 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI + TY ++ WL + ++ + N VI L+GNK DL R V D
Sbjct: 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
EA+ FAE+N+L F+E SA+ NVE+AF +IY+ + ++
Sbjct: 132 EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 107/157 (68%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAGQER+RA+T
Sbjct: 27 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAIT 86
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI + TY ++ WL + ++ + N VI L+GNK DL R V D
Sbjct: 87 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 146
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
EA+ FAE+N L F+E SA+ NVE AF +IY+
Sbjct: 147 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 109/159 (68%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT +F + TIGVEF TR IEV +KIK QIWDTAG ER+RA+T
Sbjct: 17 GDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAIT 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI++ S+Y + + WLT+ + + N + LIGNK DL R V D
Sbjct: 77 SAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTD 136
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
EAK FA EN ++F E SA+ +NV++AF E I+Q +
Sbjct: 137 EAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMV 175
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 106/156 (67%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAGQER+RA+T
Sbjct: 36 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAIT 95
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI + TY ++ WL + ++ + N VI L+GNK DL R V D
Sbjct: 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 155
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
EA+ FAE+N L F+E SA+ NVE AF +IY
Sbjct: 156 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 5/197 (2%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ GVGKSCLL +F++ + D TIGV+F + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 15 GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRG+ G ++VYD+T + ++N + WL + + L+GNK DL+ R V YD
Sbjct: 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
AK+FA+ N + F+E SA+ NVE AFL A++I +++ LN Q KE G
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET-----TQKKEDKG 189
Query: 202 PASLGDSSSSDKPNCSC 218
+L S ++ C C
Sbjct: 190 NVNLKGQSLTNTGGCCC 206
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 106/157 (67%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 15 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI + TY ++ WL + ++ + N VI L+GNK DL R V D
Sbjct: 75 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
EA+ FAE+N L F+E SA+ NVE AF +IY+
Sbjct: 135 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 105/156 (67%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 36 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 95
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI + TY ++ WL + ++ + N VI L+GNK DL R V D
Sbjct: 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 155
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
EA+ FAE+N L F+E SA+ NVE AF +IY
Sbjct: 156 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 105/156 (67%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 12 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI + TY ++ WL + ++ + N VI L+GNK DL R V D
Sbjct: 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTD 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
EA+ FAE+N L F+E SA+ NVE AF +IY
Sbjct: 132 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 105/156 (67%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 18 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 77
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+VYDI + TY ++ WL + ++ + N VI L+GNK DL R V D
Sbjct: 78 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTD 137
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
EA+ FAE+N L F+E SA+ NVE AF +IY
Sbjct: 138 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 119/197 (60%), Gaps = 5/197 (2%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ GVGKSCLL +F++ + D TIGV+F + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 15 GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRG+ G ++VYD+T + ++N + WL + + L+GNK DL+ R V YD
Sbjct: 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
AK+FA+ N + F+E SA+ NVE AFL A++I +++ LN Q KE G
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET-----TQKKEDKG 189
Query: 202 PASLGDSSSSDKPNCSC 218
+L S ++ C
Sbjct: 190 NVNLKGQSLTNTGGGCC 206
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 104/155 (67%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ GVGKSCLL +F++ + D TIGV+F + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 28 GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 87
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRG+ G ++VYD+T + ++N + WL + + L+GNK DL+ R V YD
Sbjct: 88 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD 147
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ N + F+E SA+ NVE AFL A++I
Sbjct: 148 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI-KLQIWDTAGQERFRAV 80
GD GVGKS LL +FT +F + TIGVEF T+ I++ KI K QIWDTAGQER+RA+
Sbjct: 14 GDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAI 73
Query: 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
T +YYRGA GAL+VYDIT+++++ ++ WL + ++ + N VI L+GNK DL+ R +
Sbjct: 74 TSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVIND 133
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
++A ++A++ L F+E SA+ NVE AF + +IY N++ K
Sbjct: 134 NDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY-NVRQKK 176
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 103/159 (64%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ GVGK+ LL +FT +F D TIGVEF TR + + +K QIWDTAG ER+RA+T
Sbjct: 17 GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+V+D+T+ TY + WL + + V+ L+GNK DL +R+V +
Sbjct: 77 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTE 136
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
EA+ FAE N L+F+E SA+ NVE AF K+I+ +
Sbjct: 137 EARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 103/159 (64%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ GVGK+ LL +FT +F D TIGVEF TR + + +K QIWDTAG ER+RA+T
Sbjct: 32 GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA GAL+V+D+T+ TY + WL + + V+ L+GNK DL +R+V +
Sbjct: 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTE 151
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
EA+ FAE N L+F+E SA+ NVE AF K+I+ +
Sbjct: 152 EARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 107/174 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 23 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + ++N++ WL + + N L+GNK DL + V Y
Sbjct: 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 142
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQ 195
AK+FA+ + F+E SA NVEQ+F+ A +I + + G +S V+
Sbjct: 143 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 196
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 27 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 86
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G ++VYD+T T+ ++ W N + L+GNK D+E +R V D
Sbjct: 87 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTAD 145
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
+ + A+E + F+E+SA +NV + F AK I + I KL
Sbjct: 146 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKL 189
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 100/155 (64%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 6 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 65
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + ++N++ WL + + N L+GNK DL + V Y
Sbjct: 66 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 125
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQ+F+ A +I
Sbjct: 126 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 100/155 (64%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 13 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + ++N++ WL + + N L+GNK DL + V Y
Sbjct: 73 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQ+F+ A +I
Sbjct: 133 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 100/155 (64%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 13 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + ++N++ WL + + N L+GNK DL + V Y
Sbjct: 73 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQ+F+ A +I
Sbjct: 133 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 100/155 (64%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 32 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 91
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + ++N++ WL + + N L+GNK DL + V Y
Sbjct: 92 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 151
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQ+F+ A +I
Sbjct: 152 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 109/169 (64%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ GVGK+CL+ +FT+ F P TIGV+F + +E++GEK+KLQIWDTAGQERFR++T
Sbjct: 33 GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT 92
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+SYYR A ++ YDIT ++ L WL + + + + L+GNK+DL R+V
Sbjct: 93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ 152
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
A++F+E D+ ++E SA +NVE+ FL+ A ++ + L N++
Sbjct: 153 RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVS 201
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 106/158 (67%), Gaps = 2/158 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ GVGKS LL +FT+ F P+ TIGV+F + I V G K KL IWDTAGQERFR +T
Sbjct: 22 GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 81
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDLEGSRDVRY 140
SYYRGA G ++VYD+TRR T+ L +WL + + N ++ L+GNK+D E +R+V
Sbjct: 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE-NREVDR 140
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
+E KFA ++ +F+EASA T + V+ AF E +KI Q
Sbjct: 141 NEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQIWDTAGQERFR +T
Sbjct: 10 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G ++VYDIT T+ ++ W N + L+GNK D+E +R V D
Sbjct: 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTAD 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
+ + A+E + F+E+SA +NV + F AK I + I
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 100/155 (64%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGK+CLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 23 GDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + ++N++ WL + + N L+GNK DL + V Y
Sbjct: 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 142
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQ+F+ A +I
Sbjct: 143 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 99/155 (63%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 40 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 99
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + ++N++ WL + + N L+GNK DL + V Y
Sbjct: 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 159
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQ+F A +I
Sbjct: 160 TAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQIWDTAGQERFR +T
Sbjct: 10 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G ++VYDIT T+ ++ W N + L+GNK D E +R V D
Sbjct: 70 TAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE-TRVVTAD 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
+ + A+E + F+E+SA +NV + F AK I + I
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 14 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 73
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G ++VYD+T T+ ++ W N + L+GNK D+E +R V D
Sbjct: 74 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTAD 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
+ + A+E + F+E+SA +NV + F AK I + I
Sbjct: 133 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 10 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G ++VYD+T T+ ++ W N + L+GNK D E +R V D
Sbjct: 70 TAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE-TRVVTAD 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
+ + A+E + F+E+SA +NV + F AK I + I
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 99/155 (63%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 15 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + ++N++ WL + + N L+G K DL + V Y
Sbjct: 75 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYT 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQ+F+ A +I
Sbjct: 135 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 16 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + +Y ++ WL + + N L+GNK DL + V
Sbjct: 76 SSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNT 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQAF+ A +I
Sbjct: 136 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+C++ +F F TIGV+F + +E+ G+++KLQIWDTAGQERFR +T
Sbjct: 36 GDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTIT 95
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+SYYR A GA++ YDIT+RS++ + W+ D + N V LIGNK DL R+V
Sbjct: 96 QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLA 155
Query: 142 EAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
EA+ AE D++ +E SA NVE+AFL A ++
Sbjct: 156 EAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 16 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T + +Y ++ WL + + N L+GNK DL + V
Sbjct: 76 SSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNT 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
AK+FA+ + F+E SA NVEQAF+ A +I
Sbjct: 136 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 99/160 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R I + + +KLQIWDTAGQERFR +T
Sbjct: 16 GDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTIT 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SYYRGA G ++VYD+T R +++++ W+ + N L+GNK DL R V D
Sbjct: 76 SSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSD 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
E ++ A+ + + F+E SA NVEQAF A +I + ++
Sbjct: 136 EGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80
GD GVGK+CLL +F + F+ T+G++F ++++V G K+KLQ+WDTAGQERFR+V
Sbjct: 17 GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV 76
Query: 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
T +YYR A L++YD+T +++++++ +WLT+ + + L+GNK+D R V+
Sbjct: 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR 136
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ +K A+E L F+E SA TG NV+ AF AK++
Sbjct: 137 EDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 99/155 (63%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGK+C+L +F+E F TIG++F R IE+ G++IKLQIWDTAGQERFR +T
Sbjct: 15 GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G ++VYDIT +++++ +W+ + + + + ++GNK D+ R V +
Sbjct: 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+K A + + F+E SA NVE AF A+ I
Sbjct: 135 RGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGK+ L+ +FT+ F C T+GV+F + +E+ G+KI+LQIWDTAGQERF ++T
Sbjct: 33 GSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 92
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYR A G ++VYDIT++ T++ L W+ + + + L+GNK+D E R++
Sbjct: 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQ 152
Query: 142 EAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
+ +KFA++ + F EASA NV++ FL+ I + +
Sbjct: 153 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 99/155 (63%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGK+C+L +F+E F TIG++F R IE+ G++IKLQIWDTAGQERFR +T
Sbjct: 13 GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G ++VYDIT +++++ +W+ + + + + ++GNK D+ R V +
Sbjct: 73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+K A + + F+E SA NVE AF A+ I
Sbjct: 133 RGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 97/155 (62%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS ++ +F E F P+ TIG F T+ ++ E K IWDTAGQERFRA+
Sbjct: 12 GDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALA 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRG+A A++VYDIT+ T++ L +W+ + + P+ V+ + GNK DL R+V
Sbjct: 72 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+AK +A+ IFVE SA N+ + F+E +++I
Sbjct: 132 DAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 101/155 (65%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+G GKS L+ +F + +F+ TIG F ++ + V+ +K +IWDTAGQER+ ++
Sbjct: 19 GDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGAA A++V+D+T ++++ W+ + + NPN V+ L GNK DL +R V +
Sbjct: 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAE 138
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+A+ +A+EN L F+E SA T NV++ F E A+++
Sbjct: 139 DAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 96/155 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS ++ +F E F P+ TIG F T+ ++ E K IWDTAG ERFRA+
Sbjct: 13 GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRG+A A++VYDIT+ T++ L +W+ + + P+ V+ + GNK DL R+V
Sbjct: 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+AK +A+ IFVE SA N+ + F+E +++I
Sbjct: 133 DAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 96/155 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 15 GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLA 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT + T+ +W+ + + +P+ VI L GNK DL R V Y+
Sbjct: 75 PMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYE 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
EA+ +A++N L+F+E SA T NV FL AKK+
Sbjct: 135 EAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 95/155 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 10 GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT T+ +W+ + + +PN VI L GNK DL R V +
Sbjct: 70 PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 129
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
EA+ +A++N L+F+E SA T NV + F+ AKK+
Sbjct: 130 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 14 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 73
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 74 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EA+ +A++N L+F+E SA T NV + F+ AKK+ +N
Sbjct: 134 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EA+ +A++N L+F+E SA T NV + F+ AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EA+ +A++N L+F+E SA T NV + F+ AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EA+ +A++N L+F+E SA T NV + F+ AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 95/158 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 14 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 73
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 74 PXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EA+ +A++N L+F E SA T NV + F AKK+ +N
Sbjct: 134 EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EA+ +A++N L+F+E SA T NV + F+ AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EA+ +A++N L+F+E SA T NV + F+ AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
EA+ +A++N L+F+E SA T NV + F+ AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TI F T+ + + +K +IWDTAGQER+ ++
Sbjct: 12 GESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT T+ +W+ + + +PN VI L GNK DL R V +
Sbjct: 72 PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
EA+ +A++N L+F+E SA T NV + F+ AKK+
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAG ER+ ++
Sbjct: 12 GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLA 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT T+ +W+ + + +PN VI L GNK DL R V +
Sbjct: 72 PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
EA+ +A++N L+F+E SA T NV + F+ AKK+
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 94/155 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAG ER+ ++
Sbjct: 12 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLA 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRGA A++VYDIT ++ +W+ + + +PN VI L GNK DL R V +
Sbjct: 72 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
EA+ +A++N L+F+E SA T NV + F+ AKK+
Sbjct: 132 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L ++ + F P T+G++F + + H ++IKLQIWDTAGQER+R +T
Sbjct: 29 GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT 88
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G L++YDI + ++ + W T K + N + L+GNK DLE R V +
Sbjct: 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE 148
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAF 169
+ ++ A++ F EASA NV+Q F
Sbjct: 149 DGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L ++ + F P T+G++F + + H +++KLQIWDTAGQER+R +T
Sbjct: 30 GNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT 89
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G +++YDIT ++N + W T K + N + L+GNK D+E R V +
Sbjct: 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTE 149
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
+ + AE+ F EASA +V QAF I + D
Sbjct: 150 KGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 89/148 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L ++ + F P T+G++F + I + ++IKLQIWDTAGQER+R +T
Sbjct: 12 GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTIT 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G +++YDIT ++N + W T K + N + L+GNK D+E R V +
Sbjct: 72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAF 169
++ A+ F EASA NV+Q F
Sbjct: 132 RGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS LL +F + F TIGV+F R +E++GEK+KLQIWDTAGQERFR +T
Sbjct: 16 GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRG G ++VYD+T ++ ++ WL + N + L+GNK D + V +
Sbjct: 76 STYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPERKVVETE 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAF 169
+A KFA + + E SA NVE+ F
Sbjct: 135 DAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 5 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 64
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
SYYRGA G ++VYD+T + ++N++ WL + + N L+GNK DL
Sbjct: 65 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 93/152 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ +F F TIG++F ++ + + I+LQ+WDTAGQERFR++
Sbjct: 13 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SY R +A A++VYDIT +++ + W+ D + + +I L+GNK DL R V +
Sbjct: 73 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETA 173
E ++ A+E +++F+E SA G NV+Q F A
Sbjct: 133 EGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 86/148 (58%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L ++ + F P T+G++F + I + ++IKLQIWDTAG ER+R +T
Sbjct: 15 GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
+YYRGA G ++ YDIT ++N + W T K + N + L+GNK D E R V +
Sbjct: 75 TAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSE 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAF 169
++ A+ F EASA NV+Q F
Sbjct: 135 RGRQLADHLGFEFFEASAKDNINVKQTF 162
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 95/155 (61%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ ++ +F F + TIG++F ++ + + ++LQ+WDTAGQERFR++
Sbjct: 8 GEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI 67
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SY R +A A++VYDIT R ++ + + W+ D N + +I L+GNK DL R V Y+
Sbjct: 68 PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYE 127
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
E + A+E + F E SA G N++ F +TA K+
Sbjct: 128 EGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS ++ +F F + TIG F T+ + ++ +K +IWDTAGQERF ++
Sbjct: 10 GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE---GSRDV 138
YYR A AL+VYD+T+ ++ W+ + + + +I L+GNK+D G R V
Sbjct: 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKV 129
Query: 139 RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+E +K AEE L+F E SA TGENV FL +KI
Sbjct: 130 AREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 94/157 (59%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAGQERFR++
Sbjct: 9 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SY R + A++VYDIT +++ S W+ D + + +I L+GNK DL R + +
Sbjct: 69 PSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIE 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
E ++ A+E ++F+E SA TG NV+Q F A + +
Sbjct: 129 EGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 94/155 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAGQERFR++
Sbjct: 21 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SY R + A++VYDIT ++++ S W+ D + + +I L+GNK DL R V +
Sbjct: 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 140
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
E ++ A+E +++F+E SA G NV+Q F A +
Sbjct: 141 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 91/155 (58%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS ++ +F + F + TIG F T+ + E K IWDTAGQERF ++
Sbjct: 30 GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA 89
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYRG+A A++VYDIT++ ++ L W+ + K N V+ + GNK DL R+V
Sbjct: 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK 149
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+AK++AE I VE SA N+E+ F +++I
Sbjct: 150 DAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 93/155 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ +F F TIG++F ++ + + I+LQ+WDTAG ERFR++
Sbjct: 20 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI 79
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SY R +A A++VYDIT +++ + W+ D + + +I L+GNK DL R V +
Sbjct: 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 139
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
E ++ A+E +++F+E SA G NV+Q F A +
Sbjct: 140 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAGQERFR++
Sbjct: 8 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 67
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SY R + A++VYDIT +++ + W+ D + + +I L+GNK DL R V +
Sbjct: 68 PSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 127
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETA 173
E ++ A+E +++F+E SA G NV+Q F A
Sbjct: 128 EGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 100/158 (63%), Gaps = 11/158 (6%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------KIKLQIWDT 71
GD GVGK+ L+++T+ KF P T+G++F + + + + K+ LQ+WDT
Sbjct: 32 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDT 91
Query: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
AGQERFR++T +++R A G L+++D+T + ++ ++ +W++ + N N I LIGNK
Sbjct: 92 AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 151
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
DL R+V +A++ A++ + + E SA TG+NVE+A
Sbjct: 152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV 80
GD VGK+CL ++F +F TIGV+F R +++ GE+IK+Q+WDTAGQERFR ++
Sbjct: 27 GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 86
Query: 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDLEGSRDVR 139
+ YYR + VYD+T ++++ L +W+ + K N + L+GNK DL + V
Sbjct: 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP 146
Query: 140 YDEAKKFAEENDLIFVEASAMT---GENVEQAFLETAKKI 176
D A+KFA+ + + E SA ++VE F+ A K+
Sbjct: 147 TDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 91/152 (59%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAG ERFR++
Sbjct: 13 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SY R + A++VYDIT +++ + W+ D + + +I L+GNK DL R V +
Sbjct: 73 PSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETA 173
E ++ A+E +++F+E SA G NV+Q F A
Sbjct: 133 EGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 92/155 (59%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAG ERFR++
Sbjct: 23 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 82
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
SY R + A++VYDIT +++ + W+ D + + +I L+GNK DL R V +
Sbjct: 83 PSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 142
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
E ++ A+E +++F+E SA G NV+Q F A +
Sbjct: 143 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 117/208 (56%), Gaps = 16/208 (7%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 71
GD GVGK+ L+++T+ KF P T+G++F + + + G K+ LQ+WDT
Sbjct: 18 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
AG ERFR++T +++R A G L+++D+T + ++ ++ +W++ + N N I LIGNK
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
DL R+V +A++ AE+ + + E SA TG+NVE++ +ET + ++ +
Sbjct: 138 DLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIMK----RMEKCVE 192
Query: 191 ESGVQHKERGGPASLGDSSSSDKPNCSC 218
++ V GG + D + C+C
Sbjct: 193 KTQVPDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 11/158 (6%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 71
GD GVGK+ L+++T+ KF P T+G++F + + + G K+ LQ+WDT
Sbjct: 18 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
AG ERFR++T +++R A G L+++D+T + ++ ++ +W++ + N N I LIGNK
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
DL R+V +A++ AE+ + + E SA TG+NVE++
Sbjct: 138 DLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV 80
GD VGK+CL ++F +F TIGV+F R +++ GE+IK+Q+WDTAGQERFR ++
Sbjct: 36 GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 95
Query: 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDLEGSRDVR 139
+ YYR + VYD T ++++ L +W+ + K N + L+GNK DL + V
Sbjct: 96 VQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP 155
Query: 140 YDEAKKFAEENDLIFVEASAMT---GENVEQAFLETAKKI 176
D A+KFA+ + E SA ++VE F A K+
Sbjct: 156 TDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGKS L + + +F + T+GV+F + + V GE+ LQ+WDTAGQERFR++
Sbjct: 35 GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA 94
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL------EGS 135
+SY+R A G L++YD+T ++ ++ W+ ++ + I L+GNK D+ EG
Sbjct: 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQ 154
Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+ V +K A +F E SA G N+ +A L A+++
Sbjct: 155 KCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 97/158 (61%), Gaps = 11/158 (6%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 71
GD GVGK+ L+++T+ KF P T+G++F + + + G K+ LQ+WDT
Sbjct: 18 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
AG ERFR++T +++R A G L+ +D+T + ++ ++ +W + + N N I LIGNK
Sbjct: 78 AGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKA 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
DL R+V +A++ AE+ + + E SA TG+NVE++
Sbjct: 138 DLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 97/158 (61%), Gaps = 11/158 (6%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 71
GD GVGK+ L+++T+ KF P T+G++F + + + G K+ LQ+WDT
Sbjct: 18 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
AG ERFR++T +++R A G L+ +D+T + ++ ++ +W + + N N I LIGNK
Sbjct: 78 AGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKA 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
DL R+V +A++ AE+ + + E SA TG+NVE++
Sbjct: 138 DLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 91/157 (57%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ ++ E KF T+G F T+ + + G+++ L IWDTAGQERF A+
Sbjct: 13 GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYR + GA++VYDIT ++ + +W+ + + + + ++GNK+DLE R V
Sbjct: 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
EA+ +AE SA + +E+ FL+ K++ +
Sbjct: 133 EAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS L++++ KF HTIGVEF R +EV G + LQIWDTAGQERF+++
Sbjct: 14 GDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLR 73
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTD---TKNLTNPNTVIFLI-GNKMDLEGSRD 137
+YRGA L+ + + R ++ +L +W + ++ +P F++ GNK+D E R
Sbjct: 74 TPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE-DRQ 132
Query: 138 VRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
V +EA+ + EN D ++E SA NV AF E +++
Sbjct: 133 VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS L++++ KF HTIGVEF + +EV G + +QIWDTAGQERFR++
Sbjct: 18 GDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 77
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLI-GNKMDLEGSRD 137
+YRG+ L+ + + ++ +LS+W ++ P + F+I GNK D++ R
Sbjct: 78 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIK-ERQ 136
Query: 138 VRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
V +EA+ + ++N D + E SA NV AF E ++I
Sbjct: 137 VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS L++++ KF HTIGVEF + +EV G + +QIWDTAGQERFR++
Sbjct: 14 GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 73
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLI-GNKMDLEGSRD 137
+YRG+ L+ + + ++ +LS+W ++ P + F+I GNK+D+ R
Sbjct: 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI-SERQ 132
Query: 138 VRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
V +EA+ + +N D + E SA NV AF E +++
Sbjct: 133 VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGKS L++++ KF HTIGVEF + +EV G + +QIWDTAGQERFR++
Sbjct: 16 GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLI-GNKMDLEGSRD 137
+YRG+ L+ + + ++ +LS+W ++ P + F+I GNK+D+ R
Sbjct: 76 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI-SERQ 134
Query: 138 VRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
V +EA+ + +N D + E SA NV AF E +++
Sbjct: 135 VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 96/158 (60%), Gaps = 11/158 (6%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------GEKIKLQIWDT 71
GD GVGK+ +L+Q+T+ KF T+G++F + + G++I LQ+WDT
Sbjct: 18 GDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDT 77
Query: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
AG ERFR++T +++R A G L+++D+T ++ ++ +W++ + + + N I L GNK
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
DLE R V+ +EA++ AE+ + + E SA G N+ A
Sbjct: 138 DLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 7/164 (4%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK-LQIWDTAGQERFRAV 80
GD GVGK+ L+H++ K+ TIG +F T+ + V G+K+ +Q+WDTAGQERF+++
Sbjct: 15 GDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL 74
Query: 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT---KNLTNPNTVIFLI-GNKMDLEGSR 136
++YRGA ++VYD+T S++ ++ SW + N+ +P T F+I GNK+D E S+
Sbjct: 75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK 134
Query: 137 DVRYDE-AKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQ 178
+ ++ A++ A+ D+ SA NV+ AF E A+ Q
Sbjct: 135 KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 20/205 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAGQERF+++
Sbjct: 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGSRD 137
++YRGA ++V+D+T +T+ L SW + +P N ++GNK+D E +R
Sbjct: 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFE-NRQ 133
Query: 138 VRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQ- 195
V A+ + +N++ + E SA NVEQAF A+ NA E+ V+
Sbjct: 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR-----------NALKQETEVEL 182
Query: 196 HKERGGPASL--GDSSSSDKPNCSC 218
+ E P L D + + +CSC
Sbjct: 183 YNEFPEPIKLDKNDRAKASAESCSC 207
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 111/205 (54%), Gaps = 20/205 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAGQERF+++
Sbjct: 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGSRD 137
++YRGA ++V+D+T +T+ L SW + +P N ++GNK+DLE +R
Sbjct: 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQ 133
Query: 138 VRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQ- 195
V A+ + +N++ + E SA NVEQAF A+ NA E+ V+
Sbjct: 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR-----------NALKQETEVEL 182
Query: 196 HKERGGPASL--GDSSSSDKPNCSC 218
+ E P L + + + +CSC
Sbjct: 183 YNEFPEPIKLDKNERAKASAESCSC 207
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 90/157 (57%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ ++ E KF T+ F T+ + + G+++ L IWDTAGQERF A+
Sbjct: 27 GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 86
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYR + GA++VYDIT ++ + +W+ + + + + ++GNK+DLE R V
Sbjct: 87 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 146
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
EA+ +AE SA + +E+ FL+ K++ +
Sbjct: 147 EAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 90/157 (57%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGK+ L+ ++ E KF T+ F T+ + + G+++ L IWDTAGQERF A+
Sbjct: 13 GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YYR + GA++VYDIT ++ + +W+ + + + + ++GNK+DLE R V
Sbjct: 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
EA+ +AE SA + +E+ FL+ K++ +
Sbjct: 133 EAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 20/205 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAG ERF+++
Sbjct: 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLG 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGSRD 137
++YRGA ++V+D+T +T+ L SW + +P N ++GNK+DLE +R
Sbjct: 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQ 133
Query: 138 VRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQ- 195
V A+ + +N++ + E SA NVEQAF A+ NA E+ V+
Sbjct: 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR-----------NALKQETEVEL 182
Query: 196 HKERGGPASL--GDSSSSDKPNCSC 218
+ E P L D + + +CSC
Sbjct: 183 YNEFPEPIKLDKNDRAKASAESCSC 207
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAGQERF+++
Sbjct: 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGSRD 137
++YRGA ++V+D+T +T+ L SW + +P N ++GNK+DLE +R
Sbjct: 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQ 133
Query: 138 VRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAK 174
V A+ + +N++ + E SA NVEQAF A+
Sbjct: 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 40/196 (20%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV---------------------- 59
G+ VGKS ++ + T+ F + TIG F T ++ +
Sbjct: 14 GESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSIND 73
Query: 60 ---------HGE------KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 104
H IK IWDTAGQER+ ++ YYRGA A++V+DI+ +T +
Sbjct: 74 DNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLD 133
Query: 105 HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164
+W+ K + N +I L+ NK+D + V E +K+A++N+L+F++ SA TG N
Sbjct: 134 RAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190
Query: 165 VEQAFLETAKKIYQNI 180
++ F A++IY+NI
Sbjct: 191 IKNIFYMLAEEIYKNI 206
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G+ VGKS ++ ++ + F D TIGV+F R I+V+ E ++L +WDTAGQE F A+T
Sbjct: 12 GNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSW----LTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
++YYRGA ++V+ T R ++ +SSW + + ++ L+ NK+DL
Sbjct: 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-----LVQNKIDLLDDSC 126
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
++ +EA+ A+ L F S NV + F A+K Q
Sbjct: 127 IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAGQE + A+
Sbjct: 21 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 79
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
+Y+R G L V+ IT ++ + + + V FL +GNK DLE R V
Sbjct: 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 139
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+EAK AE+ ++ +VE SA T NV++ F + ++I
Sbjct: 140 EEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAGQE + A+
Sbjct: 25 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 83
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
+Y+R G L V+ IT ++ + + + V FL +GNK DLE R V
Sbjct: 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 143
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+EAK AE+ ++ +VE SA T NV++ F + ++I
Sbjct: 144 EEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAGQE + A+
Sbjct: 13 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
+Y+R G L V+ IT ++ + + + V FL +GNK DLE R V
Sbjct: 72 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 131
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+EAK AE+ ++ +VE SA T NV++ F + ++I
Sbjct: 132 EEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAGQE + A+
Sbjct: 11 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
+Y+R G L V+ IT ++ + + + V FL +GNK DLE R V
Sbjct: 70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 129
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+EAK A++ ++ +VE SA T NV++ F + ++I
Sbjct: 130 EEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAG E + A+
Sbjct: 13 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
+Y+R G L V+ IT ++ + + + V FL +GNK DLE R V
Sbjct: 72 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 131
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+EAK AE+ ++ +VE SA T NV++ F + ++I
Sbjct: 132 EEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRAV 80
GD GK+ L F ++ F TIG++F R I + G + LQIWD GQ +
Sbjct: 13 GDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72
Query: 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN---TVIFLIGNKMDLEGSRD 137
Y GA G L+VYDIT ++ +L W T K ++ + ++ L+GNK+DLE R
Sbjct: 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT 132
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ ++ +F +EN SA TG++V F + A +I
Sbjct: 133 IKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 3/173 (1%)
Query: 4 MSSSGQXXXXXXXXXXXXGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
M+S+ Q GD G GK+ + + +F T+GVE + +
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
IK +WDTAGQE+F + YY A A++++D+T R TY ++ +W D + N I
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPI 122
Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
L GNK+D++ R V+ ++ F + +L + + SA + N E+ FL A+K+
Sbjct: 123 VLCGNKVDIK-DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAG E + A+
Sbjct: 14 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI--FLIGNKMDLEGSRDVR 139
+Y+R G L+V+ IT ++ + + + I ++GNK DLE R V
Sbjct: 73 DNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVP 132
Query: 140 YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+EA+ AEE + +VE SA T NV++ F + ++I
Sbjct: 133 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L QF + F+ D TI + T+I V G +L I DTAGQE F A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L+V+ I R ++N + T + + + + L+GNK DLE R V EA F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
+ + + EASA NV++AF + + +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAG E + A+
Sbjct: 10 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI--FLIGNKMDLEGSRDVR 139
+Y+R G L+V+ IT ++ + + + I ++GNK DLE R V
Sbjct: 69 DNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVP 128
Query: 140 YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+EA+ AEE + +VE SA T NV++ F + ++I
Sbjct: 129 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 22 GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77
GD G GK+ + + E+K++P T+GVE + + IK +WDTAGQE+F
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVP----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
+ YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRK 130
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
V+ ++ F + +L + + SA + N E+ FL A+K+
Sbjct: 131 VK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)
Query: 4 MSSSGQXXXXXXXXXXXXGDMGVGKSCLLHQF----TEQKFMPDCPHTIGVEFGTRIIEV 59
M+S+ Q GD G GK+ + + +E+K++ T+GVE +
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYV----ATLGVEVHPLVFHT 59
Query: 60 HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP 119
+ IK +WDTAGQE+F + YY A A++++D+T R TY ++ +W D +
Sbjct: 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE- 118
Query: 120 NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
N I L GNK+D++ R V+ ++ F + +L + + SA + N E+ FL A+K+
Sbjct: 119 NIPIVLCGNKVDIK-DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 22 GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77
GD G GK+ + + E+K++P T+GVE + + IK +WDTAGQE+F
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVP----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
+ YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRK 130
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
V+ ++ F + +L + + SA + N E+ FL A+K+
Sbjct: 131 VK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 77 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 77 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 77 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 10 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 70 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 126
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 127 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLE 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 77 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G +GVGKS L QF + F+ TI + ++ EV ++ L+I DTAG E+F A+
Sbjct: 12 GSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMR 70
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
Y + G +VY IT +ST+N L + + + V + L+GNK DLE R V
Sbjct: 71 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGK 130
Query: 141 DEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
++ + A + N+ F+E+SA + NV + F + ++I
Sbjct: 131 EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++ +D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 77 DGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAGQE++ +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLR 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 77 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAG E+F +
Sbjct: 19 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 78
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 79 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 136 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIG-VEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80
GD GVGK+ +++ + +F + T+G V ++ G IK +WDTAGQE+ +
Sbjct: 18 GDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL 77
Query: 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
YY GA+GA++ +D+T R T +L+ W+ + + + I + NK+D++ + +
Sbjct: 78 KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK 137
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174
+ + + + E SA T N FL A+
Sbjct: 138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF + F+ TI + ++ EV ++ L+I DTAG E+F A+
Sbjct: 10 GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
Y + G +VY IT +ST+N L + + + V + L+GNK DLE R V
Sbjct: 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGK 128
Query: 141 DEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
++ + A + N+ F+E+SA + NV + F + ++I
Sbjct: 129 EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAG E+F +
Sbjct: 13 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 73 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 129
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 130 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F T+GVE + + IK +WDTAG E+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 77 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
++ F + +L + + SA + N E+ FL A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F TIGVE + +IK +WDTAG E+F +
Sbjct: 19 GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 78
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 79 DGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVK-ERKVK-A 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+ F + +L + + SA + N E+ FL A+K+ N
Sbjct: 136 KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 173
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+C+L +T KF D T+ F + V G+ + L +WDTAGQE + +
Sbjct: 16 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQEDYSRLR 74
Query: 82 RSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
YRGA ++ + + +++Y N L W+ + + PN I L+G K+DL
Sbjct: 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR------- 126
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQ-----AFLETAKKIYQNIK 181
D+ A+ ++I ++ GE + + A++E + K QN+K
Sbjct: 127 DDKGYLADHTNVI----TSTQGEELRKQIGAAAYIECSSKTQQNVK 168
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F TIGVE + +IK +WDTAG E+F +
Sbjct: 12 GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 72 DGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVK-ERKVK-A 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+ F + +L + + SA + N E+ FL A+K+ N
Sbjct: 129 KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 166
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ + + +F TIGVE + +IK +WDTAG E+F +
Sbjct: 11 GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 70
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
YY A A++++D+T R TY ++ +W D + N I L GNK+D++ R V+
Sbjct: 71 DGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVK-ERKVK-A 127
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+ F + +L + + SA + N E+ FL A+K+ N
Sbjct: 128 KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 10 GAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
Y R G L V+ I ++ + + K + + + V + L+GNK DL G R V
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG-RTVES 127
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+A+ A + ++E SA T + VE AF ++I Q+
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF + F+ + TI + ++ EV ++ L+I DTAG E+F A+
Sbjct: 10 GSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
Y + G +VY IT +ST+N L + + V + L+GNK DLE R V
Sbjct: 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK 128
Query: 141 DEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
++ + A + + F+E+SA + NV + F + ++I
Sbjct: 129 EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L QF + F+ D TI + + + + +L I DTAGQE F A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L+V+ +T R ++ + + + + + + LIGNK DL+ R V +E ++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
A + + ++EASA NV+QAF E + I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L+ +F ++F+ + T+ + + + E + ++I DTAGQE +
Sbjct: 35 GRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED--TIQ 91
Query: 82 RS-YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP-NTVIFLIGNKMDLEGSRDVR 139
R + R G ++VYDIT R ++ + + P N + L+GNK DL+ SR V
Sbjct: 92 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS 151
Query: 140 YDEAKKFAEENDLIFVEASAMTGE-NVEQAFLETAKKI 176
+E +K A E F E SA TGE N+ + F E +++
Sbjct: 152 TEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F D T+ F ++ V+G + L +WDTAGQE + +
Sbjct: 15 GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNRLR 73
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
YRGA ++ + + +++Y ++S W+ + K+ P I L+G K+DL +
Sbjct: 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFI 132
Query: 141 DEAKKFA-------EENDLI----FVEASAMTGENVEQAFLETAKKIYQ 178
D E LI ++E S+ + ENV+ F + + Q
Sbjct: 133 DHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 10 GARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
Y R G L V+ I ++ + + K + + + V + L+GNK DL +R V
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVES 127
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+A+ A + ++E SA T + VE AF ++I Q+
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L QF + F+ TI + ++ EV ++ L+I DTAG E+F A+
Sbjct: 10 GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
Y + G +VY IT +ST+N L + + V + L+GNK DLE R V
Sbjct: 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK 128
Query: 141 DEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
++ + A + + F+E+SA + NV + F + ++I
Sbjct: 129 EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 10 GAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
Y R G L V+ I ++ + + K + + + V + L+GNK DL +R V
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVES 127
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+A+ A + ++E SA T + VE AF ++I Q+
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+C+L +T F D T+ F ++ V G + L +WDTAGQE + +
Sbjct: 13 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLR 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
YRGA ++ + + +++Y +++ W+ + ++ P I L+G K+DL +
Sbjct: 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFI 130
Query: 141 D-------------EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
D E KK I++E S+ T +NV+ F K + Q
Sbjct: 131 DHPGAVPITTNQGEELKKLIGSP--IYIECSSKTQQNVKAVFDAAIKVVLQ 179
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEA 143
R G L V+ I ++ + + K + + + V + L+GNK DL +R V +A
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQA 130
Query: 144 KKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+ A + ++E SA T + VE AF ++I Q+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 22 GDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW--DTAGQERF 77
G+ VGKS L+ FT + KF+ D T GVE + + + ++++ DTAG + +
Sbjct: 27 GEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY 86
Query: 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL----TNPNTVIFLIGNKMDLE 133
+ Y+ G A++V+D++ ++ +W K+ P + L+ NK DL
Sbjct: 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV-LVANKTDLP 145
Query: 134 GSR-DVRYDEAKKFAEENDLIFVEASA-MTGENVEQAFLETAKKIYQNIKD 182
R VR D A+ +A N L F + SA G++ + FL A Y+N +D
Sbjct: 146 PQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ +C TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEA 143
R G L V+ I ++ + + K + + V + L+GNK DL SR V +A
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQA 131
Query: 144 KKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+ A + F+E SA T + V+ AF ++I
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEA 143
R G L V+ I ++ + + K + + V + L+GNK DL SR V +A
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQA 131
Query: 144 KKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
+ A + F+E SA T + V+ AF ++I
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTAGQ+ +
Sbjct: 13 GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
++Y G ++VY +T ++ + ++ + I L+GNK DL R + Y
Sbjct: 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 131
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAF 169
+E K AE + F+E+SA + F
Sbjct: 132 EEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTAGQ+ +
Sbjct: 11 GYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
++Y G ++VY +T ++ + ++ + I L+GNK DL R + Y
Sbjct: 70 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 129
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAF 169
+E K AE + F+E+SA + F
Sbjct: 130 EEGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 5/159 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTAGQ+ +
Sbjct: 8 GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 66
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
++Y G ++VY +T ++ + ++ + I L+GNK DL R + Y
Sbjct: 67 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 126
Query: 141 DEAKKFAEENDLIFVEASA---MTGENVEQAFLETAKKI 176
+E K AE + F+E+SA T +V + + A+KI
Sbjct: 127 EEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTAGQ+ +
Sbjct: 13 GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
++Y G ++VY +T ++ + ++ + I L+GNK DL R + Y
Sbjct: 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 131
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAF 169
+E K AE + F+E+SA + F
Sbjct: 132 EEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 15/167 (8%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+C+L +T F D T+ F ++ V G + L +WDTAGQE + +
Sbjct: 13 GDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLR 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
YRGA L+ + + +++Y ++ WL + K+ P I L+G K+DL +
Sbjct: 72 PLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRDDKQFLK 130
Query: 141 DEAKKFA-------EENDLI----FVEASAMTGENVEQAFLETAKKI 176
D + E +I ++E S+ T +NV+ F +TA ++
Sbjct: 131 DHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-DTAIRV 176
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN 186
A + ++E SA T + VE AF ++I Q+ K KLN
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-KLRKLN 172
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+ GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 13 GDVACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 72 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 130
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K E D+ ++E SA T + V + F
Sbjct: 131 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L QF ++ F+PD TI + + E+ + L + DTAGQE F A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L+VY +T ++++ H+ + + + + + L+ NK+DL R V D+ K+
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 147 AEENDLIFVEASAMTGE-NVEQAFLETAKKIYQN 179
A + ++ ++E SA NV++ F + + I Q
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ ++ + K + + + V + L+GNK DL +R V +A +
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
A+ + F+E SA T + VE AF ++I Q
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + +I + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 14 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 73 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 131
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
+ AK K E D+ ++E SA T + V + F E A + + GK
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 187
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
+ AK K E D+ ++E SA T + V + F E A + + GK
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 185
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 14 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 73 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 131
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
+ AK K E D+ ++E SA T + V + F E A + + GK
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 187
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 15 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 73
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 132
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
+ AK K E D+ ++E SA T + V + F E A + + GK
Sbjct: 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 188
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+ VGK+CLL +T F + T+ + ++ V + + L +WDTAGQE + +
Sbjct: 16 GDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLR 74
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + ++Y ++ + W + ++ P+T I L+G K+DL +D
Sbjct: 75 PLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH-HCPSTPIILVGTKLDLRDDKDTIE 133
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E D + ++E SA+T ++ F E + +
Sbjct: 134 KLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GN+ DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L QF ++ F+P+ TI + + E+ + L + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L+VY +T ++++ H+ + + + + + L+ NK+DL R V D+ K+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AEENDLIFVEASAMTGE-NVEQAFLETAKKIYQN 179
A + ++ ++E SA NV++ F + + I Q
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+ VGK+CLL +T F + T+ + ++ V + + L +WDTAGQE + +
Sbjct: 17 GDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLR 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + ++Y ++ + W + ++ P+T I L+G K+DL +D
Sbjct: 76 PLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH-HCPSTPIILVGTKLDLRDDKDTIE 134
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E D + ++E SA+T ++ F E + +
Sbjct: 135 KLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 16 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 74
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 75 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 133
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K E D+ ++E SA T + V + F
Sbjct: 134 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 14 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 73 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 131
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K E D+ ++E SA T + V + F
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 13 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 72 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 130
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K E D+ ++E SA T + V + F
Sbjct: 131 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 26 VGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY 85
VGK+ L HQF E +F T+ + ++I+ + ++ L + DTAGQ+ + + S+
Sbjct: 35 VGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAK 144
G G ++VY +T ++ + S V + L+GNK DL R+V+ E K
Sbjct: 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK 153
Query: 145 KFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
K AE F+E+SA + + F + ++I
Sbjct: 154 KLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + +I + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
K+ L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 32 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 91 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRR 149
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK + E D+ ++E SA T E V + F
Sbjct: 150 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 32 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 91 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFX-PNVPIILVGNKKDLRQDEHTRR 149
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK + E D+ ++E SA T E V + F
Sbjct: 150 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG+E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++ Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREFRQH 166
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+ GK+CLL F++ +F P E IEV G++++L +WDTAGQE +
Sbjct: 12 GDVACGKTCLLIVFSKDQF-PAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRAR 70
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL
Sbjct: 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTAR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K AE D+ ++E SA T + V + F
Sbjct: 130 ELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 12 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y +L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 129
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 130 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 32 GDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + + + S N W+ + K+ PN I L+ NK DL VR
Sbjct: 91 PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRT 149
Query: 141 DEAKKFAEE-------------NDLIFVEASAMTGENVEQAFLETAKK 175
+ A+ E ++E SA T E V + F ETA +
Sbjct: 150 ELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATR 196
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 14 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y +L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 73 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 131
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 132 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + V + L+GNK DL SR V +A+
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
A + F+E SA T + V+ AF ++I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + V + L+GNK DL SR V +A+
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
A + F+E SA T + V+ AF ++I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y +L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y +L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L QF ++ F+ D TI + + E+ + L + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L+VY +T ++++ H+ + + + + + L+ NK+DL R V D+ K+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AEENDLIFVEASAMTGE-NVEQAFLETAKKIYQN 179
A + ++ ++E SA NV++ F + + I Q
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V + + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + ++Y ++ + W + ++ P+T I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH-HCPSTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E D + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + + V + L+GNK DL +R V +A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
A + ++E SA T + VE AF ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 17 GDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 76 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 134
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 135 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E + +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 220
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + ++++H+ + W + ++ PNT I L+G K+DL +D
Sbjct: 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 279
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 280 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 37 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 95
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 154
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 155 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E + +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 220
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + ++++H+ + W + ++ PNT I L+G K+DL +D
Sbjct: 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 279
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 280 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQ 178
+ Y + A+E + ++E SA+T ++ F E + + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 20 GDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 78
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 79 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 137
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 138 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 29 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 87
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 88 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 146
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 147 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E + +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 220
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + ++++H+ + W + ++ PNT I L+G K+DL +D
Sbjct: 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 279
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 280 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L V+ I ++ + + K + + V + L+GNK DL SR V +A+
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
A + F+E SA T + V+ AF ++I
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
+ AK K E D+ ++E SA T + V + F E A + + GK
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 185
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
+ AK K E D+ ++E SA T + V + F E A + + GK
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 185
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL F++ + T+ F + +++ E+ L +WDTAGQE + +
Sbjct: 30 GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLR 88
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL--EGSRDV 138
Y + L+ + + R++++++S+ W + K+ + + L+G K+DL +GS DV
Sbjct: 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDV 147
Query: 139 RYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQN 179
E ++ + ++EAS++ + + F ++ I+ N
Sbjct: 148 TKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K E D+ ++E SA T + V + F
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 10 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 69 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 127
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K E D+ ++E SA T + V + F
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL F++ + T+ F + +++ E+ L +WDTAGQE + +
Sbjct: 29 GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLR 87
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL--EGSRDV 138
Y + L+ + + R++++++S+ W + K+ + + L+G K+DL +GS DV
Sbjct: 88 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDV 146
Query: 139 RYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQN 179
E ++ + ++EAS++ + + F ++ I+ N
Sbjct: 147 TKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 10 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 69 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 127
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K E D+ ++E SA T + V + F
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L QF ++ F+ + TI + E+ + L + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G L+VY +T ++++ H+ + + + + + L+ NK+DL R V D+ K+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AEENDLIFVEASAMTGE-NVEQAFLETAKKIYQN 179
A + ++ ++E SA NV++ F + + I Q
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK + E D+ ++E SA T E V + F
Sbjct: 130 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 11 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ P+T I L+G K+DL +D
Sbjct: 70 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLDLRDDKDTIE 128
Query: 138 ---------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
+ Y + A E + ++E SA+T ++ F E + +
Sbjct: 129 RLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 37 GDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 95
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 154
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 155 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 11 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ P+T I L+G K+DL +D
Sbjct: 70 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLDLRDDKDTIE 128
Query: 138 ---------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
+ Y + A E + ++E SA+T ++ F E + +
Sbjct: 129 RLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ P+T I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
+ Y + A E + ++E SA+T ++ F E + +
Sbjct: 128 RLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E + +
Sbjct: 37 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 95
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 154
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 155 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E + +
Sbjct: 13 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 72 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 130
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 131 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E + +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
Y L+ + + +++ ++ + W + ++ PNT I L+G K+DL +D
Sbjct: 69 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
+ Y + A+E + ++E SA+T ++ F E + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+ LLH F + F + T+ E T E+ ++I+L +WDT+G + V
Sbjct: 30 GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 88
Query: 82 RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y + L+ +DI+R T + L W + + PNT + L+G K DL
Sbjct: 89 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLV 147
Query: 135 ------SRDVRYDEAKKFAEE-NDLIFVEASAMTGEN 164
V YD+ A++ ++E SA+ EN
Sbjct: 148 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+ LLH F + F + T+ E T E+ ++I+L +WDT+G + V
Sbjct: 14 GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y + L+ +DI+R T + L W + + PNT + L+G K DL
Sbjct: 73 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLV 131
Query: 135 ------SRDVRYDEAKKFAEE-NDLIFVEASAMTGEN 164
V YD+ A++ ++E SA+ EN
Sbjct: 132 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+ LLH F + F + T+ E T E+ ++I+L +WDT+G + V
Sbjct: 35 GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 93
Query: 82 RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y + L+ +DI+R T + L W + + PNT + L+G K DL
Sbjct: 94 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLV 152
Query: 135 ------SRDVRYDEAKKFAEE-NDLIFVEASAMTGEN 164
V YD+ A++ ++E SA+ EN
Sbjct: 153 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAG E + +
Sbjct: 15 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR 73
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
Y LM + I + S N W + K+ PN I L+GNK DL R
Sbjct: 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 132
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
+ AK K E D+ ++E SA T + V + F
Sbjct: 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD G GK+ LL F + F T+ + + +V G+ + L IWDTAGQ+ + +
Sbjct: 41 GDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQDDYDRLR 99
Query: 82 RSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLE------- 133
+Y A+ L+ +D+T +++ N + W + + I ++G K DL
Sbjct: 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVN 158
Query: 134 -----GSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAK 174
G V Y ++ A + ++E SA +NV F E A+
Sbjct: 159 KLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 35/188 (18%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 12 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDITRR--------------------STYNHLSSWLTDTKNLTNPNT 121
Y G DIT R S N + W + ++ PNT
Sbjct: 71 PLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHC-PNT 129
Query: 122 VIFLIGNKMDLEGSRD------------VRYDEAKKFAEENDLI-FVEASAMTGENVEQA 168
I L+G K+DL +D + Y + A+E + ++E SA+T ++
Sbjct: 130 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 189
Query: 169 FLETAKKI 176
F E + +
Sbjct: 190 FDEAIRAV 197
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G GVGKS L+ +F + F T+ + ++I LQI DT G +F A+
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQ 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVR 139
R ++VY IT R + L + + I L+GNK D SR+V+
Sbjct: 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ 128
Query: 140 YDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171
EA+ A F+E SA NV++ F E
Sbjct: 129 SSEAEALARTWKCAFMETSAKLNHNVKELFQE 160
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+ GK+ +L + + P+ E T +E ++++L +WDT+G + V
Sbjct: 34 GDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 92
Query: 82 RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDL-------- 132
Y + L+ +DI+R T + L W T+ + P+T + LIG K DL
Sbjct: 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLM 151
Query: 133 ----EGSRDVRYDE----AKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+ + Y++ AK+ E I++E SA T E + TA + N
Sbjct: 152 ELSHQKQAPISYEQGCAIAKQLGAE---IYLEGSAFTSEKSIHSIFRTASMLCLN 203
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+ GK+ +L + + P+ E T +E ++++L +WDT+G + V
Sbjct: 18 GDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 76
Query: 82 RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDL-------- 132
Y + L+ +DI+R T + L W T+ + P+T + LIG K DL
Sbjct: 77 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLM 135
Query: 133 ----EGSRDVRYDE----AKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+ + Y++ AK+ E I++E SA T E + TA + N
Sbjct: 136 ELSHQKQAPISYEQGCAIAKQLGAE---IYLEGSAFTSEKSIHSIFRTASMLCLN 187
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+ GK+ +L + + P+ E T +E ++++L +WDT+G + V
Sbjct: 17 GDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDL-------- 132
Y + L+ +DI+R T + L W T+ + P+T + LIG K DL
Sbjct: 76 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLM 134
Query: 133 ----EGSRDVRYDE----AKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
+ + Y++ AK+ E I++E SA T E + TA + N
Sbjct: 135 ELSHQKQAPISYEQGCAIAKQLGAE---IYLEGSAFTSEKSIHSIFRTASMLCLN 186
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD+ VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV- 80
GD GVGK+ L F ++ D +G + R + V GE L + DT E+
Sbjct: 11 GDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW 69
Query: 81 -TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV 138
S +G + ++VY I R ++ S + + V I L+GNK DL R+V
Sbjct: 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREV 129
Query: 139 RYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
+E + A D F+E SA NV + F
Sbjct: 130 SVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+ L+ +T + + T F ++ V G ++LQ+ DTAGQ+ F +
Sbjct: 27 GDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDEFDKLR 85
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLE------- 133
Y L+ + + S++ ++S W+ + + P I L+G + DL
Sbjct: 86 PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILVGTQSDLREDVKVLI 144
Query: 134 -----GSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAF 169
+ V + AK AEE ++E SA+T +N+++ F
Sbjct: 145 ELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 17 GDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 76 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 134
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 135 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L QF F+ TI +F + IEV L+I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
G ++VY + + ++ + + V + L+GNK+DLE R+V E +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
AEE F+E SA + V++ F E +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 11 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 69
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 70 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 128
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 129 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 172
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 13 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 72 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 130
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 131 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 17 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 75
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 76 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 134
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 135 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 20 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 78
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 79 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 137
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 138 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 181
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 12 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 71 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 129
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 130 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 13 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 71
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 72 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 130
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 131 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 14 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 73 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 131
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 132 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 12 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 70
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 71 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 129
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 130 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL + F + T+ + + V G++ L ++DTAGQE + +
Sbjct: 25 GDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQEDYDRLR 83
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + +++ ++ W+ + K PN LIG ++DL
Sbjct: 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLA 142
Query: 135 ------SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
+ + ++ +K A+E +VE SA+T + ++ F E I
Sbjct: 143 RLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + + + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
G GVGKS L F + P+ HT R I V GE+ L ++D Q+ R
Sbjct: 14 GAPGVGKSALARIFGGVEDGPEAEAAGHTY-----DRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRD 137
+ ++VY +T + ++ S + + V I L+GNK DL SR+
Sbjct: 69 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 128
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
V DE + A D F+E SA NV+ F ++I
Sbjct: 129 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
G GVGKS L F + P+ HT R I V GE+ L ++D Q+ R
Sbjct: 14 GAPGVGKSALARIFGGVEDGPEAEAAGHTY-----DRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRD 137
+ ++VY +T + ++ S + + V I L+GNK DL SR+
Sbjct: 69 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 128
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
V DE + A D F+E SA NV+ F ++I
Sbjct: 129 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
G GVGKS L F + P+ HT R I V GE+ L ++D Q+ R
Sbjct: 9 GAPGVGKSALARIFGGVEDGPEAEAAGHTY-----DRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRD 137
+ ++VY +T + ++ S + + V I L+GNK DL SR+
Sbjct: 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 123
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
V DE + A D F+E SA NV+ F ++I
Sbjct: 124 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L + DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + + + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 22 GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQER 76
G+ GVGKS L + F DC +G + R + V GE I L +W+ G+
Sbjct: 44 GEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENE 102
Query: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGS 135
+ + + L+VY IT R+++ S + + I L+GNK DL
Sbjct: 103 W--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 160
Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
R+V E + A D F+E SA NV++ F +++
Sbjct: 161 REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T K + T+ + ++ + GE L ++DTAGQE + +
Sbjct: 10 GDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAG E + +
Sbjct: 14 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLEDYDRLR 72
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 73 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 131
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 132 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAG E + +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLEDYDRLR 68
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
Y L+ + + S++ ++ W+ + + P T L+G ++DL
Sbjct: 69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
+ + + A+K A + + +VE SA+T + ++ F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 16/162 (9%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
GD GK+CLL ++ +F P+ E +EV G +++L +WDTAGQE + +
Sbjct: 17 GDGACGKTCLLIVNSKGQF-PEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLR 75
Query: 82 RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL-------- 132
Y + L+ + I S N W+ + + I L+G K+DL
Sbjct: 76 PLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVGCKVDLRNDPQTIE 134
Query: 133 ----EGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAF 169
EG + V E + A++ + E SA TG V + F
Sbjct: 135 QLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 22 GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQER 76
G+ GVGKS L + F DC +G + R + V GE I L +W+ G+
Sbjct: 13 GEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENE 71
Query: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGS 135
+ + + L+VY IT R+++ S + + I L+GNK DL
Sbjct: 72 W--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 129
Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
R+V E + A D F+E SA NV++ F +++
Sbjct: 130 REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 7/153 (4%)
Query: 22 GDMGVGKSCLLHQFT-EQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQERF 77
G+ GVGKS L + F M +G + R + V GE I L +W+ G+ +
Sbjct: 13 GEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW 72
Query: 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSR 136
+ + L+VY IT R+++ S + + I L+GNK DL R
Sbjct: 73 --LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR 130
Query: 137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
+V E + A D F+E SA NV++ F
Sbjct: 131 EVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 7/153 (4%)
Query: 22 GDMGVGKSCLLHQFT-EQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQERF 77
G+ GVGKS L + F M +G + R + V GE I L +W+ G+ +
Sbjct: 13 GEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW 72
Query: 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSR 136
+ + L+VY IT R+++ S + + I L+GNK DL R
Sbjct: 73 --LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR 130
Query: 137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
+V E + A D F+E SA NV++ F
Sbjct: 131 EVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 28 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
KS L+ +F + F TI + ++I LQI DT G +F A+ R
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 88 AAGALMVYDITRRSTYNHLSSWLTDTKNL--TNPNTVIFLIGNKMDLEGSRDVRYDEAKK 145
++V+ +T + + L + + + + L+GNK D E R+V EA+
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 146 FAEENDLIFVEASAMTGENVEQAF-----LETAKKIYQNIKDGK 184
A+E F+E SA NV++ F LET + + NI DGK
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNI-DGK 181
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
G GK+ +L++ + + P TIG T V + I +WD GQ+R R++ R Y
Sbjct: 27 GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDL 132
YR G + V D RS + N ++L+ NK DL
Sbjct: 82 YRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
G GK+ +L++ + + P TIG T V + I +WD GQ+R R++ R Y
Sbjct: 10 GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 64
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKN---LTNPNTVIFLIGNKMDL 132
YR G + V D RS + N L N ++F NK DL
Sbjct: 65 YRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF--ANKQDL 113
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
G GK+ +L++ + + P TIG T V + I +WD GQ+R R++ R Y
Sbjct: 27 GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKN---LTNPNTVIFLIGNKMDL 132
YR G + V D RS + N L N ++F NK DL
Sbjct: 82 YRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF--ANKQDL 130
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 22 GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQER 76
G+ G GK+ LL Q T++ + T+G++ I++ ++ + L +WD AG+E
Sbjct: 9 GNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68
Query: 77 FRAVTRSYYRGAAGALMVYDITR-RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
F + + A L VYD+++ ++ + WL + K + + VI L+G +D+
Sbjct: 69 FYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHLDV 124
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 22 GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQER 76
G+ G GK+ LL Q T++ + T+G++ I++ ++ + L +WD AG+E
Sbjct: 7 GNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 66
Query: 77 FRAVTRSYYRGAAGALMVYDITR-RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
F + + A L VYD+++ ++ + WL + K + + VI L+G +D+
Sbjct: 67 FYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHLDV 122
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ ++ +F D T+G F R I IKL WD GQ RFR++ Y R
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCR 89
Query: 87 GAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
G + + + D + ++ N L + L + P + ++GNK DL G+ D
Sbjct: 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP---VLVLGNKRDLPGALD 141
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ ++ +F D T+G F R +V + ++IWD GQ RFR++ Y R
Sbjct: 34 GKTTFVNVIASGQFSEDMIPTVG--FNMR--KVTKGNVTIKIWDIGGQPRFRSMWERYCR 89
Query: 87 GAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
G + + D R ++ N L + L + P + ++GNK DL + D
Sbjct: 90 GVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP---VLVLGNKRDLPNALD 141
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ ++ +F D T+G F R I IKL WD GQ RFR++ Y R
Sbjct: 43 GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCR 98
Query: 87 GAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
G + + + D + ++ N L + L D L + ++GNK DL G+ D
Sbjct: 99 GVSAIVYMVDAADQEKIEASKNELHN-LLDKPQLQ--GIPVLVLGNKRDLPGALD 150
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R Y
Sbjct: 332 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 386
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
Y G G + V D R + L N + +I + NK DL
Sbjct: 387 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R YY
Sbjct: 12 GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 66
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
G G + V D R + L N + +I + NK DL
Sbjct: 67 GTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R YY
Sbjct: 25 GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 79
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
G G + V D R + L N + +I + NK DL
Sbjct: 80 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R YY
Sbjct: 24 GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 78
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
G G + V D R + L N + +I + NK DL
Sbjct: 79 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R YY
Sbjct: 12 GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 66
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
G G + V D R + L N + +I + NK DL
Sbjct: 67 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L +F + P T+G F + +E G KL IWD GQ+ R+ R+Y+
Sbjct: 28 GKTTILKKFNGEDIDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 82
Query: 87 GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEG---SRDVR 139
G + V D R L S L + + L +IF NK DL G S +R
Sbjct: 83 STDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGALSSNAIR 139
Query: 140 YDEAKKFAEENDLIFVEASAMTGENV 165
+ SA+TGEN+
Sbjct: 140 EVLELDSIRSHHWCIQGCSAVTGENL 165
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R YY
Sbjct: 12 GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 66
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
G G + V D R + L N + +I + NK DL
Sbjct: 67 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L +F + P T+G F + +E G KL IWD GQ+ R+ R+Y+
Sbjct: 30 GKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 87 GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
G + V D R L S L + + L +IF NK DL G+
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGA 134
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L +F + P T+G F + +E G KL IWD GQ+ R+ R+Y+
Sbjct: 30 GKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 87 GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
G + V D R L S L + + L +IF NK DL G+
Sbjct: 85 STDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGA 134
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L +F + P T+G F + +E G KL IWD GQ+ R+ R+Y+
Sbjct: 30 GKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 87 GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
G + V D R L S L + + L +IF NK DL G+
Sbjct: 85 STDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGA 134
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 23/156 (14%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
G GK+ +L++ + + P TIG T + + +KL +WD GQ R R Y
Sbjct: 28 GAGKTTILYRLQIGEVVTTKP-TIGFNVET----LSYKNLKLNVWDLGGQTSIRPYWRCY 82
Query: 85 YRGAAGALMVYDIT---RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
Y A + V D T R ST + + + L + ++F NK D G+
Sbjct: 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF--ANKQDQPGAL----- 135
Query: 142 EAKKFAEENDLI--------FVEASAMTGENVEQAF 169
A + ++E +L+ V +SA+ GE + +
Sbjct: 136 SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
G GK+ +L++ + + P TIG F ++ I +WD GQ+R R++ R Y
Sbjct: 27 GAGKTTVLYKLKLGEVITTIP-TIG--FNVECVQYC--NISFTVWDVGGQDRIRSLWRHY 81
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKN---LTNPNTVIFLIGNKMDL 132
Y G + V D RS + N L N ++F NK DL
Sbjct: 82 YCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVF--ANKQDL 130
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 22 GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77
G+ GVGKS L F + P+ P + R I V E++ L ++D Q
Sbjct: 30 GESGVGKSTLAGTFGGLQGDSAHEPENPE----DTYERRIMVDKEEVTLVVYDIWEQGDA 85
Query: 78 RAVTRSYYRGAAGA-LMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLEGS 135
R + A L+V+ +T R +++ + L + + + + L+GNK DL S
Sbjct: 86 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145
Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
R+V +E + A +E SA N + F ++I
Sbjct: 146 REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P T+G T V + +K +WD G ++ R + R YY
Sbjct: 25 GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYT 79
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
G G + V D R + L N + +I + NK DL
Sbjct: 80 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P T+G T V + +K +WD G ++ R + R YY
Sbjct: 14 GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYT 68
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
G G + V D R + L N + +I + NK DL
Sbjct: 69 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P T+G T V + +K +WD G ++ R + R YY
Sbjct: 15 GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYT 69
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
G G + V D R + L N + +I + NK DL
Sbjct: 70 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y++
Sbjct: 28 GKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 82
Query: 87 GAAGALMVYDITRRSTYN 104
G + V D R N
Sbjct: 83 NTQGLIFVVDSNDRERVN 100
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R YY+
Sbjct: 29 GKTSILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYYQ 83
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDL 132
+ V D R L N N ++ + NK DL
Sbjct: 84 NTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDL 130
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y++
Sbjct: 29 GKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 83
Query: 87 GAAGALMVYDITRRSTYN 104
G + V D R N
Sbjct: 84 NTQGLIFVVDSNDRERVN 101
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y++
Sbjct: 12 GKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 66
Query: 87 GAAGALMVYDITRRSTYN 104
G + V D R N
Sbjct: 67 NTQGLIFVVDSNDRERVN 84
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V + I +WD GQ+R R + + Y++
Sbjct: 29 GKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNICFTVWDVGGQDRIRPLWKHYFQ 83
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP-NTVIFLIGNKMDL 132
G + V D R ++ L + + V+ L NK DL
Sbjct: 84 NTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDL 130
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L+QF M + HT G+ + E+ + +WD GQE R+ +YY
Sbjct: 28 GKTTILYQF----LMNEVVHT-SPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYS 82
Query: 87 GAAGALMVYD--------ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
++V D IT+ Y L+ ++L +IF NK D++G
Sbjct: 83 NTEFIILVVDSIDRERLAITKEELYRMLAH-----EDLRKAAVLIF--ANKQDMKG 131
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 19/159 (11%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ LL Q + D H + G I V + KL +WD GQ + R RSY+
Sbjct: 16 GKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFE 70
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKK 145
+ V D R + LT+ + V + + NK DL + A +
Sbjct: 71 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL-----LTAAPASE 125
Query: 146 FAEENDLIFVE--------ASAMTGENVEQAFLETAKKI 176
AE +L + SA+TGE V+ K +
Sbjct: 126 IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ LL Q + D H + G I V + KL +WD GQ + R RSY+
Sbjct: 28 GKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFE 82
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLEGSRDVRYDEAKK 145
+ V D R + LT+ + V LI NK DL + A +
Sbjct: 83 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL-----LTAAPASE 137
Query: 146 FAEENDLIFVE--------ASAMTGENVE 166
AE +L + SA+TGE V+
Sbjct: 138 IAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ LL Q + D H + G I V + KL +WD GQ + R RSY+
Sbjct: 29 GKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFE 83
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLEGSRDVRYDEAKK 145
+ V D R + LT+ + V LI NK DL + A +
Sbjct: 84 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL-----LTAAPASE 138
Query: 146 FAEENDLIFVE--------ASAMTGENVE 166
AE +L + SA+TGE V+
Sbjct: 139 IAEGLNLHTIRDRVWQIQSCSALTGEGVQ 167
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y
Sbjct: 175 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHY 229
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP---NTVIFLIGNKMDL 132
++ G + V D R N L + L + V+ + NK DL
Sbjct: 230 FQNTQGLIFVVDSNDRERVNEAREEL--MRMLAEDELRDAVLLVFANKQDL 278
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V I +WD GQ++ R + R YY
Sbjct: 29 GKTTILYKVKLGEVVTTIP-TIGFNVET----VEFRNISFTVWDVGGQDKIRPLWRHYYS 83
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDL 132
G + V D R + L N + +I + NK DL
Sbjct: 84 NTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L +F + P T+G F + +E G KL IWD G + R+ R+Y+
Sbjct: 13 GKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGLKSLRSYWRNYFE 67
Query: 87 GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
G + V D R L S L + + L +IF NK DL G+
Sbjct: 68 STDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGA 117
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L+QF+ + + P G+ + E+ + +WD GQE R+ +YY
Sbjct: 33 GKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 87
Query: 87 GAAGALMVYD--------ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
++V D +TR Y L+ ++L +IF NK D++
Sbjct: 88 NTEFVIVVVDSTDRERISVTREELYKMLAH-----EDLRKAGLLIF--ANKQDVK 135
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L+QF+ + + P G+ + E+ + +WD GQE R+ +YY
Sbjct: 34 GKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 88
Query: 87 GAAGALMVYD--------ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
++V D +TR Y L+ ++L +IF NK D++
Sbjct: 89 NTEFVIVVVDSTDRERISVTREELYKMLAH-----EDLRKAGLLIF--ANKQDVK 136
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y++
Sbjct: 32 GKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 86
Query: 87 GAAGALMVYDITRR 100
G + V D R
Sbjct: 87 NTQGLIFVVDSNDR 100
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L+QF+ + + P G+ + E+ + +WD GQE R+ +YY
Sbjct: 28 GKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 82
Query: 87 GAAGALMVYD--------ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
++V D +TR Y L+ ++L +IF NK D++
Sbjct: 83 NTEFVIVVVDSTDRERISVTREELYKMLAH-----EDLRKAGLLIF--ANKQDVK 130
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L+QF+ + + P G+ + E+ + +WD GQE R+ +YY
Sbjct: 28 GKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 82
Query: 87 GAAGALMVYD--------ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
++V D +TR Y L+ ++L +IF NK D++
Sbjct: 83 NTEFVIVVVDSTDRERISVTREELYKMLAH-----EDLRKAGLLIF--ANKQDVK 130
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 6/159 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT--RIIEVHGEKIKLQIWDTAGQERFRA 79
G+ GVGKS L F D H + T R I V E++ L ++D Q
Sbjct: 19 GESGVGKSTLAGTFG--GLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG 76
Query: 80 VTRSYYRGAAGA-LMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLEGSRD 137
+ + A L+V+ +T R +++ + L + + + + L+GNK DL SR+
Sbjct: 77 WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE 136
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
V +E + A +E SA N + F ++I
Sbjct: 137 VSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
G GK+ +L++ + + P TIG T V + +K Q+WD GQ R R Y
Sbjct: 12 GAGKTTILYRLQVGEVVTTIP-TIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCY 66
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLT---DTKNLTNPNTVIFLIGNKMDLE 133
Y + V D R S L + + L V+F NK D+E
Sbjct: 67 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF--ANKQDME 116
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
G G GKS L +F ++F+ + + + + H + + L++ DTA + R
Sbjct: 28 GRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDH-QPVHLRVMDTADLDTPRNCE 86
Query: 82 RSYYRGAAGALMVYDITRRSTYNHLSSWL---TDTKNLTNPNTVIFLIGNKMDLEGSRDV 138
R Y A L+VY + R +++ SS+L T + L+GNK+D+ R V
Sbjct: 87 R-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV 145
Query: 139 RYDEAKKFAEENDLIFVEASA-MTGENVEQAFLETAKK 175
E A +F E SA + E+V+ F E ++
Sbjct: 146 TKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 6/159 (3%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT--RIIEVHGEKIKLQIWDTAGQERFRA 79
G+ GVGKS L F D H + T R I V E++ L ++D Q
Sbjct: 9 GESGVGKSTLAGTFG--GLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG 66
Query: 80 VTRSYYRGAAGA-LMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLEGSRD 137
+ + A L+V+ +T R +++ + L + + + + L+GNK DL SR+
Sbjct: 67 WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE 126
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
V +E + A +E SA N + F ++I
Sbjct: 127 VSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V + I +WD G ++ R + R Y++
Sbjct: 14 GKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGLDKIRPLWRHYFQ 68
Query: 87 GAAGALMVYDITRRSTYN 104
G + V D R N
Sbjct: 69 NTQGLIFVVDSNDRERVN 86
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 19/159 (11%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ LL Q + D H + G I V + KL +WD G + R RSY+
Sbjct: 16 GKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFE 70
Query: 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKK 145
+ V D R + LT+ + V + + NK DL + A +
Sbjct: 71 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL-----LTAAPASE 125
Query: 146 FAEENDLIFVE--------ASAMTGENVEQAFLETAKKI 176
AE +L + SA+TGE V+ K +
Sbjct: 126 IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y++
Sbjct: 41 GKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNICFTVWDVGGQDKIRPLWRHYFQ 95
Query: 87 GAAGALMVYD 96
G + V D
Sbjct: 96 NTQGLIFVVD 105
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 10/112 (8%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
G GK+ +L++ + + P TIG T V + +K Q+WD G R R Y
Sbjct: 14 GAGKTTILYRLQVGEVVTTIP-TIGFNVET----VTYKNLKFQVWDLGGLTSIRPYWRCY 68
Query: 85 YRGAAGALMVYDITRRSTYNHLSSWLT---DTKNLTNPNTVIFLIGNKMDLE 133
Y + V D R S L + + L V+F NK D+E
Sbjct: 69 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF--ANKQDME 118
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 25 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
G GK+ +L++ + + P TIG T V + +K Q+WD G R R Y
Sbjct: 17 GAGKTTILYRLQVGEVVTTIP-TIGFNVET----VTYKNLKFQVWDLGGLTSIRPYWRCY 71
Query: 85 YRGAAGALMVYD 96
Y + V D
Sbjct: 72 YSNTDAVIYVVD 83
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 26/160 (16%)
Query: 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK------------LQIW 69
GD GK+ LL Q + F P T G+ T+ IK W
Sbjct: 48 GDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK----QAPNIKGLENDDELKECLFHFW 103
Query: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
D GQE A + + ++ +++ D +R + H WL + + VI ++ NK
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKHY--WLRHIEKYGGKSPVI-VVMNK 159
Query: 130 MDLEGSRDVRYDEAKKFAEENDLI---FVEASAMTGENVE 166
+D S ++ E KK E I F S G+ VE
Sbjct: 160 IDENPSYNI---EQKKINERFPAIENRFHRISCKNGDGVE 196
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 52 FGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------- 100
G I + + ++D +GQ R+R + YY+ + V D + R
Sbjct: 55 IGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELD 114
Query: 101 STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
+ NH D K+ P I NKMDL
Sbjct: 115 TLLNH-----PDIKHRRIP---ILFFANKMDL 138
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 14/135 (10%)
Query: 58 EVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN-- 115
EV G K + ++ GQ + A + RG G + V D S N L + +N
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD----SAPNRLRANAESMRNMR 123
Query: 116 -------LTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
LT + I + NK DL + V A E +EA A G+ V +
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRA-VVDPEGKFPVLEAVATEGKGVFET 182
Query: 169 FLETAKKIYQNIKDG 183
E ++ + + G
Sbjct: 183 LKEVSRLVLARVAGG 197
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT---RRSTYNHLSSWLTDTKNLTNPN 120
I ++WD GQ R R Y+ + V D T R H L D L
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL 125
Query: 121 TVIFLIGNKMDL 132
+IF NK DL
Sbjct: 126 LLIF--ANKQDL 135
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 14/135 (10%)
Query: 58 EVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN-- 115
EV G K + ++ GQ + A + RG G + V D S N L + +N
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD----SAPNRLRANAESXRNXR 123
Query: 116 -------LTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
LT + I + NK DL + V A E +EA A G+ V +
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLPDALPVEXVRA-VVDPEGKFPVLEAVATEGKGVFET 182
Query: 169 FLETAKKIYQNIKDG 183
E ++ + + G
Sbjct: 183 LKEVSRLVLARVAGG 197
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 32 LHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQ----------IWD---TAGQERFR 78
+H F + P +G E R++EV+GEK L +W+ T G+ +
Sbjct: 59 VHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWC 118
Query: 79 AVTRSYYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
V++ Y VY I R S Y HL + + + +P T + + K DL+
Sbjct: 119 KVSKEPY--LCPNRKVYGINRGCSEYPHLRGCYS-SHIVLDPETDVLKVSEKDDLD 171
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 56/161 (34%), Gaps = 36/161 (22%)
Query: 46 HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH 105
H I ++ I+E HG + Q YR + +Y I R+ ++H
Sbjct: 145 HNILKKYHQYIVECHGITLLPQFL-------------GMYRLNVDGVEIYVIVTRNVFSH 191
Query: 106 LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------NDLIFVEASA 159
S + K DL+GS R K+ A+E ND I
Sbjct: 192 RLS-----------------VYRKYDLKGSTVAREASDKEKAKELPTLKDNDFINEGQKI 234
Query: 160 MTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERG 200
+N ++ FLE KK + + KL G+ ER
Sbjct: 235 YIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERA 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,122,844
Number of Sequences: 62578
Number of extensions: 232809
Number of successful extensions: 1126
Number of sequences better than 100.0: 355
Number of HSP's better than 100.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 357
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)