Query psy1169
Match_columns 218
No_of_seqs 147 out of 1781
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 16:23:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.1E-44 2.4E-49 253.9 22.4 180 8-187 2-182 (205)
2 KOG0092|consensus 100.0 9E-42 2E-46 238.4 19.1 170 13-182 3-172 (200)
3 KOG0078|consensus 100.0 7.5E-41 1.6E-45 238.0 23.6 175 9-183 6-180 (207)
4 KOG0094|consensus 100.0 1E-40 2.2E-45 233.2 20.7 166 14-179 21-187 (221)
5 KOG0098|consensus 100.0 2E-40 4.2E-45 230.0 21.3 181 11-191 2-182 (216)
6 KOG0097|consensus 100.0 3E-40 6.5E-45 219.5 20.5 211 8-218 4-215 (215)
7 KOG0087|consensus 100.0 1.6E-40 3.5E-45 235.3 20.3 183 8-190 7-189 (222)
8 KOG0086|consensus 100.0 1.5E-40 3.2E-45 223.4 18.8 211 8-218 2-214 (214)
9 KOG0080|consensus 100.0 8.4E-39 1.8E-43 216.6 19.8 170 10-179 6-176 (209)
10 cd04120 Rab12 Rab12 subfamily. 100.0 8.5E-38 1.8E-42 230.4 25.4 184 16-199 1-185 (202)
11 PLN03110 Rab GTPase; Provision 100.0 2.8E-37 6E-42 230.9 27.2 208 10-217 7-214 (216)
12 KOG0091|consensus 100.0 2.7E-38 5.9E-43 214.7 18.0 207 11-217 4-213 (213)
13 KOG0079|consensus 100.0 1E-38 2.2E-43 213.3 15.2 170 10-180 3-172 (198)
14 KOG0095|consensus 100.0 6.7E-38 1.4E-42 209.9 16.2 208 10-217 2-209 (213)
15 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-36 2.9E-41 222.0 24.0 168 12-180 3-170 (189)
16 KOG0394|consensus 100.0 1.7E-37 3.6E-42 215.0 17.6 168 12-179 6-180 (210)
17 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.1E-36 6.7E-41 223.2 23.7 172 16-187 1-178 (201)
18 KOG0093|consensus 100.0 2.4E-36 5.3E-41 201.7 17.2 176 8-183 14-189 (193)
19 cd04110 Rab35 Rab35 subfamily. 100.0 3.1E-35 6.7E-40 217.4 24.8 171 12-183 3-173 (199)
20 PLN03108 Rab family protein; P 100.0 7.3E-35 1.6E-39 217.0 26.5 180 12-191 3-182 (210)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1E-34 2.2E-39 217.4 25.7 168 11-180 9-191 (232)
22 cd04122 Rab14 Rab14 subfamily. 100.0 4E-35 8.8E-40 211.0 22.8 164 15-178 2-165 (166)
23 cd04111 Rab39 Rab39 subfamily. 100.0 1.2E-34 2.7E-39 215.7 25.7 188 14-201 1-190 (211)
24 cd04126 Rab20 Rab20 subfamily. 100.0 3.6E-35 7.7E-40 218.7 22.4 187 16-217 1-220 (220)
25 cd04125 RabA_like RabA-like su 100.0 1.4E-34 3.1E-39 212.3 24.7 167 16-182 1-167 (188)
26 cd04144 Ras2 Ras2 subfamily. 100.0 4.8E-35 1E-39 215.0 21.9 166 17-183 1-169 (190)
27 KOG0088|consensus 100.0 3.3E-36 7.2E-41 203.6 13.9 180 7-186 5-184 (218)
28 cd04112 Rab26 Rab26 subfamily. 100.0 1.3E-34 2.8E-39 212.9 23.4 190 16-217 1-191 (191)
29 cd01867 Rab8_Rab10_Rab13_like 100.0 1.3E-34 2.7E-39 208.7 22.6 166 13-178 1-166 (167)
30 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.4E-35 1.8E-39 211.6 21.6 164 12-177 2-180 (182)
31 cd04133 Rop_like Rop subfamily 100.0 9.9E-35 2.1E-39 210.0 20.2 160 16-177 2-173 (176)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.3E-34 7.1E-39 207.3 21.9 164 15-179 2-166 (172)
33 cd04127 Rab27A Rab27a subfamil 100.0 4.2E-34 9.2E-39 208.3 22.6 167 13-179 2-179 (180)
34 cd04109 Rab28 Rab28 subfamily. 100.0 6.9E-34 1.5E-38 212.6 24.2 164 16-179 1-168 (215)
35 PTZ00369 Ras-like protein; Pro 100.0 2.9E-34 6.4E-39 210.7 21.3 167 15-182 5-172 (189)
36 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 7.4E-34 1.6E-38 204.4 22.5 164 15-178 2-165 (166)
37 cd04117 Rab15 Rab15 subfamily. 100.0 7.4E-34 1.6E-38 203.4 22.2 160 16-175 1-160 (161)
38 cd01866 Rab2 Rab2 subfamily. 100.0 1E-33 2.2E-38 204.1 23.0 167 12-178 1-167 (168)
39 cd01865 Rab3 Rab3 subfamily. 100.0 1.2E-33 2.6E-38 203.2 23.0 162 16-177 2-163 (165)
40 cd04131 Rnd Rnd subfamily. Th 100.0 5.2E-34 1.1E-38 207.0 21.0 160 16-177 2-176 (178)
41 PF00071 Ras: Ras family; Int 100.0 7.8E-34 1.7E-38 203.5 21.2 161 17-177 1-161 (162)
42 cd01875 RhoG RhoG subfamily. 100.0 1.2E-33 2.7E-38 207.5 22.3 162 15-178 3-178 (191)
43 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.6E-33 5.5E-38 208.9 24.0 164 16-181 2-180 (222)
44 cd04119 RJL RJL (RabJ-Like) su 100.0 1.6E-33 3.5E-38 202.8 22.2 162 16-177 1-167 (168)
45 cd01868 Rab11_like Rab11-like. 100.0 3.1E-33 6.6E-38 201.0 22.7 163 14-176 2-164 (165)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.7E-33 5.8E-38 204.0 21.5 162 16-178 1-167 (182)
47 cd01864 Rab19 Rab19 subfamily. 100.0 6.2E-33 1.3E-37 199.4 22.1 162 14-175 2-164 (165)
48 cd04132 Rho4_like Rho4-like su 100.0 5.9E-33 1.3E-37 203.5 22.3 163 16-180 1-170 (187)
49 cd04113 Rab4 Rab4 subfamily. 100.0 6.5E-33 1.4E-37 198.5 21.7 160 16-175 1-160 (161)
50 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.3E-33 7.1E-38 202.5 20.1 160 15-176 1-174 (175)
51 PLN03071 GTP-binding nuclear p 100.0 8.1E-33 1.8E-37 207.0 21.7 168 9-179 7-174 (219)
52 cd04118 Rab24 Rab24 subfamily. 100.0 2.8E-32 6E-37 200.9 24.1 164 16-180 1-169 (193)
53 cd04136 Rap_like Rap-like subf 100.0 8.1E-33 1.7E-37 198.3 20.4 160 16-176 2-162 (163)
54 smart00175 RAB Rab subfamily o 100.0 2.2E-32 4.9E-37 196.2 22.7 163 16-178 1-163 (164)
55 KOG0081|consensus 100.0 4.6E-35 1E-39 198.2 8.1 174 10-183 4-187 (219)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.3E-32 7.1E-37 196.4 22.8 162 17-178 2-166 (170)
57 cd00877 Ran Ran (Ras-related n 100.0 1.9E-32 4.1E-37 197.0 21.1 160 16-178 1-160 (166)
58 cd04106 Rab23_lke Rab23-like s 100.0 2.2E-32 4.7E-37 195.9 21.3 159 16-175 1-161 (162)
59 cd04175 Rap1 Rap1 subgroup. T 100.0 2.5E-32 5.3E-37 196.1 20.8 160 16-176 2-162 (164)
60 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.9E-32 8.6E-37 196.2 21.8 162 15-176 2-168 (170)
61 PLN03118 Rab family protein; P 100.0 1.7E-31 3.7E-36 199.2 25.9 171 8-179 7-179 (211)
62 cd04116 Rab9 Rab9 subfamily. 100.0 5.6E-32 1.2E-36 195.4 22.5 162 13-175 3-169 (170)
63 cd04176 Rap2 Rap2 subgroup. T 100.0 3E-32 6.5E-37 195.5 20.0 160 16-176 2-162 (163)
64 cd04140 ARHI_like ARHI subfami 100.0 4.6E-32 1E-36 194.9 20.7 159 16-175 2-163 (165)
65 cd04124 RabL2 RabL2 subfamily. 100.0 8.8E-32 1.9E-36 192.7 21.9 160 16-179 1-160 (161)
66 cd01860 Rab5_related Rab5-rela 100.0 1.2E-31 2.7E-36 192.2 22.5 162 15-176 1-162 (163)
67 cd01871 Rac1_like Rac1-like su 100.0 4.7E-32 1E-36 196.3 20.2 158 16-175 2-173 (174)
68 cd01861 Rab6 Rab6 subfamily. 100.0 1.3E-31 2.8E-36 191.7 21.7 160 16-175 1-160 (161)
69 cd04134 Rho3 Rho3 subfamily. 100.0 6E-32 1.3E-36 198.4 20.3 161 16-178 1-175 (189)
70 smart00173 RAS Ras subfamily o 100.0 9.8E-32 2.1E-36 193.0 20.8 161 16-177 1-162 (164)
71 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.7E-31 3.8E-36 191.1 21.3 160 15-176 1-161 (162)
72 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.9E-31 4E-36 191.4 21.4 161 15-176 2-163 (164)
73 smart00176 RAN Ran (Ras-relate 100.0 2.2E-31 4.9E-36 195.9 20.8 156 21-179 1-156 (200)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 4E-31 8.6E-36 189.8 21.7 160 16-176 1-163 (164)
75 cd04142 RRP22 RRP22 subfamily. 100.0 2.3E-31 5E-36 196.1 20.9 166 16-181 1-178 (198)
76 cd04123 Rab21 Rab21 subfamily. 100.0 4.9E-31 1.1E-35 188.7 22.0 161 16-176 1-161 (162)
77 cd01862 Rab7 Rab7 subfamily. 100.0 9.4E-31 2E-35 189.2 22.6 164 16-179 1-169 (172)
78 cd01873 RhoBTB RhoBTB subfamil 100.0 3.7E-31 8E-36 194.4 19.2 158 15-175 2-194 (195)
79 cd01892 Miro2 Miro2 subfamily. 100.0 3.3E-31 7.2E-36 191.1 18.6 163 13-177 2-166 (169)
80 cd04114 Rab30 Rab30 subfamily. 100.0 2.4E-30 5.2E-35 186.6 23.0 165 12-176 4-168 (169)
81 smart00174 RHO Rho (Ras homolo 100.0 5.1E-31 1.1E-35 191.1 19.4 159 18-178 1-173 (174)
82 cd04143 Rhes_like Rhes_like su 100.0 7.2E-31 1.6E-35 199.2 20.9 160 16-176 1-170 (247)
83 cd04103 Centaurin_gamma Centau 100.0 6.7E-31 1.4E-35 187.2 19.0 153 16-175 1-157 (158)
84 cd04146 RERG_RasL11_like RERG/ 100.0 4.9E-31 1.1E-35 189.6 18.0 160 17-177 1-164 (165)
85 cd01863 Rab18 Rab18 subfamily. 100.0 2.6E-30 5.6E-35 185.0 21.1 159 16-175 1-160 (161)
86 cd04148 RGK RGK subfamily. Th 100.0 2.6E-30 5.6E-35 193.8 21.9 162 16-179 1-165 (221)
87 cd04177 RSR1 RSR1 subgroup. R 100.0 2.8E-30 6.1E-35 186.2 21.0 161 16-177 2-164 (168)
88 cd00154 Rab Rab family. Rab G 100.0 4.2E-30 9E-35 183.0 21.4 158 16-173 1-158 (159)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.7E-30 3.8E-35 188.1 19.7 156 16-173 1-170 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 7.1E-30 1.5E-34 185.0 19.8 159 16-176 1-173 (174)
91 cd04139 RalA_RalB RalA/RalB su 100.0 2.3E-29 4.9E-34 180.5 21.3 162 16-178 1-163 (164)
92 cd00876 Ras Ras family. The R 100.0 2.8E-29 6E-34 179.3 20.2 158 17-175 1-159 (160)
93 KOG0083|consensus 100.0 8.7E-32 1.9E-36 177.3 6.2 161 19-179 1-162 (192)
94 cd04147 Ras_dva Ras-dva subfam 100.0 5E-29 1.1E-33 184.2 20.5 161 17-178 1-164 (198)
95 KOG0395|consensus 100.0 2.7E-29 6E-34 183.5 17.5 164 14-178 2-166 (196)
96 cd04137 RheB Rheb (Ras Homolog 100.0 3.3E-28 7.2E-33 177.2 21.3 163 16-179 2-165 (180)
97 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.4E-29 3E-34 181.8 13.3 153 17-174 1-163 (164)
98 cd01870 RhoA_like RhoA-like su 100.0 2.5E-28 5.4E-33 177.1 20.1 159 16-176 2-174 (175)
99 cd04149 Arf6 Arf6 subfamily. 100.0 1E-28 2.2E-33 177.9 17.5 155 13-174 7-167 (168)
100 cd04129 Rho2 Rho2 subfamily. 100.0 2.7E-28 5.9E-33 178.7 20.1 162 16-179 2-175 (187)
101 PLN00223 ADP-ribosylation fact 100.0 2.6E-28 5.6E-33 177.7 19.1 159 13-178 15-179 (181)
102 cd04158 ARD1 ARD1 subfamily. 100.0 2E-28 4.3E-33 176.6 18.3 156 17-179 1-163 (169)
103 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.7E-28 5.8E-33 178.1 18.8 164 15-181 3-174 (183)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.4E-29 1.4E-33 177.4 15.0 152 16-174 1-158 (159)
105 smart00177 ARF ARF-like small 100.0 1.1E-28 2.4E-33 178.9 15.9 157 13-176 11-173 (175)
106 cd00157 Rho Rho (Ras homology) 100.0 5.3E-28 1.2E-32 174.6 19.4 157 16-174 1-170 (171)
107 PTZ00132 GTP-binding nuclear p 100.0 1.6E-27 3.6E-32 178.3 22.6 167 10-179 4-170 (215)
108 KOG4252|consensus 100.0 2.1E-30 4.5E-35 179.0 6.2 184 9-193 14-197 (246)
109 cd04102 RabL3 RabL3 (Rab-like3 100.0 5.2E-28 1.1E-32 178.0 19.2 148 16-163 1-176 (202)
110 PTZ00133 ADP-ribosylation fact 100.0 1.3E-27 2.9E-32 174.2 19.2 160 13-179 15-180 (182)
111 cd01893 Miro1 Miro1 subfamily. 100.0 1.4E-27 3.1E-32 171.7 18.9 160 16-178 1-165 (166)
112 cd04154 Arl2 Arl2 subfamily. 100.0 1.1E-27 2.3E-32 173.5 17.9 155 13-174 12-172 (173)
113 KOG0393|consensus 100.0 9.3E-29 2E-33 177.0 11.2 165 13-179 2-181 (198)
114 PTZ00099 rab6; Provisional 100.0 6.2E-27 1.3E-31 169.3 20.0 174 38-218 3-176 (176)
115 cd04157 Arl6 Arl6 subfamily. 100.0 1.5E-27 3.2E-32 170.8 14.9 152 17-174 1-161 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1E-26 2.3E-31 168.4 17.7 154 14-174 14-173 (174)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 4.1E-27 9E-32 169.4 14.6 153 17-174 1-166 (167)
118 PLN00023 GTP-binding protein; 100.0 1.8E-26 3.9E-31 177.8 18.4 143 10-152 16-189 (334)
119 cd00879 Sar1 Sar1 subfamily. 100.0 2E-26 4.3E-31 169.3 17.8 156 13-175 17-189 (190)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2E-26 4.3E-31 164.7 15.9 152 17-174 1-159 (160)
121 cd04151 Arl1 Arl1 subfamily. 99.9 1.6E-26 3.5E-31 164.9 14.8 151 17-174 1-157 (158)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.5E-26 1.2E-30 163.5 16.8 152 17-174 1-166 (167)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 4.2E-26 9.1E-31 162.7 16.0 151 17-174 1-157 (158)
124 PF00025 Arf: ADP-ribosylation 99.9 5E-26 1.1E-30 164.8 16.2 158 12-176 11-175 (175)
125 KOG0073|consensus 99.9 2.8E-25 6.1E-30 151.5 17.7 163 12-179 13-180 (185)
126 smart00178 SAR Sar1p-like memb 99.9 1.7E-25 3.7E-30 163.4 17.8 156 13-175 15-183 (184)
127 cd04159 Arl10_like Arl10-like 99.9 8.7E-25 1.9E-29 155.5 17.0 152 17-174 1-158 (159)
128 TIGR00231 small_GTP small GTP- 99.9 4.4E-24 9.6E-29 151.6 18.9 157 15-172 1-159 (161)
129 cd01890 LepA LepA subfamily. 99.9 2.1E-24 4.6E-29 157.0 17.5 154 17-176 2-176 (179)
130 cd01878 HflX HflX subfamily. 99.9 1.9E-24 4.1E-29 160.5 16.8 156 13-175 39-203 (204)
131 KOG3883|consensus 99.9 3E-24 6.4E-29 144.9 15.8 176 13-188 7-186 (198)
132 COG1100 GTPase SAR1 and relate 99.9 1.2E-23 2.6E-28 157.8 21.0 169 15-183 5-191 (219)
133 cd01897 NOG NOG1 is a nucleola 99.9 2.6E-24 5.7E-29 154.9 16.7 155 17-176 2-167 (168)
134 cd01898 Obg Obg subfamily. Th 99.9 1.9E-24 4E-29 156.0 15.6 157 17-175 2-169 (170)
135 PRK12299 obgE GTPase CgtA; Rev 99.9 8.2E-24 1.8E-28 166.6 19.0 164 15-179 158-330 (335)
136 cd04155 Arl3 Arl3 subfamily. 99.9 6.5E-24 1.4E-28 153.6 16.3 155 13-174 12-172 (173)
137 cd04171 SelB SelB subfamily. 99.9 1.6E-23 3.4E-28 150.1 17.3 152 16-174 1-163 (164)
138 TIGR02528 EutP ethanolamine ut 99.9 6.5E-24 1.4E-28 148.8 13.8 134 17-173 2-141 (142)
139 cd00882 Ras_like_GTPase Ras-li 99.9 7.6E-23 1.7E-27 144.0 18.1 153 20-173 1-156 (157)
140 cd01891 TypA_BipA TypA (tyrosi 99.9 2.7E-23 5.8E-28 153.1 15.3 162 16-181 3-192 (194)
141 KOG0070|consensus 99.9 3E-23 6.5E-28 145.2 13.7 162 10-178 12-179 (181)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.4E-22 3E-27 145.8 17.6 157 17-177 2-166 (168)
143 PRK04213 GTP-binding protein; 99.9 2.4E-23 5.1E-28 154.3 12.4 153 13-178 7-193 (201)
144 TIGR02729 Obg_CgtA Obg family 99.9 2.3E-22 4.9E-27 158.3 18.2 161 14-176 156-328 (329)
145 cd01879 FeoB Ferrous iron tran 99.9 1.9E-22 4.1E-27 143.7 15.7 147 20-175 1-155 (158)
146 TIGR03156 GTP_HflX GTP-binding 99.9 1.6E-22 3.4E-27 160.6 16.8 154 14-175 188-350 (351)
147 PF08477 Miro: Miro-like prote 99.9 9.3E-23 2E-27 138.6 13.0 115 17-131 1-119 (119)
148 KOG1673|consensus 99.9 7.5E-23 1.6E-27 138.5 11.5 165 14-179 19-188 (205)
149 KOG0075|consensus 99.9 5.5E-23 1.2E-27 137.8 10.6 158 14-177 19-182 (186)
150 TIGR00436 era GTP-binding prot 99.9 6.9E-22 1.5E-26 152.5 17.3 153 17-176 2-163 (270)
151 cd01881 Obg_like The Obg-like 99.9 2.7E-22 5.8E-27 145.4 13.6 155 20-175 1-175 (176)
152 PF02421 FeoB_N: Ferrous iron 99.9 1.4E-22 3.1E-27 141.8 11.3 148 16-172 1-156 (156)
153 PRK03003 GTP-binding protein D 99.9 5.2E-22 1.1E-26 164.1 16.4 181 13-199 209-407 (472)
154 KOG0071|consensus 99.9 1.6E-21 3.5E-26 129.8 14.5 156 14-176 16-177 (180)
155 cd01889 SelB_euk SelB subfamil 99.9 9.8E-22 2.1E-26 144.6 14.6 158 16-177 1-186 (192)
156 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.4E-21 5.2E-26 137.7 16.0 146 16-176 2-156 (157)
157 cd00881 GTP_translation_factor 99.9 2.2E-21 4.9E-26 142.0 16.2 154 17-176 1-186 (189)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.5E-21 7.5E-26 157.0 18.8 153 13-180 201-363 (442)
159 PRK15494 era GTPase Era; Provi 99.9 2.3E-21 5E-26 153.6 16.5 157 12-178 49-217 (339)
160 PRK00454 engB GTP-binding prot 99.9 5.3E-21 1.1E-25 141.1 17.0 160 11-177 20-194 (196)
161 TIGR01393 lepA GTP-binding pro 99.9 7.7E-21 1.7E-25 160.1 18.9 156 15-176 3-179 (595)
162 PRK15467 ethanolamine utilizat 99.9 5.8E-21 1.2E-25 136.0 15.2 141 17-179 3-149 (158)
163 PRK05291 trmE tRNA modificatio 99.9 3.8E-21 8.3E-26 157.6 16.1 149 14-178 214-371 (449)
164 cd01894 EngA1 EngA1 subfamily. 99.9 6.1E-21 1.3E-25 135.6 14.9 145 19-175 1-156 (157)
165 TIGR03598 GTPase_YsxC ribosome 99.9 7.8E-21 1.7E-25 138.3 15.4 153 7-166 10-179 (179)
166 PRK11058 GTPase HflX; Provisio 99.9 9.8E-21 2.1E-25 153.6 17.2 158 16-179 198-364 (426)
167 PRK12297 obgE GTPase CgtA; Rev 99.9 2.9E-20 6.3E-25 150.0 19.8 159 16-179 159-329 (424)
168 TIGR00487 IF-2 translation ini 99.9 1.8E-20 3.9E-25 157.2 18.3 155 12-174 84-247 (587)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 2.4E-20 5.2E-25 152.4 18.4 164 14-180 158-343 (500)
170 PRK03003 GTP-binding protein D 99.9 1.3E-20 2.8E-25 155.9 16.7 155 14-178 37-200 (472)
171 cd01888 eIF2_gamma eIF2-gamma 99.9 2.5E-20 5.5E-25 138.1 15.3 158 16-176 1-198 (203)
172 TIGR03594 GTPase_EngA ribosome 99.9 7E-20 1.5E-24 150.5 19.4 159 13-178 170-345 (429)
173 CHL00189 infB translation init 99.9 4E-20 8.7E-25 157.4 17.9 158 12-176 241-409 (742)
174 cd04163 Era Era subfamily. Er 99.9 6.2E-20 1.3E-24 131.4 16.4 156 15-175 3-167 (168)
175 PRK00089 era GTPase Era; Revie 99.9 6.8E-20 1.5E-24 143.2 17.7 159 14-177 4-171 (292)
176 cd01895 EngA2 EngA2 subfamily. 99.9 1.5E-19 3.2E-24 130.5 18.2 155 15-175 2-173 (174)
177 PRK12298 obgE GTPase CgtA; Rev 99.8 1.3E-19 2.9E-24 145.5 18.4 162 15-178 159-334 (390)
178 KOG4423|consensus 99.8 3.5E-23 7.6E-28 144.2 -2.1 168 12-179 22-196 (229)
179 cd04105 SR_beta Signal recogni 99.8 1.1E-19 2.4E-24 134.5 16.4 118 17-135 2-124 (203)
180 TIGR00475 selB selenocysteine- 99.8 8.4E-20 1.8E-24 153.7 17.5 157 16-178 1-167 (581)
181 KOG0096|consensus 99.8 6.7E-21 1.5E-25 133.3 8.9 162 13-177 8-169 (216)
182 PRK05433 GTP-binding protein L 99.8 1.5E-19 3.3E-24 152.4 18.3 159 13-177 5-184 (600)
183 PRK05306 infB translation init 99.8 1.1E-19 2.3E-24 156.0 17.6 155 12-175 287-450 (787)
184 PF00009 GTP_EFTU: Elongation 99.8 4E-20 8.7E-25 135.5 11.4 159 14-176 2-186 (188)
185 TIGR00437 feoB ferrous iron tr 99.8 1.1E-19 2.4E-24 153.1 15.5 146 22-176 1-154 (591)
186 COG1159 Era GTPase [General fu 99.8 3.6E-19 7.7E-24 134.1 15.8 160 13-178 4-173 (298)
187 cd00880 Era_like Era (E. coli 99.8 1.6E-19 3.4E-24 128.2 13.4 151 20-175 1-162 (163)
188 COG2229 Predicted GTPase [Gene 99.8 9.3E-19 2E-23 122.5 16.7 156 12-175 7-176 (187)
189 PRK00093 GTP-binding protein D 99.8 4.4E-19 9.6E-24 145.9 17.7 146 16-174 2-159 (435)
190 KOG0076|consensus 99.8 6E-20 1.3E-24 126.8 10.0 162 12-179 14-189 (197)
191 PRK09518 bifunctional cytidyla 99.8 5E-19 1.1E-23 152.8 17.4 172 14-193 449-640 (712)
192 TIGR03594 GTPase_EngA ribosome 99.8 8.9E-19 1.9E-23 144.0 15.9 149 17-176 1-159 (429)
193 PRK00093 GTP-binding protein D 99.8 3.5E-18 7.6E-23 140.6 19.3 159 13-178 171-345 (435)
194 PRK09554 feoB ferrous iron tra 99.8 2E-18 4.4E-23 148.9 17.3 153 15-176 3-167 (772)
195 TIGR00491 aIF-2 translation in 99.8 2E-18 4.3E-23 144.8 16.7 157 15-178 4-217 (590)
196 PRK09518 bifunctional cytidyla 99.8 3.3E-18 7.2E-23 147.7 17.6 156 12-178 272-437 (712)
197 KOG0074|consensus 99.8 6E-19 1.3E-23 117.8 10.0 158 12-174 14-176 (185)
198 cd01876 YihA_EngB The YihA (En 99.8 3.9E-18 8.5E-23 122.3 15.2 150 17-175 1-169 (170)
199 TIGR01394 TypA_BipA GTP-bindin 99.8 3.4E-18 7.4E-23 143.9 16.3 156 17-176 3-190 (594)
200 TIGR00483 EF-1_alpha translati 99.8 2.7E-18 5.9E-23 140.6 15.1 154 12-169 4-199 (426)
201 cd01896 DRG The developmentall 99.8 1.6E-17 3.4E-22 125.4 17.9 151 17-176 2-225 (233)
202 PRK10218 GTP-binding protein; 99.8 1.1E-17 2.4E-22 140.8 18.7 159 14-176 4-194 (607)
203 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.3E-18 9.3E-23 126.6 12.9 146 17-167 1-184 (208)
204 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.8E-17 8.2E-22 119.9 17.2 148 15-166 2-172 (195)
205 PF10662 PduV-EutP: Ethanolami 99.8 1.2E-17 2.6E-22 114.5 13.5 135 17-173 3-142 (143)
206 PRK12317 elongation factor 1-a 99.8 4.9E-18 1.1E-22 139.1 13.8 153 12-169 3-197 (425)
207 KOG0072|consensus 99.8 8E-19 1.7E-23 117.5 7.2 162 12-178 15-180 (182)
208 TIGR03680 eif2g_arch translati 99.8 9.9E-18 2.1E-22 136.2 15.0 161 13-176 2-195 (406)
209 COG0218 Predicted GTPase [Gene 99.8 3.2E-17 6.9E-22 117.3 15.5 168 4-178 13-198 (200)
210 PRK04000 translation initiatio 99.8 1.9E-17 4.2E-22 134.5 15.8 163 11-176 5-200 (411)
211 PRK04004 translation initiatio 99.8 5E-17 1.1E-21 136.8 18.7 156 14-176 5-217 (586)
212 PRK10512 selenocysteinyl-tRNA- 99.8 8E-17 1.7E-21 136.3 18.7 155 17-176 2-165 (614)
213 cd04168 TetM_like Tet(M)-like 99.8 4.4E-17 9.5E-22 123.1 14.5 113 17-133 1-129 (237)
214 KOG1423|consensus 99.7 7.4E-17 1.6E-21 121.5 14.5 163 10-176 67-270 (379)
215 cd04167 Snu114p Snu114p subfam 99.7 4.6E-17 1E-21 121.6 13.5 113 17-133 2-136 (213)
216 COG0486 ThdF Predicted GTPase 99.7 6.6E-17 1.4E-21 128.7 14.5 156 12-179 214-378 (454)
217 COG1160 Predicted GTPases [Gen 99.7 6.3E-17 1.4E-21 128.5 13.9 177 14-196 177-373 (444)
218 PRK12736 elongation factor Tu; 99.7 2E-16 4.3E-21 128.2 16.7 147 12-162 9-178 (394)
219 COG1160 Predicted GTPases [Gen 99.7 1.7E-16 3.8E-21 126.0 15.6 148 16-176 4-164 (444)
220 cd01883 EF1_alpha Eukaryotic e 99.7 5.8E-17 1.3E-21 121.5 11.6 145 17-166 1-194 (219)
221 PRK12735 elongation factor Tu; 99.7 3.7E-16 8E-21 126.7 17.0 148 12-163 9-179 (396)
222 COG2262 HflX GTPases [General 99.7 5.4E-16 1.2E-20 121.5 17.1 164 13-183 190-362 (411)
223 TIGR00485 EF-Tu translation el 99.7 3.7E-16 8.1E-21 126.7 16.7 146 12-163 9-179 (394)
224 cd04165 GTPBP1_like GTPBP1-lik 99.7 4.4E-16 9.5E-21 116.7 15.8 153 17-173 1-219 (224)
225 KOG1707|consensus 99.7 3.5E-17 7.6E-22 132.5 10.3 166 12-179 6-177 (625)
226 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.5E-16 3.3E-21 118.6 12.5 164 17-183 1-182 (232)
227 CHL00071 tufA elongation facto 99.7 7E-16 1.5E-20 125.6 17.4 150 10-165 7-181 (409)
228 KOG1489|consensus 99.7 5.6E-16 1.2E-20 117.3 14.1 156 15-174 196-364 (366)
229 cd04104 p47_IIGP_like p47 (47- 99.7 1.1E-15 2.4E-20 112.7 15.1 158 15-179 1-186 (197)
230 COG0370 FeoB Fe2+ transport sy 99.7 6.9E-16 1.5E-20 127.9 15.4 155 15-178 3-165 (653)
231 cd01850 CDC_Septin CDC/Septin. 99.7 1.6E-15 3.4E-20 117.1 15.9 142 14-160 3-185 (276)
232 cd04169 RF3 RF3 subfamily. Pe 99.7 2.1E-15 4.5E-20 115.9 16.5 116 16-135 3-138 (267)
233 cd01885 EF2 EF2 (for archaea a 99.7 9.2E-16 2E-20 114.5 13.1 113 17-133 2-138 (222)
234 TIGR02034 CysN sulfate adenyly 99.7 1.2E-15 2.7E-20 123.9 14.9 147 16-167 1-187 (406)
235 PLN03126 Elongation factor Tu; 99.7 2.2E-15 4.8E-20 124.0 16.5 147 12-164 78-249 (478)
236 COG0532 InfB Translation initi 99.7 2.4E-15 5.2E-20 121.5 16.2 156 14-176 4-169 (509)
237 KOG0462|consensus 99.7 9.8E-16 2.1E-20 123.4 13.6 162 11-176 56-234 (650)
238 PRK05124 cysN sulfate adenylyl 99.7 1.3E-15 2.9E-20 125.6 14.3 152 12-168 24-216 (474)
239 cd01886 EF-G Elongation factor 99.7 2.3E-15 5E-20 115.8 13.7 138 17-160 1-158 (270)
240 PRK00741 prfC peptide chain re 99.7 5.2E-15 1.1E-19 123.3 16.7 117 13-133 8-144 (526)
241 cd04170 EF-G_bact Elongation f 99.7 1.2E-15 2.6E-20 117.9 11.8 113 17-135 1-131 (268)
242 PRK00049 elongation factor Tu; 99.7 1.4E-14 3E-19 117.5 17.6 146 12-163 9-179 (396)
243 PLN00043 elongation factor 1-a 99.6 1.1E-14 2.3E-19 119.4 16.5 149 13-167 5-203 (447)
244 PRK13351 elongation factor G; 99.6 6.5E-15 1.4E-19 127.3 15.8 120 11-134 4-139 (687)
245 COG1084 Predicted GTPase [Gene 99.6 2.4E-14 5.1E-19 109.3 16.1 161 13-179 166-338 (346)
246 PTZ00141 elongation factor 1- 99.6 1.3E-14 2.7E-19 119.1 15.2 149 13-167 5-203 (446)
247 TIGR00503 prfC peptide chain r 99.6 3.1E-14 6.7E-19 118.7 17.5 118 12-133 8-145 (527)
248 PF09439 SRPRB: Signal recogni 99.6 1.2E-15 2.7E-20 109.2 7.8 117 16-136 4-128 (181)
249 COG0536 Obg Predicted GTPase [ 99.6 1.3E-14 2.8E-19 111.3 13.6 164 16-180 160-336 (369)
250 PF01926 MMR_HSR1: 50S ribosom 99.6 2E-14 4.4E-19 97.1 13.3 106 17-129 1-116 (116)
251 PRK05506 bifunctional sulfate 99.6 1.8E-14 3.8E-19 123.5 15.9 152 11-167 20-211 (632)
252 PLN03127 Elongation factor Tu; 99.6 2.3E-14 4.9E-19 117.5 15.6 143 12-160 58-225 (447)
253 cd01899 Ygr210 Ygr210 subfamil 99.6 2.6E-14 5.7E-19 112.0 15.1 82 18-99 1-111 (318)
254 COG0481 LepA Membrane GTPase L 99.6 1.9E-14 4E-19 114.5 14.1 160 10-176 4-185 (603)
255 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 5.7E-14 1.2E-18 103.6 15.1 159 16-178 1-185 (196)
256 PTZ00327 eukaryotic translatio 99.6 2.6E-14 5.6E-19 117.0 14.1 163 11-176 30-232 (460)
257 KOG1145|consensus 99.6 7.1E-14 1.5E-18 112.9 15.9 156 13-176 151-315 (683)
258 PRK12739 elongation factor G; 99.6 1.6E-13 3.5E-18 118.5 17.3 118 11-134 4-139 (691)
259 COG4917 EutP Ethanolamine util 99.6 3.1E-14 6.7E-19 93.5 9.7 136 17-174 3-143 (148)
260 KOG0077|consensus 99.6 1.8E-14 3.8E-19 99.2 8.8 155 13-174 18-190 (193)
261 TIGR00484 EF-G translation elo 99.6 9.1E-14 2E-18 120.1 14.6 119 11-135 6-142 (689)
262 PRK09602 translation-associate 99.5 6.7E-13 1.5E-17 107.1 16.4 83 16-98 2-113 (396)
263 COG1163 DRG Predicted GTPase [ 99.5 6.5E-13 1.4E-17 101.3 14.9 156 12-176 60-288 (365)
264 PRK09866 hypothetical protein; 99.5 1.5E-12 3.3E-17 108.3 17.6 109 64-174 230-350 (741)
265 COG3596 Predicted GTPase [Gene 99.5 2E-13 4.2E-18 102.1 11.0 161 12-177 36-222 (296)
266 KOG3905|consensus 99.5 1.2E-12 2.6E-17 99.8 15.3 162 14-178 51-291 (473)
267 COG5256 TEF1 Translation elong 99.5 3E-13 6.5E-18 106.3 12.3 155 12-168 4-202 (428)
268 KOG1191|consensus 99.5 1.4E-13 3.1E-18 110.0 10.5 165 12-179 265-452 (531)
269 KOG1707|consensus 99.5 5.1E-13 1.1E-17 108.7 13.4 171 3-178 413-584 (625)
270 KOG0090|consensus 99.5 5.9E-13 1.3E-17 95.7 12.2 115 16-135 39-160 (238)
271 PRK00007 elongation factor G; 99.5 1.2E-12 2.7E-17 113.1 15.5 119 11-135 6-142 (693)
272 PF04548 AIG1: AIG1 family; I 99.5 1.2E-12 2.7E-17 97.5 12.1 161 16-180 1-189 (212)
273 TIGR00490 aEF-2 translation el 99.5 4.5E-13 9.8E-18 116.1 11.2 119 12-134 16-152 (720)
274 KOG1490|consensus 99.5 6.3E-13 1.4E-17 106.5 10.8 167 13-183 166-347 (620)
275 PRK12740 elongation factor G; 99.5 2E-12 4.3E-17 111.8 14.8 107 21-133 1-125 (668)
276 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.7E-12 8.1E-17 98.3 13.7 125 9-135 32-168 (313)
277 cd01853 Toc34_like Toc34-like 99.4 2.5E-12 5.3E-17 97.7 12.2 123 9-134 25-163 (249)
278 PRK14845 translation initiatio 99.4 6E-12 1.3E-16 111.2 15.6 143 27-176 473-672 (1049)
279 TIGR00101 ureG urease accessor 99.4 5.6E-12 1.2E-16 92.8 12.7 102 64-176 92-195 (199)
280 PTZ00258 GTP-binding protein; 99.4 1.4E-11 3E-16 98.6 15.3 88 11-98 17-126 (390)
281 PF05783 DLIC: Dynein light in 99.4 1.7E-11 3.7E-16 100.4 15.4 163 14-179 24-266 (472)
282 cd00066 G-alpha G protein alph 99.4 4.1E-11 8.8E-16 94.5 16.5 118 62-179 159-313 (317)
283 KOG1532|consensus 99.4 1.5E-12 3.3E-17 97.1 7.7 169 11-179 15-266 (366)
284 TIGR00157 ribosome small subun 99.4 2.9E-12 6.4E-17 97.3 9.0 96 75-174 24-120 (245)
285 PRK13768 GTPase; Provisional 99.4 5.2E-12 1.1E-16 96.5 10.3 111 65-176 98-246 (253)
286 smart00010 small_GTPase Small 99.4 8.9E-12 1.9E-16 84.8 10.4 114 16-166 1-115 (124)
287 PLN00116 translation elongatio 99.4 6.6E-12 1.4E-16 110.5 11.6 118 12-133 16-163 (843)
288 smart00275 G_alpha G protein a 99.3 1.2E-10 2.6E-15 92.6 16.7 118 62-179 182-336 (342)
289 PTZ00416 elongation factor 2; 99.3 1.3E-11 2.8E-16 108.6 11.9 118 12-133 16-157 (836)
290 COG2895 CysN GTPases - Sulfate 99.3 3.9E-11 8.5E-16 92.6 12.9 151 12-167 3-193 (431)
291 TIGR00073 hypB hydrogenase acc 99.3 1.5E-11 3.3E-16 91.4 10.0 56 120-175 148-205 (207)
292 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.1E-10 2.4E-15 87.7 14.5 141 12-164 36-183 (225)
293 PRK09435 membrane ATPase/prote 99.3 3.9E-11 8.4E-16 94.4 12.1 110 63-183 148-266 (332)
294 KOG1144|consensus 99.3 1.3E-11 2.8E-16 103.1 9.6 164 14-181 474-691 (1064)
295 PRK09601 GTP-binding protein Y 99.3 2.7E-10 5.9E-15 90.3 16.3 83 16-98 3-107 (364)
296 COG1217 TypA Predicted membran 99.3 6.8E-11 1.5E-15 94.3 12.8 144 15-162 5-170 (603)
297 KOG0461|consensus 99.3 4.4E-10 9.5E-15 86.7 15.8 162 13-178 5-194 (522)
298 PRK07560 elongation factor EF- 99.3 9E-12 2E-16 108.4 7.5 118 12-133 17-152 (731)
299 KOG0458|consensus 99.2 7.3E-11 1.6E-15 96.4 10.7 157 10-168 172-373 (603)
300 PF03029 ATP_bind_1: Conserved 99.2 3.6E-11 7.8E-16 90.8 8.1 111 65-175 92-235 (238)
301 PF00735 Septin: Septin; Inte 99.2 5.9E-10 1.3E-14 86.2 14.3 138 14-156 3-180 (281)
302 COG0480 FusA Translation elong 99.2 2.3E-10 4.9E-15 97.8 12.7 117 12-133 7-141 (697)
303 COG0378 HypB Ni2+-binding GTPa 99.2 3.7E-10 8E-15 80.7 11.5 148 15-176 13-200 (202)
304 TIGR00993 3a0901s04IAP86 chlor 99.2 5.1E-10 1.1E-14 93.8 13.7 124 9-134 112-250 (763)
305 smart00053 DYNc Dynamin, GTPas 99.2 5.3E-10 1.2E-14 84.2 12.6 69 64-135 125-207 (240)
306 KOG3886|consensus 99.2 7.7E-11 1.7E-15 86.0 7.6 147 15-162 4-164 (295)
307 COG5257 GCD11 Translation init 99.2 1.3E-10 2.8E-15 88.8 9.2 163 13-177 8-202 (415)
308 PF00350 Dynamin_N: Dynamin fa 99.2 2E-10 4.3E-15 82.5 9.8 63 65-130 102-168 (168)
309 KOG0705|consensus 99.2 1.5E-10 3.2E-15 94.0 8.9 165 13-184 28-196 (749)
310 PF05049 IIGP: Interferon-indu 99.2 2.9E-10 6.3E-15 90.2 10.4 160 13-179 33-220 (376)
311 TIGR02836 spore_IV_A stage IV 99.1 2.8E-09 6.1E-14 84.9 15.0 144 13-161 15-219 (492)
312 KOG0082|consensus 99.1 3.2E-09 6.9E-14 83.3 15.1 118 62-179 193-346 (354)
313 TIGR00750 lao LAO/AO transport 99.1 7.4E-10 1.6E-14 86.9 11.7 104 63-177 126-238 (300)
314 COG1703 ArgK Putative periplas 99.1 1.3E-09 2.7E-14 82.9 10.4 160 13-183 49-260 (323)
315 KOG0410|consensus 99.1 4.7E-10 1E-14 85.9 7.8 154 14-179 177-343 (410)
316 COG4108 PrfC Peptide chain rel 99.1 2.3E-09 5.1E-14 85.1 11.9 129 16-150 13-161 (528)
317 COG3276 SelB Selenocysteine-sp 99.1 3.1E-09 6.8E-14 84.6 12.2 154 17-176 2-161 (447)
318 COG5019 CDC3 Septin family pro 99.1 1.3E-08 2.8E-13 79.5 15.3 139 13-156 21-200 (373)
319 KOG0468|consensus 99.1 1.7E-09 3.6E-14 89.8 10.4 117 12-132 125-261 (971)
320 PRK10463 hydrogenase nickel in 99.0 1.4E-09 3E-14 83.7 8.6 55 121-175 231-287 (290)
321 COG0050 TufB GTPases - transla 99.0 5.4E-09 1.2E-13 79.2 11.1 144 12-161 9-177 (394)
322 COG0012 Predicted GTPase, prob 99.0 2E-08 4.3E-13 78.9 14.6 85 15-99 2-109 (372)
323 cd01900 YchF YchF subfamily. 99.0 1.5E-09 3.2E-14 83.5 8.2 81 18-98 1-103 (274)
324 PF03308 ArgK: ArgK protein; 99.0 3.9E-10 8.4E-15 84.5 4.8 154 14-179 28-232 (266)
325 cd01855 YqeH YqeH. YqeH is an 99.0 9.5E-09 2.1E-13 75.4 10.2 94 76-176 23-124 (190)
326 KOG2655|consensus 98.9 4.6E-08 1E-12 76.9 14.2 158 14-179 20-216 (366)
327 KOG3887|consensus 98.9 6.4E-09 1.4E-13 76.7 8.5 164 15-183 27-208 (347)
328 cd01859 MJ1464 MJ1464. This f 98.9 9.1E-09 2E-13 73.0 8.8 95 77-177 2-96 (156)
329 KOG1486|consensus 98.9 2E-07 4.4E-12 69.3 14.0 89 13-103 60-155 (364)
330 KOG1547|consensus 98.8 1.4E-07 3.1E-12 69.6 12.6 157 12-173 43-239 (336)
331 PRK12289 GTPase RsgA; Reviewed 98.8 2.5E-08 5.4E-13 79.5 9.2 91 80-175 82-173 (352)
332 KOG0464|consensus 98.8 8.1E-09 1.8E-13 81.8 5.3 129 2-134 24-168 (753)
333 cd01854 YjeQ_engC YjeQ/EngC. 98.8 4.2E-08 9.2E-13 76.5 9.2 88 82-174 73-161 (287)
334 KOG2486|consensus 98.8 2.1E-08 4.6E-13 75.4 6.7 159 9-174 130-313 (320)
335 PRK12288 GTPase RsgA; Reviewed 98.8 9.8E-08 2.1E-12 76.1 10.4 88 85-175 118-206 (347)
336 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 2.5E-08 5.4E-13 69.6 6.1 54 17-74 85-138 (141)
337 PRK00098 GTPase RsgA; Reviewed 98.7 5.9E-08 1.3E-12 76.0 8.7 86 84-173 77-163 (298)
338 TIGR03597 GTPase_YqeH ribosome 98.7 1.5E-07 3.1E-12 75.8 10.0 95 74-175 50-151 (360)
339 KOG1954|consensus 98.7 1.9E-07 4.2E-12 73.0 10.2 127 8-137 51-228 (532)
340 KOG0467|consensus 98.6 1.7E-07 3.6E-12 79.3 8.9 119 9-131 3-135 (887)
341 TIGR00092 GTP-binding protein 98.6 1.9E-07 4.1E-12 74.4 8.3 84 16-99 3-109 (368)
342 cd01856 YlqF YlqF. Proteins o 98.6 1.2E-07 2.6E-12 68.4 6.6 58 13-74 113-170 (171)
343 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.7E-07 3.7E-12 66.5 6.9 56 14-73 101-156 (157)
344 cd04178 Nucleostemin_like Nucl 98.6 1.6E-07 3.4E-12 67.6 6.5 57 13-73 115-171 (172)
345 COG5258 GTPBP1 GTPase [General 98.6 1.4E-06 3.1E-11 68.7 11.6 155 10-168 112-330 (527)
346 KOG1491|consensus 98.5 3.7E-07 8.1E-12 70.7 7.8 87 13-99 18-126 (391)
347 cd01859 MJ1464 MJ1464. This f 98.5 2.8E-07 6.1E-12 65.3 6.8 56 14-73 100-155 (156)
348 TIGR03348 VI_IcmF type VI secr 98.5 8.8E-07 1.9E-11 81.2 11.4 114 17-135 113-258 (1169)
349 COG5192 BMS1 GTP-binding prote 98.5 2.9E-06 6.3E-11 70.1 12.8 141 9-162 63-211 (1077)
350 cd03112 CobW_like The function 98.5 7.3E-07 1.6E-11 63.4 8.5 64 63-132 86-158 (158)
351 KOG0463|consensus 98.5 3.5E-07 7.7E-12 71.8 7.1 157 14-176 132-356 (641)
352 cd01855 YqeH YqeH. YqeH is an 98.5 2.4E-07 5.1E-12 68.0 5.9 56 15-73 127-189 (190)
353 cd01858 NGP_1 NGP-1. Autoanti 98.5 7.2E-07 1.6E-11 63.3 8.1 89 83-176 4-94 (157)
354 KOG0448|consensus 98.5 5.6E-06 1.2E-10 69.7 14.1 145 12-160 106-309 (749)
355 cd01849 YlqF_related_GTPase Yl 98.5 8.8E-07 1.9E-11 62.8 8.0 85 89-177 1-85 (155)
356 COG1618 Predicted nucleotide k 98.5 2.9E-05 6.3E-10 54.2 14.8 147 13-176 3-175 (179)
357 TIGR03596 GTPase_YlqF ribosome 98.5 5.3E-07 1.1E-11 70.0 7.1 58 13-74 116-173 (276)
358 PRK09563 rbgA GTPase YlqF; Rev 98.5 8.1E-07 1.8E-11 69.4 7.8 59 13-75 119-177 (287)
359 PF03193 DUF258: Protein of un 98.4 4.2E-07 9.1E-12 64.1 5.3 60 16-78 36-101 (161)
360 cd01856 YlqF YlqF. Proteins o 98.4 1.9E-06 4.1E-11 62.1 8.8 98 71-176 2-100 (171)
361 COG1161 Predicted GTPases [Gen 98.4 6.2E-07 1.4E-11 71.0 6.2 58 14-75 131-188 (322)
362 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.5E-06 3.2E-11 60.6 7.3 78 81-164 5-84 (141)
363 KOG1143|consensus 98.4 1.4E-06 2.9E-11 68.5 7.3 150 14-167 166-378 (591)
364 KOG0460|consensus 98.4 4.3E-06 9.3E-11 65.0 9.8 144 13-160 52-218 (449)
365 KOG0447|consensus 98.4 3E-05 6.4E-10 64.1 15.0 135 12-149 305-508 (980)
366 cd01851 GBP Guanylate-binding 98.4 9.5E-06 2E-10 61.0 11.3 89 13-102 5-106 (224)
367 KOG0465|consensus 98.3 1.6E-06 3.4E-11 72.0 7.3 122 12-137 36-173 (721)
368 PRK12288 GTPase RsgA; Reviewed 98.3 1.1E-06 2.5E-11 70.0 6.1 58 18-78 208-271 (347)
369 PRK10416 signal recognition pa 98.3 6.5E-06 1.4E-10 65.0 10.2 95 62-169 195-302 (318)
370 cd01849 YlqF_related_GTPase Yl 98.3 1.8E-06 3.9E-11 61.2 6.2 56 13-73 98-154 (155)
371 TIGR03596 GTPase_YlqF ribosome 98.3 7.3E-06 1.6E-10 63.7 9.9 101 71-179 4-105 (276)
372 PF11111 CENP-M: Centromere pr 98.3 6.9E-05 1.5E-09 53.0 13.4 152 1-176 1-152 (176)
373 TIGR00064 ftsY signal recognit 98.3 1.9E-05 4.1E-10 61.1 11.7 94 63-169 154-260 (272)
374 COG0523 Putative GTPases (G3E 98.3 3E-05 6.6E-10 61.2 12.4 97 64-169 85-193 (323)
375 PRK14974 cell division protein 98.2 9E-06 1.9E-10 64.5 9.2 93 64-169 223-322 (336)
376 PRK13796 GTPase YqeH; Provisio 98.2 1.5E-05 3.3E-10 64.3 10.5 93 76-175 58-157 (365)
377 PF09547 Spore_IV_A: Stage IV 98.2 9.2E-05 2E-09 59.6 14.3 143 15-161 17-219 (492)
378 KOG0466|consensus 98.2 1.6E-06 3.5E-11 66.4 4.4 163 12-176 35-240 (466)
379 PRK01889 GTPase RsgA; Reviewed 98.2 1.1E-05 2.5E-10 64.8 9.4 84 85-173 110-193 (356)
380 TIGR00157 ribosome small subun 98.2 2.9E-06 6.2E-11 64.7 5.4 23 17-39 122-144 (245)
381 COG3523 IcmF Type VI protein s 98.2 9.3E-06 2E-10 73.3 9.2 116 18-135 128-271 (1188)
382 COG1162 Predicted GTPases [Gen 98.2 2.7E-06 5.9E-11 65.6 4.9 59 17-78 166-230 (301)
383 KOG4273|consensus 98.2 2.8E-05 6E-10 58.1 9.9 111 16-132 5-121 (418)
384 PRK09563 rbgA GTPase YlqF; Rev 98.2 1.6E-05 3.5E-10 62.1 9.1 101 71-179 7-108 (287)
385 COG1126 GlnQ ABC-type polar am 98.2 3.2E-06 6.9E-11 61.8 4.6 44 136-179 141-186 (240)
386 PRK12289 GTPase RsgA; Reviewed 98.2 4.1E-06 8.8E-11 67.0 5.6 22 18-39 175-196 (352)
387 PF03266 NTPase_1: NTPase; In 98.1 8.9E-06 1.9E-10 58.3 6.8 135 17-166 1-164 (168)
388 KOG0085|consensus 98.1 7E-06 1.5E-10 60.6 6.0 118 62-179 197-351 (359)
389 TIGR01425 SRP54_euk signal rec 98.1 6.3E-05 1.4E-09 61.5 11.5 22 15-36 100-121 (429)
390 KOG0099|consensus 98.1 1.8E-05 3.9E-10 59.5 7.6 118 62-179 200-371 (379)
391 TIGR03597 GTPase_YqeH ribosome 98.1 8.8E-06 1.9E-10 65.6 6.4 58 16-76 155-216 (360)
392 PF00503 G-alpha: G-protein al 98.1 2.2E-05 4.7E-10 64.1 8.8 114 62-175 234-388 (389)
393 PRK13796 GTPase YqeH; Provisio 98.1 5.9E-06 1.3E-10 66.7 5.4 57 16-75 161-221 (365)
394 PRK13695 putative NTPase; Prov 98.1 0.00013 2.9E-09 52.6 11.5 80 83-176 92-172 (174)
395 PRK11537 putative GTP-binding 98.0 0.00022 4.8E-09 56.4 13.3 95 64-169 91-196 (318)
396 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.6E-05 3.6E-10 62.0 5.9 60 16-78 162-227 (287)
397 PF02492 cobW: CobW/HypB/UreG, 98.0 3E-05 6.5E-10 56.2 6.8 79 64-149 85-169 (178)
398 PRK14722 flhF flagellar biosyn 98.0 0.00014 3E-09 58.6 11.0 142 15-160 137-317 (374)
399 cd03110 Fer4_NifH_child This p 98.0 0.00056 1.2E-08 49.5 13.3 85 62-155 91-175 (179)
400 cd03115 SRP The signal recogni 98.0 0.00012 2.5E-09 52.8 9.6 83 63-155 82-170 (173)
401 PRK00098 GTPase RsgA; Reviewed 98.0 1.7E-05 3.6E-10 62.3 5.5 23 17-39 166-188 (298)
402 PF00448 SRP54: SRP54-type pro 97.9 0.00026 5.6E-09 52.1 11.1 86 64-160 84-176 (196)
403 PRK12727 flagellar biosynthesi 97.9 0.00026 5.6E-09 59.2 11.9 137 14-160 349-520 (559)
404 cd03114 ArgK-like The function 97.9 0.00017 3.7E-09 50.6 9.0 58 63-131 91-148 (148)
405 KOG3859|consensus 97.8 0.0001 2.3E-09 56.0 7.8 62 12-73 39-104 (406)
406 COG1419 FlhF Flagellar GTP-bin 97.8 0.00086 1.9E-08 54.0 13.3 154 15-178 203-395 (407)
407 PRK14721 flhF flagellar biosyn 97.8 7.7E-05 1.7E-09 60.9 7.5 135 15-160 191-362 (420)
408 PRK11889 flhF flagellar biosyn 97.7 0.00039 8.5E-09 56.1 10.1 86 64-159 321-412 (436)
409 TIGR02475 CobW cobalamin biosy 97.7 0.00083 1.8E-08 53.8 12.0 98 64-170 93-223 (341)
410 PRK12726 flagellar biosynthesi 97.7 0.00033 7.1E-09 56.3 9.4 88 63-160 285-378 (407)
411 cd02042 ParA ParA and ParB of 97.7 0.0004 8.6E-09 45.5 8.4 82 18-111 2-84 (104)
412 cd00009 AAA The AAA+ (ATPases 97.7 0.00054 1.2E-08 47.3 9.4 24 16-39 20-43 (151)
413 KOG1424|consensus 97.7 6.1E-05 1.3E-09 61.7 4.6 59 12-75 311-370 (562)
414 PRK12724 flagellar biosynthesi 97.7 0.00028 6.1E-09 57.4 8.2 135 16-161 224-396 (432)
415 PRK10867 signal recognition pa 97.6 0.00046 9.9E-09 56.8 9.1 87 63-159 183-275 (433)
416 cd02038 FleN-like FleN is a me 97.6 0.00039 8.5E-09 48.2 7.6 106 19-132 4-109 (139)
417 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00031 6.8E-09 40.2 5.7 45 86-131 12-58 (58)
418 KOG1487|consensus 97.6 0.00085 1.9E-08 50.7 9.5 82 16-99 60-148 (358)
419 COG1162 Predicted GTPases [Gen 97.6 0.00082 1.8E-08 52.1 9.7 92 82-176 74-166 (301)
420 TIGR00959 ffh signal recogniti 97.6 0.00062 1.4E-08 56.0 9.5 87 63-159 182-274 (428)
421 KOG0469|consensus 97.6 0.00021 4.5E-09 58.7 6.5 117 12-132 16-162 (842)
422 PF00004 AAA: ATPase family as 97.6 0.00054 1.2E-08 46.7 7.8 21 18-38 1-21 (132)
423 PF13207 AAA_17: AAA domain; P 97.6 7.7E-05 1.7E-09 50.3 3.3 21 17-37 1-21 (121)
424 PRK05703 flhF flagellar biosyn 97.6 0.00085 1.8E-08 55.3 9.8 88 63-160 299-393 (424)
425 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00092 2E-08 42.8 8.3 70 18-101 2-72 (99)
426 COG4598 HisP ABC-type histidin 97.5 0.00075 1.6E-08 48.4 8.0 142 18-178 35-201 (256)
427 PRK08118 topology modulation p 97.5 8.6E-05 1.9E-09 53.2 3.3 22 17-38 3-24 (167)
428 COG0563 Adk Adenylate kinase a 97.5 8.3E-05 1.8E-09 53.8 3.2 23 16-38 1-23 (178)
429 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00056 1.2E-08 46.9 7.0 22 17-38 24-45 (133)
430 PRK00771 signal recognition pa 97.5 0.0032 6.9E-08 52.0 12.4 86 64-159 176-267 (437)
431 PRK06995 flhF flagellar biosyn 97.5 0.00075 1.6E-08 56.2 8.7 102 64-178 335-448 (484)
432 PRK14723 flhF flagellar biosyn 97.5 0.00094 2E-08 58.4 9.3 136 17-160 187-359 (767)
433 PRK07261 topology modulation p 97.5 0.00012 2.6E-09 52.7 3.3 22 16-37 1-22 (171)
434 KOG0780|consensus 97.5 0.00062 1.3E-08 54.2 7.4 26 11-36 97-122 (483)
435 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0038 8.3E-08 45.2 11.0 87 16-113 26-117 (177)
436 PF13671 AAA_33: AAA domain; P 97.4 0.00013 2.7E-09 50.7 3.0 20 18-37 2-21 (143)
437 KOG2485|consensus 97.4 0.00033 7.1E-09 54.2 5.1 61 13-74 141-206 (335)
438 PF13555 AAA_29: P-loop contai 97.4 0.00019 4.2E-09 42.0 3.1 21 17-37 25-45 (62)
439 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0066 1.4E-07 42.4 11.3 23 17-39 28-50 (144)
440 COG3640 CooC CO dehydrogenase 97.4 0.00084 1.8E-08 50.0 6.8 63 64-132 134-197 (255)
441 PRK10646 ADP-binding protein; 97.4 0.0019 4.1E-08 45.3 8.3 60 17-79 30-92 (153)
442 KOG2484|consensus 97.4 0.00019 4.1E-09 57.2 3.5 59 13-75 250-308 (435)
443 COG0194 Gmk Guanylate kinase [ 97.4 0.00011 2.3E-09 52.7 2.0 25 15-39 4-28 (191)
444 PF05729 NACHT: NACHT domain 97.3 0.0026 5.7E-08 45.0 9.1 21 18-38 3-23 (166)
445 PRK12723 flagellar biosynthesi 97.3 0.0037 8.1E-08 50.8 10.6 87 63-159 254-347 (388)
446 PF02367 UPF0079: Uncharacteri 97.3 0.00068 1.5E-08 45.8 5.1 75 17-94 17-94 (123)
447 PRK06731 flhF flagellar biosyn 97.3 0.0033 7.1E-08 48.6 9.5 133 16-159 76-246 (270)
448 cd02019 NK Nucleoside/nucleoti 97.3 0.0003 6.5E-09 42.5 3.1 21 18-38 2-22 (69)
449 PF13521 AAA_28: AAA domain; P 97.3 0.00017 3.6E-09 51.5 2.2 22 17-38 1-22 (163)
450 COG0802 Predicted ATPase or ki 97.3 0.0017 3.8E-08 45.0 7.0 78 16-94 26-104 (149)
451 COG1116 TauB ABC-type nitrate/ 97.2 0.00034 7.3E-09 52.6 3.6 22 18-39 32-53 (248)
452 cd03111 CpaE_like This protein 97.2 0.0034 7.3E-08 41.4 7.9 100 21-129 6-106 (106)
453 COG1136 SalX ABC-type antimicr 97.2 0.0003 6.4E-09 52.5 2.9 22 17-38 33-54 (226)
454 PF00005 ABC_tran: ABC transpo 97.2 0.00035 7.6E-09 48.2 3.1 23 17-39 13-35 (137)
455 PRK06217 hypothetical protein; 97.2 0.00036 7.9E-09 50.8 3.3 23 16-38 2-24 (183)
456 cd01131 PilT Pilus retraction 97.2 0.0027 5.8E-08 46.9 7.9 22 18-39 4-25 (198)
457 KOG0459|consensus 97.2 0.00058 1.3E-08 54.6 4.4 157 11-169 75-278 (501)
458 TIGR00235 udk uridine kinase. 97.2 0.00052 1.1E-08 51.0 4.0 27 12-38 3-29 (207)
459 PRK03839 putative kinase; Prov 97.2 0.00038 8.3E-09 50.5 3.2 22 17-38 2-23 (180)
460 PF05621 TniB: Bacterial TniB 97.2 0.0053 1.2E-07 47.8 9.5 105 12-130 58-190 (302)
461 PRK10078 ribose 1,5-bisphospho 97.2 0.00037 8E-09 50.9 3.0 22 17-38 4-25 (186)
462 PRK05416 glmZ(sRNA)-inactivati 97.1 0.011 2.4E-07 46.2 11.2 73 17-115 8-82 (288)
463 PRK14737 gmk guanylate kinase; 97.1 0.00041 8.8E-09 50.7 3.0 23 16-38 5-27 (186)
464 PRK04195 replication factor C 97.1 0.017 3.6E-07 48.7 12.9 24 15-38 39-62 (482)
465 PRK14738 gmk guanylate kinase; 97.1 0.00065 1.4E-08 50.5 4.0 27 12-38 10-36 (206)
466 PF04665 Pox_A32: Poxvirus A32 97.1 0.00045 9.7E-09 52.2 3.1 26 13-38 11-36 (241)
467 PF13238 AAA_18: AAA domain; P 97.1 0.00045 9.7E-09 46.9 2.9 21 18-38 1-21 (129)
468 TIGR02322 phosphon_PhnN phosph 97.1 0.00047 1E-08 49.9 3.1 22 17-38 3-24 (179)
469 cd00071 GMPK Guanosine monopho 97.1 0.0005 1.1E-08 47.6 3.1 21 18-38 2-22 (137)
470 COG3840 ThiQ ABC-type thiamine 97.1 0.00067 1.4E-08 48.7 3.7 25 16-40 26-50 (231)
471 cd03238 ABC_UvrA The excision 97.1 0.00053 1.2E-08 49.5 3.3 21 16-36 22-42 (176)
472 PRK14530 adenylate kinase; Pro 97.1 0.00052 1.1E-08 51.3 3.3 21 17-37 5-25 (215)
473 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00053 1.1E-08 45.1 2.8 20 17-36 17-36 (107)
474 COG1120 FepC ABC-type cobalami 97.1 0.00047 1E-08 52.5 3.0 20 18-37 31-50 (258)
475 smart00382 AAA ATPases associa 97.1 0.00061 1.3E-08 46.6 3.4 26 16-41 3-28 (148)
476 COG1117 PstB ABC-type phosphat 97.1 0.0013 2.7E-08 48.5 4.9 19 18-36 36-54 (253)
477 PRK13949 shikimate kinase; Pro 97.0 0.00068 1.5E-08 48.7 3.3 21 17-37 3-23 (169)
478 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00057 1.2E-08 51.9 3.0 21 17-37 32-52 (254)
479 PF03205 MobB: Molybdopterin g 97.0 0.00074 1.6E-08 46.9 3.3 22 17-38 2-23 (140)
480 PRK14532 adenylate kinase; Pro 97.0 0.00062 1.3E-08 49.7 3.0 22 16-37 1-22 (188)
481 PRK10751 molybdopterin-guanine 97.0 0.00088 1.9E-08 48.1 3.6 24 15-38 6-29 (173)
482 COG3839 MalK ABC-type sugar tr 97.0 0.00078 1.7E-08 53.4 3.7 22 18-39 32-53 (338)
483 KOG3347|consensus 97.0 0.00053 1.1E-08 47.4 2.3 25 13-37 5-29 (176)
484 TIGR03263 guanyl_kin guanylate 97.0 0.00068 1.5E-08 49.1 3.0 22 17-38 3-24 (180)
485 PRK00625 shikimate kinase; Pro 97.0 0.00074 1.6E-08 48.7 3.1 21 17-37 2-22 (173)
486 COG0541 Ffh Signal recognition 97.0 0.00072 1.6E-08 54.7 3.2 25 12-36 97-121 (451)
487 COG3638 ABC-type phosphate/pho 97.0 0.00071 1.5E-08 50.5 2.9 21 17-37 32-52 (258)
488 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00072 1.6E-08 49.2 3.0 22 16-37 4-25 (188)
489 PRK01889 GTPase RsgA; Reviewed 97.0 0.0015 3.3E-08 52.7 5.1 24 16-39 196-219 (356)
490 COG4152 ABC-type uncharacteriz 96.9 0.00034 7.3E-09 52.5 1.2 45 18-73 31-75 (300)
491 PTZ00088 adenylate kinase 1; P 96.9 0.00084 1.8E-08 50.6 3.3 22 16-37 7-28 (229)
492 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0076 1.6E-07 46.6 8.6 86 17-106 82-167 (264)
493 cd02023 UMPK Uridine monophosp 96.9 0.00081 1.8E-08 49.6 3.1 21 18-38 2-22 (198)
494 COG1936 Predicted nucleotide k 96.9 0.00081 1.8E-08 47.7 2.8 21 16-36 1-21 (180)
495 PRK02496 adk adenylate kinase; 96.9 0.001 2.2E-08 48.4 3.5 22 16-37 2-23 (184)
496 PF07728 AAA_5: AAA domain (dy 96.9 0.001 2.2E-08 46.1 3.3 21 17-37 1-21 (139)
497 cd01130 VirB11-like_ATPase Typ 96.9 0.00099 2.1E-08 48.7 3.3 25 15-39 25-49 (186)
498 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00094 2E-08 50.0 3.2 23 17-39 32-54 (218)
499 PRK14531 adenylate kinase; Pro 96.9 0.00095 2.1E-08 48.6 3.1 22 16-37 3-24 (183)
500 cd03225 ABC_cobalt_CbiO_domain 96.9 0.00089 1.9E-08 49.8 3.0 23 17-39 29-51 (211)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.1e-44 Score=253.91 Aligned_cols=180 Identities=46% Similarity=0.768 Sum_probs=171.6
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
+...+++.+||+|+|++|||||+|+.||.++.|.+.+..|+++++..+.+.+++..+.++||||+|+++|+.+...||++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCCCCCHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVE 166 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~ 166 (218)
++++|+|||+++.+||+.+..|+.++..+...++|.++|+||+|+.+.+.++.++++.|+..++++ ++|+||+++.|++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 999999999999999999999999999999899999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhhcCcccc
Q psy1169 167 QAFLETAKKIYQNIKDGKLNA 187 (218)
Q Consensus 167 ~~~~~i~~~~~~~~~~~~~~~ 187 (218)
++|..+...+.++........
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCC
Confidence 999999999988866554444
No 2
>KOG0092|consensus
Probab=100.00 E-value=9e-42 Score=238.39 Aligned_cols=170 Identities=41% Similarity=0.732 Sum_probs=161.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+|++++|..+||||||+.|+..+.|.+...+|++..+.+..+.++...+.|.||||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
+|||+++.+||..++.|++.+.....+++.+.+++||+||.+.|++..++++.++...++.++|+||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy1169 173 AKKIYQNIKD 182 (218)
Q Consensus 173 ~~~~~~~~~~ 182 (218)
.+.+......
T Consensus 163 a~~lp~~~~~ 172 (200)
T KOG0092|consen 163 AEKLPCSDPQ 172 (200)
T ss_pred HHhccCcccc
Confidence 9988665443
No 3
>KOG0078|consensus
Probab=100.00 E-value=7.5e-41 Score=237.98 Aligned_cols=175 Identities=45% Similarity=0.834 Sum_probs=168.5
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
..++++.+||+++|++|||||+++.+|..+.+...+..+.++++..+.+..++..+.+++|||+|+++|..+...|++++
T Consensus 6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 33889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
+++++|||+++..||+.+..|+..+..+....+|+++|+||+|+...|.++.+..++++.+++++++|+||++|.||+++
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q psy1169 169 FLETAKKIYQNIKDG 183 (218)
Q Consensus 169 ~~~i~~~~~~~~~~~ 183 (218)
|-.|.+.+++.....
T Consensus 166 F~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 166 FLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHhhcchh
Confidence 999999999865544
No 4
>KOG0094|consensus
Probab=100.00 E-value=1e-40 Score=233.20 Aligned_cols=166 Identities=38% Similarity=0.674 Sum_probs=158.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..+|++++|+.+|||||||.|+..+.|...|..|++.++....+.+.+..+.+++|||+|+++|+++.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCC-CCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNP-NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
|||+++..||+...+|++.+...++. ++.+++|+||.||.+.+++..++....++++++.|+++||+.|.|+.++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999999988876 48899999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHh
Q psy1169 173 AKKIYQN 179 (218)
Q Consensus 173 ~~~~~~~ 179 (218)
...+.+.
T Consensus 181 aa~l~~~ 187 (221)
T KOG0094|consen 181 AAALPGM 187 (221)
T ss_pred HHhccCc
Confidence 7777654
No 5
>KOG0098|consensus
Probab=100.00 E-value=2e-40 Score=230.00 Aligned_cols=181 Identities=62% Similarity=1.043 Sum_probs=171.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
.+.+.+|++++|+.|||||+|+.+|.+..|.+.+..|+++++..+.+.++++.+.++||||+|++.|.++...|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
+|+|||++.+++|..+..|+..+.++..++..+++++||+||...|.+..++.++|+.++++.+.++||+++.|++++|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcccccccc
Q psy1169 171 ETAKKIYQNIKDGKLNANMTE 191 (218)
Q Consensus 171 ~i~~~~~~~~~~~~~~~~~~~ 191 (218)
.+...++.....+.....+..
T Consensus 162 nta~~Iy~~~q~g~~~~~~~~ 182 (216)
T KOG0098|consen 162 NTAKEIYRKIQDGVFDDINES 182 (216)
T ss_pred HHHHHHHHHHHhccccccccc
Confidence 999999888776655544443
No 6
>KOG0097|consensus
Probab=100.00 E-value=3e-40 Score=219.51 Aligned_cols=211 Identities=80% Similarity=1.252 Sum_probs=200.0
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
.+..+.+.+|.+++|+.|+|||+|++.|...+|....+.++++++..+.+++.+..+.++|||++|+++|+...+.|+++
T Consensus 4 ~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred CccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+.+.++|||++.+.+++.+..|+........++..+++++||.|+...+.+.++++++|+.++++.++++|+++|.|+++
T Consensus 84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcccccccccccccccCC-CCCcCCCCCCCCCCCCCC
Q psy1169 168 AFLETAKKIYQNIKDGKLNANMTESGVQHKERG-GPASLGDSSSSDKPNCSC 218 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~ 218 (218)
.|-...+.+++.+.++.+..+.-++.+++++.- ...+....+++++.+|+|
T Consensus 164 afle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 164 AFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 999999999999999999999999999998773 345667788899999999
No 7
>KOG0087|consensus
Probab=100.00 E-value=1.6e-40 Score=235.26 Aligned_cols=183 Identities=48% Similarity=0.830 Sum_probs=175.6
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
....+++.+||+++|++|+|||-|+.||..++|..+..+|+++++.++.+.++++.+..+||||+|+++|+.+...|+++
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+.+.++|||++...+|+.+..|+.+++.+.+.++++++|+||+||.+.+.+..++++.++...++.++++||+++.|+++
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCccccccc
Q psy1169 168 AFLETAKKIYQNIKDGKLNANMT 190 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~~~~~~ 190 (218)
+|..++..|+...+...+.....
T Consensus 167 aF~~~l~~I~~~vs~k~~~~~~~ 189 (222)
T KOG0087|consen 167 AFERVLTEIYKIVSKKQLDENND 189 (222)
T ss_pred HHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999988877766655
No 8
>KOG0086|consensus
Probab=100.00 E-value=1.5e-40 Score=223.45 Aligned_cols=211 Identities=54% Similarity=0.948 Sum_probs=197.0
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
|.+.|++.+|++++|+.|.|||+|+++|...+|......++++++..+.+.+.++.+.++||||+|+++|++..+.|+++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+.+.++|||++++++|+.+.+|+..++....+++.+++++||.||...+++.+.++-.|+++..+.++++|+++|.|+++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcccccccccccccccC--CCCCcCCCCCCCCCCCCCC
Q psy1169 168 AFLETAKKIYQNIKDGKLNANMTESGVQHKER--GGPASLGDSSSSDKPNCSC 218 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~c~~ 218 (218)
.|-...+.|+..+..+.+......+.++...- ..+-.++..-.+.++-|.|
T Consensus 162 aFl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C 214 (214)
T KOG0086|consen 162 AFLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC 214 (214)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence 99999999999999999999999988887655 3344444456677888888
No 9
>KOG0080|consensus
Probab=100.00 E-value=8.4e-39 Score=216.58 Aligned_cols=170 Identities=45% Similarity=0.791 Sum_probs=161.7
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
..+...+||+++|.+|+|||||+-+|..+.|.+..+.++++++..+.+.+++..+.+.||||+|+++|+.+...|++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
++|+|||++.+++|..+..|++++..+.. +++..++|+||.|....|.++.++..+|+..+++.++|+||++..++...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999998874 57778999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1169 169 FLETAKKIYQN 179 (218)
Q Consensus 169 ~~~i~~~~~~~ 179 (218)
|+.++..|++.
T Consensus 166 FeelveKIi~t 176 (209)
T KOG0080|consen 166 FEELVEKIIET 176 (209)
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=8.5e-38 Score=230.36 Aligned_cols=184 Identities=37% Similarity=0.719 Sum_probs=164.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
++|+++|..|||||||+++|..+.|...+.++.+.++....+.+++..+.+.|||++|++.+..++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999999888899998888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
|++++++|+.+..|+..+......+.|+++|+||+|+...+++..+++.++++.. ++.|++|||++|.|++++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766668999999999999878888888888898874 788999999999999999999999
Q ss_pred HHHHhhhcCcccccccccccccccC
Q psy1169 175 KIYQNIKDGKLNANMTESGVQHKER 199 (218)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (218)
.+..........+...++.-..++-
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (202)
T cd04120 161 DILKKMPLDILRNELSNSILSLQPE 185 (202)
T ss_pred HHHHhCccccccccccchhhccCCC
Confidence 9988766666666666666555544
No 11
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2.8e-37 Score=230.86 Aligned_cols=208 Identities=43% Similarity=0.759 Sum_probs=171.7
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
..+++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++
T Consensus 7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~ 86 (216)
T PLN03110 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (216)
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence 34568899999999999999999999999988888889999988888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
++|+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 87 GALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166 (216)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766789999999999998877788788999998899999999999999999999
Q ss_pred HHHHHHHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169 170 LETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS 217 (218)
Q Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 217 (218)
+++++.+.+................+.+..++.....+..+.++.+||
T Consensus 167 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (216)
T PLN03110 167 QTILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTSGNNKRGCC 214 (216)
T ss_pred HHHHHHHHHHhhccccccccCcccccCcCcCCcccccCccCCCCCCCc
Confidence 999999988765544333221111122222222222334555666764
No 12
>KOG0091|consensus
Probab=100.00 E-value=2.7e-38 Score=214.73 Aligned_cols=207 Identities=43% Similarity=0.715 Sum_probs=183.2
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
-..+.++.+|+|++-+|||+|++.+..+.+.+-.+||.++++..+.++. ++..+.+++|||+|+++|+++...|++++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 3467899999999999999999999999999999999999999988777 678899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcC-C-CCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-P-NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
++++|||+++.+||+.+..|+.....+.. + .+...+|++|+||...|++..++++.++..+++.|+|+|+++|.|+++
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 99999999999999999999998877664 4 444778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169 168 AFLETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS 217 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 217 (218)
.|+.+.+.++..+..+.......=..++...+++......-..|.|.+||
T Consensus 164 AF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 164 AFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 99999999999999888777766666666555555555566666666554
No 13
>KOG0079|consensus
Probab=100.00 E-value=1e-38 Score=213.33 Aligned_cols=170 Identities=42% Similarity=0.728 Sum_probs=162.6
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
-.+.+.++.+|+|++|+|||+|+.+|..+.|+.+|..++++++..+.+.+++..+.+.|||++|++.|+.+...|++..+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
++++|||+++.+||.++..|++.+.... +.+|-++|+||.|.++.+.+..+++++|+...++.+||+|++++.|++.+|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 9999999999999999999999998876 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy1169 170 LETAKKIYQNI 180 (218)
Q Consensus 170 ~~i~~~~~~~~ 180 (218)
..|.+++++..
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 14
>KOG0095|consensus
Probab=100.00 E-value=6.7e-38 Score=209.91 Aligned_cols=208 Identities=38% Similarity=0.721 Sum_probs=177.4
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
.+|...+||+++|..|+|||+|+++|..+-|++....++++++-.+.+++++..+.++||||+|+++|+++...|++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
++|++||++...+|+.+.+|+..+..+....+.-++|+||.|+.+.++++....++|+....+.|+++||++..|++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169 170 LETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS 217 (218)
Q Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 217 (218)
..+.-++..........++-.....+.+..+++....+-.+-+.-.||
T Consensus 162 ~~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~aqt~~~~cc 209 (213)
T KOG0095|consen 162 LDLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYAQTQLLTCC 209 (213)
T ss_pred HHHHHHHHHHHHhccchhhccccCccccCCCCcccchhHHHHHHhccc
Confidence 998888777655444444433333333333443333333333333343
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-36 Score=222.00 Aligned_cols=168 Identities=33% Similarity=0.666 Sum_probs=154.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
+++.+||+|+|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 46789999999999999999999999888888878888888777788888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|+|||++++.+|+.+..|+..+.... ++.|++||+||.|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997655 68999999999999888888889999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy1169 172 TAKKIYQNI 180 (218)
Q Consensus 172 i~~~~~~~~ 180 (218)
+.+.+..+.
T Consensus 162 l~~~i~~~~ 170 (189)
T cd04121 162 LARIVLMRH 170 (189)
T ss_pred HHHHHHHhc
Confidence 999887643
No 16
>KOG0394|consensus
Probab=100.00 E-value=1.7e-37 Score=215.04 Aligned_cols=168 Identities=35% Similarity=0.681 Sum_probs=157.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
+...+||+++|++|+|||||++++....|...+..+++.++..+.+.+++..+.++||||+|+++|.++...+++++|..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCC----CCeEEEEeeCCCCCCC--ccccHHHHHHHHHh-CCCcEEEeccCCCCC
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGS--RDVRYDEAKKFAEE-NDLIFVEASAMTGEN 164 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~ 164 (218)
+++||+.++.+|+.+..|.+++.....+ ..|+||++||.|+... +.++...++.||.. .++||||+||++..|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 9999999999999999999998876653 5789999999999763 78898999999987 789999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1169 165 VEQAFLETAKKIYQN 179 (218)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (218)
+.++|..+.+.+++.
T Consensus 166 V~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 166 VDEAFEEIARRALAN 180 (210)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999885
No 17
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-36 Score=223.22 Aligned_cols=172 Identities=36% Similarity=0.623 Sum_probs=151.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888999988877777777 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhc----CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCCCCHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLT----NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQAF 169 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 169 (218)
||++++++|+.+..|+..+.... ...+|+++|+||.|+...+.+..+++.+++...+ ..++++||+++.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988776432 2578999999999997666777888999999888 689999999999999999
Q ss_pred HHHHHHHHHhhhcCcccc
Q psy1169 170 LETAKKIYQNIKDGKLNA 187 (218)
Q Consensus 170 ~~i~~~~~~~~~~~~~~~ 187 (218)
.++++.+.+.........
T Consensus 161 ~~l~~~l~~~~~~~~~~~ 178 (201)
T cd04107 161 RFLVKNILANDKNLQQAE 178 (201)
T ss_pred HHHHHHHHHhchhhHhhc
Confidence 999999987654443333
No 18
>KOG0093|consensus
Probab=100.00 E-value=2.4e-36 Score=201.72 Aligned_cols=176 Identities=34% Similarity=0.687 Sum_probs=165.0
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
..+..++-+|++|+|+..+|||||+.++++..|...+.++.++++..+.+....+.+.+++|||+|++.++.+...++++
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg 93 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG 93 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence 34456778899999999999999999999999999999999999999988777788999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
++++|+|||+++.+||..+..|...+..+.-.+.|+|+++||+|+...|.++.+..+.++++.+..|||+||+.+.|+++
T Consensus 94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 99999999999999999999999999988878999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy1169 168 AFLETAKKIYQNIKDG 183 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~~ 183 (218)
+|+.++..|-+...++
T Consensus 174 ~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 174 VFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999997765543
No 19
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.1e-35 Score=217.44 Aligned_cols=171 Identities=41% Similarity=0.708 Sum_probs=153.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 35689999999999999999999999998888888888888777777888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|+|||++++++|+.+..|+..+.... ...|+++|+||+|+...+.+..+++..++...+.+++++|++++.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999999876654 57899999999999877777778888888888899999999999999999999
Q ss_pred HHHHHHHhhhcC
Q psy1169 172 TAKKIYQNIKDG 183 (218)
Q Consensus 172 i~~~~~~~~~~~ 183 (218)
+.+.++......
T Consensus 162 l~~~~~~~~~~~ 173 (199)
T cd04110 162 ITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHhhhcc
Confidence 999998765544
No 20
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=7.3e-35 Score=217.00 Aligned_cols=180 Identities=61% Similarity=1.023 Sum_probs=159.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
+.+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999999988888888888888888888888889999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|+|||+++.++|+.+..|+..+........|+++++||.|+.+.+.+..++..+++...+++++++||+++.|++++|.+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998877665568999999999999887778888899999999999999999999999999999
Q ss_pred HHHHHHHhhhcCcccccccc
Q psy1169 172 TAKKIYQNIKDGKLNANMTE 191 (218)
Q Consensus 172 i~~~~~~~~~~~~~~~~~~~ 191 (218)
+++.+++...+.......++
T Consensus 163 l~~~~~~~~~~~~~~~~~~~ 182 (210)
T PLN03108 163 TAAKIYKKIQDGVFDVSNES 182 (210)
T ss_pred HHHHHHHHhhhccccccccc
Confidence 99999887655544333333
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-34 Score=217.43 Aligned_cols=168 Identities=23% Similarity=0.462 Sum_probs=149.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
..-..+||+++|+.|||||||+++|..+.|...+.++.+..+. ..+.+++..+.+.||||+|++.|..+...+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3356799999999999999999999999999999999887764 457788899999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCCC-cEEE
Q psy1169 91 ALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEENDL-IFVE 156 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 156 (218)
+|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||.|+.. .+.+..++++++++..++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999984 78999887655 5789999999999964 366888999999999998 5999
Q ss_pred eccCCCC-CHHHHHHHHHHHHHHhh
Q psy1169 157 ASAMTGE-NVEQAFLETAKKIYQNI 180 (218)
Q Consensus 157 ~S~~~~~-~i~~~~~~i~~~~~~~~ 180 (218)
|||++|. |++++|..++..+.+..
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhc
Confidence 9999997 89999999999887753
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4e-35 Score=211.04 Aligned_cols=164 Identities=88% Similarity=1.367 Sum_probs=151.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999888888888888777778888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
||++++++|+.+..|+..+.....++.|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|..+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766678999999999999888878888899999988999999999999999999999998
Q ss_pred HHHH
Q psy1169 175 KIYQ 178 (218)
Q Consensus 175 ~~~~ 178 (218)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8764
No 23
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-34 Score=215.74 Aligned_cols=188 Identities=46% Similarity=0.792 Sum_probs=161.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+.+||+|+|++|||||||+++|....+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3589999999999999999999999988888888888887777766 466789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
+|||++++++|+.+..|+..+..... ...|+++|+||.|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998876543 35788999999999877778888899999998899999999999999999999
Q ss_pred HHHHHHHhhhcCcccccccccccccccCCC
Q psy1169 172 TAKKIYQNIKDGKLNANMTESGVQHKERGG 201 (218)
Q Consensus 172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (218)
|.+.+.++...........-..++.....+
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (211)
T cd04111 161 LTQEIYERIKRGELCALDGWDGVKSGFPAG 190 (211)
T ss_pred HHHHHHHHhhcCCCCccccccccccCCCcc
Confidence 999999887766544444444444444433
No 24
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.6e-35 Score=218.72 Aligned_cols=187 Identities=30% Similarity=0.524 Sum_probs=151.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|.+|||||||+++|+.+.+.. +.++.+.++....+ ..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46666665543332 5678999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC-------------------CccccHHHHHHHHHhCC-----
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG-------------------SRDVRYDEAKKFAEEND----- 151 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 151 (218)
|++++++|+.+..|+..+......+.|+++|+||.|+.. .+.+..++++.++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988877765556799999999999975 57788899999998865
Q ss_pred ---------CcEEEeccCCCCCHHHHHHHHHHHHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169 152 ---------LIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS 217 (218)
Q Consensus 152 ---------~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 217 (218)
++|+|+||++|.|++++|..+++.+++.............-.+. ..+++.+|.+||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVN----------LPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc----------CCCcccCCCCCC
Confidence 67999999999999999999999998765544332222211222 234566788887
No 25
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-34 Score=212.27 Aligned_cols=167 Identities=42% Similarity=0.734 Sum_probs=151.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878888888887777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|++++++|..+..|+..+........|+++++||.|+.+.+.+..+++..++...+++++++||+++.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887765678999999999998777777788888888888899999999999999999999999
Q ss_pred HHHhhhc
Q psy1169 176 IYQNIKD 182 (218)
Q Consensus 176 ~~~~~~~ 182 (218)
+..+...
T Consensus 161 ~~~~~~~ 167 (188)
T cd04125 161 IIKRLEE 167 (188)
T ss_pred HHHHhhc
Confidence 9775443
No 26
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.8e-35 Score=214.99 Aligned_cols=166 Identities=32% Similarity=0.519 Sum_probs=145.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.|||++|++++..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888887777776554 3445577888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
+++.++|+.+..|+..+..... .+.|+++|+||+|+...+.+...++..++...+++++++||+++.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888766542 5789999999999987777777788888888889999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy1169 174 KKIYQNIKDG 183 (218)
Q Consensus 174 ~~~~~~~~~~ 183 (218)
+.+.++...+
T Consensus 160 ~~l~~~~~~~ 169 (190)
T cd04144 160 RALRQQRQGG 169 (190)
T ss_pred HHHHHhhccc
Confidence 9887665544
No 27
>KOG0088|consensus
Probab=100.00 E-value=3.3e-36 Score=203.59 Aligned_cols=180 Identities=32% Similarity=0.597 Sum_probs=166.7
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169 7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86 (218)
Q Consensus 7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (218)
.+...+...+|++++|..=+|||||+-|+..+.|......+....+..+.+.+++....+.||||+|+++|..+-+-|++
T Consensus 5 ~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYR 84 (218)
T KOG0088|consen 5 TNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYR 84 (218)
T ss_pred ccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEe
Confidence 34456688999999999999999999999999999988888888888888888889999999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
.++++|+|||++++.||+.+++|...+....+..+-++||+||+||.+.+.+..+++..++..-++.|+++||+++.|+.
T Consensus 85 gSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 85 GSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred CCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCccc
Q psy1169 167 QAFLETAKKIYQNIKDGKLN 186 (218)
Q Consensus 167 ~~~~~i~~~~~~~~~~~~~~ 186 (218)
++|..+....+++....+..
T Consensus 165 elFe~Lt~~MiE~~s~~qr~ 184 (218)
T KOG0088|consen 165 ELFESLTAKMIEHSSQRQRT 184 (218)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 99999999999986554433
No 28
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-34 Score=212.87 Aligned_cols=190 Identities=40% Similarity=0.726 Sum_probs=158.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
+||+|+|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988764 5667777777666777888899999999999999999889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
||+++.++|+.+..|+..+......+.|+++|+||.|+...+.+..+++..++...+.+|+++||+++.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999888776568999999999999776767777888888888899999999999999999999999
Q ss_pred HHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169 175 KIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS 217 (218)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 217 (218)
.+.+..... ........+...+..+++.+||
T Consensus 161 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQ------------PDEGKFKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhcccc------------CCCCcEEeccccCcccccCCCC
Confidence 987642111 1111112445556666777777
No 29
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.3e-34 Score=208.68 Aligned_cols=166 Identities=47% Similarity=0.848 Sum_probs=151.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999999888899888887777888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
+|||++++++|+.+..|+..+......+.|+++++||.|+.+.+.+..+++..++...+.+++++||+++.|++++|.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998887665689999999999998777777788888888888999999999999999999999
Q ss_pred HHHHHH
Q psy1169 173 AKKIYQ 178 (218)
Q Consensus 173 ~~~~~~ 178 (218)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998864
No 30
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.4e-35 Score=211.56 Aligned_cols=164 Identities=28% Similarity=0.519 Sum_probs=146.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
+...+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..+...+++.+|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 35678999999999999999999999999988888987666 45677888999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCCC-cEEEe
Q psy1169 92 LMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEENDL-IFVEA 157 (218)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (218)
|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||.|+.. .+.+..++++++++..++ +|+||
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 78999887765 5799999999999964 345888999999999995 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHHH
Q psy1169 158 SAMTGEN-VEQAFLETAKKIY 177 (218)
Q Consensus 158 S~~~~~~-i~~~~~~i~~~~~ 177 (218)
||+++.| ++++|..+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988654
No 31
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.9e-35 Score=209.97 Aligned_cols=160 Identities=29% Similarity=0.587 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||+.++..+.|..++.+|.+..+ ...+.+++..+.+.||||+|++++..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999988889987766 445667888999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCCc----------cccHHHHHHHHHhCCC-cEEEeccCCCC
Q psy1169 96 DITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSR----------DVRYDEAKKFAEENDL-IFVEASAMTGE 163 (218)
Q Consensus 96 d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 163 (218)
|+++++||+.+ ..|+..+.... .+.|+++|+||.|+.+.+ .+..+++.+++...+. .|+||||+++.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999887665 579999999999996543 4778899999999887 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy1169 164 NVEQAFLETAKKIY 177 (218)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (218)
|++++|..+++.++
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.3e-34 Score=207.27 Aligned_cols=164 Identities=29% Similarity=0.474 Sum_probs=147.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.|||++|.+.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888888877555 34466788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
||++++.+|+.+..|+..+.... ..++|+++|+||.|+.+.+.+..+++..+++..+++|+++||+++.|++++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999888776643 35799999999999987788888899999988899999999999999999999999
Q ss_pred HHHHHh
Q psy1169 174 KKIYQN 179 (218)
Q Consensus 174 ~~~~~~ 179 (218)
+.+.+.
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 988763
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.2e-34 Score=208.33 Aligned_cols=167 Identities=37% Similarity=0.716 Sum_probs=149.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC----------CeEEEEEEeeCcchhhhhhhhH
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------GEKIKLQIWDTAGQERFRAVTR 82 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~ 82 (218)
++.+||+++|++|||||||++++....+...+.++.+.++....+.+. +..+.+.|||++|++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999998888888888766665553 4568999999999999999999
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT 161 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (218)
.+++++|++|+|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999998886643 35789999999999987777887889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy1169 162 GENVEQAFLETAKKIYQN 179 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (218)
+.|++++|+++++.++++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988764
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.9e-34 Score=212.64 Aligned_cols=164 Identities=30% Similarity=0.571 Sum_probs=148.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999889999999998888877754 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
||++++++|+.+..|+..+..... .+.|+++|+||.|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998876542 35789999999999877778888889999988999999999999999999999
Q ss_pred HHHHHHHh
Q psy1169 172 TAKKIYQN 179 (218)
Q Consensus 172 i~~~~~~~ 179 (218)
+.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988764
No 35
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=210.67 Aligned_cols=167 Identities=33% Similarity=0.545 Sum_probs=147.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.||||+|++++..++..+++.+|++|+|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 58999999999999999999999988888878776665 45666788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
||++++++|+.+..|+..+.... ..+.|+++++||.|+...+.+...++..++...+.+++++||+++.|++++|.+++
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998876653 35789999999999977776777778888888888999999999999999999999
Q ss_pred HHHHHhhhc
Q psy1169 174 KKIYQNIKD 182 (218)
Q Consensus 174 ~~~~~~~~~ 182 (218)
+.+....++
T Consensus 164 ~~l~~~~~~ 172 (189)
T PTZ00369 164 REIRKYLKE 172 (189)
T ss_pred HHHHHHhhc
Confidence 988765443
No 36
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=7.4e-34 Score=204.43 Aligned_cols=164 Identities=49% Similarity=0.867 Sum_probs=149.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999988888888888888778888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
||++++++|..+..|+..+......+.|+++++||.|+...+.+..+++..++...+++++++||+++.|++++|..+.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999887766567999999999999877777778899999999999999999999999999999998
Q ss_pred HHHH
Q psy1169 175 KIYQ 178 (218)
Q Consensus 175 ~~~~ 178 (218)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd01869 162 EIKK 165 (166)
T ss_pred HHHh
Confidence 7753
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=7.4e-34 Score=203.42 Aligned_cols=160 Identities=42% Similarity=0.783 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||+++++.+.+.+.+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888889888887778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|++++++|+.+..|+..+......+.|+++|+||.|+...+.+..+++..+++..+.+|+++||+++.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877665579999999999998888788889999999888999999999999999999999864
No 38
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1e-33 Score=204.12 Aligned_cols=167 Identities=65% Similarity=1.112 Sum_probs=152.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
+++.+||+|+|.+|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||++|++++..+...+++.+|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999999988888888888888778888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|+|||++++++++.+..|+..+.....++.|+++|+||.|+...+.+..++++.++...++.++++|++++.|++++|.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887766678999999999999877777778888898888999999999999999999999
Q ss_pred HHHHHHH
Q psy1169 172 TAKKIYQ 178 (218)
Q Consensus 172 i~~~~~~ 178 (218)
+.+.+++
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988765
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.2e-33 Score=203.20 Aligned_cols=162 Identities=38% Similarity=0.701 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777777778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|+++.++++.+..|+..+........|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999998877665678999999999998777777788888888888999999999999999999999887
Q ss_pred HH
Q psy1169 176 IY 177 (218)
Q Consensus 176 ~~ 177 (218)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 40
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.2e-34 Score=206.97 Aligned_cols=160 Identities=28% Similarity=0.528 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..+...+++.+|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6999999999999999999999999988888887766 456778889999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169 96 DITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEENDL-IFVEASAMT 161 (218)
Q Consensus 96 d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 161 (218)
|+++++||+.+ ..|+..+.... ++.|+++|+||.||.. .+.+..++++++++..++ +|+|+||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 78998887765 5799999999999954 245788999999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q psy1169 162 GEN-VEQAFLETAKKIY 177 (218)
Q Consensus 162 ~~~-i~~~~~~i~~~~~ 177 (218)
|.+ ++++|..+++.++
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998654
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=7.8e-34 Score=203.48 Aligned_cols=161 Identities=34% Similarity=0.692 Sum_probs=152.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
||+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.|||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998889888999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
+++++||+.+..|+..+........|+++++||.|+...+.+..++++.++..++.+|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988866799999999999988788998999999999999999999999999999999999987
Q ss_pred H
Q psy1169 177 Y 177 (218)
Q Consensus 177 ~ 177 (218)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 42
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.2e-33 Score=207.54 Aligned_cols=162 Identities=26% Similarity=0.519 Sum_probs=142.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+++|+.|||||||+.++..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999998888889876653 4456788899999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCC-CcEEEeccC
Q psy1169 95 YDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEEND-LIFVEASAM 160 (218)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~ 160 (218)
||++++.+|+.+. .|+..+.... .++|+++|+||.|+.+.+ .+..++++.++...+ ++|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 5877776544 579999999999996542 356678888998887 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~ 178 (218)
+|.|++++|.++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
No 43
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.6e-33 Score=208.88 Aligned_cols=164 Identities=24% Similarity=0.452 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999889999877664 56678889999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169 96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEASAMT 161 (218)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 161 (218)
|++++++|+.+. .|...+... .++.|+++|+||.|+... ..+..+++..+++..++ .|+|+||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999995 566555443 368999999999999642 13667889999999885 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHhhh
Q psy1169 162 GEN-VEQAFLETAKKIYQNIK 181 (218)
Q Consensus 162 ~~~-i~~~~~~i~~~~~~~~~ 181 (218)
+.+ ++++|..++..++...+
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 885 99999999998876544
No 44
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.6e-33 Score=202.77 Aligned_cols=162 Identities=33% Similarity=0.666 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999998888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcC-----CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTN-----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
|++++++++.+..|+..+..... .+.|+++|+||.|+...+....++.+.++...+++++++||+++.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998877653 4799999999999976666677888888888889999999999999999999
Q ss_pred HHHHHHH
Q psy1169 171 ETAKKIY 177 (218)
Q Consensus 171 ~i~~~~~ 177 (218)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.1e-33 Score=201.02 Aligned_cols=163 Identities=54% Similarity=0.915 Sum_probs=149.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
+.+||+|+|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
|||++++.+++.+..|+..+......+.|+++|+||.|+...+....++...++...+++++++||+++.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988777655799999999999987777777888888888889999999999999999999998
Q ss_pred HHH
Q psy1169 174 KKI 176 (218)
Q Consensus 174 ~~~ 176 (218)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.7e-33 Score=204.03 Aligned_cols=162 Identities=27% Similarity=0.504 Sum_probs=142.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|+.|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998887778888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC-----CccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG-----SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
|++++.+|+.+..|+..+........| ++|+||+|+.. .+....++.+++++..+++++++||+++.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776545567 67899999852 111223567788888889999999999999999999
Q ss_pred HHHHHHHH
Q psy1169 171 ETAKKIYQ 178 (218)
Q Consensus 171 ~i~~~~~~ 178 (218)
++.+.+++
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99998865
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.2e-33 Score=199.45 Aligned_cols=162 Identities=47% Similarity=0.865 Sum_probs=146.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
+.+||+|+|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999998888888888888777788888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 172 (218)
|||++++++|+.+..|+..+......+.|+++|+||+|+...+++..+++..++...+. .++++||++|.|++++|.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999988776667899999999999987777777888888888765 58999999999999999998
Q ss_pred HHH
Q psy1169 173 AKK 175 (218)
Q Consensus 173 ~~~ 175 (218)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 864
No 48
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.9e-33 Score=203.51 Aligned_cols=163 Identities=29% Similarity=0.524 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
+||+|+|++|+|||||+++|.++.+...+.++.+.++... +... +..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888877766443 4454 6788999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc----cccHHHHHHHHHhCCC-cEEEeccCCCCCHHHH
Q psy1169 95 YDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR----DVRYDEAKKFAEENDL-IFVEASAMTGENVEQA 168 (218)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 168 (218)
||+++.++|+.+. .|+..+.... ++.|+++|+||.|+.... .+..+++.+++...++ +++++||+++.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 4877665543 579999999999986532 4566788889988887 8999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy1169 169 FLETAKKIYQNI 180 (218)
Q Consensus 169 ~~~i~~~~~~~~ 180 (218)
|..+++.+....
T Consensus 159 f~~l~~~~~~~~ 170 (187)
T cd04132 159 FDTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHHhhh
Confidence 999999987643
No 49
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=6.5e-33 Score=198.53 Aligned_cols=160 Identities=63% Similarity=1.105 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888887788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|++++++++.+..|+..+.....++.|+++++||.|+...+.+..+++..++...++.++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877666789999999999998777777888899999988999999999999999999999865
No 50
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.3e-33 Score=202.53 Aligned_cols=160 Identities=26% Similarity=0.505 Sum_probs=139.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888888877664 3456788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEeccC
Q psy1169 95 YDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEASAM 160 (218)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~ 160 (218)
||++++++|+.+. .|+..+.... ++.|+++|+||.|+... +.+..+++++++...+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 5887776644 57999999999998643 4566778888888776 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAKKI 176 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (218)
+|.|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 51
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=8.1e-33 Score=207.03 Aligned_cols=168 Identities=33% Similarity=0.530 Sum_probs=147.5
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
.......+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+
T Consensus 7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 86 (219)
T PLN03071 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (219)
T ss_pred CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence 33447779999999999999999999999999888899998888777777777889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
|++|+|||++++.+|+.+..|+..+.... .+.|+++|+||.|+.. +.+..++. .++...++.|+++||+++.|++++
T Consensus 87 ~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHH
Confidence 99999999999999999999999887654 5799999999999953 33343444 677778899999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1169 169 FLETAKKIYQN 179 (218)
Q Consensus 169 ~~~i~~~~~~~ 179 (218)
|.+|++.+.+.
T Consensus 164 f~~l~~~~~~~ 174 (219)
T PLN03071 164 FLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHcC
Confidence 99999988764
No 52
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=2.8e-32 Score=200.92 Aligned_cols=164 Identities=34% Similarity=0.641 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
+||+|+|++|+|||||+++|..+.+.. .+.++.+..+....+.+++..+.+.+||++|.+++..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988874 5777888777777888888999999999999999998899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC----ccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS----RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
||+++..+|+.+..|+..+.... .+.|+++|+||.|+... +.+...++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887643 57999999999998532 34455667788888888999999999999999999
Q ss_pred HHHHHHHHhh
Q psy1169 171 ETAKKIYQNI 180 (218)
Q Consensus 171 ~i~~~~~~~~ 180 (218)
++.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999997654
No 53
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=8.1e-33 Score=198.34 Aligned_cols=160 Identities=34% Similarity=0.534 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.|||++|++++..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988877777765 333556677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
|+++..+|+.+..|+..+.... ..+.|+++++||+|+...+.+..++...++...+.+++++||+++.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887654 357999999999999776667767788888888889999999999999999999987
Q ss_pred HH
Q psy1169 175 KI 176 (218)
Q Consensus 175 ~~ 176 (218)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 54
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.2e-32 Score=196.17 Aligned_cols=163 Identities=57% Similarity=0.945 Sum_probs=149.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|+|||||++++.+..+.....++.+.++....+..++..+.+.+||++|++.+......+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|++++.+++.+..|+..+......+.|+++++||.|+...+.+..+.+.+++...+++++++|+.++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998877766789999999999997766777788888888889999999999999999999999988
Q ss_pred HHH
Q psy1169 176 IYQ 178 (218)
Q Consensus 176 ~~~ 178 (218)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 765
No 55
>KOG0081|consensus
Probab=100.00 E-value=4.6e-35 Score=198.18 Aligned_cols=174 Identities=37% Similarity=0.675 Sum_probs=159.0
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC---------CeEEEEEEeeCcchhhhhhh
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH---------GEKIKLQIWDTAGQERFRAV 80 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~ 80 (218)
-.|++.||.+.+|++|+|||||+.++.++.|......+.++++..+.+.++ +..+.+++|||+|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 467899999999999999999999999999999999999999988877653 34689999999999999999
Q ss_pred hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
...+++.+-+++++||+++..||-++.+|+.++..+.- .+..|++++||+||.+.+.+..+++.+++..+++||||+||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999887653 45669999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169 160 MTGENVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~~ 183 (218)
-++.|+++..+.+++.+++++..-
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998886543
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.3e-32 Score=196.45 Aligned_cols=162 Identities=36% Similarity=0.708 Sum_probs=143.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
||+++|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999988887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
++++++++.+..|+..+..... ...|+++|+||.|+...+. ...+++.+++...+.+++++||+++.|++++|..+.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999988765432 3578999999999965433 234567778888888999999999999999999999
Q ss_pred HHHHH
Q psy1169 174 KKIYQ 178 (218)
Q Consensus 174 ~~~~~ 178 (218)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88854
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.9e-32 Score=197.01 Aligned_cols=160 Identities=33% Similarity=0.602 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++.+..+...++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888888888877777777888899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|++++++++.+..|+..+..... +.|+++|+||.|+... ... .+..+++....++++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999887664 8999999999999733 333 34556777778899999999999999999999988
Q ss_pred HHH
Q psy1169 176 IYQ 178 (218)
Q Consensus 176 ~~~ 178 (218)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 865
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.2e-32 Score=195.93 Aligned_cols=159 Identities=33% Similarity=0.576 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC--CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
+||+++|++|+|||||++++..+.+...+.++.+.++....+.+. +..+.+.+||+||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888888888877777676 778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
|||++++++|+.+..|+..+.... .+.|+++|+||.|+...+.+..+++..++...+++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998876544 5799999999999987777777888889998999999999999999999999887
Q ss_pred HH
Q psy1169 174 KK 175 (218)
Q Consensus 174 ~~ 175 (218)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.5e-32 Score=196.13 Aligned_cols=160 Identities=33% Similarity=0.550 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|.+|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999999999998888777777776555 455667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
|+++.++|+.+..|+..+.... ..+.|+++++||.|+...+.+..++...+++..+++++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988876543 357999999999999877777777778888888899999999999999999999987
Q ss_pred HH
Q psy1169 175 KI 176 (218)
Q Consensus 175 ~~ 176 (218)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 60
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3.9e-32 Score=196.20 Aligned_cols=162 Identities=40% Similarity=0.741 Sum_probs=146.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-hhhHhhhccCCEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAAGALM 93 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 93 (218)
.+||+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999888888888888888888888889999999999999886 578889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC---CCCHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT---GENVEQAF 169 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~~ 169 (218)
|||++++++|+.+..|+..+.... ..++|+++|+||.|+...+.+..+++.+++...+++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887654 35799999999999988888887888899998899999999999 88999999
Q ss_pred HHHHHHH
Q psy1169 170 LETAKKI 176 (218)
Q Consensus 170 ~~i~~~~ 176 (218)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 61
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.7e-31 Score=199.22 Aligned_cols=171 Identities=47% Similarity=0.761 Sum_probs=146.6
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
...+....+||+|+|++|||||||+++|+...+. .+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 3445677899999999999999999999988764 566777777777777788888999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHH-HHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169 88 AAGALMVYDITRRSTYNHLSS-WLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV 165 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (218)
+|++|+|||++++++|+.+.. |...+.... ..+.|+++|+||.|+...+.+..++...++...+++|+++||+++.|+
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999976 555444332 246889999999999877777777888888888899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1169 166 EQAFLETAKKIYQN 179 (218)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (218)
+++|++|.+.+.+.
T Consensus 166 ~~l~~~l~~~~~~~ 179 (211)
T PLN03118 166 EQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999775
No 62
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=5.6e-32 Score=195.39 Aligned_cols=162 Identities=38% Similarity=0.663 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++|
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999999988888888888877777888889999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc----CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCCCCHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT----NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQ 167 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~ 167 (218)
+|||++++++++.+..|+..+.... ..+.|+++++||.|+. .+.+..+++++++...+ .+++++||+++.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 9999999999999999988776543 2468999999999986 55566788888988876 4799999999999999
Q ss_pred HHHHHHHH
Q psy1169 168 AFLETAKK 175 (218)
Q Consensus 168 ~~~~i~~~ 175 (218)
+|..+++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999865
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3e-32 Score=195.48 Aligned_cols=160 Identities=32% Similarity=0.524 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|.+|+|||||+++++.+.+...+.++.. +.....+.+++..+.+.|||++|.+.+..++..+++++|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999998887777664 444566777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
|++++++|+.+..|+..+.... ..+.|+++|+||.|+...+.+...+...++...+++++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999988877653 257999999999999776666666778888777889999999999999999999986
Q ss_pred HH
Q psy1169 175 KI 176 (218)
Q Consensus 175 ~~ 176 (218)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=4.6e-32 Score=194.91 Aligned_cols=159 Identities=28% Similarity=0.415 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||+++++++.+...+.++....+ ...+..+...+.+.+||++|++++..+...+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765444 444556778889999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
|+++.++|+.+..|+..+..... ++.|+++|+||.|+...+++...++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887766432 579999999999997767777778888888888899999999999999999998
Q ss_pred HHH
Q psy1169 173 AKK 175 (218)
Q Consensus 173 ~~~ 175 (218)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=8.8e-32 Score=192.68 Aligned_cols=160 Identities=34% Similarity=0.581 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|.+|||||||++++....+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877777777776667777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|++++.+++.+..|+..+.... ++.|+++++||.|+... . ..+...++...+++++++||+++.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998886543 57899999999998432 1 244556677778899999999999999999999998
Q ss_pred HHHh
Q psy1169 176 IYQN 179 (218)
Q Consensus 176 ~~~~ 179 (218)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.2e-31 Score=192.23 Aligned_cols=162 Identities=45% Similarity=0.803 Sum_probs=147.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|++|+|||||+++|++..+.....++.+..+....+.+++..+.+.+||++|++++...+..+++.+|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998887778888777778888888899999999999999998899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
+|++++++++.+..|+..+.......+|+++++||.|+...+....++...++...+++++++|++++.|++++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999888776678999999999999766667777888888888899999999999999999999988
Q ss_pred HH
Q psy1169 175 KI 176 (218)
Q Consensus 175 ~~ 176 (218)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 67
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.7e-32 Score=196.31 Aligned_cols=158 Identities=27% Similarity=0.555 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|||||||+.+++.+.+...+.++....+ ...+.+++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999888888876444 445567888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEeccCC
Q psy1169 96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEASAMT 161 (218)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~ 161 (218)
|++++++|+.+. .|+..+.... ++.|+++|+||.|+... +.+..+++.+++...+ ++++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999995 5887776544 57999999999999643 2467788899998877 4899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKK 175 (218)
Q Consensus 162 ~~~i~~~~~~i~~~ 175 (218)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999988763
No 68
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.3e-31 Score=191.73 Aligned_cols=160 Identities=36% Similarity=0.686 Sum_probs=145.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||++++++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|++++++|+.+..|+..+......+.|+++++||.|+...+....++...++...+++++++|++++.|++++|.++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876554579999999999997666677778888888888999999999999999999999764
No 69
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6e-32 Score=198.38 Aligned_cols=161 Identities=28% Similarity=0.477 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
.||+|+|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888776653 45556778899999999999999888999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCC-CcEEEeccCC
Q psy1169 96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEEND-LIFVEASAMT 161 (218)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~ 161 (218)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.+ .+..+++..++...+ ++|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5888777644 579999999999997554 244566777777765 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKIYQ 178 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (218)
+.|++++|.++++.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998864
No 70
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=9.8e-32 Score=192.95 Aligned_cols=161 Identities=37% Similarity=0.584 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|||||||+++|.+..+...+.++....+ .....+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888777777665433 455567778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
|++++++|+.+..|+..+.... ..+.|+++|+||.|+...+....+++..++...+.+++++||+++.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988776543 347899999999999877767777888888888899999999999999999999998
Q ss_pred HHH
Q psy1169 175 KIY 177 (218)
Q Consensus 175 ~~~ 177 (218)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.7e-31 Score=191.06 Aligned_cols=160 Identities=31% Similarity=0.548 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999988887777766554 45556778888899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
||+++..+|+.+..|+..+.... ..+.|+++|+||.|+.. +.....++.+++...+++++++||+++.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988877654 35789999999999965 44556777788888888999999999999999999998
Q ss_pred HHH
Q psy1169 174 KKI 176 (218)
Q Consensus 174 ~~~ 176 (218)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.9e-31 Score=191.43 Aligned_cols=161 Identities=34% Similarity=0.560 Sum_probs=140.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+++|++|+|||||++++++..+...+.++....+ .....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999888777777766444 44456788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
||+++.++|+.+..|+..+.... ..+.|+++++||+|+...+.+..++..+++...+.+++++||+++.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988877643 35789999999999987777777788888888888999999999999999999998
Q ss_pred HHH
Q psy1169 174 KKI 176 (218)
Q Consensus 174 ~~~ 176 (218)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 754
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.2e-31 Score=195.93 Aligned_cols=156 Identities=31% Similarity=0.577 Sum_probs=139.6
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh
Q psy1169 21 IGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 100 (218)
Q Consensus 21 ~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (218)
+|..|||||||+++++.+.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888889998888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 101 STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
.+|+.+..|+..+.... .++|+++|+||+|+.. +.+..+ ...++...++.|++|||+++.|++++|.++++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999888765 5799999999999854 334433 3467778889999999999999999999999998764
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4e-31 Score=189.81 Aligned_cols=160 Identities=28% Similarity=0.550 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+||+|+|++|||||||++++... .+...+.++.+.++....+.++ +..+.+.+||++|++.+..+...+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 6777888888888776666664 56789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
+|||++++++++.+..|+..+.... .+.|+++|+||.|+...+.+...+.+.+....+++++++||+++.|++++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998877654 579999999999997776677666777777778899999999999999999999
Q ss_pred HHHH
Q psy1169 173 AKKI 176 (218)
Q Consensus 173 ~~~~ 176 (218)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8765
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.3e-31 Score=196.13 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh--------hhhHhhhcc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTRSYYRG 87 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~ 87 (218)
+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.||||+|...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888887766666666778888999999999964321 123445789
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-hCCCcEEEeccCCCC
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-ENDLIFVEASAMTGE 163 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~ 163 (218)
+|++|+|||++++++|+.+..|++.+.... ..++|+++|+||+|+...+.+..++.+.++. ..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998877654 3679999999999997766666666766654 468999999999999
Q ss_pred CHHHHHHHHHHHHHHhhh
Q psy1169 164 NVEQAFLETAKKIYQNIK 181 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~ 181 (218)
|++++|+.+++.++.+.+
T Consensus 161 ~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 161 HILLLFKELLISATTRGR 178 (198)
T ss_pred CHHHHHHHHHHHhhccCC
Confidence 999999999998876533
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=4.9e-31 Score=188.70 Aligned_cols=161 Identities=37% Similarity=0.689 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||+++|....+...+.++.........+.+.+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777677766766677777778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|+++.++++.+..|+..+......+.|+++++||+|+...+.+..++..+++...+.+++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988887766689999999999998776677778888888889999999999999999999999876
Q ss_pred H
Q psy1169 176 I 176 (218)
Q Consensus 176 ~ 176 (218)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=9.4e-31 Score=189.21 Aligned_cols=164 Identities=39% Similarity=0.674 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888887788888877777788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCCCCHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~ 170 (218)
|++++++++.+..|...+..... .++|+++|+||.|+...+....++...++...+ .+++++|++++.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888876654432 379999999999997656566677778887776 7899999999999999999
Q ss_pred HHHHHHHHh
Q psy1169 171 ETAKKIYQN 179 (218)
Q Consensus 171 ~i~~~~~~~ 179 (218)
++.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999998875
No 78
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.7e-31 Score=194.39 Aligned_cols=158 Identities=21% Similarity=0.382 Sum_probs=129.3
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhC-----CCCCCCCCceee-eEEEEE--------EEECCeEEEEEEeeCcchhhhhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLH-QFTEQ-----KFMPDCPHTIGV-EFGTRI--------IEVHGEKIKLQIWDTAGQERFRA 79 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 79 (218)
.+||+++|+.|||||||+. ++.+. .+...+.+|.+. +..... ..+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 56543 344566777752 222221 24678899999999999875 3
Q ss_pred hhHhhhccCCEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCC-------------------Ccccc
Q psy1169 80 VTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG-------------------SRDVR 139 (218)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~-------------------~~~~~ 139 (218)
+...+++++|++|+|||++++.+|+.+. .|+..+.... ++.|+++|+||.|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566899999999999999999999997 5888876654 5789999999999964 36788
Q ss_pred HHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 140 YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
.++++++++..+++|+||||+++.|++++|..+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998864
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.3e-31 Score=191.06 Aligned_cols=163 Identities=18% Similarity=0.247 Sum_probs=140.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
++.+||+++|.+|||||||+++|+++.+. ..+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 67899999999999999999999999988 88888888887777777888888999999999999888889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQAFL 170 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 170 (218)
|+|||++++.+|+.+..|+..+.. ..+.|+++|+||.|+.+.+.....+..+++...++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 999999999999999888876532 23799999999999965554433455667777776 369999999999999999
Q ss_pred HHHHHHH
Q psy1169 171 ETAKKIY 177 (218)
Q Consensus 171 ~i~~~~~ 177 (218)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998775
No 80
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.4e-30 Score=186.63 Aligned_cols=165 Identities=44% Similarity=0.857 Sum_probs=146.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
+...++|+++|++|+|||||++++....+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++.+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998888777778888777777788888889999999999999998889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
++|||+++..+++.+..|+..+......++|+++++||.|+...+.+.......+......+++++|++++.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998887766668999999999999877777766677777777788999999999999999999
Q ss_pred HHHHH
Q psy1169 172 TAKKI 176 (218)
Q Consensus 172 i~~~~ 176 (218)
+.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98764
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=5.1e-31 Score=191.06 Aligned_cols=159 Identities=30% Similarity=0.597 Sum_probs=137.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEEC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI 97 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (218)
|+|+|++|+|||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999888777766554 34556788889999999999999998999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCCC-cEEEeccCCCC
Q psy1169 98 TRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEENDL-IFVEASAMTGE 163 (218)
Q Consensus 98 ~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 163 (218)
+++++|+.+. .|+..+.... ++.|+++|+||.|+.... .+..+++.+++...+. .++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5888776654 589999999999996532 2666778889988886 89999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1169 164 NVEQAFLETAKKIYQ 178 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~ 178 (218)
|++++|+.+++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988754
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=7.2e-31 Score=199.19 Aligned_cols=160 Identities=22% Similarity=0.411 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|+|||||+++|+.+.+...+.++.+ ++....+.+++..+.+.||||+|.+.+..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998887777765 455566778888899999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhh---------cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNL---------TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENV 165 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~---------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i 165 (218)
|+++.++|+.+..|+..+... ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998887653 224789999999999976667777778777754 4678999999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 166 EQAFLETAKKI 176 (218)
Q Consensus 166 ~~~~~~i~~~~ 176 (218)
+++|++|.+.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=6.7e-31 Score=187.25 Aligned_cols=153 Identities=21% Similarity=0.382 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|+.|+|||||+.+++.+.+...+.++ ...+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887765544 3334 45677888889999999999865 34678899999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCC--CCccccHHHHHHHHHhC-CCcEEEeccCCCCCHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLE--GSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|++++.+|+.+..|+..+..... .+.|+++|+||.|+. ..+++..++++++++.. ++.|++|||+++.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999998877653 578999999999985 35677778888898775 589999999999999999999
Q ss_pred HHHH
Q psy1169 172 TAKK 175 (218)
Q Consensus 172 i~~~ 175 (218)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=4.9e-31 Score=189.56 Aligned_cols=160 Identities=31% Similarity=0.512 Sum_probs=136.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhhhhHhhhccCCEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 95 (218)
||+|+|++|+|||||+++++...+...+.++....+ ...+.+++..+.+.+||++|++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998888777767654444 45556788889999999999885 3445677899999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC-CCHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG-ENVEQAFLET 172 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~~i~~~~~~i 172 (218)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..+++.+++...+.+|+++|++++ .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988877654 357999999999999777777778888899888899999999999 5999999999
Q ss_pred HHHHH
Q psy1169 173 AKKIY 177 (218)
Q Consensus 173 ~~~~~ 177 (218)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 85
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=2.6e-30 Score=185.03 Aligned_cols=159 Identities=50% Similarity=0.898 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|+|||||+++|....+.....++.+.++....+.+++..+.+.+||++|++.+......+++.+|++|+||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788888877777777788899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
|++++.+|+.+..|+..+.... ..+.|+++++||+|+. .+....++...++...+++++++|+++|.|++++++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999998887664 4589999999999996 3345567788888888999999999999999999999886
Q ss_pred H
Q psy1169 175 K 175 (218)
Q Consensus 175 ~ 175 (218)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=2.6e-30 Score=193.78 Aligned_cols=162 Identities=28% Similarity=0.361 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc-cCCEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR-GAAGALM 93 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 93 (218)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|.+. .....++. .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 56666665566677777888889999999999883 23455666 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998877654 2579999999999998777777777888888888899999999999999999999
Q ss_pred HHHHHHh
Q psy1169 173 AKKIYQN 179 (218)
Q Consensus 173 ~~~~~~~ 179 (218)
++.+...
T Consensus 159 ~~~~~~~ 165 (221)
T cd04148 159 VRQIRLR 165 (221)
T ss_pred HHHHHhh
Confidence 9988644
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=2.8e-30 Score=186.17 Aligned_cols=161 Identities=31% Similarity=0.558 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999999999999988777777776544 556667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCCCCHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
|++++++++.+..|...+.... ..+.|+++++||.|+...+....++..+++..++ ++++++||+++.|++++|.+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988776543 3579999999999998777777777888888877 7899999999999999999998
Q ss_pred HHHH
Q psy1169 174 KKIY 177 (218)
Q Consensus 174 ~~~~ 177 (218)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7664
No 88
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=4.2e-30 Score=182.95 Aligned_cols=158 Identities=54% Similarity=0.924 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
|++++++++.+..|+..+......+.|+++++||+|+........++..+++...+.+++++|++++.|++++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999988877656799999999999975666677888889988899999999999999999999886
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=1.7e-30 Score=188.13 Aligned_cols=156 Identities=26% Similarity=0.495 Sum_probs=134.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 6899999999999999999999888888877753 444456677888899999999999999998899999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169 96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEENDL-IFVEASAMT 161 (218)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 161 (218)
|++++++|+.+. .|+..+.... ++.|+++++||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 6887776533 5699999999999863 356677789999998887 899999999
Q ss_pred CCCHHHHHHHHH
Q psy1169 162 GENVEQAFLETA 173 (218)
Q Consensus 162 ~~~i~~~~~~i~ 173 (218)
+.|++++|+.++
T Consensus 159 ~~~v~~lf~~~~ 170 (173)
T cd04130 159 QKNLKEVFDTAI 170 (173)
T ss_pred CCCHHHHHHHHH
Confidence 999999998876
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=7.1e-30 Score=185.05 Aligned_cols=159 Identities=26% Similarity=0.518 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988877777665443 445667888889999999999999888899999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169 96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEASAMT 161 (218)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 161 (218)
|+.++.+|+.+. .|+..+... .++.|+++++||.|+.+. +.+..+++..++...+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 577766654 478999999999998543 24566778888888775 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKI 176 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (218)
+.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.3e-29 Score=180.48 Aligned_cols=162 Identities=35% Similarity=0.576 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||+++++...+...+.++....+ ......++..+.+.+||++|+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888877777765544 445567888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
|++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.....+..++...++++++++|++++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888777643 57999999999999765556667777888888899999999999999999999998
Q ss_pred HHHH
Q psy1169 175 KIYQ 178 (218)
Q Consensus 175 ~~~~ 178 (218)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=2.8e-29 Score=179.27 Aligned_cols=158 Identities=34% Similarity=0.544 Sum_probs=139.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
||+|+|++|+|||||+++++...+...+.++.. +.....+..++..+.+.+||++|+..+......+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777766 4445566677778899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
+++.++++.+..|+..+..... ...|+++++||+|+...+....+++..++...+.+++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877654 589999999999998767777788888888888999999999999999999999875
No 93
>KOG0083|consensus
Probab=99.97 E-value=8.7e-32 Score=177.27 Aligned_cols=161 Identities=40% Similarity=0.779 Sum_probs=150.5
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEEC
Q psy1169 19 IIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI 97 (218)
Q Consensus 19 ~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (218)
+++|++++|||+|+-|+.++.|-. ...++.++++..+.+..++..+.+++|||+|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999999998887764 5678899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 98 TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
.+..||++...|+.++..+.+..+.+++++||+|+.+.+.+..++.+.++..+++|+.++||++|-|++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999988888999999999999998999999999999999999999999999999999999998886
Q ss_pred Hh
Q psy1169 178 QN 179 (218)
Q Consensus 178 ~~ 179 (218)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 64
No 94
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=5e-29 Score=184.18 Aligned_cols=161 Identities=26% Similarity=0.403 Sum_probs=134.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
||+++|++|+|||||+++|+...+...+.++.. +.....+.+.+..+.+.|||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988777666654 3445566677778899999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCC-CccccHHHHHHHHH-hCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEG-SRDVRYDEAKKFAE-ENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
++++.+++.+..|+..+..... .+.|+++|+||.|+.. .+.+..++..+... ..+.+++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999887776554 4799999999999865 34444444444443 4567899999999999999999999
Q ss_pred HHHHH
Q psy1169 174 KKIYQ 178 (218)
Q Consensus 174 ~~~~~ 178 (218)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 87753
No 95
>KOG0395|consensus
Probab=99.97 E-value=2.7e-29 Score=183.50 Aligned_cols=164 Identities=36% Similarity=0.520 Sum_probs=151.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..+||+++|.+|+|||+|..+++...|...+.++++ +.+.+.+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999988 5557777889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
||++++..||+.+..++..+..... ..+|+++|+||+|+.+.+.+..+++.+++..++++|+|+||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999998844333 468999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1169 173 AKKIYQ 178 (218)
Q Consensus 173 ~~~~~~ 178 (218)
++.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998866
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=3.3e-28 Score=177.24 Aligned_cols=163 Identities=34% Similarity=0.506 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
.||+|+|++|+|||||+++|....+...+.++....+ ...+...+..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888776666655444 445566777888999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
|+++.++++.+..|+..+.... ..+.|+++++||+|+...+.+..++...++...+.+++++|++++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999888776643 357899999999999766666666777778888889999999999999999999998
Q ss_pred HHHHh
Q psy1169 175 KIYQN 179 (218)
Q Consensus 175 ~~~~~ 179 (218)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 88653
No 97
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.4e-29 Score=181.75 Aligned_cols=153 Identities=20% Similarity=0.321 Sum_probs=125.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
+|+++|++|||||||+++|.+..+...+.++.+... ..++...+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999998888777777776543 2344567889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH----HHHHHHHHhCCCcEEEeccCC------CCCHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY----DEAKKFAEENDLIFVEASAMT------GENVE 166 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~i~ 166 (218)
+++..++..+..|+..+.... +++|+++|+||.|+...+.+.. ..+..++...++.++++||++ +.|+.
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999988888776443 6899999999999976654321 123455566678899999888 89999
Q ss_pred HHHHHHHH
Q psy1169 167 QAFLETAK 174 (218)
Q Consensus 167 ~~~~~i~~ 174 (218)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99988874
No 98
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.5e-28 Score=177.09 Aligned_cols=159 Identities=31% Similarity=0.534 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
.||+|+|++|||||||+++|....+...+.++....+. ..+.+++..+.+.+|||+|++.+..+...++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999988877777765553 45567888899999999999998888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169 96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEASAMT 161 (218)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 161 (218)
|+++.++|+.+. .|+..+.... .+.|+++++||.|+... ..+...+.++++...+. .++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 4777666543 57999999999998543 22344667777777654 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKI 176 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (218)
+.|++++|.++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1e-28 Score=177.90 Aligned_cols=155 Identities=19% Similarity=0.349 Sum_probs=122.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|++|+|||||+++|....+. .+.++.+.++. .+. ...+.+.+||++|++.+..++..+++.+|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999877664 34566665543 222 24578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----NDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~ 166 (218)
+|||+++..++..+..|+..+.... ..+.|+++|+||+|+.+. +..+++..++.. ..+.++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 9999999999999888877665432 246899999999998543 344566565432 23468999999999999
Q ss_pred HHHHHHHH
Q psy1169 167 QAFLETAK 174 (218)
Q Consensus 167 ~~~~~i~~ 174 (218)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 100
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=2.7e-28 Score=178.70 Aligned_cols=162 Identities=28% Similarity=0.491 Sum_probs=134.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
.||+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+||++|++.+......++..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888776666655444 345566778889999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCC----------CccccHHHHHHHHHhCCC-cEEEeccCCCC
Q psy1169 96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG----------SRDVRYDEAKKFAEENDL-IFVEASAMTGE 163 (218)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 163 (218)
|+++.++|+.+. .|+..+.... +..|+++|+||.|+.. .+.+..+++..++...+. .|+++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999996 5888777654 4699999999999854 234555778888888775 79999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy1169 164 NVEQAFLETAKKIYQN 179 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (218)
|++++|+++.+.+.-.
T Consensus 160 ~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 160 GVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999877553
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.6e-28 Score=177.73 Aligned_cols=159 Identities=19% Similarity=0.313 Sum_probs=123.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|.+|||||||++++..+.+. .+.++.+.++. .+ +...+.+.+||++|++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999877765 45667665543 22 234578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-----CCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-----DLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~ 166 (218)
+|||+++.++++.+..++..+... ...+.|++|++||.|+.... ..++........ .+.++++||++|.|++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999999888777665432 22478999999999986543 334433333222 2246689999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 167 QAFLETAKKIYQ 178 (218)
Q Consensus 167 ~~~~~i~~~~~~ 178 (218)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887754
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2e-28 Score=176.64 Aligned_cols=156 Identities=20% Similarity=0.392 Sum_probs=125.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
||+++|.+|||||||+++|.+..+.. +.+|.+.++. .+.+ ..+.+.+||++|+..+...+..+++.+|+++||+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886653 5666665553 2222 45789999999999998899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC------CcEEEeccCCCCCHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND------LIFVEASAMTGENVEQAF 169 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~ 169 (218)
+++++++..+..|+..+.... ..+.|+++++||.|+.+. +..+++.+++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999888776532 245899999999999533 45566666654322 357899999999999999
Q ss_pred HHHHHHHHHh
Q psy1169 170 LETAKKIYQN 179 (218)
Q Consensus 170 ~~i~~~~~~~ 179 (218)
++|.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998877653
No 103
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=2.7e-28 Score=178.10 Aligned_cols=164 Identities=21% Similarity=0.352 Sum_probs=129.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
.+||+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998877644 566565554544443 3467899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh------CCCcEEEeccCCCCCHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------NDLIFVEASAMTGENVE 166 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~i~ 166 (218)
|+|+++..+++.+..|+..+.... ..+.|+++++||+|+... ...++...+... ...+++++||+++.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999998888887665432 347999999999998543 333444444321 13468899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy1169 167 QAFLETAKKIYQNIK 181 (218)
Q Consensus 167 ~~~~~i~~~~~~~~~ 181 (218)
++|++|.+.+.+..+
T Consensus 160 ~l~~~l~~~l~~~~~ 174 (183)
T cd04152 160 EGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876544
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=6.4e-29 Score=177.45 Aligned_cols=152 Identities=20% Similarity=0.377 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|.+|||||||++++..+.+. .+.++.+.+.. .+.. ..+.+.+||++|++++..++..+++++|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 45666665542 2222 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHH-HHHHHH----hCCCcEEEeccCCCCCHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDE-AKKFAE----ENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~----~~~~~~~~~S~~~~~~i~~~~ 169 (218)
|+++..+++.+..|+..+... .....|+++++||.|+.+.. ...+ ...+.. ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999998877766432 22468999999999995432 2222 222221 224457899999999999999
Q ss_pred HHHHH
Q psy1169 170 LETAK 174 (218)
Q Consensus 170 ~~i~~ 174 (218)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.1e-28 Score=178.92 Aligned_cols=157 Identities=20% Similarity=0.359 Sum_probs=122.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|++|+|||||++++..+.+. .+.++.+.++.. +.. ..+.+.+||++|++.+..++..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34699999999999999999999877664 455676665532 222 4578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 166 (218)
+|||++++.+++....|+..+.... ..+.|++||+||.|+.+.. ..++...... ...+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999988887765432 2468999999999996442 2233322221 123347789999999999
Q ss_pred HHHHHHHHHH
Q psy1169 167 QAFLETAKKI 176 (218)
Q Consensus 167 ~~~~~i~~~~ 176 (218)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999997764
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=5.3e-28 Score=174.62 Aligned_cols=157 Identities=30% Similarity=0.609 Sum_probs=130.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999988766666665444 444566788899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHhhhcCCCCeEEEEeeCCCCCCCcc-----------ccHHHHHHHHHhCCC-cEEEeccCCC
Q psy1169 96 DITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLEGSRD-----------VRYDEAKKFAEENDL-IFVEASAMTG 162 (218)
Q Consensus 96 d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~S~~~~ 162 (218)
|++++++|..... |+..+.... .+.|+++|+||+|+...+. +..+++..++...+. +++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999887654 666555544 4899999999999876542 345677778877777 8999999999
Q ss_pred CCHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAK 174 (218)
Q Consensus 163 ~~i~~~~~~i~~ 174 (218)
.|++++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999998875
No 107
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.6e-27 Score=178.30 Aligned_cols=167 Identities=30% Similarity=0.531 Sum_probs=144.3
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
+.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34456699999999999999999999988888888899988888777777888999999999999999888899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
++|+|||+++..+|..+..|+..+.... .+.|+++++||.|+... ... .....++...++.++++|++++.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVK-ARQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887654 57899999999998543 233 23345667778899999999999999999
Q ss_pred HHHHHHHHHh
Q psy1169 170 LETAKKIYQN 179 (218)
Q Consensus 170 ~~i~~~~~~~ 179 (218)
.+|.+.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999988764
No 108
>KOG4252|consensus
Probab=99.96 E-value=2.1e-30 Score=179.03 Aligned_cols=184 Identities=29% Similarity=0.486 Sum_probs=167.6
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
+.+++..||++|+|..++||||+|++++.+-|...+..+++.++..+.+.+.+..+.+.+||++|+++|+.+...|++++
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 44688999999999999999999999999999999999999999888888888888888999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
.+.++||+.+|..||+....|++.+.... ..+|.++|-||+|+.++..+...+++.++......++.+|+++..|+..+
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 99999999999999999999999988766 57999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcccccccccc
Q psy1169 169 FLETAKKIYQNIKDGKLNANMTESG 193 (218)
Q Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~ 193 (218)
|..|++.+.+..+++...+....++
T Consensus 173 F~YLaeK~~q~~kq~~~~~~~~q~s 197 (246)
T KOG4252|consen 173 FAYLAEKLTQQKKQSLNANERKQSS 197 (246)
T ss_pred HHHHHHHHHHHHHHHhhhchhhccc
Confidence 9999999999877654444443333
No 109
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=5.2e-28 Score=178.00 Aligned_cols=148 Identities=21% Similarity=0.432 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-----CeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-----GEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
+||+++|++|+|||||+++|..+.+...+.+|.+.++..+.+.++ +..+.+.|||++|++.+..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888898888777776663 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhc-------------------CCCCeEEEEeeCCCCCCCccccHH----HHHHHH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLT-------------------NPNTVIFLIGNKMDLEGSRDVRYD----EAKKFA 147 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~piivv~nK~Dl~~~~~~~~~----~~~~~~ 147 (218)
+|+|||++++.||+.+..|+..+.... ..++|+++|+||.|+.+.+.+... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999886531 247999999999999766544433 345567
Q ss_pred HhCCCcEEEeccCCCC
Q psy1169 148 EENDLIFVEASAMTGE 163 (218)
Q Consensus 148 ~~~~~~~~~~S~~~~~ 163 (218)
.+.+++.++.++.+..
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 7889998888888553
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.3e-27 Score=174.18 Aligned_cols=160 Identities=19% Similarity=0.322 Sum_probs=122.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..+||+++|++|||||||++++..+.+.. +.++.+.++. .+. ...+.+.+||++|++.+..++..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998777654 5566665543 222 24578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 166 (218)
+|+|+++.+++..+..++..+... .....|++|++||.|+.+.. ..+++..... ...+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999888777665432 12468999999999985432 2223222221 122356799999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
++|++|.+.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877653
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.4e-27 Score=171.71 Aligned_cols=160 Identities=30% Similarity=0.399 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+++|.+|||||||+++|..+.+...+..+ .... .....+.+..+.+.+||++|.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998887654433 2222 333445667789999999999887777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHHHHHHHHhC-C-CcEEEeccCCCCCHHHHHH
Q psy1169 96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDEAKKFAEEN-D-LIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~S~~~~~~i~~~~~ 170 (218)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+... .+....+.... + .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 5777666544 579999999999997654421 22233333332 2 3799999999999999999
Q ss_pred HHHHHHHH
Q psy1169 171 ETAKKIYQ 178 (218)
Q Consensus 171 ~i~~~~~~ 178 (218)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887754
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.1e-27 Score=173.51 Aligned_cols=155 Identities=23% Similarity=0.360 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|++|+|||||+++|.+..+ ..+.++.+.. ...+.++ .+.+.+||++|++.+..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4568999999999999999999987744 3445555533 3334443 478899999999998888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 166 (218)
+|+|+++..+++....|+..+... ...+.|+++|+||+|+.+.. ..+++..+.. ...++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999999888887766542 23579999999999996543 3345555543 245679999999999999
Q ss_pred HHHHHHHH
Q psy1169 167 QAFLETAK 174 (218)
Q Consensus 167 ~~~~~i~~ 174 (218)
++|+++++
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99998864
No 113
>KOG0393|consensus
Probab=99.96 E-value=9.3e-29 Score=176.98 Aligned_cols=165 Identities=28% Similarity=0.553 Sum_probs=146.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
...+|++|||+.++|||+|+..+..+.|+..+.||...++ ...+.+ ++..+.+.+|||+|+++|+.++...+..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3569999999999999999999999999999999988555 555668 49999999999999999999888899999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEe
Q psy1169 92 LMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEA 157 (218)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (218)
|+||++.++.||+++ .+|+.++..+. +++|+++||+|.||..+ ..+..++...++++.+ +.|+|+
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999986 55999888877 89999999999999743 3567788899999977 569999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHh
Q psy1169 158 SAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
||++..|+.++|+..+..++..
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcc
Confidence 9999999999999999988774
No 114
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=6.2e-27 Score=169.28 Aligned_cols=174 Identities=32% Similarity=0.541 Sum_probs=141.7
Q ss_pred CCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhc
Q psy1169 38 QKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT 117 (218)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (218)
+.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677888999999988888889999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcCcccccccccccccc
Q psy1169 118 NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHK 197 (218)
Q Consensus 118 ~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (218)
..++|+++|+||+|+...+.+..+++..++...+..++++||++|.|++++|++|++.+.+.... ..+....++
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~------~~~~~~~~~ 156 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS------NSNDANVVD 156 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc------CCCCCCccc
Confidence 56799999999999977667777888888888888999999999999999999999888653211 111111222
Q ss_pred cCCCCCcCCCCCCCCCCCCCC
Q psy1169 198 ERGGPASLGDSSSSDKPNCSC 218 (218)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~c~~ 218 (218)
++...++..+.+.--..|-|
T Consensus 157 -~~~~~~~~~~~~~~~~~~~~ 176 (176)
T PTZ00099 157 -IQLTNNSNANDKNMLSKCMC 176 (176)
T ss_pred -eeccccCCccchhhHhhhcC
Confidence 44455555666666666666
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.5e-27 Score=170.78 Aligned_cols=152 Identities=18% Similarity=0.305 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+|+++|++|||||||+++|.+..+ ...+.++.+.... .+ ....+.+.+||+||.+.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4455666654432 22 234678899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 167 (218)
|+++..++.....|+..+.... ..+.|+++|+||+|+..... .++...... ...+.++++||+++.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888877665432 25799999999999865322 222222221 1234589999999999999
Q ss_pred HHHHHHH
Q psy1169 168 AFLETAK 174 (218)
Q Consensus 168 ~~~~i~~ 174 (218)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1e-26 Score=168.43 Aligned_cols=154 Identities=25% Similarity=0.379 Sum_probs=119.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..+||+++|++|+|||||++++..+.+.. ..++.+.++. .+.+ ..+.+.+||++|.+.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999877664 4556555542 2223 35789999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHH-HHHH----HhCCCcEEEeccCCCCCHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEA-KKFA----EENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~S~~~~~~i~~ 167 (218)
|+|+++.+++.....++..+.... ..+.|+++++||+|+... ...++. ..+. ...+++++++||+++.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999999988877776664432 246899999999998653 222332 2222 23456789999999999999
Q ss_pred HHHHHHH
Q psy1169 168 AFLETAK 174 (218)
Q Consensus 168 ~~~~i~~ 174 (218)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=4.1e-27 Score=169.41 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=119.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
.|+++|++|||||||+++|.+. +...+.++.+... ..+.. ..+.+.+||++|+..+..++..+++.+|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999876 5566667766542 33333 45788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccH-HH---HHHHHHhC--CCcEEEeccCCC------C
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRY-DE---AKKFAEEN--DLIFVEASAMTG------E 163 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~-~~---~~~~~~~~--~~~~~~~S~~~~------~ 163 (218)
+++..+++.+..|+..+..... .+.|+++|+||.|+.+.+.... .+ ...++... .+.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999888765432 4789999999999976542211 11 12223222 345778999998 8
Q ss_pred CHHHHHHHHHH
Q psy1169 164 NVEQAFLETAK 174 (218)
Q Consensus 164 ~i~~~~~~i~~ 174 (218)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999974
No 118
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.8e-26 Score=177.75 Aligned_cols=143 Identities=26% Similarity=0.495 Sum_probs=123.2
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-------------eEEEEEEeeCcchhh
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-------------EKIKLQIWDTAGQER 76 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~ 76 (218)
.+....+||+|+|+.|||||||+++|..+.+...+.++++.++....+.+++ ..+.+.|||++|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 4566779999999999999999999999999888889999888777666642 468899999999999
Q ss_pred hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC------------CCCeEEEEeeCCCCCCCc---c---c
Q psy1169 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN------------PNTVIFLIGNKMDLEGSR---D---V 138 (218)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piivv~nK~Dl~~~~---~---~ 138 (218)
|..++..++++++++|+|||+++..+|+.+..|++.+..... .++|++||+||+||...+ . +
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999999999999886531 258999999999996543 2 2
Q ss_pred cHHHHHHHHHhCCC
Q psy1169 139 RYDEAKKFAEENDL 152 (218)
Q Consensus 139 ~~~~~~~~~~~~~~ 152 (218)
..+++++++...++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 56889999988764
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2e-26 Score=169.32 Aligned_cols=156 Identities=19% Similarity=0.296 Sum_probs=123.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|++|||||||++++.+..+. .+.++.+... ..+.++ .+.+.+||+||+..+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45789999999999999999999987764 4445544432 334444 367889999999988888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh----------------CCCcEE
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE----------------NDLIFV 155 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~ 155 (218)
+|+|+++.++++....|+..+.... ..+.|+++++||+|+.. .+..++.++++.. ..+.++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999999988888877766533 25699999999999854 3455666666543 224589
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q psy1169 156 EASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 156 ~~S~~~~~~i~~~~~~i~~~ 175 (218)
++||+++.|++++|++|.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999764
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=2e-26 Score=164.70 Aligned_cols=152 Identities=24% Similarity=0.429 Sum_probs=117.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
+|+++|++|+|||||+++|.+..+... .++.+... ..+.. ...+.+.+||++|++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999998877543 45555443 23333 245789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHH------HHhCCCcEEEeccCCCCCHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKF------AEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
+++..++..+..|+..+.... ..+.|+++|+||+|+.... ...++... ....+++++++||+++.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999988888877765432 2579999999999985432 22222222 12234568999999999999999
Q ss_pred HHHHH
Q psy1169 170 LETAK 174 (218)
Q Consensus 170 ~~i~~ 174 (218)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98864
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1.6e-26 Score=164.91 Aligned_cols=151 Identities=23% Similarity=0.358 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
||+++|++++|||||++++....+.. ..++.+.+.. .+. ...+.+.+||+||++.+..++..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776643 3455554432 222 245789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhh-hcCCCCeEEEEeeCCCCCCCccccHHHHH-HHHH----hCCCcEEEeccCCCCCHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDLEGSRDVRYDEAK-KFAE----ENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
++++.++.....++..+.. ....+.|+++++||+|+.+.. ...+.. .+.. ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9999888776666554432 222479999999999986433 112222 2211 1234699999999999999999
Q ss_pred HHHH
Q psy1169 171 ETAK 174 (218)
Q Consensus 171 ~i~~ 174 (218)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=5.5e-26 Score=163.50 Aligned_cols=152 Identities=25% Similarity=0.404 Sum_probs=116.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKF------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
+|+|+|++|+|||||+++|..... ...+.++.+.... .+.++ ...+.+||+||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999975322 2233444444432 33333 5788999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-------CCCcEEEeccCCC
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-------NDLIFVEASAMTG 162 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~ 162 (218)
+++|+|+++.+++.....|+..+.... ..+.|+++++||+|+... ....+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999999988888877665432 257999999999998653 333444444332 3457999999999
Q ss_pred CCHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAK 174 (218)
Q Consensus 163 ~~i~~~~~~i~~ 174 (218)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=4.2e-26 Score=162.70 Aligned_cols=151 Identities=22% Similarity=0.368 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
||+++|.+|+|||||++++.+... ....++.+.... .+.+ ..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 344455554432 2333 35789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
++++.++.....|+..+.... ..+.|+++++||+|+.... ..++...... ...++++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877665533 3579999999999986543 2233333322 2456799999999999999999
Q ss_pred HHHH
Q psy1169 171 ETAK 174 (218)
Q Consensus 171 ~i~~ 174 (218)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8874
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=5e-26 Score=164.77 Aligned_cols=158 Identities=27% Similarity=0.397 Sum_probs=123.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
++..+||+++|+.||||||+++++....... ..||.+.+. ..+.+ ..+.+.+||.+|+..++..|..|+..+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeee--CcEEEEEEeccccccccccceeecccccee
Confidence 3788999999999999999999998765432 444544443 33333 446789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh------CCCcEEEeccCCCCC
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------NDLIFVEASAMTGEN 164 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~ 164 (218)
|||+|.++.+.+.+....+..+... ...+.|++|++||.|+.+. ...+++...... ..+.++.+|+.+|.|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999999888887777666543 2257999999999998654 334555544432 344588999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKI 176 (218)
Q Consensus 165 i~~~~~~i~~~~ 176 (218)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 125
>KOG0073|consensus
Probab=99.94 E-value=2.8e-25 Score=151.47 Aligned_cols=163 Identities=20% Similarity=0.333 Sum_probs=130.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
.++.++|.++|..|+||||++++|++.. .....|+.+++..+.++ ..+++++||.+|+..+++.|.+|+..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4569999999999999999999998766 44556677766555444 678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCc---cccH-HHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSR---DVRY-DEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~---~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
|+|+|.+++..+++....+..+... .-.+.|+++++||.|+...- .+.. -....++....++++.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 9999999998888876665554432 22478999999999996321 1111 12344456678899999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
+.++|+.+.+.++
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.7e-25 Score=163.40 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=119.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..++|+++|.+|||||||++++.+..+.. +.++.+... ..+.+ ..+.+.+||++|+..+...+..++..+|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 556999999999999999999999876542 334443322 22233 3478899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh------------CCCcEEEecc
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------------NDLIFVEASA 159 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~S~ 159 (218)
+|+|++++.++.....++..+... ...+.|+++++||.|+... +..+++.+.... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999998888877765542 2257899999999998542 444555444321 2334899999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy1169 160 MTGENVEQAFLETAKK 175 (218)
Q Consensus 160 ~~~~~i~~~~~~i~~~ 175 (218)
+++.|+++++++|.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=8.7e-25 Score=155.51 Aligned_cols=152 Identities=24% Similarity=0.381 Sum_probs=119.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
.|+++|++|||||||+++|.+..+...+.++.+.+... +..+ .+.+.+||++|+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999998888888877766532 2232 3789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
+++..++.....|+..+.... ..+.|+++++||.|+...... .+..... ....++++++|++++.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999999888877776654322 247899999999998654322 2221111 12345789999999999999999
Q ss_pred HHHH
Q psy1169 171 ETAK 174 (218)
Q Consensus 171 ~i~~ 174 (218)
++.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9865
No 128
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=4.4e-24 Score=151.59 Aligned_cols=157 Identities=33% Similarity=0.500 Sum_probs=126.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+.+.++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999998887777777777777776677777668899999999999988888889999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 95 YDITRR-STYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 95 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
+|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||.++.|+++++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999887 6666655 56666655554488999999999996544 33333444444556679999999999999999876
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=2.1e-24 Score=157.00 Aligned_cols=154 Identities=22% Similarity=0.295 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------ceeeeEEEEEE--EE---CCeEEEEEEeeCcchhhhh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPH------TIGVEFGTRII--EV---HGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~G~~~~~ 78 (218)
+|+++|.+++|||||+++|+... +...+.+ +.+.+...... .+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 1111111 11222222222 22 5677889999999999999
Q ss_pred hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC---cEE
Q psy1169 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL---IFV 155 (218)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 155 (218)
..+..+++.+|++|+|+|+++..+++.+..|.... ..++|+++|+||+|+...+ ......++....++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999987777766664322 2468999999999985432 12223445555554 389
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q psy1169 156 EASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 156 ~~S~~~~~~i~~~~~~i~~~~ 176 (218)
++||++|.|++++|+++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998654
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1.9e-24 Score=160.51 Aligned_cols=156 Identities=22% Similarity=0.194 Sum_probs=113.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh---------hhhhhHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVTRS 83 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 83 (218)
+..++|+|+|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+|||||... +.... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 45689999999999999999999987654333233333333444444432 3788999999732 22222 2
Q ss_pred hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE 163 (218)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (218)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+....... ........+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 36789999999999999888887777776665554578999999999986543221 3444566789999999999
Q ss_pred CHHHHHHHHHHH
Q psy1169 164 NVEQAFLETAKK 175 (218)
Q Consensus 164 ~i~~~~~~i~~~ 175 (218)
|+++++++|.+.
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999998765
No 131
>KOG3883|consensus
Probab=99.93 E-value=3e-24 Score=144.87 Aligned_cols=176 Identities=20% Similarity=0.324 Sum_probs=145.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-hhhhHhhhccCC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-RAVTRSYYRGAA 89 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d 89 (218)
....||+|+|..++|||++++.++.+.... +..+|+...|....-+.++..-++.|+||.|.... ..+.++|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 456799999999999999999998665443 34455554443333334566679999999997766 668899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
++++||+..+++||+.+.-+-..|....+ ..+||++++||.|+.+++.+..+.+..|++...+.++++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999998777667776543 48999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCccccc
Q psy1169 169 FLETAKKIYQNIKDGKLNAN 188 (218)
Q Consensus 169 ~~~i~~~~~~~~~~~~~~~~ 188 (218)
|..+.+.+.+..+.+.++..
T Consensus 167 f~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 167 FTYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred HHHHHHhccCCcccccCcch
Confidence 99999998876665555443
No 132
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=157.85 Aligned_cols=169 Identities=38% Similarity=0.585 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|+.|||||||+++|.+..+...+.++.+..+...........+.+.+|||+|+++++.++..|+.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 39999999999999999999999999999999988887777776665688999999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHh---CCCcEEEec
Q psy1169 95 YDITR-RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEE---NDLIFVEAS 158 (218)
Q Consensus 95 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~---~~~~~~~~S 158 (218)
+|..+ ..+++....|...+........|+++++||+|+.... ............. ....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 5666777888888887765679999999999997653 2222222222222 233389999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHhhhcC
Q psy1169 159 AM--TGENVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 159 ~~--~~~~i~~~~~~i~~~~~~~~~~~ 183 (218)
++ .+.++.++|..++..+.+.....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 99 99999999999999997654433
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=2.6e-24 Score=154.90 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=107.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh---------hhhHhhhcc
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVTRSYYRG 87 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~ 87 (218)
+|+++|.+|+|||||+++|.+..+.....+..+.......+ ....+.+.||||||..... .........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999877643322222222222222 2245789999999974210 111111234
Q ss_pred CCEEEEEEECCChhhH--HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169 88 AAGALMVYDITRRSTY--NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV 165 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (218)
+|++|+|+|+++..++ +....|+..+.... .+.|+++|+||+|+.....+. ...++....+.+++++||+++.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence 6899999999987653 55566777665443 479999999999996654433 244555556788999999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 166 EQAFLETAKKI 176 (218)
Q Consensus 166 ~~~~~~i~~~~ 176 (218)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.9e-24 Score=155.96 Aligned_cols=157 Identities=16% Similarity=0.138 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----hhhhhHhh---hccCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSY---YRGAA 89 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 89 (218)
+|+++|.+|||||||+++|.+........+..+.+.....+.+.+ ...+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999986543221111112222222233332 24789999999632 11222333 44699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCH
Q psy1169 90 GALMVYDITRR-STYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENV 165 (218)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i 165 (218)
++++|+|+++. .+++.+..|.+.+..... .+.|+++|+||+|+....... .....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789999888887766532 368999999999996654432 334444444 4778999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 166 EQAFLETAKK 175 (218)
Q Consensus 166 ~~~~~~i~~~ 175 (218)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=8.2e-24 Score=166.56 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=119.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------hhhhhHhhhcc
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------FRAVTRSYYRG 87 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 87 (218)
...|.|+|.++||||||+++|..........+.++.......+.+. ....+.+||+||..+ +...+...++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 4579999999999999999998754332222333444434444442 234688999999642 22223334567
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV 165 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (218)
++++|+|+|+++.++++.+..|...+..+.. .+.|+++|+||+|+.............+....+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999998889999999888876543 36899999999999765544434455555556688999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1169 166 EQAFLETAKKIYQN 179 (218)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (218)
++++++|.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=6.5e-24 Score=153.58 Aligned_cols=155 Identities=21% Similarity=0.314 Sum_probs=114.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...++|+++|++|+|||||++++.+..+. ...++.+.+. ..+... ...+.+||++|...+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 34799999999999999999999887653 2344444332 233333 367889999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-----CCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-----DLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~ 166 (218)
+|+|+++..++.....++..+... ...++|+++++||.|+..... .++..+..... ..+++++||+++.|++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 999999998888877776655432 234799999999999864332 12222222111 1236899999999999
Q ss_pred HHHHHHHH
Q psy1169 167 QAFLETAK 174 (218)
Q Consensus 167 ~~~~~i~~ 174 (218)
++|++|.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999875
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=1.6e-23 Score=150.07 Aligned_cols=152 Identities=20% Similarity=0.209 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+.|+++|.+|||||||+++|.+. .+.....+..+.+.....+.+.. ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 35899999999999999999863 23333333334443334444432 457899999999988776777888999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHh---CCCcEEEeccCCCCC
Q psy1169 93 MVYDITR---RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEE---NDLIFVEASAMTGEN 164 (218)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~ 164 (218)
+|+|+++ .++.+.+. .+... ...|+++++||+|+..... ...++..++... .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 33333222 12211 1248999999999965421 112334444443 467899999999999
Q ss_pred HHHHHHHHHH
Q psy1169 165 VEQAFLETAK 174 (218)
Q Consensus 165 i~~~~~~i~~ 174 (218)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=6.5e-24 Score=148.77 Aligned_cols=134 Identities=20% Similarity=0.223 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh-----hhhhhhHhhhccCCEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-----RFRAVTRSYYRGAAGA 91 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 91 (218)
||+++|++|+|||||+++|.+..+. +.++.+.+ +. -.+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999877642 22332222 21 1589999973 2333333 57899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQAFL 170 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 170 (218)
|+|||++++.++.. ..|.... ..|+++++||+|+.+ +....+++.++++..+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999998755 2443321 248999999999864 23445666777777665 799999999999999998
Q ss_pred HHH
Q psy1169 171 ETA 173 (218)
Q Consensus 171 ~i~ 173 (218)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=7.6e-23 Score=144.02 Aligned_cols=153 Identities=47% Similarity=0.786 Sum_probs=121.9
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC
Q psy1169 20 IIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 98 (218)
Q Consensus 20 v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (218)
|+|++|+|||||++++.+... .....++. .+..............+.+||++|...+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998777 44444554 6666666666677889999999999888887788999999999999999
Q ss_pred ChhhHHHHHHHH-HHHhhhcCCCCeEEEEeeCCCCCCCccccHHH-HHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 99 RRSTYNHLSSWL-TDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE-AKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 99 ~~~s~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
++.++..+..|+ .........+.|+++++||.|+.......... ..........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999998888772 22333444689999999999986554433222 4445556788899999999999999999875
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.7e-23 Score=153.14 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE--QKFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (218)
-+|+++|.+++|||||+++|+. +.+...+ ..+.+.+.......+....+.+.+|||||++.|....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999987 4444332 1223334434444455566789999999999999999
Q ss_pred HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc-ccHHHHHHHHH-------hCCCc
Q psy1169 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD-VRYDEAKKFAE-------ENDLI 153 (218)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 153 (218)
..+++.+|++++|+|+++.. +.....++..+.. .++|+++++||+|+...+. ...+++.++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2223333433332 4689999999999965432 12234444442 23678
Q ss_pred EEEeccCCCCCHHHH------HHHHHHHHHHhhh
Q psy1169 154 FVEASAMTGENVEQA------FLETAKKIYQNIK 181 (218)
Q Consensus 154 ~~~~S~~~~~~i~~~------~~~i~~~~~~~~~ 181 (218)
++++||++|.|+.+. ++++++.+.++++
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 999999999877433 5666666666544
No 141
>KOG0070|consensus
Probab=99.91 E-value=3e-23 Score=145.15 Aligned_cols=162 Identities=19% Similarity=0.309 Sum_probs=130.8
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
.......+|+++|--+|||||++.+|..++.... .||.+.......+ .++.|.+||.+|++.++.+|..|+++.+
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCc
Confidence 3456789999999999999999999987776655 6777776544444 4789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CCCcEEEeccCCCC
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----NDLIFVEASAMTGE 163 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~ 163 (218)
++|||+|.+|++-+..+...+..+..... .+.|+++++||.|++..- +..++.+.... ....+..++|.+|+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 99999999999999888887776666554 589999999999996553 33444443332 33446789999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1169 164 NVEQAFLETAKKIYQ 178 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~ 178 (218)
|+.+.++++.+.+..
T Consensus 165 GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 165 GLYEGLDWLSNNLKK 179 (181)
T ss_pred cHHHHHHHHHHHHhc
Confidence 999999999988754
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=1.4e-22 Score=145.81 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
.|+|+|.+|+|||||+++|....+.....+..+.+.....+... .....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887766544444444333333332 13568899999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH-HHHHHHHH------hCCCcEEEeccCCCCCHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY-DEAKKFAE------ENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~------~~~~~~~~~S~~~~~~i~~~ 168 (218)
|+++....+... .+..+.. .+.|+++|+||+|+........ .....+.. ....+++++|++++.|++++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 999854322222 1222222 4689999999999864321111 11211111 12357999999999999999
Q ss_pred HHHHHHHHH
Q psy1169 169 FLETAKKIY 177 (218)
Q Consensus 169 ~~~i~~~~~ 177 (218)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=2.4e-23 Score=154.29 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=102.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc-----------hhhhhhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG-----------QERFRAVT 81 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~ 81 (218)
...++|+++|.+|+|||||+++|.+..+.....+..+. ....+.+. .+.+||||| .+.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~--~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR--KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee--CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 45689999999999999999999987765544443332 23333322 588999999 45666665
Q ss_pred Hhhhc----cCCEEEEEEECCChhhH-H---------HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH
Q psy1169 82 RSYYR----GAAGALMVYDITRRSTY-N---------HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA 147 (218)
Q Consensus 82 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 147 (218)
..++. .++++++|+|.+....+ + .-..++..+. ..++|+++|+||+|+.... .+...++.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 55554 45788888887653221 0 0011122222 2479999999999986543 23344444
Q ss_pred HhCCC---------cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 148 EENDL---------IFVEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 148 ~~~~~---------~~~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
...++ +++++||++| |+++++++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 44443 5899999999 999999999987644
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=2.3e-22 Score=158.29 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=115.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh----hhhhH---hhhc
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAVTR---SYYR 86 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~ 86 (218)
....|+|+|.++||||||+++|..........+.++.......+.+.+ ...+.|||+||..+. ..+.. ..++
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 346899999999999999999987653322222223333344444432 357889999997421 12223 3355
Q ss_pred cCCEEEEEEECCCh---hhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169 87 GAAGALMVYDITRR---STYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT 161 (218)
Q Consensus 87 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (218)
.++++|+|+|+++. .+++.+..|.+++..+.. .+.|+++|+||+|+..... ..+..+.+....+.+++++||++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence 79999999999986 678888888877765532 3689999999999965533 23445556666678899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKI 176 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (218)
+.|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999988754
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.9e-22 Score=143.65 Aligned_cols=147 Identities=19% Similarity=0.187 Sum_probs=108.4
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh------hhHhhhc--cCCEE
Q psy1169 20 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYYR--GAAGA 91 (218)
Q Consensus 20 v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~ 91 (218)
|+|.+|+|||||++++.+..+.....+..+.+.....+.+++ ..+.+|||||...+.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999988765444444445555455555554 4788999999876543 3455564 99999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|+|+|+.+.+... .|+..+.. .+.|+++++||+|+.....+. .....+....+.+++++|+.++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999865432 33333332 468999999999997654443 2345666667889999999999999999998
Q ss_pred HHHH
Q psy1169 172 TAKK 175 (218)
Q Consensus 172 i~~~ 175 (218)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.6e-22 Score=160.56 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=111.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch---------hhhhhhhHhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ---------ERFRAVTRSY 84 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~ 84 (218)
..++|+++|.+|+|||||+|+|.+..+.....+..+.+.....+.+++. ..+.+|||+|. +.|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999987654333333344555666666432 47889999996 2233322 34
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
+..+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.....+ ..+. ....+++++||+++.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCC
Confidence 789999999999999988877766666555544457899999999999643221 1111 2234689999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 165 VEQAFLETAKK 175 (218)
Q Consensus 165 i~~~~~~i~~~ 175 (218)
++++++.|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 147
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=9.3e-23 Score=138.63 Aligned_cols=115 Identities=33% Similarity=0.585 Sum_probs=87.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
||+|+|++|+|||||+++|.+..+. .......+.++.............+.+||++|.+.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 12223333444444555677777799999999998888777779999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCC
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMD 131 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~D 131 (218)
||++++++++.+..++..+.... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999866544443332 25699999999998
No 148
>KOG1673|consensus
Probab=99.90 E-value=7.5e-23 Score=138.47 Aligned_cols=165 Identities=25% Similarity=0.472 Sum_probs=145.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
-.+||.++|++..|||||+-.+.++.+.+++..+.+..+-.+.+.+.+..+.+.|||.+|++++..+.+-..+.+-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 35999999999999999999999999988888899999999999999999999999999999999988888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc-----cccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR-----DVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
+||++.+.++..+.+|+++.+...+.-+| ++|++|.|+--.- +.....++.+++.++++++.+|+..+.|+..+
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 99999999999999999998887766666 5789999863221 11224578888999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1169 169 FLETAKKIYQN 179 (218)
Q Consensus 169 ~~~i~~~~~~~ 179 (218)
|..++..++.-
T Consensus 178 FK~vlAklFnL 188 (205)
T KOG1673|consen 178 FKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHhCC
Confidence 99998888653
No 149
>KOG0075|consensus
Probab=99.90 E-value=5.5e-23 Score=137.81 Aligned_cols=158 Identities=20% Similarity=0.355 Sum_probs=126.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..+.+.++|..++|||||++.+..+.+.+...|+.++. +..++.+.+.+.+||.+|+..|+++|..|++++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn----mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccce----eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 35789999999999999999998888888888887754 44566788999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHH-HHHH----HHhCCCcEEEeccCCCCCHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDE-AKKF----AEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~~~~~S~~~~~~i~~ 167 (218)
|+|+.+++.+...+.-++.+..... .++|+++++||.|+.+. ..... +.++ .....+..|.+|+++..|++.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 9999999888777776666554332 48999999999998654 22221 1111 112344589999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 168 AFLETAKKIY 177 (218)
Q Consensus 168 ~~~~i~~~~~ 177 (218)
+.+|+++...
T Consensus 173 ~~~Wli~hsk 182 (186)
T KOG0075|consen 173 TLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHhh
Confidence 9999998654
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=6.9e-22 Score=152.53 Aligned_cols=153 Identities=25% Similarity=0.196 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh--------hhhhHhhhccC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--------RAVTRSYYRGA 88 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~~ 88 (218)
+|+++|.+|||||||+|+|++..+........++......+... ...++.+|||||.... ......++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999877543222111111112222222 2346899999996432 11234567899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQ 167 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~ 167 (218)
|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+..... .......+....+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999877664 333333332 4689999999999964322 22334444444444 789999999999999
Q ss_pred HHHHHHHHH
Q psy1169 168 AFLETAKKI 176 (218)
Q Consensus 168 ~~~~i~~~~ 176 (218)
+++++.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 998888765
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=2.7e-22 Score=145.37 Aligned_cols=155 Identities=21% Similarity=0.216 Sum_probs=107.0
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh----hhh---hHhhhccCCEEE
Q psy1169 20 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAV---TRSYYRGAAGAL 92 (218)
Q Consensus 20 v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~~i 92 (218)
++|++|||||||+++|.+........+..+.+.....+.+. ....+.+||+||.... ..+ ...+++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999876422222222222223333333 1456789999996321 112 234577899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHhhhcC-------CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169 93 MVYDITRR------STYNHLSSWLTDTKNLTN-------PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 93 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
+|+|+.+. .++..+..|...+..... .+.|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999998 577777777776654432 36899999999999765443322233444456777999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy1169 160 MTGENVEQAFLETAKK 175 (218)
Q Consensus 160 ~~~~~i~~~~~~i~~~ 175 (218)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988754
No 152
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=1.4e-22 Score=141.76 Aligned_cols=148 Identities=21% Similarity=0.230 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh------hhhhHhhh--cc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF------RAVTRSYY--RG 87 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~ 87 (218)
|+|+++|.|++|||||+|+|.+........+..+.+.....+.+.+ ..+.++|+||.... +.....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999998875555556666676666776665 56778899994321 23344444 68
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
.|++|+|+|+++.+.-. .+..++.. .+.|+++++||+|+...+... .+...+.+..++|++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999999854322 23333333 469999999999986655444 246677778899999999999999999
Q ss_pred HHHHH
Q psy1169 168 AFLET 172 (218)
Q Consensus 168 ~~~~i 172 (218)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98765
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=5.2e-22 Score=164.13 Aligned_cols=181 Identities=22% Similarity=0.202 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcch----------hhhhhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFRAVT 81 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 81 (218)
...++|+|+|.+|+|||||+++|++.... ....+.++.+.....+.+++.. +.+|||+|. +.+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHH
Confidence 35699999999999999999999987643 2333444455445555565544 569999994 3333332
Q ss_pred -HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHH-HHHhCCCcEEEe
Q psy1169 82 -RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKK-FAEENDLIFVEA 157 (218)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~ 157 (218)
..+++.+|++|+|+|+++..+++.+. ++..+.. .+.|+++|+||+|+...... ...+... +......+++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 34678999999999999998888774 3443332 57899999999999643211 1112221 222244689999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH---hhhcCcccccccccccccccC
Q psy1169 158 SAMTGENVEQAFLETAKKIYQ---NIKDGKLNANMTESGVQHKER 199 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 199 (218)
||++|.|++++|..+.+.+.+ +++...++....+....++++
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p 407 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPP 407 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999877643 344555555555544444443
No 154
>KOG0071|consensus
Probab=99.89 E-value=1.6e-21 Score=129.79 Aligned_cols=156 Identities=21% Similarity=0.374 Sum_probs=124.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..++|+++|..++||||++..|..+.. ....+|.++...... .+++.|.+||.+|++..+.+|++|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 378999999999999999999976553 334456665544333 377889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CCCcEEEeccCCCCCHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----NDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~ 167 (218)
|+|..+....+++++-+..+..... ...|++|.+||.|++... ..+++.++... ..+.+.++++.+++++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999999888888776666654432 478999999999997664 33566655543 345578999999999999
Q ss_pred HHHHHHHHH
Q psy1169 168 AFLETAKKI 176 (218)
Q Consensus 168 ~~~~i~~~~ 176 (218)
-|.|+.+.+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999998765
No 155
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=9.8e-22 Score=144.57 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC----CCCC---CCC--CceeeeEEEEEEE----------ECCeEEEEEEeeCcchhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ----KFMP---DCP--HTIGVEFGTRIIE----------VHGEKIKLQIWDTAGQER 76 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~----~~~~---~~~--~~~~~~~~~~~~~----------~~~~~~~~~i~D~~G~~~ 76 (218)
++|+++|+.++|||||+++|+.. .+.. +.. .+....+....+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 1111 111 2222222222222 113367889999999876
Q ss_pred hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHHHH------
Q psy1169 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKFAE------ 148 (218)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~------ 148 (218)
+..........+|++++|+|+.+....+....+. +... .+.|+++++||+|+...... ..++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444566789999999999865544433322 1121 25799999999998643221 1222222211
Q ss_pred -hCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 149 -ENDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 149 -~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
..+++++++||+++.|++++++++.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 24678999999999999999999988763
No 156
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=2.4e-21 Score=137.66 Aligned_cols=146 Identities=22% Similarity=0.209 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh--------hhHhhhc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSYYR 86 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 86 (218)
++|+++|++|+|||||++++.+..... ...+..+.+.....+... ...+.+|||||...+.. ....++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999998765421 222233333333344343 35678999999654321 2334677
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
.+|++++|+|+++..+......+.. ..+.|+++++||+|+...... .......+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999999877766544332 357899999999998654433 334456789999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 167 QAFLETAKKI 176 (218)
Q Consensus 167 ~~~~~i~~~~ 176 (218)
+++.+|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=2.2e-21 Score=142.04 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc----------------eeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT----------------IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (218)
+|+|+|.+|+|||||+++|++.......... .+....... .......+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVAT--FEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEE--EeeCCEEEEEEeCCCcHHHHHH
Confidence 4899999999999999999887665433221 112221222 2223567889999999988888
Q ss_pred hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHHHHh---------
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKFAEE--------- 149 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~--------- 149 (218)
+..++..+|++++|+|+.+..+.+.. .++..+.. .+.|+++++||+|+...... ....+.+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 88999999999999999987654433 33333332 57999999999999753222 12233333332
Q ss_pred -----CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 150 -----NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 150 -----~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
...+++++|++++.|++++++++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 356799999999999999999988775
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=3.5e-21 Score=157.01 Aligned_cols=153 Identities=23% Similarity=0.237 Sum_probs=114.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh--------hhH
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTR 82 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~ 82 (218)
+..++|+++|++|+|||||+|+|++... ...+ +..+.+.....+.+++ +.+.+|||||...+.. ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 4568999999999999999999998653 2333 3344555555566655 4568999999754332 124
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
.+++.+|++|+|||++++.+++.. |+..+. ..+.|+++|+||+|+... +...++...+.+++++|+++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence 578899999999999998887765 655443 246899999999998543 12344556677899999998
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy1169 163 ENVEQAFLETAKKIYQNI 180 (218)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~ 180 (218)
.|++++|+.+.+.+.+..
T Consensus 346 ~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFY 363 (442)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999999887765
No 159
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=2.3e-21 Score=153.63 Aligned_cols=157 Identities=23% Similarity=0.309 Sum_probs=105.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhh-------hhH
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRA-------VTR 82 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~-------~~~ 82 (218)
.+..++|+++|.+|||||||+++|++..+..... +..+.+.....+..++ .++.||||||... +.. ...
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 3566799999999999999999999877643111 1112222233344443 4679999999742 211 122
Q ss_pred hhhccCCEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEEEecc
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFVEASA 159 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S~ 159 (218)
..+..+|++|+|+|..+ ++.... .|+..+.. .+.|+++|+||+|+... ...+..+++.... ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 34789999999999766 333443 34444432 34677889999998543 2345555555433 57999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy1169 160 MTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~ 178 (218)
++|.|++++|++|.+.+.+
T Consensus 199 ktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred cCccCHHHHHHHHHHhCCC
Confidence 9999999999998876643
No 160
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=5.3e-21 Score=141.08 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=107.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch----------hhhhhh
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFRAV 80 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~ 80 (218)
..+..++|+++|.+|+|||||+++|++..+.....++.+.+........ ...+.||||||. +.+..+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4567799999999999999999999987654444444443332222222 257899999993 344555
Q ss_pred hHhhhccC---CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHHHHHHHHhCCCcEE
Q psy1169 81 TRSYYRGA---AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDEAKKFAEENDLIFV 155 (218)
Q Consensus 81 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~ 155 (218)
...+++.+ +++++++|...+.+.... .+...+. ..+.|+++++||.|+....+.. .+.+.........+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 55566544 577888998876443321 1122222 2468899999999986543221 1224344444467899
Q ss_pred EeccCCCCCHHHHHHHHHHHHH
Q psy1169 156 EASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 156 ~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
++|++++.|++++++.|.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999998877654
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=7.7e-21 Score=160.06 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=114.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCC------CceeeeEEEEE--EEE---CCeEEEEEEeeCcchhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCP------HTIGVEFGTRI--IEV---HGEKIKLQIWDTAGQER 76 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~ 76 (218)
.-+++++|+.++|||||+++|+... +...+. ...+.+..... +.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111111 11233333332 222 45678999999999999
Q ss_pred hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC---c
Q psy1169 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL---I 153 (218)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 153 (218)
|...+..++..+|++|+|+|+++..+.+....|..... .+.|+++++||+|+.... ......++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999999887777777654432 468999999999986432 11223344444444 3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q psy1169 154 FVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 154 ~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
++++||++|.|++++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999998765
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.87 E-value=5.8e-21 Score=135.97 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----hhhhhhHhhhccCCEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (218)
+|+++|.+|+|||||+++|.+... . ...+ ..+.+... .+||+||.. ++.......++.+|++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999875431 1 1111 12222222 269999962 22222233478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC--cEEEeccCCCCCHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL--IFVEASAMTGENVEQAFL 170 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~i~~~~~ 170 (218)
+|+|+++..++.. .|+..+ ..+.|+++++||.|+.+. ..+...+++...+. +++++||+++.|++++|+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999998877532 343332 246789999999998542 33556666666664 899999999999999999
Q ss_pred HHHHHHHHh
Q psy1169 171 ETAKKIYQN 179 (218)
Q Consensus 171 ~i~~~~~~~ 179 (218)
.+.+.+.+.
T Consensus 141 ~l~~~~~~~ 149 (158)
T PRK15467 141 YLASLTKQE 149 (158)
T ss_pred HHHHhchhh
Confidence 998777554
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=3.8e-21 Score=157.57 Aligned_cols=149 Identities=25% Similarity=0.245 Sum_probs=110.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh--------hHhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRSY 84 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 84 (218)
..++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++ ..+.+|||+|...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999986642 22233334455455555554 46789999997654321 2346
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
++.+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... .....+++++|++++.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 889999999999999888776544432 3568999999999996543221 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKIYQ 178 (218)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (218)
++++++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=6.1e-21 Score=135.61 Aligned_cols=145 Identities=19% Similarity=0.109 Sum_probs=98.5
Q ss_pred EEEcCCCCCHHHHHHHHHhCCC--CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh--------hhHhhhccC
Q psy1169 19 IIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSYYRGA 88 (218)
Q Consensus 19 ~v~G~~g~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~ 88 (218)
+++|.+|+|||||+++|.+... ..... ..+.+......... ...+.+|||||...+.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~-~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTP-GVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCC-CceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 4799999999999999987642 22222 22222223333333 36788999999876433 334567889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQ 167 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~ 167 (218)
|++++|+|..+..+.... .+.+.+.. .+.|+++|+||+|+...... .......+. .++++|++++.|+++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence 999999999876544332 12222222 35899999999999654322 222333444 689999999999999
Q ss_pred HHHHHHHH
Q psy1169 168 AFLETAKK 175 (218)
Q Consensus 168 ~~~~i~~~ 175 (218)
+++++.+.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999865
No 165
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=7.8e-21 Score=138.26 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=102.1
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch----------hh
Q psy1169 7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ER 76 (218)
Q Consensus 7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~ 76 (218)
..+.+....++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+..++ .+.+||+||. ..
T Consensus 10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~ 86 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEK 86 (179)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHH
Confidence 3455678889999999999999999999998764443333433333333333332 6889999994 23
Q ss_pred hhhhhHhhhcc---CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHhC-
Q psy1169 77 FRAVTRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEEN- 150 (218)
Q Consensus 77 ~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~- 150 (218)
+..+...+++. ++++++|+|++++.+.... .++..+.. .+.|+++++||+|+..... ...+++++.+...
T Consensus 87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 44444556553 5799999999886554444 22333332 4689999999999864322 1234455555553
Q ss_pred -CCcEEEeccCCCCCHH
Q psy1169 151 -DLIFVEASAMTGENVE 166 (218)
Q Consensus 151 -~~~~~~~S~~~~~~i~ 166 (218)
+..++++||+++.|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 3579999999999873
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=9.8e-21 Score=153.57 Aligned_cols=158 Identities=20% Similarity=0.156 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--hhhhh------Hhhhcc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVT------RSYYRG 87 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~------~~~~~~ 87 (218)
++|+++|.+|||||||+|+|.+........+..+.+.....+.+.+. ..+.+|||+|... ...++ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 68999999999999999999986654333334444554555555442 2567999999732 12222 234688
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCCCCCHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVE 166 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~ 166 (218)
+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+...... ... . ...+.+ ++++||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~~-~-~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RID-R-DEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HHH-H-HhcCCCceEEEeCCCCCCHH
Confidence 999999999999988877765555444444457899999999998643211 111 1 123444 5889999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
++++++.+.+...
T Consensus 352 eL~e~I~~~l~~~ 364 (426)
T PRK11058 352 LLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999888554
No 167
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=2.9e-20 Score=150.04 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----hhhhhHhh---hccC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSY---YRGA 88 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~ 88 (218)
..|+|+|.++||||||+++|..........+.++.......+.+. ....+.+||+||... ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 489999999999999999998765332222333333333333332 135788999999642 11233333 4569
Q ss_pred CEEEEEEECCCh---hhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169 89 AGALMVYDITRR---STYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE 163 (218)
Q Consensus 89 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (218)
+++|+|+|+++. ..++.+..|...+..+.. .+.|++||+||+|+... .+....+....+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999865 667777777777766542 37899999999998432 234455555556789999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy1169 164 NVEQAFLETAKKIYQN 179 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (218)
|++++++++.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998877554
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=1.8e-20 Score=157.22 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=113.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
..+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+.+++. ..+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 356689999999999999999999988776655554555544444444332 2788999999999999998899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC---------CCcEEEeccCCC
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN---------DLIFVEASAMTG 162 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~ 162 (218)
|+|+|+++....+....+ ......++|+++++||+|+.... .+.+...+... ..+++++||++|
T Consensus 163 ILVVda~dgv~~qT~e~i----~~~~~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI----SHAKAANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHHcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 999999875433333222 22222578999999999985432 23333333221 246999999999
Q ss_pred CCHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAK 174 (218)
Q Consensus 163 ~~i~~~~~~i~~ 174 (218)
.|++++|+++..
T Consensus 236 eGI~eLl~~I~~ 247 (587)
T TIGR00487 236 DGIDELLDMILL 247 (587)
T ss_pred CChHHHHHhhhh
Confidence 999999999874
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2.4e-20 Score=152.38 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=110.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------hhhhhHhhhc
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------FRAVTRSYYR 86 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 86 (218)
...+|+|+|.++||||||+++|..........+.++.......+.+.+ ..|.|||+||... .....-.++.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 356899999999999999999987544322223333333344444433 5788999999532 1111223467
Q ss_pred cCCEEEEEEECCCh----hhHHHHHHHHHHHhhhc-----------CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC
Q psy1169 87 GAAGALMVYDITRR----STYNHLSSWLTDTKNLT-----------NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND 151 (218)
Q Consensus 87 ~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (218)
.+|++|+|+|+++. ..++.+..+...+..+. -.+.|++||+||+|+.+..... +.........+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcC
Confidence 89999999999863 34455555544444332 1368999999999996544322 23333334457
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHHhh
Q psy1169 152 LIFVEASAMTGENVEQAFLETAKKIYQNI 180 (218)
Q Consensus 152 ~~~~~~S~~~~~~i~~~~~~i~~~~~~~~ 180 (218)
++++++||+++.|+++++.+|.+.+....
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 88999999999999999999998876643
No 170
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.3e-20 Score=155.85 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=106.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhHhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSY 84 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 84 (218)
...+|+|+|.+|||||||+++|++..... ...+..+.+.....+.+.+ ..+.+|||+|.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34799999999999999999999865432 2233333333333444444 3578999999652 34445667
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
++.+|++|+|+|+++..++.. ..+...+.. .+.|+++|+||+|+.... .+....+....+ ..+++||++|.|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g 186 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG 186 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence 899999999999999866543 234433332 579999999999985432 122222222233 347999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKIYQ 178 (218)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (218)
++++|+++++.+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999988744
No 171
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=2.5e-20 Score=138.08 Aligned_cols=158 Identities=21% Similarity=0.240 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEEEEE-------------------------C--C----
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKF---MPDCPHTIGVEFGTRIIEV-------------------------H--G---- 61 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~--~---- 61 (218)
++|+++|+.|+|||||++.+.+... ..+.....+.......+.+ . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999965411 1111111111111001000 0 0
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-- 138 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-- 138 (218)
....+.|||+||++.+.......+..+|++++|+|+.++. ..+... .+..+... ...|+++++||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHc--CCCcEEEEEEchhccCHHHHHH
Confidence 1267899999999988887777888999999999999742 111111 22222221 22478999999999643221
Q ss_pred cHHHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 139 RYDEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 139 ~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
..+.+++++.. .+.+++++||+++.|++++++.+.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 11334444433 256799999999999999998887654
No 172
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=7e-20 Score=150.47 Aligned_cols=159 Identities=24% Similarity=0.161 Sum_probs=108.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-----------h
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-----------V 80 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~ 80 (218)
...++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++. .+.+|||||...... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 45689999999999999999999976532 122222333333334444443 678999999643221 1
Q ss_pred hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHH-h----CCCcEE
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-E----NDLIFV 155 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~ 155 (218)
...+++.+|++|+|+|++++.+.+... ++..+.. .+.|+++|+||+|+.... ...++...... . ..++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 234678999999999999987776653 3333332 468999999999996221 11122222221 1 357899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHH
Q psy1169 156 EASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 156 ~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
++||++|.|++++|+++.+.+.+
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 173
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=4e-20 Score=157.37 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=113.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE--EEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG--TRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
..+...|+|+|..++|||||+++|....+.....+..+.+.. ...+...+....+.||||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 456789999999999999999999887665543333332222 222333345688999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-------HhC--CCcEEEeccC
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-------EEN--DLIFVEASAM 160 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~S~~ 160 (218)
++|+|+|+++....+....|. .+ ...++|+++++||+|+.... .+.+.... ..+ .++++++||+
T Consensus 321 iaILVVDA~dGv~~QT~E~I~-~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN-YI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH-HH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 999999998854433333221 12 23578999999999986532 12222211 122 3689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAKKI 176 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (218)
+|.|++++|+.+....
T Consensus 394 tG~GIdeLle~I~~l~ 409 (742)
T CHL00189 394 QGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCHHHHHHhhhhhh
Confidence 9999999999887653
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.85 E-value=6.2e-20 Score=131.43 Aligned_cols=156 Identities=24% Similarity=0.200 Sum_probs=102.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh--------hhhHhhhc
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTRSYYR 86 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 86 (218)
..+|+++|++|+|||||+++|++.................... .......+.+||+||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998865432222111111111111 22334678899999964322 23445678
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCCH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENV 165 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i 165 (218)
.+|++++|+|+.+..+. ....+...+.. .+.|+++++||+|+........+....+.... ..+++++|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 99999999999987221 11122233322 36899999999999743333333344444444 367999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 166 EQAFLETAKK 175 (218)
Q Consensus 166 ~~~~~~i~~~ 175 (218)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 175
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=6.8e-20 Score=143.21 Aligned_cols=159 Identities=23% Similarity=0.193 Sum_probs=105.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh--------hhhhHhhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--------RAVTRSYY 85 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~ 85 (218)
..-.|+|+|.+|||||||+|+|++...........+.......+... ...++.+|||||.... .......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 34569999999999999999999876543322222222222222222 3368899999995432 22344567
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCC
Q psy1169 86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGEN 164 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~ 164 (218)
..+|++++|+|+++..+. .....+..+. ..+.|+++|+||+|+.............+.... ...++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 899999999999983221 1112222222 246899999999999744333334455555543 35699999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKIY 177 (218)
Q Consensus 165 i~~~~~~i~~~~~ 177 (218)
++++++++.+.+.
T Consensus 159 v~~L~~~L~~~l~ 171 (292)
T PRK00089 159 VDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhCC
Confidence 9999998887763
No 176
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.5e-19 Score=130.45 Aligned_cols=155 Identities=25% Similarity=0.173 Sum_probs=102.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh----------h-hhhH
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----------R-AVTR 82 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~-~~~~ 82 (218)
.++|+++|.+|+|||||+++|++..... ...+..........+..++ ..+.+||+||.... . ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999998765322 1122222222233333443 34679999996432 1 1112
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-HhC----CCcEEEe
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-EEN----DLIFVEA 157 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~ 157 (218)
..+..+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+...+....+...+.. ... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 356789999999999998776543 23332222 46899999999999765423223322333 222 4679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy1169 158 SAMTGENVEQAFLETAKK 175 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~ 175 (218)
|++++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999888653
No 177
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1.3e-19 Score=145.47 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-------hhhhHhhhcc
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-------RAVTRSYYRG 87 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 87 (218)
...|+|+|.++||||||+|+|..........+.++.......+.+. ....+.++|+||.... .......+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 3489999999999999999998765433323333333333344433 2235889999996431 1112235788
Q ss_pred CCEEEEEEECC---ChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEEEeccC
Q psy1169 88 AAGALMVYDIT---RRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFVEASAM 160 (218)
Q Consensus 88 ~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S~~ 160 (218)
+|++++|+|++ ....++.+..|++.+..+.. .+.|+++|+||+|+.....+ .+....+....+ .+++++||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999998 45667777777777665432 36899999999998654332 234444444433 468999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~ 178 (218)
++.+++++++.|.+.+.+
T Consensus 317 tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCcCHHHHHHHHHHHhhh
Confidence 999999999999887754
No 178
>KOG4423|consensus
Probab=99.85 E-value=3.5e-23 Score=144.19 Aligned_cols=168 Identities=35% Similarity=0.606 Sum_probs=144.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe-EEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
..+.+|+.|+|..|+|||+++.+++...++..+..+++.++..+....+.. .+.+.+||+.|+++|..+...|++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 678999999999999999999999999999899999999888777766543 4688899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhc----CCCCeEEEEeeCCCCCCCcccc-HHHHHHHHHhCCCc-EEEeccCCCCC
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLT----NPNTVIFLIGNKMDLEGSRDVR-YDEAKKFAEENDLI-FVEASAMTGEN 164 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~-~~~~S~~~~~~ 164 (218)
..+|||++...+|+....|.+.+.... +..+|+++.+||+|+....... .....++.+++++. .+++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999998776533 2467799999999986543322 35677788888876 99999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1169 165 VEQAFLETAKKIYQN 179 (218)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (218)
++|+-..+++.++-.
T Consensus 182 i~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 182 IPEAQRELVEKILVN 196 (229)
T ss_pred hhHHHHHHHHHHHhh
Confidence 999999999988664
No 179
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=1.1e-19 Score=134.47 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC-CEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA-AGALMVY 95 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 95 (218)
+|+++|++|+|||||+++|....+.....++ .................+.+||+||+..+...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776554333 2222222222223456789999999999988888899998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHhhh---cCCCCeEEEEeeCCCCCCC
Q psy1169 96 DITRR-STYNHLSSWLTDTKNL---TNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 96 d~~~~-~s~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~ 135 (218)
|+.+. .++..+..|+..+... ...++|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99997 6777776666554322 2358999999999998654
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=8.4e-20 Score=153.72 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+.|+++|..++|||||+++|.+. .+..++.+..+.+.....+..++ ..+.|||+||++.|......++..+|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999863 34444555566665555555554 78899999999999888888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccc--cHHHHHHHHHhC----CCcEEEeccCCCCCH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV--RYDEAKKFAEEN----DLIFVEASAMTGENV 165 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~~~~i 165 (218)
+|+|+++....+... .+..+.. .++| +++++||+|+.+.... ..+++..++... +.+++++|+++|.|+
T Consensus 79 LVVDa~~G~~~qT~e-hl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 79 LVVDADEGVMTQTGE-HLAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence 999999843222221 1222222 3567 9999999999754322 123455555443 578999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1169 166 EQAFLETAKKIYQ 178 (218)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (218)
++++..+.+.+..
T Consensus 155 ~eL~~~L~~l~~~ 167 (581)
T TIGR00475 155 GELKKELKNLLES 167 (581)
T ss_pred hhHHHHHHHHHHh
Confidence 9999888766543
No 181
>KOG0096|consensus
Probab=99.85 E-value=6.7e-21 Score=133.26 Aligned_cols=162 Identities=31% Similarity=0.578 Sum_probs=140.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...++++++|..|.||||++++.+.++|...+.++.+.......+..+.+.+.+..|||+|++.+..+...|+-.....|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45899999999999999999999999999999999999877766655555799999999999999998888988999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
++||+...-++.++..|.+.+...+ .++||++++||.|..... + ......+....++.|+++|++.+.|.+.-|-++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~-~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK-V-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc-c-ccccceeeecccceeEEeecccccccccchHHH
Confidence 9999999999999999999988877 459999999999985443 1 123334555678899999999999999999999
Q ss_pred HHHHH
Q psy1169 173 AKKIY 177 (218)
Q Consensus 173 ~~~~~ 177 (218)
.+.+.
T Consensus 165 arKl~ 169 (216)
T KOG0096|consen 165 ARKLT 169 (216)
T ss_pred hhhhc
Confidence 88774
No 182
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=1.5e-19 Score=152.41 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=113.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CC------CCceeeeEEEE--EEEE---CCeEEEEEEeeCcch
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP-----DC------PHTIGVEFGTR--IIEV---HGEKIKLQIWDTAGQ 74 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~~-----~~------~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~G~ 74 (218)
++.-+++|+|+.++|||||+.+|+... +.. .. ....+.+.... .+.+ ++..+.+.||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456789999999999999999998632 111 00 01112222222 2222 455789999999999
Q ss_pred hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-
Q psy1169 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI- 153 (218)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (218)
.+|...+..++..+|++|+|+|+++....+....|.... ..+.|+++|+||+|+..... .....++....++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence 999998999999999999999999987766666665432 24689999999999854321 12223333334443
Q ss_pred --EEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 154 --FVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 154 --~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
++++||++|.|+++++++|.+.+-
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999987764
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=1.1e-19 Score=156.02 Aligned_cols=155 Identities=23% Similarity=0.275 Sum_probs=112.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
..+...|+|+|..++|||||+++|....+.....+..+.+.....+.+++ ..+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 46778999999999999999999988776654444444444333444443 5788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH-------HHHhC--CCcEEEeccCCC
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK-------FAEEN--DLIFVEASAMTG 162 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-------~~~~~--~~~~~~~S~~~~ 162 (218)
|+|+|+++...-+....| ......++|++|++||+|+.... .+.+.. +...+ .++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999999985433333222 22223579999999999996432 111111 12222 368999999999
Q ss_pred CCHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKK 175 (218)
Q Consensus 163 ~~i~~~~~~i~~~ 175 (218)
.|++++|++|...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999998753
No 184
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=4e-20 Score=135.51 Aligned_cols=159 Identities=23% Similarity=0.237 Sum_probs=106.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC------------------CCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD------------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
..++|+++|+.++|||||+++|+....... .....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999985332110 00112222222222212455688899999999
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHH-HHHHhC---
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAK-KFAEEN--- 150 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~-~~~~~~--- 150 (218)
.|.......+..+|++|+|+|+.+....+.... +..+.. .++|+++++||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~-l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEH-LKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHH-HHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccccccc-cccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 988888888999999999999998755443332 333333 46889999999998722110 011222 333322
Q ss_pred ---CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 151 ---DLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 151 ---~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
..+++++||++|.|++++++.+.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999998887654
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=1.1e-19 Score=153.11 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=108.5
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh------hHhhh--ccCCEEEE
Q psy1169 22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV------TRSYY--RGAAGALM 93 (218)
Q Consensus 22 G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 93 (218)
|++|+|||||+|++.+........+..+.+.....+.+++ ..+.+|||||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776555555566666555555554 35789999998765432 33343 37899999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
|+|.++.+.. ..+..++. ..+.|+++++||+|+.+.+... .+.+.+.+..+++++++||+++.|++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875432 22222222 2579999999999996655444 456778888899999999999999999999998
Q ss_pred HHH
Q psy1169 174 KKI 176 (218)
Q Consensus 174 ~~~ 176 (218)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 754
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=3.6e-19 Score=134.14 Aligned_cols=160 Identities=22% Similarity=0.168 Sum_probs=111.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh--------hhhhhhHhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTRSY 84 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~ 84 (218)
.+.--|+++|.|++|||||+|++++.+..-......+++...+.+... ...++.|+||||.- .+.......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 345679999999999999999999988776555555555545555333 47799999999943 234456667
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHH-HHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWL-TDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTG 162 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~ 162 (218)
+..+|+++||+|+.....- -..++ +.+.. .+.|+++++||.|..............+.... -..++++||+++
T Consensus 83 l~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred hccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 8899999999999985432 11222 22222 36899999999998766552223333333332 235899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKKIYQ 178 (218)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (218)
.|++.+.+.+...+-+
T Consensus 158 ~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 158 DNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999888777766533
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.6e-19 Score=128.24 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=103.0
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------hhhHhhhccCCEE
Q psy1169 20 IIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYRGAAGA 91 (218)
Q Consensus 20 v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~ 91 (218)
|+|+.|+|||||++++.+.... ................... ....+.+||+||..... .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999876544 2222222222222222221 14678899999976433 2445578899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH---HHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD---EAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
++|+|..+........ +..... ..+.|+++++||.|+......... ...........+++++|+.++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987765554 332222 357999999999998755433221 112233346778999999999999999
Q ss_pred HHHHHHH
Q psy1169 169 FLETAKK 175 (218)
Q Consensus 169 ~~~i~~~ 175 (218)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 188
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=9.3e-19 Score=122.51 Aligned_cols=156 Identities=22% Similarity=0.359 Sum_probs=117.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCC--------CCCC----CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF--------MPDC----PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 79 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (218)
.-...||+|+|+.++||||+++.+..... ..+. ..|...++....+ . ....+++++||||++|.-
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHHHHH
Confidence 34578999999999999999999976552 1111 1233333333222 1 235778999999999999
Q ss_pred hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC--CCcEEEe
Q psy1169 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN--DLIFVEA 157 (218)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~ 157 (218)
+|.-+.+++.++|+++|.+.+..+ .....+..+.... .+|++|+.||.|+... ++.+.++++.... .++++++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeee
Confidence 999999999999999999999998 4444444333322 2999999999999765 4446777766654 8899999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy1169 158 SAMTGENVEQAFLETAKK 175 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~ 175 (218)
++.++.+..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999988887755
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=4.4e-19 Score=145.93 Aligned_cols=146 Identities=22% Similarity=0.157 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhHhhhc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSYYR 86 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 86 (218)
++|+++|.+|||||||+++|.+.... ....+..+.+.....+.+.+ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999876532 12222233333344444544 6789999999875 2333456788
Q ss_pred cCCEEEEEEECCChhhHH--HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCCCC
Q psy1169 87 GAAGALMVYDITRRSTYN--HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGE 163 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 163 (218)
.+|++|+|+|+.+..+.. .+..|+. . .+.|+++|+||+|+.... ....++ ...++. ++++||.++.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998864432 2333332 2 368999999999974321 222222 234443 7999999999
Q ss_pred CHHHHHHHHHH
Q psy1169 164 NVEQAFLETAK 174 (218)
Q Consensus 164 ~i~~~~~~i~~ 174 (218)
|++++++.+.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999887
No 190
>KOG0076|consensus
Probab=99.83 E-value=6e-20 Score=126.76 Aligned_cols=162 Identities=26% Similarity=0.398 Sum_probs=120.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC---CC----CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK---FM----PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 84 (218)
....+.|+|+|.-++|||||+..+.... +. ....++.+.... ++.+. ...+.+||..|++..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 3456789999999999999998875321 11 122233333332 33333 5578899999999999999999
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhh-hcCCCCeEEEEeeCCCCCCCccccHHHHHHHH------HhCCCcEEEe
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA------EENDLIFVEA 157 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~ 157 (218)
|..++++|++||+++++-|+.....++.+.. ..-.++|+++.+||.|+.+..++ .+++... .....++.++
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~--~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA--AELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH--HHHHHHhhhhhhcCCccCccccc
Confidence 9999999999999999998887766555443 33368999999999999654332 3332222 2356779999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHh
Q psy1169 158 SAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
||++|.|+++...|++..+-.+
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999887654
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=5e-19 Score=152.83 Aligned_cols=172 Identities=23% Similarity=0.240 Sum_probs=115.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----------hhhhh-h
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAV-T 81 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~ 81 (218)
..++|+++|.+|||||||+++|++.... ....+.++.+.....+.+++.. +.+|||+|.. .+..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 1222333344444455565544 5689999953 22222 2
Q ss_pred HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-Hh----CCCcEEE
Q psy1169 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-EE----NDLIFVE 156 (218)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~~ 156 (218)
..+++.+|++|+|+|+++..+++...- +..+.. .+.|+++|+||+|+..... .+...... .. ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 345789999999999999988877643 333332 4689999999999964322 11122111 11 2346799
Q ss_pred eccCCCCCHHHHHHHHHHHHHHh---hhcCcccccccccc
Q psy1169 157 ASAMTGENVEQAFLETAKKIYQN---IKDGKLNANMTESG 193 (218)
Q Consensus 157 ~S~~~~~~i~~~~~~i~~~~~~~---~~~~~~~~~~~~~~ 193 (218)
+||++|.|++++++.+.+.+.+. +++..++.......
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~ 640 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQ 640 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Confidence 99999999999999998887652 34444444444333
No 192
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=8.9e-19 Score=143.95 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcch--------hhhhhhhHhhhcc
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ--------ERFRAVTRSYYRG 87 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 87 (218)
+|+++|.+|||||||+|+|++..... ...+..+.+.....+.+.+ ..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999765321 1222223333333444443 45889999995 3344556677899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVE 166 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~ 166 (218)
+|++++|+|..+..+.... .+...+.. .+.|+++|+||+|+...... ..++ ...++ .++++||.++.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChH
Confidence 9999999999886544332 22222322 36899999999998654321 1222 33455 68999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 167 QAFLETAKKI 176 (218)
Q Consensus 167 ~~~~~i~~~~ 176 (218)
++++.+.+.+
T Consensus 150 ~ll~~i~~~l 159 (429)
T TIGR03594 150 DLLDAILELL 159 (429)
T ss_pred HHHHHHHHhc
Confidence 9999888766
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=3.5e-18 Score=140.63 Aligned_cols=159 Identities=23% Similarity=0.189 Sum_probs=106.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----------hhh-h
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRA-V 80 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~-~ 80 (218)
...++|+|+|.+|+|||||+++|++.... ....+..+.+.....+...+ ..+.+|||||... +.. .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35799999999999999999999976532 22223333333233333333 4567899999532 111 1
Q ss_pred hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH----HhCCCcEEE
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA----EENDLIFVE 156 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~ 156 (218)
...+++.+|++|+|+|++++.+.+... ++..+.. .+.|+++++||+|+...... .+....+. ....+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence 224678999999999999987776653 3333332 46899999999998633211 11111111 224578999
Q ss_pred eccCCCCCHHHHHHHHHHHHHH
Q psy1169 157 ASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 157 ~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
+||+++.|++++++.+.+...+
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 194
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=2e-18 Score=148.85 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=110.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----------hhHhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VTRSY 84 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~ 84 (218)
.++|+++|.+|+|||||+|+|.+........+..+.+. +...+......+.+||+||..++.. ....+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~--k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVER--KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEee--EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 46899999999999999999987654333333333333 3333344566788999999865532 12233
Q ss_pred h--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 85 Y--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
+ ..+|++++|+|+++.+.. ..+..++.. .+.|+++++||+|+.+.+... .+.+++.+..+++++++|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence 3 479999999999986542 233333433 469999999999987555443 5567788888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKKI 176 (218)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (218)
.|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887654
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=2e-18 Score=144.77 Aligned_cols=157 Identities=21% Similarity=0.171 Sum_probs=103.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCce----eeeEEEEEE------------EECCeEEEEEEeeCcchhhhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI----GVEFGTRII------------EVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~~ 78 (218)
..-|+++|.+++|||||+++|.+..+........ +..+..... .++.....+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3469999999999999999999876654433222 111111100 000011248899999999999
Q ss_pred hhhHhhhccCCEEEEEEECCCh---hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc------------cHH--
Q psy1169 79 AVTRSYYRGAAGALMVYDITRR---STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV------------RYD-- 141 (218)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~------------~~~-- 141 (218)
.++..++..+|++++|+|+++. .+++.+. .+. ..++|+++++||+|+...... ...
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 9999999999999999999984 4433332 122 246899999999998632100 000
Q ss_pred ----------HHHHHHHh--------------CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 142 ----------EAKKFAEE--------------NDLIFVEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 142 ----------~~~~~~~~--------------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
....+... ...+++++||++|.|+++++.++......
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 01111111 24679999999999999999988765443
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=3.3e-18 Score=147.75 Aligned_cols=156 Identities=19% Similarity=0.115 Sum_probs=103.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhH
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTR 82 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~ 82 (218)
.....+|+|+|.++||||||+|+|++..... ...+..+.+......... ...+.+|||+|.+. +.....
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--GTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--CEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 3455789999999999999999999765321 222222223222222222 35688999999652 334455
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHH-HHhCCCcEEEeccCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF-AEENDLIFVEASAMT 161 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~S~~~ 161 (218)
.++..+|++|+|+|+.+...... ..|...+.. .+.|+++|+||+|+.... .....+ ....+ ..+++||++
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~lg~~-~~~~iSA~~ 420 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWKLGLG-EPYPISAMH 420 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHHcCCC-CeEEEECCC
Confidence 67889999999999987533221 134433332 579999999999985432 112222 22222 357999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKIYQ 178 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (218)
|.|++++|+++++.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999987743
No 197
>KOG0074|consensus
Probab=99.80 E-value=6e-19 Score=117.81 Aligned_cols=158 Identities=21% Similarity=0.297 Sum_probs=115.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
..+.+||+++|--++|||||+..|.+... ....++.++.... +.+. ..+.+.+||++|+...+..|.+|+.++|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~--v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKK--VEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEE--Eeec-CcEEEEEEecCCccccchhhhhhhhccceE
Confidence 47899999999999999999999865443 3344555555433 3232 568999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhh-hcCCCCeEEEEeeCCCCCCCccccHHHHHHH----HHhCCCcEEEeccCCCCCHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF----AEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~S~~~~~~i~ 166 (218)
|||+|.++..-|+++..-+-.+.. ..-..+|+.+.+||.|+.....+. +.+..+ .....+-+-++|++.+.++.
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-eia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-HHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 999999998888877554443333 223579999999999986554332 112111 11123346789999999988
Q ss_pred HHHHHHHH
Q psy1169 167 QAFLETAK 174 (218)
Q Consensus 167 ~~~~~i~~ 174 (218)
.-.+|+..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 88777763
No 198
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=3.9e-18 Score=122.34 Aligned_cols=150 Identities=20% Similarity=0.289 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----------hhhhhhHhhhc
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAVTRSYYR 86 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~ 86 (218)
+|+++|++|+|||||++.+.+..+.....++.+.+.....+..+. .+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555444444444443333333333 78899999943 23344444544
Q ss_pred ---cCCEEEEEEECCChhhH--HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHHHH--hCCCcEEEe
Q psy1169 87 ---GAAGALMVYDITRRSTY--NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKFAE--ENDLIFVEA 157 (218)
Q Consensus 87 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~ 157 (218)
.++++++++|.....+. ..+..|+.. .+.|+++++||+|+...... .......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45678899999876332 223334322 24889999999998543221 1122333332 345679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy1169 158 SAMTGENVEQAFLETAKK 175 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~ 175 (218)
|++++.++++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 199
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=3.4e-18 Score=143.88 Aligned_cols=156 Identities=20% Similarity=0.236 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhH
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ--KFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR 82 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (218)
+|+|+|..++|||||+++|+.. .+.... ....+.+.......+....+.+.||||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999862 222211 01123333333333444567889999999999998889
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHH-------hCCCcE
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAE-------ENDLIF 154 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~ 154 (218)
.++..+|++|+|+|+.+.. ......|+..+.. .++|+++++||+|+...+.. ..+++..+.. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998753 2333455554443 46899999999998654321 1233334432 235789
Q ss_pred EEeccCCCC----------CHHHHHHHHHHHH
Q psy1169 155 VEASAMTGE----------NVEQAFLETAKKI 176 (218)
Q Consensus 155 ~~~S~~~~~----------~i~~~~~~i~~~~ 176 (218)
+++||+++. ++..+|+.+++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999995 7888888777665
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=2.7e-18 Score=140.60 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=102.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeeEEEEEEEEC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-----------------------------DCPHTIGVEFGTRIIEVH 60 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 60 (218)
....++|+++|..++|||||+.+|+. +.... +.....+.+... ..+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence 35679999999999999999999985 22110 112233333333 3344
Q ss_pred CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHH--HHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL--SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
...+.+.|||+||++.|.......+..+|++|+|+|+++.+++... ..++. +.... ...|+++++||+|+....+.
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHH
Confidence 4567899999999998876666677899999999999998543111 11111 12222 23578999999999642221
Q ss_pred ----cHHHHHHHHHhCC-----CcEEEeccCCCCCHHHHH
Q psy1169 139 ----RYDEAKKFAEEND-----LIFVEASAMTGENVEQAF 169 (218)
Q Consensus 139 ----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~ 169 (218)
...++.+++...+ ++++++||+++.|+.+.+
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1234555665543 579999999999998744
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=1.6e-17 Score=125.40 Aligned_cols=151 Identities=24% Similarity=0.185 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------hhhHhhhccCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYRGAA 89 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 89 (218)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... .....+++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999997653322222223333344444443 578899999964321 12345788999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHHhh-----------------------------------------h-----------
Q psy1169 90 GALMVYDITRRS-TYNHLSSWLTDTKN-----------------------------------------L----------- 116 (218)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~~~~~~-----------------------------------------~----------- 116 (218)
++++|+|+++.+ ..+.+...+..... +
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 33333333221100 0
Q ss_pred -----------c--CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 117 -----------T--NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 117 -----------~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
. ..-+|+++|+||+|+... ++...++.. ..++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 013689999999998532 444445443 4589999999999999999888754
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=1.1e-17 Score=140.75 Aligned_cols=159 Identities=17% Similarity=0.193 Sum_probs=111.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE--QKFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 79 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (218)
..-+|+|+|..++|||||+++|+. +.+.... ....+.+.......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467899999999999999999986 3332211 12344555555555556678999999999999999
Q ss_pred hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHH-------hCC
Q psy1169 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAE-------END 151 (218)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~ 151 (218)
.+..+++.+|++|+|+|+.+....+.. .++..+.. .++|.++++||+|+...+.. ..+++..+.. ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999886443332 23333322 46889999999998654321 1233333332 235
Q ss_pred CcEEEeccCCCC----------CHHHHHHHHHHHH
Q psy1169 152 LIFVEASAMTGE----------NVEQAFLETAKKI 176 (218)
Q Consensus 152 ~~~~~~S~~~~~----------~i~~~~~~i~~~~ 176 (218)
++++.+||++|. ++..+|+.|++.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 779999999997 4666666555544
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=4.3e-18 Score=126.63 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-------------------------------CCCceeeeEEEEEEEECCeEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPD-------------------------------CPHTIGVEFGTRIIEVHGEKIK 65 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 65 (218)
||+|+|.+|+|||||+++|+...-... ..+..+.+..... +......
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--FSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE--EecCCce
Confidence 589999999999999999975321100 0112222222222 2234457
Q ss_pred EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc----HH
Q psy1169 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR----YD 141 (218)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~ 141 (218)
+.||||||++.|.......+..+|++|+|+|+++...-+... ....+.. . ...++++|+||+|+....... ..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~-~-~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSL-L-GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHH-c-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 789999999887766666789999999999998764322221 1222222 1 123578899999986432211 12
Q ss_pred HHHHHHHhCC---CcEEEeccCCCCCHHH
Q psy1169 142 EAKKFAEEND---LIFVEASAMTGENVEQ 167 (218)
Q Consensus 142 ~~~~~~~~~~---~~~~~~S~~~~~~i~~ 167 (218)
+...+....+ .+++++||+++.|+.+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 3444445544 4589999999999875
No 204
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=3.8e-17 Score=119.90 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=96.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP--------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (218)
.++|+++|..++|||||+++|+...... ......+.........++....++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999998531000 00001222222333344445567889999999888777
Q ss_pred hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhC-----C
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEN-----D 151 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~ 151 (218)
....+..+|++++|+|+.....-+.. ..+..+.. .++| +++++||+|+....... .+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 77788899999999999875433322 22333332 3566 77899999986432211 12344444432 4
Q ss_pred CcEEEeccCCCCCHH
Q psy1169 152 LIFVEASAMTGENVE 166 (218)
Q Consensus 152 ~~~~~~S~~~~~~i~ 166 (218)
++++++||++|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998853
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.78 E-value=1.2e-17 Score=114.46 Aligned_cols=135 Identities=24% Similarity=0.299 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----hhhhhhHhhhccCCEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (218)
||+++|+.|+|||||+++|.+... .+..|....+. =.++||||.. .+..........+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999987654 33333322221 1257999943 33333444556899999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCCCCCHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~~~~ 171 (218)
++.|++++.+.-. ..+... -+.|+|-|+||+|+... ....+.++++....++. +|++|+.++.|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999999754211 111121 25789999999999733 23457777888776665 899999999999999887
Q ss_pred HH
Q psy1169 172 TA 173 (218)
Q Consensus 172 i~ 173 (218)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 64
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.78 E-value=4.9e-18 Score=139.10 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=99.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCceeeeEEEEEEEEC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-------------------------------PDCPHTIGVEFGTRIIEVH 60 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 60 (218)
....++|+++|.+++|||||+++|+...-. .+..+..+.+ .....++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d--~~~~~~~ 80 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTID--LAHKKFE 80 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccce--eeeEEEe
Confidence 456799999999999999999999842211 0111222222 2333344
Q ss_pred CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCC--hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR--RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
...+.+.||||||++.|.......+..+|++|+|+|+++ ...-+.. .++..+.. . ...|+++++||+|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~-~~~~~~~~-~-~~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR-EHVFLART-L-GINQLIVAINKMDAVNYDEK 157 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH-HHHHHHHH-c-CCCeEEEEEEccccccccHH
Confidence 456789999999998876655555788999999999987 3222221 22222222 1 12468999999999652211
Q ss_pred ----cHHHHHHHHHhCC-----CcEEEeccCCCCCHHHHH
Q psy1169 139 ----RYDEAKKFAEEND-----LIFVEASAMTGENVEQAF 169 (218)
Q Consensus 139 ----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~ 169 (218)
..+++.+++...+ .+++++||++|.|+++..
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1234445554433 569999999999998754
No 207
>KOG0072|consensus
Probab=99.78 E-value=8e-19 Score=117.54 Aligned_cols=162 Identities=21% Similarity=0.283 Sum_probs=116.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
++...+|+++|.-|+||||++-++.-++... ..|++++... .++.+++.+.+||..|+-..+..|+.|+.+.|++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve----~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVE----TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcc----ccccccccceeeEccCcccccHHHHHHhcccceE
Confidence 4578999999999999999998886555432 3344444332 2344778999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHh-hhcCCCCeEEEEeeCCCCCCCccc---cHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLEGSRDV---RYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
|||+|.+|..........+..+. ...-....+++++||.|+...... .......-.+..-+.++++||.++.|++.
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 99999999876655544333332 222245778899999998543211 11111111223346699999999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 168 AFLETAKKIYQ 178 (218)
Q Consensus 168 ~~~~i~~~~~~ 178 (218)
+++|+.+-+.+
T Consensus 170 ~~DWL~~~l~~ 180 (182)
T KOG0072|consen 170 AMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999988765
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.77 E-value=9.9e-18 Score=136.22 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=103.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCceeeeEEEEE--------------EEE----CC------eEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRI--------------IEV----HG------EKIK 65 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 65 (218)
+..++|+++|..++|||||+++|.+.... ++.....+....... +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999643211 111111111111000 000 11 1357
Q ss_pred EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHH
Q psy1169 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDE 142 (218)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~ 142 (218)
+.+||+||++.|..........+|++|+|+|+++.. ..+.. ..+..+... ...|+++++||+|+...... ..++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 899999999999887777888899999999999753 21222 222222221 12468999999999654321 1233
Q ss_pred HHHHHHhC---CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 143 AKKFAEEN---DLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 143 ~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
+..+.... +++++++||+++.|+++++++|...+
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 44444432 67899999999999999998888654
No 209
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=117.34 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=116.1
Q ss_pred ccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc----------
Q psy1169 4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG---------- 73 (218)
Q Consensus 4 ~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---------- 73 (218)
+....+.|.+....|+++|.++||||||||+|++.+.-.-...+.+.+.....+.+++. +.++|.||
T Consensus 13 a~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~ 89 (200)
T COG0218 13 APDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEV 89 (200)
T ss_pred cCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHH
Confidence 34445667778899999999999999999999997754445556666666666666554 77899999
Q ss_pred hhhhhhhhHhhhcc---CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--HHHH-HHH
Q psy1169 74 QERFRAVTRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--DEAK-KFA 147 (218)
Q Consensus 74 ~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~-~~~ 147 (218)
.+.+..+...|++. ..++++++|+.....-.+. ..++.+. ..++|+++++||+|.....+... ..+. .+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~---~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLL---ELGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHH---HcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 34566677777653 4567889999887554332 2222233 25799999999999876554431 2222 222
Q ss_pred HhCCCc--EEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 148 EENDLI--FVEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 148 ~~~~~~--~~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
...... ++..|+..+.|++++...|.+.+.+
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222222 7889999999999999888876643
No 210
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=1.9e-17 Score=134.50 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=102.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEEEEE------------------C--C----eE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKF---MPDCPHTIGVEFGTRIIEV------------------H--G----EK 63 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~~ 63 (218)
.....++|+++|+.++|||||+.+|.+... ..+..+..+.........+ + + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 345669999999999999999999954211 1111111222211100000 0 0 13
Q ss_pred EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cH
Q psy1169 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RY 140 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~ 140 (218)
..+.|||+||++.|..........+|++++|+|+.++. ..+....+ ..+... ...|+++++||+|+...... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 57899999999888765555566789999999999653 22222222 122221 12468999999999654322 12
Q ss_pred HHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 141 DEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 141 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
+++..++.. .+.+++++||+++.|++++++.|.+.+
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 344444433 257899999999999999998887655
No 211
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=5e-17 Score=136.83 Aligned_cols=156 Identities=22% Similarity=0.227 Sum_probs=101.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc----eeeeEEEEEEE--ECCeE-----E-----EEEEeeCcchhhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT----IGVEFGTRIIE--VHGEK-----I-----KLQIWDTAGQERF 77 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~~ 77 (218)
+...|+++|..++|||||+++|.+.......... .+..+...... ..+.. . .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4457999999999999999999866544333322 22111111000 00111 1 2689999999999
Q ss_pred hhhhHhhhccCCEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc----cH--------H-
Q psy1169 78 RAVTRSYYRGAAGALMVYDITR---RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV----RY--------D- 141 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~--------~- 141 (218)
..++...+..+|++|+|+|+++ +.+++.+.. +. ..++|+++++||+|+...... .+ .
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9888888999999999999998 444444322 22 247899999999998521100 00 0
Q ss_pred ----------HHHHHHHh---------------CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 142 ----------EAKKFAEE---------------NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 142 ----------~~~~~~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
+....... ..++++++||+++.|++++++.+...+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 01111111 235689999999999999998886544
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=8e-17 Score=136.28 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
-|+++|..++|||||+++|.+. .+..+..+..+.+.....+...+ ...+.|||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999853 23334333444443333332222 2357899999999987766777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc--HHHHHHHHHhC---CCcEEEeccCCCCCHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR--YDEAKKFAEEN---DLIFVEASAMTGENVEQ 167 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~~S~~~~~~i~~ 167 (218)
|+|+++...-+.... +..+.. .++| +++|+||+|+.+..... .+++.++.... ..+++++||++|.|+++
T Consensus 81 VVda~eg~~~qT~eh-l~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMAQTREH-LAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcHHHHHH-HHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999988533222222 222222 2355 67999999996532221 23444555443 36799999999999999
Q ss_pred HHHHHHHHH
Q psy1169 168 AFLETAKKI 176 (218)
Q Consensus 168 ~~~~i~~~~ 176 (218)
+++.|.+..
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 998887654
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=4.4e-17 Score=123.13 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-------------CC---CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMP-------------DC---PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (218)
+|+++|..|+|||||+++|+...-.. .+ ....+.........+....+.+.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 48999999999999999998532110 00 011122222233333445678899999999998888
Q ss_pred hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
...+++.+|++|+|+|+.+.... ....++..+.. .++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 88999999999999999987543 33444444443 468999999999985
No 214
>KOG1423|consensus
Probab=99.75 E-value=7.4e-17 Score=121.49 Aligned_cols=163 Identities=20% Similarity=0.160 Sum_probs=110.2
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh------------h
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER------------F 77 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~ 77 (218)
....+.++|+|+|+|++|||||.|.+++....+......+.+.....+ +.....++.|+||||... +
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 345788999999999999999999999998887666655555444444 344667999999999321 1
Q ss_pred hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHH---------------
Q psy1169 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE--------------- 142 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~--------------- 142 (218)
.+.....+..+|.+++++|+++....-.- ..+..+..+ ..+|-++++||.|....+.+....
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 22345567889999999999974432111 122333332 368889999999975432221111
Q ss_pred -HHHHHHhC---------CCc----EEEeccCCCCCHHHHHHHHHHHH
Q psy1169 143 -AKKFAEEN---------DLI----FVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 143 -~~~~~~~~---------~~~----~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
..++.... +++ +|.+||++|+|++++-++|+..+
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 11111111 121 88999999999999999988766
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=4.6e-17 Score=121.58 Aligned_cols=113 Identities=23% Similarity=0.280 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------CCceeeeEE--EEEEEE---CCeEEEEEEeeCcch
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDC-----------------PHTIGVEFG--TRIIEV---HGEKIKLQIWDTAGQ 74 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~G~ 74 (218)
+|+|+|+.|+|||||+++|+........ ....+.+.. ...+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999865433210 001111211 112212 345688999999999
Q ss_pred hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
..+......++..+|++|+|+|+.+..+++. ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888888999999999999988766543 334443322 358999999999975
No 216
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.74 E-value=6.6e-17 Score=128.74 Aligned_cols=156 Identities=22% Similarity=0.194 Sum_probs=106.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh--------hH
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TR 82 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 82 (218)
-+..+|++++|.|+||||||+|.|++....-.. .+.++-+.-...+.+ ..+.+.++||+|..+-... ..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i--~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL--NGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE--CCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 355699999999999999999999987644322 223333333334444 4466778899996543332 33
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
..++.+|.+++|+|.+.+.+-++..- +. ....+.|+++|.||.|+........ . ....+.+++.+|++++
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~--~---~~~~~~~~i~iSa~t~ 361 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELES--E---KLANGDAIISISAKTG 361 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccch--h---hccCCCceEEEEecCc
Confidence 45789999999999999633222211 11 2335789999999999976543211 1 1123446899999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy1169 163 ENVEQAFLETAKKIYQN 179 (218)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (218)
.|++.+.+.|.+.+...
T Consensus 362 ~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 EGLDALREAIKQLFGKG 378 (454)
T ss_pred cCHHHHHHHHHHHHhhc
Confidence 99999988888777654
No 217
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=6.3e-17 Score=128.54 Aligned_cols=177 Identities=24% Similarity=0.197 Sum_probs=118.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----------hhh-hh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRA-VT 81 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~-~~ 81 (218)
..+||+|+|.|++|||||+|+|++.+..- ...+.++.+.-...++++++ .+.++||+|... |.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999866432 22223333333444455554 456789999543 111 12
Q ss_pred HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHH----h-CCCcEEE
Q psy1169 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE----E-NDLIFVE 156 (218)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~----~-~~~~~~~ 156 (218)
...+..+|++++|+|++.+-+-++..- ...+. ..+.++++++||+|+.+......++.+.... . ..++.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 345778999999999999877666532 22232 3578899999999987654343343332222 2 4567999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHh---hhcCccccccccccccc
Q psy1169 157 ASAMTGENVEQAFLETAKKIYQN---IKDGKLNANMTESGVQH 196 (218)
Q Consensus 157 ~S~~~~~~i~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~ 196 (218)
+||+++.++..+|+.+.+..... ++++.++..-..+...+
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~ 373 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKH 373 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhC
Confidence 99999999999998887655443 55555555555555544
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.73 E-value=2e-16 Score=128.16 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=95.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (218)
....++|+++|..++|||||+++|++..... ......+.+.......++.....+.|||+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4567999999999999999999998531100 00011222223333444445567889999999988
Q ss_pred hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhCC--
Q psy1169 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEND-- 151 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 151 (218)
.......+..+|++++|+|+.....-+... .+..+.. .++| +++++||+|+....+.. .+++..++...+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 776666678899999999998754333322 2222322 3577 67889999986433222 124445544433
Q ss_pred ---CcEEEeccCCC
Q psy1169 152 ---LIFVEASAMTG 162 (218)
Q Consensus 152 ---~~~~~~S~~~~ 162 (218)
++++++||+++
T Consensus 165 ~~~~~ii~vSa~~g 178 (394)
T PRK12736 165 GDDIPVIRGSALKA 178 (394)
T ss_pred cCCccEEEeecccc
Confidence 57999999998
No 219
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=126.04 Aligned_cols=148 Identities=22% Similarity=0.173 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh---------hhhhhHhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVTRSY 84 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 84 (218)
..|+++|.|+||||||+|||.+.... ..++.++ -+.......+.+ ..|.++||+|.+. ........
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvT-RDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVT-RDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCc-cCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 57999999999999999999986643 2333332 222222333333 3488999999653 12234456
Q ss_pred hccCCEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
+..||++|||+|....-+-++ +..|+ . ..+.|+++|+||+|-... .+.+.++....--..+.+||..|
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~L---r---~~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKIL---R---RSKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHH---H---hcCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEeehhhc
Confidence 789999999999998655333 23332 2 246999999999996422 13333343333334899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKKI 176 (218)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (218)
.|+.++++.+++.+
T Consensus 151 ~Gi~dLld~v~~~l 164 (444)
T COG1160 151 RGIGDLLDAVLELL 164 (444)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999988876
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.73 E-value=5.8e-17 Score=121.47 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCceeeeEEEEEEEECCeEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKF--M-----------------------------PDCPHTIGVEFGTRIIEVHGEKIK 65 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (218)
+|+++|..++|||||+.+|+...- . .+..+..+.+... ..+......
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~--~~~~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGL--AKFETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecce--EEEeeCCeE
Confidence 489999999999999999963210 0 0111112222222 223334568
Q ss_pred EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-------hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC--c
Q psy1169 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-------TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS--R 136 (218)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~ 136 (218)
+.+||+||+..+.......+..+|++|+|+|+++.. ..+....+ ..... . ...|+++++||+|+... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-L-GVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-c-CCCeEEEEEEcccccccccc
Confidence 889999999887776667788899999999999842 11222222 22221 1 23689999999999632 1
Q ss_pred cccH----HHHHHHHHhC-----CCcEEEeccCCCCCHH
Q psy1169 137 DVRY----DEAKKFAEEN-----DLIFVEASAMTGENVE 166 (218)
Q Consensus 137 ~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~i~ 166 (218)
.... +++..+.... +++++++||++|.|++
T Consensus 156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1111 2222233333 3679999999999987
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.73 E-value=3.7e-16 Score=126.68 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=95.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC-------C---C--C--CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-------F---M--P--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~-------~---~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (218)
....++|+++|..++|||||+++|++.. + . . ......+.+.......++....++.|+||||+..|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 3567999999999999999999998621 0 0 0 00011222222333334444567889999999988
Q ss_pred hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCCCCCcccc---HHHHHHHHHhC---
Q psy1169 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF-LIGNKMDLEGSRDVR---YDEAKKFAEEN--- 150 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~---~~~~~~~~~~~--- 150 (218)
.......+..+|++++|+|+.+....+.. ..+..+. ..++|.+ +++||+|+....+.. ..++..++...
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 77666778899999999999875433322 2232232 2457755 579999996432211 12455555543
Q ss_pred --CCcEEEeccCCCC
Q psy1169 151 --DLIFVEASAMTGE 163 (218)
Q Consensus 151 --~~~~~~~S~~~~~ 163 (218)
+++++++|++++.
T Consensus 165 ~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 165 GDDTPIIRGSALKAL 179 (396)
T ss_pred cCceeEEecchhccc
Confidence 3679999999985
No 222
>COG2262 HflX GTPases [General function prediction only]
Probab=99.72 E-value=5.4e-16 Score=121.55 Aligned_cols=164 Identities=21% Similarity=0.126 Sum_probs=118.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh---------hhhhhhHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRS 83 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 83 (218)
.....|.++|..++|||||+|+|.+........-..+.+...+.+.+.+ ...+.+.||.|.- .|.+.. .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-E 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-E 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-H
Confidence 4668999999999999999999997666555555556666677777764 3356677999932 244332 2
Q ss_pred hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE 163 (218)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (218)
....+|+++.|+|++++...+.+......+....-...|+++|.||.|+..+.. .........-..+.+||+++.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE 342 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence 356799999999999997777776666666665556799999999999765433 111111111147999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcC
Q psy1169 164 NVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~~~ 183 (218)
|++.+.+.|.+.+.......
T Consensus 343 gl~~L~~~i~~~l~~~~~~~ 362 (411)
T COG2262 343 GLDLLRERIIELLSGLRTEV 362 (411)
T ss_pred CHHHHHHHHHHHhhhcccce
Confidence 99999999998887654433
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=3.7e-16 Score=126.71 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=96.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF----------------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
....++|+++|..++|||||+++|++... ..+..+..+.+ ...+.++.....+.||||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 46679999999999999999999973200 01111222223 3334455556678899999999
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCCCCCcccc---HHHHHHHHHhCC
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF-LIGNKMDLEGSRDVR---YDEAKKFAEEND 151 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 151 (218)
.|..........+|++++|+|+......+.... +..+.. .++|.+ +++||+|+.+..+.. .+++++++...+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~-l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTREH-ILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 887655666678899999999988543333322 222322 356654 689999986543222 134556665543
Q ss_pred -----CcEEEeccCCCC
Q psy1169 152 -----LIFVEASAMTGE 163 (218)
Q Consensus 152 -----~~~~~~S~~~~~ 163 (218)
++++++|++++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999874
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=4.4e-16 Score=116.66 Aligned_cols=153 Identities=19% Similarity=0.217 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------c-------eeeeEEEEE-------------EEEC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----------------T-------IGVEFGTRI-------------IEVH 60 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~----------------~-------~~~~~~~~~-------------~~~~ 60 (218)
||+++|+.++|||||+.+|..+.+...... + .+++..... -.++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987655432111 0 011100000 0011
Q ss_pred CeEEEEEEeeCcchhhhhhhhHhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 61 GEKIKLQIWDTAGQERFRAVTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
.....+.++|+||++.|.......+. .+|++++|+|+.....-+. ..++..+.. .++|+++++||+|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 22357789999999988665444443 6899999999987654332 233333332 46889999999998543222
Q ss_pred c--HHHHHHHHH--------------------------hCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 139 R--YDEAKKFAE--------------------------ENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 139 ~--~~~~~~~~~--------------------------~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
. ..++.++.. ...++++.+|+.+|.|+++++..|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 122222222 1134799999999999998886653
No 225
>KOG1707|consensus
Probab=99.72 E-value=3.5e-17 Score=132.50 Aligned_cols=166 Identities=25% Similarity=0.345 Sum_probs=121.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+++|+.|+||||||-.++..+|.+..++....- ..-..+.-..+...|+|++....-+......++++|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 4567999999999999999999999999887655432211 11112222344578999986655555567788999999
Q ss_pred EEEEECCChhhHHHHHH-HHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHH-HHHHHHhC-CC-cEEEeccCCCCCH
Q psy1169 92 LMVYDITRRSTYNHLSS-WLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDE-AKKFAEEN-DL-IFVEASAMTGENV 165 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~~~-~~-~~~~~S~~~~~~i 165 (218)
.++|+++++++++.+.. |+..+.+..+ .++|||+|+||.|.........+. +..+..+. .+ ..++|||++-.++
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV 163 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence 99999999999999854 7777776654 489999999999987655443232 22222221 12 1689999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1169 166 EQAFLETAKKIYQN 179 (218)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (218)
.++|....+.++..
T Consensus 164 ~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 164 SELFYYAQKAVIHP 177 (625)
T ss_pred Hhhhhhhhheeecc
Confidence 99998888877664
No 226
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.72 E-value=1.5e-16 Score=118.64 Aligned_cols=164 Identities=18% Similarity=0.288 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhh-----hhHhhhccCCE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRA-----VTRSYYRGAAG 90 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 90 (218)
||+++|+.|+||||+.+.+.++..+.+.. ..+.+.......+ ....+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999888776654333221 1222222222222 23556899999999875433 45677899999
Q ss_pred EEEEEECCChhhHHHHHH---HHHHHhhhcCCCCeEEEEeeCCCCCCCc--cccH----HHHHHHHHhCC---CcEEEec
Q psy1169 91 ALMVYDITRRSTYNHLSS---WLTDTKNLTNPNTVIFLIGNKMDLEGSR--DVRY----DEAKKFAEEND---LIFVEAS 158 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~----~~~~~~~~~~~---~~~~~~S 158 (218)
+|||||+...+..+.+.. .+..+... .+++.+.++++|+|+.... .... +.+.+.+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999996554444444 44444443 3789999999999986432 1111 22333344444 7799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169 159 AMTGENVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (218)
..+ +.+-++|..+++.+..+.+.-
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHH
Confidence 998 479999999988887665443
No 227
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=7e-16 Score=125.58 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=99.0
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF----------------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
......++|+++|.+++|||||+++|+...- ..+..+..+.+ .....++....++.|+|+||
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITIN--TAHVEYETENRHYAHVDCPG 84 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEE--ccEEEEccCCeEEEEEECCC
Confidence 3456779999999999999999999986311 01111222222 22333444455778999999
Q ss_pred hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHh
Q psy1169 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEE 149 (218)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~ 149 (218)
+..|.......+..+|++++|+|+.....-+... .+..+.. .++| +++++||+|+....+.. ..++..+...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 9888776777788999999999998764333222 2222322 3577 77899999997543221 1234445444
Q ss_pred C-----CCcEEEeccCCCCCH
Q psy1169 150 N-----DLIFVEASAMTGENV 165 (218)
Q Consensus 150 ~-----~~~~~~~S~~~~~~i 165 (218)
. .++++++|++++.++
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred hCCCCCcceEEEcchhhcccc
Confidence 3 367999999988643
No 228
>KOG1489|consensus
Probab=99.70 E-value=5.6e-16 Score=117.35 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=110.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-------hhHhhhcc
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-------VTRSYYRG 87 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~ 87 (218)
...+.++|.|++|||||++.|...+......+.++.......+.+++.. ++.+-|+||..+-.. ..-..++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 3457899999999999999998655443333444444444444444333 488899999543221 22334678
Q ss_pred CCEEEEEEECCCh---hhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCC
Q psy1169 88 AAGALMVYDITRR---STYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMT 161 (218)
Q Consensus 88 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~ 161 (218)
+++++||+|++.. +.|+.+..++.++..+.+ ...|.++|+||+|+.+... .....+.....-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999998 888888887777776654 4789999999999853221 2234555554434 89999999
Q ss_pred CCCHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAK 174 (218)
Q Consensus 162 ~~~i~~~~~~i~~ 174 (218)
++++.++++.+-+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9999998877654
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.70 E-value=1.1e-15 Score=112.70 Aligned_cols=158 Identities=11% Similarity=0.140 Sum_probs=92.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceee-eEEEEEEEEC-CeEEEEEEeeCcchhhhhh-----hhHhhhcc
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGV-EFGTRIIEVH-GEKIKLQIWDTAGQERFRA-----VTRSYYRG 87 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~-----~~~~~~~~ 87 (218)
.+||+++|.+|+|||||+|.|.+...........+. ........+. .....+.+||+||...... +....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999986543322222111 1101111111 1123688999999653222 12223567
Q ss_pred CCEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc-----------ccHHHHHHHHH----h--
Q psy1169 88 AAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD-----------VRYDEAKKFAE----E-- 149 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~-- 149 (218)
+|+++++.+.. +... ..|++.+.. .+.|+++|+||+|+....+ ...+..++.+. .
T Consensus 81 ~d~~l~v~~~~----~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISSTR----FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCCC----CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 89888874422 2222 234444444 2578999999999843211 11122222222 1
Q ss_pred -CCCcEEEeccC--CCCCHHHHHHHHHHHHHHh
Q psy1169 150 -NDLIFVEASAM--TGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 150 -~~~~~~~~S~~--~~~~i~~~~~~i~~~~~~~ 179 (218)
...++|.+|+. .+.++..+.+.+++.+-++
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 12358999998 5688998888888877553
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.70 E-value=6.9e-16 Score=127.93 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=116.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh------hhhhHhhh--c
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF------RAVTRSYY--R 86 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~ 86 (218)
..+|+++|+|++|||||+|+|.+........+..+++.....+...+.. ++++|.||.... +...+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3569999999999999999999887776667777777666666665544 778899995432 22344444 4
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
+.|++|-|+|+++-+---.+ ..++.+ -+.|+++++|+.|....+.+. -+.+++.+..++|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl---tlQLlE---~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL---TLQLLE---LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHH---HHHHHH---cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 67999999999987542221 112222 478899999999987665544 56778888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 167 QAFLETAKKIYQ 178 (218)
Q Consensus 167 ~~~~~i~~~~~~ 178 (218)
++...+++...+
T Consensus 154 ~l~~~i~~~~~~ 165 (653)
T COG0370 154 ELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHhccc
Confidence 999888765433
No 231
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=1.6e-15 Score=117.10 Aligned_cols=142 Identities=18% Similarity=0.236 Sum_probs=93.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-----
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----- 78 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----- 78 (218)
..++|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+.+.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998776543 23444555555556667778899999999943210
Q ss_pred -------------h--------hhHhhhc--cCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 79 -------------A--------VTRSYYR--GAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 79 -------------~--------~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
. .....+. .+|+++|+++.+... ...+ ...++.+. ..+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HHHHHHHh----ccCCEEEEEECCCcCC
Confidence 0 0001222 467888888876521 1111 22333332 2689999999999865
Q ss_pred Ccc--ccHHHHHHHHHhCCCcEEEeccC
Q psy1169 135 SRD--VRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
..+ .....+.+.+..++++++.....
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 322 33455777778889998876654
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=2.1e-15 Score=115.87 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC---------C-----------ceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP---------H-----------TIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
-+|+|+|.+|+|||||+++|+...-..... . ..+.........++...+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999998531110000 0 01222333334455566889999999999
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
+|.......++.+|++|+|+|+++....+ ...++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 88877777889999999999998764322 2333333322 47899999999998554
No 233
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.68 E-value=9.2e-16 Score=114.49 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--CCC--------------CCCceeeeEEEEEEEEC--------CeEEEEEEeeCc
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKF--MPD--------------CPHTIGVEFGTRIIEVH--------GEKIKLQIWDTA 72 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 72 (218)
+|+++|..++|||||+.+|+...- ... .....+.......+.++ +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999985321 100 01111111111122222 347889999999
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
|+..|......+++.+|++|+|+|+.+....+....+ .... ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence 9999999899999999999999999988766543322 2222 2468999999999975
No 234
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=1.2e-15 Score=123.94 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC--C-------------------------------CCCCceeeeEEEEEEEECCe
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFM--P-------------------------------DCPHTIGVEFGTRIIEVHGE 62 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~~~ 62 (218)
++|+++|..++|||||+.+|+...-. . +.....+.+... ..+...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~--~~~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAY--RYFSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeee--EEEccC
Confidence 58999999999999999999743211 0 001111222222 223334
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY-- 140 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-- 140 (218)
...+.||||||++.|.......+..+|++|+|+|+.....-+..+.|. .+.... ..++++++||+|+........
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~--~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLG--IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence 457889999999988766666788999999999998764433333222 122211 235889999999864332111
Q ss_pred --HHHHHHHHhC---CCcEEEeccCCCCCHHH
Q psy1169 141 --DEAKKFAEEN---DLIFVEASAMTGENVEQ 167 (218)
Q Consensus 141 --~~~~~~~~~~---~~~~~~~S~~~~~~i~~ 167 (218)
++...+.... +++++++||++|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222333332 35699999999999885
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=99.68 E-value=2.2e-15 Score=123.99 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=97.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC------C----------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------F----------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
....++|+++|..++|||||+++|+... . ..+.....+.+. ....++.....+.+||+||++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~--~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEE--EEEEEecCCcEEEEEECCCHH
Confidence 4667999999999999999999998521 1 112222223332 222233344577899999999
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhC-
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEN- 150 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~- 150 (218)
.|.......+..+|++++|+|+.+...-+..+ ++..+.. .++| +++++||+|+....... .+++..+....
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 98877777788999999999999865443333 3333332 3577 77899999996532221 12344444442
Q ss_pred ----CCcEEEeccCCCCC
Q psy1169 151 ----DLIFVEASAMTGEN 164 (218)
Q Consensus 151 ----~~~~~~~S~~~~~~ 164 (218)
+++++++|+.++.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 57799999998854
No 236
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.4e-15 Score=121.50 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=114.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..=|+++|....|||||+..+-...........++-+.....+..+. ..-.+.|+|||||+.|..+...-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999987776655545444444444554431 2346788999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC---------CCcEEEeccCCCC
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN---------DLIFVEASAMTGE 163 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~~ 163 (218)
+|+++++.--.|..+. +......++|+++++||+|..+... +....-.+++ ...++++||++|.
T Consensus 84 LVVa~dDGv~pQTiEA----I~hak~a~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQTIEA----INHAKAAGVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchhHHHH----HHHHHHCCCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999999754444332 3334446899999999999874432 2222222222 2458999999999
Q ss_pred CHHHHHHHHHHHH
Q psy1169 164 NVEQAFLETAKKI 176 (218)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (218)
|+++++..++-..
T Consensus 157 Gi~eLL~~ill~a 169 (509)
T COG0532 157 GIDELLELILLLA 169 (509)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998877554
No 237
>KOG0462|consensus
Probab=99.68 E-value=9.8e-16 Score=123.40 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=122.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCC--CC-------------CCCCceeeeEE-EEEEEECCeEEEEEEeeCcch
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKF--MP-------------DCPHTIGVEFG-TRIIEVHGEKIKLQIWDTAGQ 74 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~--~~-------------~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~ 74 (218)
|.++.-++.|+..-..|||||..+|+...- .. +..+.+++... ...+..++..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 447778999999999999999999985321 11 11222222222 223333477899999999999
Q ss_pred hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHHhCCCc
Q psy1169 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAEENDLI 153 (218)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 153 (218)
.+|.....+.+..++++|+|+|++....-|.+-+++..+. .+..+|.|+||+|++..+.- ...+.+++......+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 9999988899999999999999999887777777665554 47889999999999765432 223455555566667
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q psy1169 154 FVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 154 ~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
.+.+||++|.|++++|++|++.+
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhC
Confidence 99999999999999998888876
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=1.3e-15 Score=125.65 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=96.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------------------------------CCCceeeeEEEEEEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---------------------------------CPHTIGVEFGTRIIE 58 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 58 (218)
....++|+++|..++|||||+.+|+...-... .....+.+. ....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~--~~~~ 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV--AYRY 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe--eEEE
Confidence 46679999999999999999999975321100 001122222 2222
Q ss_pred ECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 59 VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
+.....++.||||||++.|.......+..+|++|+|+|+.....-+....+. .+.... ..|+++++||+|+......
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg--~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLLG--IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHhC--CCceEEEEEeeccccchhH
Confidence 3344567889999999988765555679999999999998754322222221 122111 2468899999998643321
Q ss_pred cHHH----HHHHHHhC----CCcEEEeccCCCCCHHHH
Q psy1169 139 RYDE----AKKFAEEN----DLIFVEASAMTGENVEQA 168 (218)
Q Consensus 139 ~~~~----~~~~~~~~----~~~~~~~S~~~~~~i~~~ 168 (218)
...+ ...+.... ..+++++||+++.|+++.
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1222 22223322 467999999999999864
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=2.3e-15 Score=115.76 Aligned_cols=138 Identities=16% Similarity=0.116 Sum_probs=87.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--C----------------CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKF--M----------------PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (218)
+|+++|.+|+|||||+++|+...- . .+..+..+.+.....+.+ ...++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 489999999999999999974211 0 111222233322333333 45678899999999888
Q ss_pred hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc-ccHHHHHHHHHhCCCc-EEE
Q psy1169 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD-VRYDEAKKFAEENDLI-FVE 156 (218)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~ 156 (218)
..+..+++.+|++|+|+|+.+...-+.. ..+..+.. .++|+++++||+|+.+... ...++++.......++ .++
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence 8888999999999999999886433222 23333332 4689999999999864321 1123333333322222 556
Q ss_pred eccC
Q psy1169 157 ASAM 160 (218)
Q Consensus 157 ~S~~ 160 (218)
+|+.
T Consensus 155 isa~ 158 (270)
T cd01886 155 IGEE 158 (270)
T ss_pred cccC
Confidence 6665
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.66 E-value=5.2e-15 Score=123.29 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=81.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC--C----------------CCCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP--D----------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (218)
...-+|+|+|..++|||||+++|+... ... . .....+.........++...+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 566799999999999999999997411 100 0 00011222333333344456788999999
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
|+..|......+++.+|++|+|+|+.+....+ ...++..... .++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCccc
Confidence 99998887788899999999999998864322 2334433332 579999999999974
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=1.2e-15 Score=117.85 Aligned_cols=113 Identities=22% Similarity=0.261 Sum_probs=77.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCC------------------CceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCP------------------HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (218)
+|+++|.+|+|||||+++|+...-..... ...+.......+.+ ..+.+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence 48999999999999999997532111000 01111211222222 44678899999998888
Q ss_pred hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
.....++..+|++++|+|+++....+....| ..+. ..+.|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCC
Confidence 7788899999999999999987655433333 2232 246899999999998654
No 242
>PRK00049 elongation factor Tu; Reviewed
Probab=99.65 E-value=1.4e-14 Score=117.45 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=95.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF----------------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
....++|+++|..++|||||+++|+.... ..+..+..+.+ .....+.....++.++||||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHH
Confidence 35679999999999999999999986311 01112222222 3333444455678899999998
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCCCCCcccc---HHHHHHHHHhC-
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF-LIGNKMDLEGSRDVR---YDEAKKFAEEN- 150 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~---~~~~~~~~~~~- 150 (218)
.|.......+..+|++++|+|+.....-+.. ..+..+.. .++|.+ +++||+|+....... ..++..+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 8877666778899999999999875433322 23333332 357865 589999996432211 12344444432
Q ss_pred ----CCcEEEeccCCCC
Q psy1169 151 ----DLIFVEASAMTGE 163 (218)
Q Consensus 151 ----~~~~~~~S~~~~~ 163 (218)
+++++++||+++.
T Consensus 163 ~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 163 FPGDDTPIIRGSALKAL 179 (396)
T ss_pred CCccCCcEEEeeccccc
Confidence 4689999999875
No 243
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.65 E-value=1.1e-14 Score=119.41 Aligned_cols=149 Identities=16% Similarity=0.187 Sum_probs=99.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCceeeeEEEEEEEECC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF-------------------------------MPDCPHTIGVEFGTRIIEVHG 61 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (218)
...++|+++|..++|||||+.+|+...- ..+.....+.+ .....+..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~--~~~~~~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID--IALWKFET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEE--EEEEEecC
Confidence 5568999999999999999999974210 00111122222 23333445
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHH-------HHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN-------HLSSWLTDTKNLTNPNTV-IFLIGNKMDLE 133 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~ 133 (218)
....+.++|+||+++|.......+..+|++|+|+|+.+. .|+ .....+..+. ..++| +++++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCC
Confidence 567888999999999998888889999999999999873 221 2222222222 24564 78889999985
Q ss_pred CC--ccc----cHHHHHHHHHhCC-----CcEEEeccCCCCCHHH
Q psy1169 134 GS--RDV----RYDEAKKFAEEND-----LIFVEASAMTGENVEQ 167 (218)
Q Consensus 134 ~~--~~~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 167 (218)
.. ... ..+++..++...+ ++++++||++|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 111 1244666666544 6799999999999854
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=6.5e-15 Score=127.32 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=84.0
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------CCCCC---ceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-------------PDCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (218)
+.+...+|+|+|..|+|||||+++|+...-. ..+.+ ..+.+.......+....+.+.+|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 4466789999999999999999999853210 00000 0111111111222234578899999999
Q ss_pred hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99988889999999999999999998776655444 22322 4689999999999853
No 245
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.4e-14 Score=109.34 Aligned_cols=161 Identities=20% Similarity=0.181 Sum_probs=108.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh-----hhhhh---hHhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-----RFRAV---TRSY 84 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~---~~~~ 84 (218)
+...-|+|.|.|+||||||++.+..-.......|.++......++.. +...++++||||.- +...+ ....
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 46678999999999999999999887766555555555555555544 34567788999931 11111 1122
Q ss_pred hc-cCCEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccC
Q psy1169 85 YR-GAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAM 160 (218)
Q Consensus 85 ~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~ 160 (218)
++ -.++++|+||.+.. -+.+.-..+++.+....+ .|+++|.||.|+.+.... +++...... .+.....+++.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence 33 45678999999874 556666677777877664 899999999998654433 333333333 34436778888
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy1169 161 TGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~ 179 (218)
.+.+++.+-..+...+.+.
T Consensus 320 ~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 320 KGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ehhhHHHHHHHHHHHhhch
Confidence 8888887777777665543
No 246
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.63 E-value=1.3e-14 Score=119.07 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=97.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC--CCC-----------------------------CCCCCceeeeEEEEEEEECC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFM-----------------------------PDCPHTIGVEFGTRIIEVHG 61 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (218)
...++|+++|..++|||||+.+|+.. ... ++.....+.+ .....++.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid--~~~~~~~~ 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITID--IALWKFET 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEE--eeeEEEcc
Confidence 56689999999999999999999751 111 0111222333 23333445
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh-------HHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST-------YNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE 133 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~ 133 (218)
....+.|+|+||+.+|.......+..+|++|+|+|+..... -+..+.| ..+.. .++| +++++||+|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHH---cCCCeEEEEEEccccc
Confidence 56788899999999998877778899999999999987531 1222222 22222 3566 67899999953
Q ss_pred C--CccccH----HHHHHHHHhC-----CCcEEEeccCCCCCHHH
Q psy1169 134 G--SRDVRY----DEAKKFAEEN-----DLIFVEASAMTGENVEQ 167 (218)
Q Consensus 134 ~--~~~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 167 (218)
. ..+..+ +++..+.... +++++++|+.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 111112 2333333332 46799999999999864
No 247
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.63 E-value=3.1e-14 Score=118.72 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=82.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhC--CCCC------C------------CCCceeeeEEEEEEEECCeEEEEEEeeC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMP------D------------CPHTIGVEFGTRIIEVHGEKIKLQIWDT 71 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~--~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (218)
..+..+|+|+|.+++|||||+++|+.. .... . .....+.........++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 356789999999999999999998632 1100 0 0011233333444445556788999999
Q ss_pred cchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
||+..|.......+..+|++|+|+|+.+.... ....+++.... .+.|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 99998887777788999999999999875221 22334443332 468999999999973
No 248
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.63 E-value=1.2e-15 Score=109.16 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhh-hHh--hhccCCEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAV-TRS--YYRGAAGA 91 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~-~~~--~~~~~d~~ 91 (218)
-.|+++|+.|+|||+|+.+|..+.......+. ... ..+.+ ....-.+.++|+||+.+.+.. ... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999988654433222 111 11112 223346778999999987653 333 47889999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHhhh---cCCCCeEEEEeeCCCCCCCc
Q psy1169 92 LMVYDITR-RSTYNHLSSWLTDTKNL---TNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 92 i~v~d~~~-~~s~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~ 136 (218)
|||+|.+. .....++.+++..+... ....+|++|+.||.|+...+
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99999985 33444444443333322 24689999999999996654
No 249
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.3e-14 Score=111.26 Aligned_cols=164 Identities=15% Similarity=0.075 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----h---hHhhhccC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----V---TRSYYRGA 88 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~ 88 (218)
.-|.++|.|++|||||++.+..-+......+.++.......+.+ ...-.|.+-|+||.-+-.+ + .-..+.++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 45779999999999999999875544444444455444555554 3334678889999543211 1 22345678
Q ss_pred CEEEEEEECCChhh---HHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEE-EeccCCC
Q psy1169 89 AGALMVYDITRRST---YNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFV-EASAMTG 162 (218)
Q Consensus 89 d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~S~~~~ 162 (218)
-++++|+|++..+. .++......++..+.. .+.|.+||+||+|+....+......+.+........+ .+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 99999999987653 4555455555554432 4788999999999766655544445555555444422 2999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy1169 163 ENVEQAFLETAKKIYQNI 180 (218)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~ 180 (218)
.|++++...+.+.+.+..
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999998888877664
No 250
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=2e-14 Score=97.05 Aligned_cols=106 Identities=22% Similarity=0.165 Sum_probs=67.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh---------hhhhhHhhhc
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVTRSYYR 86 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~ 86 (218)
||+|+|.+|+|||||+|+|++..... ...+..+.......+.+++..+ .++||||... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 69999999999999999999754321 1112222222234444555554 5999999532 1112233348
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeC
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK 129 (218)
.+|++++|+|..++.. +....+++.+ . .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence 9999999999887422 2233343444 2 67999999998
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=1.8e-14 Score=123.46 Aligned_cols=152 Identities=22% Similarity=0.235 Sum_probs=94.7
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC------------CC---------------------CceeeeEEEEEE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD------------CP---------------------HTIGVEFGTRII 57 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~------------~~---------------------~~~~~~~~~~~~ 57 (218)
..+..++|+++|.+++|||||+++|+...-.-. .. ...+.+.. ..
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~--~~ 97 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVA--YR 97 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceee--ee
Confidence 345568999999999999999999985321100 00 01111211 12
Q ss_pred EECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 58 EVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 58 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
.+.....++.|+||||++.|.......+..+|++|+|+|+.....-+....+. .+... ...++++++||+|+.....
T Consensus 98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL--GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh--CCCeEEEEEEecccccchh
Confidence 22334457789999999987665556688999999999998754332222221 12221 1256889999999864221
Q ss_pred ccHH----HHHHHHHhCC---CcEEEeccCCCCCHHH
Q psy1169 138 VRYD----EAKKFAEEND---LIFVEASAMTGENVEQ 167 (218)
Q Consensus 138 ~~~~----~~~~~~~~~~---~~~~~~S~~~~~~i~~ 167 (218)
...+ +...+....+ .+++++||++|.|+.+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1112 2333333433 4689999999999874
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=2.3e-14 Score=117.45 Aligned_cols=143 Identities=14% Similarity=0.123 Sum_probs=90.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhC------CC----------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ------KF----------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
....++|+++|..++|||||+++|.+. .. ..+..+..+.+ .....++....++.|+||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCcc
Confidence 456799999999999999999999632 10 01111223333 3333444455678899999998
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccccH---HHHHHHHHhC-
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY---DEAKKFAEEN- 150 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~---~~~~~~~~~~- 150 (218)
.|.......+..+|++++|+|+.+...-+.. ..+..+.. .++| +++++||+|+........ .+..++....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt~-e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8766555566779999999999876433332 22222222 4578 578899999975332111 1223333321
Q ss_pred ----CCcEEEeccC
Q psy1169 151 ----DLIFVEASAM 160 (218)
Q Consensus 151 ----~~~~~~~S~~ 160 (218)
.++++++|+.
T Consensus 212 ~~~~~vpiip~Sa~ 225 (447)
T PLN03127 212 FPGDEIPIIRGSAL 225 (447)
T ss_pred CCCCcceEEEeccc
Confidence 4678888876
No 253
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=2.6e-14 Score=111.96 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=54.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEE---------------------ECC-eEEEEEEeeCcch-
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIE---------------------VHG-EKIKLQIWDTAGQ- 74 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~- 74 (218)
|+++|.+++|||||+++|.+........+..+.+....... .++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765322222222222221111 122 3467999999997
Q ss_pred ---hhhhhhhHh---hhccCCEEEEEEECCC
Q psy1169 75 ---ERFRAVTRS---YYRGAAGALMVYDITR 99 (218)
Q Consensus 75 ---~~~~~~~~~---~~~~~d~~i~v~d~~~ 99 (218)
..+..+... .++.+|++++|+|+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 334444344 4899999999999973
No 254
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=1.9e-14 Score=114.49 Aligned_cols=160 Identities=24% Similarity=0.243 Sum_probs=117.9
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCC--C-------------CCCCC--ceeeeEEEEEEEE-CCeEEEEEEeeC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF--M-------------PDCPH--TIGVEFGTRIIEV-HGEKIKLQIWDT 71 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~--~-------------~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~ 71 (218)
.+..+.-+..++..-..|||||..||+...- . -+..+ |+..+.....+.. ++..+.++++||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 3456677889999999999999999975321 1 01222 2333322233333 458899999999
Q ss_pred cchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH-HHHhC
Q psy1169 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK-FAEEN 150 (218)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~ 150 (218)
|||..|.....+.+..|.+.|+++|+++.-.-|.+.+.+..+. .+.-++-|+||.||+.... +.+.+ ...-.
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp---ervk~eIe~~i 156 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP---ERVKQEIEDII 156 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH---HHHHHHHHHHh
Confidence 9999998888888899999999999999988888888776665 4677899999999976532 22222 22224
Q ss_pred CCc---EEEeccCCCCCHHHHHHHHHHHH
Q psy1169 151 DLI---FVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 151 ~~~---~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
++. .+.+||++|.|++++++.|++.+
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhC
Confidence 443 78899999999999999998877
No 255
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.60 E-value=5.7e-14 Score=103.58 Aligned_cols=159 Identities=12% Similarity=0.129 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------h-h---hH
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP--HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------A-V---TR 82 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~---~~ 82 (218)
++|+++|.+|+|||||+|.|++........ +..+.........+. ...+.++||||..... . + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876543321 111222222222233 3468899999954321 1 1 12
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCCcccc------HHHHHHHHHhCCCcE
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGSRDVR------YDEAKKFAEENDLIF 154 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~ 154 (218)
....++|++|+|+++.. .+-++ ...++.+....+. -.++++++|+.|......+. ....+.+.+..+-.|
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999887 22222 2223333333222 24678889998865432111 123444455544445
Q ss_pred EEec-----cCCCCCHHHHHHHHHHHHHH
Q psy1169 155 VEAS-----AMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 155 ~~~S-----~~~~~~i~~~~~~i~~~~~~ 178 (218)
+..+ +..+.+++++++.+.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 4444 44567788888777777765
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.60 E-value=2.6e-14 Score=117.01 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=103.0
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEEE---------------EECC-----------
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKF---MPDCPHTIGVEFGTRII---------------EVHG----------- 61 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 61 (218)
..+..++|.++|.-..|||||+..|.+... .++.....+.+...... ..+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346779999999999999999999985322 11211111111100000 0000
Q ss_pred -----eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 62 -----EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 62 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
-...+.|+|+||++.|.......+..+|++++|+|+.+. ...+..+.+ ..+.. . .-.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~-l-gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEI-M-KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHH-c-CCCcEEEEEecccccCH
Confidence 023678999999999877767777899999999999974 222222222 22222 1 12468999999999643
Q ss_pred ccc--cHHHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 136 RDV--RYDEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 136 ~~~--~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
... ..++++.+... .+.+++++||++|.|++++++.|.+.+
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 221 12334444332 467899999999999998888777543
No 257
>KOG1145|consensus
Probab=99.60 E-value=7.1e-14 Score=112.89 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=113.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
++..=|.|+|...-|||||+..|-+..........++-....-.+..+.+ -.++|.||||+..|..+..+-..-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 45667899999999999999999877665544333333333334444433 56778899999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH-HHHHHh--------CCCcEEEeccCCCC
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA-KKFAEE--------NDLIFVEASAMTGE 163 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~~~~~~--------~~~~~~~~S~~~~~ 163 (218)
+|+.+.|.--.|.++ .|......++|+++.+||+|.++.. .+.+ +++... .+..++++||++|.
T Consensus 230 LVVAadDGVmpQT~E----aIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLE----AIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCccHhHHH----HHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 999999975444332 2444445789999999999976443 2333 333321 24568999999999
Q ss_pred CHHHHHHHHHHHH
Q psy1169 164 NVEQAFLETAKKI 176 (218)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (218)
|++.+.+.++-.+
T Consensus 303 nl~~L~eaill~A 315 (683)
T KOG1145|consen 303 NLDLLEEAILLLA 315 (683)
T ss_pred ChHHHHHHHHHHH
Confidence 9998888776544
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.57 E-value=1.6e-13 Score=118.54 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=82.7
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCC--C----------------CCCCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P----------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (218)
+.+...+|+|+|..++|||||+++|+...-. . +..+..+.+.....+.+ ...++.++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCC
Confidence 3456789999999999999999999752110 0 01222333333333333 45678899999
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
|+..+...+...+..+|++|+|+|+.+....+... .+..+.. .+.|+++++||+|+..
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 99888888888999999999999998875444332 2322322 4688999999999863
No 259
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.57 E-value=3.1e-14 Score=93.49 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=92.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----hhhhhhHhhhccCCEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (218)
|++++|..|+|||||.+.+.+... .+..|..++ +.... .+||||.- .+.+........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999976543 222232222 22111 46999943 22222334467889999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~ 171 (218)
+|-.++++++. +-..+... -..|+|-+++|.||.++. +.+..+.|..+-+. ++|++|+.++.|++++++.
T Consensus 70 ~v~~and~~s~-----f~p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESR-----FPPGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCcccc-----CCcccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999998762 11111221 135589999999997643 44677777777554 5999999999999999988
Q ss_pred HHH
Q psy1169 172 TAK 174 (218)
Q Consensus 172 i~~ 174 (218)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 764
No 260
>KOG0077|consensus
Probab=99.57 E-value=1.8e-14 Score=99.15 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=109.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...-|++++|--++|||||++.|.+..... +.||.-.+... .. -.++.++-+|.+|+..-+..|..|+..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPTSE~--l~--Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEE--LS--IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCChHH--he--ecCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 345689999999999999999997665433 23333222112 12 25678889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH---HhC-----------C---CcE
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA---EEN-----------D---LIF 154 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---~~~-----------~---~~~ 154 (218)
+.+|+-+.+-|++.+.-++.+.... -..+|+++.+||+|.+... ..++.+... +.. + +.+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 9999999999988877666554433 2579999999999987653 323322211 110 1 125
Q ss_pred EEeccCCCCCHHHHHHHHHH
Q psy1169 155 VEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 155 ~~~S~~~~~~i~~~~~~i~~ 174 (218)
+.+|...+.+--+.|.|+.+
T Consensus 171 fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEccCccceeeeehhh
Confidence 66887777776666666544
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=9.1e-14 Score=120.11 Aligned_cols=119 Identities=16% Similarity=0.091 Sum_probs=83.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-----C-------------CCCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-----D-------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (218)
+.+..-+|+|+|..++|||||+++|+...-.. . ..+.++.+.....+.+ ....+.+||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTP 83 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTP 83 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECC
Confidence 44567799999999999999999997422110 0 0112222322333333 45688999999
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
|+..+......++..+|++|+|+|+.+....+... ++..+.. .++|+++++||+|+...
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCC
Confidence 99888777888999999999999999876555433 2333322 46899999999998753
No 262
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.53 E-value=6.7e-13 Score=107.08 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE---------------------C-CeEEEEEEeeCcc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV---------------------H-GEKIKLQIWDTAG 73 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 73 (218)
++|+++|.+++|||||+++|.+........+..+.+.....+.+ + .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987654322232222222222211 1 1236789999999
Q ss_pred hh----hhhhhhHhh---hccCCEEEEEEECC
Q psy1169 74 QE----RFRAVTRSY---YRGAAGALMVYDIT 98 (218)
Q Consensus 74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 98 (218)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 222344444 88999999999997
No 263
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.53 E-value=6.5e-13 Score=101.31 Aligned_cols=156 Identities=23% Similarity=0.188 Sum_probs=106.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------hhhHhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSY 84 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~ 84 (218)
+.-..+++++|+|++|||||++.|.+........+.++.+....++.+++ .++++.|+||.-.-. ...-..
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeee
Confidence 34567899999999999999999987665544445555555555555554 567788999954321 123456
Q ss_pred hccCCEEEEEEECCChhh-HHHHHHHHHHHhh------------------------------------------------
Q psy1169 85 YRGAAGALMVYDITRRST-YNHLSSWLTDTKN------------------------------------------------ 115 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~------------------------------------------------ 115 (218)
.++||++|+|+|+....+ .+.+...+.....
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 789999999999987655 4443333222111
Q ss_pred ---------------h--cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 116 ---------------L--TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 116 ---------------~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
. .-.-+|.++|.||.|+.. .++...+.+.. .++.+||..+.|++++.+.|.+.+
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 0 001367799999999854 24444454444 689999999999999998888766
No 264
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=1.5e-12 Score=108.26 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=71.9
Q ss_pred EEEEEeeCcchhh-----hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 64 IKLQIWDTAGQER-----FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 64 ~~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
.++.|+||||... ........+..+|+++||+|.....+..+. ...+.+.... .+.|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 4678999999643 222344578999999999999875443332 2333333322 23699999999998543332
Q ss_pred cHHHHHHHHH----hCC---CcEEEeccCCCCCHHHHHHHHHH
Q psy1169 139 RYDEAKKFAE----END---LIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 139 ~~~~~~~~~~----~~~---~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
..+.+..+.. ... ..+|++||+.|.|++++++.|.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2344444432 212 24999999999999999888775
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=2e-13 Score=102.08 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=105.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE-EECCeEEEEEEeeCcchhh-------hhhhhHh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII-EVHGEKIKLQIWDTAGQER-------FRAVTRS 83 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 83 (218)
....++|+++|..|+|||||||+|..+...+...-..+.+...... .+++ -.+.|||+||.++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 4567899999999999999999998655544322222222222221 1222 5788999999654 6777888
Q ss_pred hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc-c------ccHH-----------HHHH
Q psy1169 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR-D------VRYD-----------EAKK 145 (218)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~------~~~~-----------~~~~ 145 (218)
++.+.|.+++++++.++.---+. ++++.+.... .+.++++++|.+|....- + .... ...+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999987432222 2333333322 347899999999975431 1 1111 1222
Q ss_pred HHHhCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 146 FAEENDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 146 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
+++. -.|++.++.+.+-|++++...++..+-
T Consensus 192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQE-VKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence 3333 346888899999999999988887663
No 266
>KOG3905|consensus
Probab=99.51 E-value=1.2e-12 Score=99.80 Aligned_cols=162 Identities=14% Similarity=0.250 Sum_probs=113.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE--CCeEEEEEEeeCcchhhhhhhhHhhhccC---
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV--HGEKIKLQIWDTAGQERFRAVTRSYYRGA--- 88 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 88 (218)
..-.|+|+|+.|+||||||.+|.+.+ ...+..+..|....+.. ++.-.++.+|-..|.-....+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34579999999999999999998765 33334455554554433 23345777898888665555555544433
Q ss_pred -CEEEEEEECCChhh-HHHHHHHHHHHhh---------------------------------------------------
Q psy1169 89 -AGALMVYDITRRST-YNHLSSWLTDTKN--------------------------------------------------- 115 (218)
Q Consensus 89 -d~~i~v~d~~~~~s-~~~~~~~~~~~~~--------------------------------------------------- 115 (218)
..+|++.|++++.. ++.+..|...+..
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 35699999999844 4666666554433
Q ss_pred ----------hcCCCCeEEEEeeCCCCCC----C---ccc----cHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 116 ----------LTNPNTVIFLIGNKMDLEG----S---RDV----RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 116 ----------~~~~~~piivv~nK~Dl~~----~---~~~----~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
..+-++|++||.||+|... . +.. ....+++||..++..++.+|+++..|++.++.+|++
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 1112588999999999832 1 111 112378889999999999999999999999999999
Q ss_pred HHHH
Q psy1169 175 KIYQ 178 (218)
Q Consensus 175 ~~~~ 178 (218)
+++-
T Consensus 288 r~yG 291 (473)
T KOG3905|consen 288 RSYG 291 (473)
T ss_pred HhcC
Confidence 8843
No 267
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3e-13 Score=106.30 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=100.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC---------------------------CCCCceeeeEEEEEEEECCe
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP---------------------------DCPHTIGVEFGTRIIEVHGE 62 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 62 (218)
....++++|+|+..+|||||+-+|+... +.. ...+..+.+.......++-.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3567899999999999999999997421 110 00011233333444444445
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHH------HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH------LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
.+.+.|+|+||+..|-.........+|+.|+|+|+.+.+.-.. .++-+ .+.... .-..+||++||+|+..-+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tl-Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTL-GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhc-CCceEEEEEEcccccccC
Confidence 6689999999999888777777788999999999999753211 11111 112211 123478889999998755
Q ss_pred cccHHHHHH----HHHhC-----CCcEEEeccCCCCCHHHH
Q psy1169 137 DVRYDEAKK----FAEEN-----DLIFVEASAMTGENVEQA 168 (218)
Q Consensus 137 ~~~~~~~~~----~~~~~-----~~~~~~~S~~~~~~i~~~ 168 (218)
+..++++.. +.... +++|+++|+..|.|+.+.
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 444444333 33222 366999999999998653
No 268
>KOG1191|consensus
Probab=99.51 E-value=1.4e-13 Score=109.99 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=101.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhh--------hh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRA--------VT 81 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~ 81 (218)
-+..++|+|+|+|++|||||+|.|......-.. .+.++-+ .....++-+.+.+.+.||+|..+ ... -.
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRD--aiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRD--AIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchh--hheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 355699999999999999999999887654322 2222223 33333334456677889999654 111 12
Q ss_pred HhhhccCCEEEEEEEC--CChhhHHHHHHHHHHHhhhc------CCCCeEEEEeeCCCCCCC-ccccHHHHHHHHH---h
Q psy1169 82 RSYYRGAAGALMVYDI--TRRSTYNHLSSWLTDTKNLT------NPNTVIFLIGNKMDLEGS-RDVRYDEAKKFAE---E 149 (218)
Q Consensus 82 ~~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~~~~~~------~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~---~ 149 (218)
..-+..+|++++|+|+ ++-++-..+...+....... ....+++++.||.|+... .+..- ....+.. .
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGR 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccC
Confidence 3346789999999999 44333333333333222111 124778999999998654 21111 0111111 1
Q ss_pred CCCc-EEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 150 NDLI-FVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 150 ~~~~-~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
...+ +.++|++++.|++.+.+.+.+.+...
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 1233 56699999999999998888877554
No 269
>KOG1707|consensus
Probab=99.50 E-value=5.1e-13 Score=108.73 Aligned_cols=171 Identities=16% Similarity=0.216 Sum_probs=125.5
Q ss_pred cccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhH
Q psy1169 3 TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR 82 (218)
Q Consensus 3 ~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (218)
.|+...+...+..+++.|+|+.++|||.+++.++++.+...+..+....+..+.+...+....+.+-|.+-. ....+..
T Consensus 413 ~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ 491 (625)
T KOG1707|consen 413 KLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTS 491 (625)
T ss_pred hhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccC
Confidence 455567778899999999999999999999999999988877777788888888877777777788887754 2221112
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMT 161 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~ 161 (218)
.- ..+|+++++||.+++.+|..+...++.-. .. ...|+++|++|.|+.+..+.....-..++...+++ -+..|...
T Consensus 492 ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~-~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 492 KE-AACDVACLVYDSSNPRSFEYLAEVYNKYF-DL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred cc-ceeeeEEEecccCCchHHHHHHHHHHHhh-hc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC
Confidence 12 67999999999999999988877554322 22 68999999999999765422222226778887765 34555553
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKIYQ 178 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (218)
... .++|..|...+..
T Consensus 569 ~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQY 584 (625)
T ss_pred CCC-chHHHHHHHhhhC
Confidence 222 7888888876643
No 270
>KOG0090|consensus
Probab=99.50 E-value=5.9e-13 Score=95.66 Aligned_cols=115 Identities=18% Similarity=0.270 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc---cCCEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR---GAAGAL 92 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i 92 (218)
-.|+++|+.++|||+|+-.|..+.+..... +.......+.+... .++++|.||+.+.+.....+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 469999999999999999998875433221 22222233333222 3778999999998887777776 789999
Q ss_pred EEEECCCh-hhHHHHHHHHHHHh-hh--cCCCCeEEEEeeCCCCCCC
Q psy1169 93 MVYDITRR-STYNHLSSWLTDTK-NL--TNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 93 ~v~d~~~~-~s~~~~~~~~~~~~-~~--~~~~~piivv~nK~Dl~~~ 135 (218)
||+|...- .-..++.+++-.+. .. ....+|++++.||.|+...
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 99997652 22233333333333 32 2567889999999998543
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.49 E-value=1.2e-12 Score=113.10 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=82.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC----------------CCCCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP----------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (218)
+.+...+|+|+|..++|||||+++|+... ... +..+..+.+.....+.+ ....+.++|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCC
Confidence 34668899999999999999999997421 100 01122333333333333 34678899999
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
|+..|.......+..+|++|+|+|+......+...-|. .+.. .+.|+++++||+|+...
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~---~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK---YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCCCCC
Confidence 99887776777889999999999998775555443332 2332 46888999999998753
No 272
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.46 E-value=1.2e-12 Score=97.53 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeEEEEEEEECCeEEEEEEeeCcchhhh--------hhh---hH
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--------RAV---TR 82 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~---~~ 82 (218)
++|+|+|..|+||||++|.|++......... ..+.........+++ ..+.++||||..+. ..+ ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998876554321 112222233334555 45678999993221 111 11
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCCcccc-------HHHHHHHHHhCCCc
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGSRDVR-------YDEAKKFAEENDLI 153 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 153 (218)
....+.|++|||+.... -+..+. ..++.+....+. -..++|++|..|......+. ....+.+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHHH-HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 23467899999999983 222121 122222222222 23478888888754443311 01244555666666
Q ss_pred EEEeccC------CCCCHHHHHHHHHHHHHHhh
Q psy1169 154 FVEASAM------TGENVEQAFLETAKKIYQNI 180 (218)
Q Consensus 154 ~~~~S~~------~~~~i~~~~~~i~~~~~~~~ 180 (218)
|...+.. ....+.++|+.+-+.+.+.-
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 7776666 33467777777777776653
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.46 E-value=4.5e-13 Score=116.14 Aligned_cols=119 Identities=19% Similarity=0.162 Sum_probs=82.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC---------------CCCC---CCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK---------------FMPD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
..+..+|+|+|+.++|||||+++|+... +... ...+.........+.+++..+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 4567899999999999999999997521 1110 111222222222334566788999999999
Q ss_pred hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
+..|.......++.+|++|+|+|+......+....|. .+. ..+.|+++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhccc
Confidence 9988888888999999999999998754333322222 222 24578889999999853
No 274
>KOG1490|consensus
Probab=99.46 E-value=6.3e-13 Score=106.47 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=117.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----------hhhhhH
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRAVTR 82 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 82 (218)
++.-..+|+|.|++|||||++.+..........+.++......++ +.....++++||||.-. +.+ +.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqs-IT 242 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQI-IT 242 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHH-HH
Confidence 455678999999999999999887766555544444444444443 33456788899999421 111 12
Q ss_pred hhhccCCEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHH---HHHHHHhCCCcEEEe
Q psy1169 83 SYYRGAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE---AKKFAEENDLIFVEA 157 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (218)
...+--.+++|+.|++.. .|...-..+++.+.... .+.|+|+|+||+|+.....++.+. ...+....+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 223334568999998874 66666667777777766 578999999999998877776544 333344467899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169 158 SAMTGENVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (218)
|..+..|+-++-....+.++.+.-+.
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~RVE~ 347 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAARVEQ 347 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHHHHH
Confidence 99999999998888888777664433
No 275
>PRK12740 elongation factor G; Reviewed
Probab=99.46 E-value=2e-12 Score=111.80 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=74.6
Q ss_pred EcCCCCCHHHHHHHHHhCCCC--C----------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhH
Q psy1169 21 IGDMGVGKSCLLHQFTEQKFM--P----------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR 82 (218)
Q Consensus 21 ~G~~g~GKStli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (218)
+|..++|||||+++|+...-. . +..+..+.......+.+ ..+.+.+|||||+..+.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence 699999999999999643211 0 00112222222233333 457889999999998877788
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
.++..+|++|+|+|++.....+....| ..+.. .+.|+++++||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999987666554333 22322 468999999999985
No 276
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.44 E-value=3.7e-12 Score=98.32 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-------h
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-------V 80 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~ 80 (218)
+......++|+|+|.+|+||||++|+|++...... .....+.......... ....+.+|||||..+... .
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHH
Confidence 34446789999999999999999999998664221 1111111111112222 346788999999654321 1
Q ss_pred hHhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCC
Q psy1169 81 TRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGS 135 (218)
Q Consensus 81 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~ 135 (218)
...++ ...|++|||..++.....+.-...++.+....+. -.+.++++|+.|....
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 22222 2689999996655322111111223333332221 2458999999997543
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.44 E-value=2.5e-12 Score=97.72 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=72.4
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh--h------
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--A------ 79 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~------ 79 (218)
.+.....++|+|+|.+|+|||||+|+|++....... ....+.......... ....+.+|||||..... .
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~--~g~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV--DGFKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE--CCeEEEEEECCCcCcchhhHHHHHHH
Confidence 345677899999999999999999999987643321 111112211222222 33568899999965431 0
Q ss_pred --hhHhhhc--cCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCC
Q psy1169 80 --VTRSYYR--GAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEG 134 (218)
Q Consensus 80 --~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~ 134 (218)
....++. ..|++++|..++... ...+ ...++.+....+. -.++++|.||+|...
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 1223333 578888887666532 2221 1233333332222 245899999999753
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.43 E-value=6e-12 Score=111.20 Aligned_cols=143 Identities=22% Similarity=0.247 Sum_probs=94.1
Q ss_pred CHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe----------------EEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------------KIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 27 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
+||||+..|-+..........++-+.....+..+.. .-.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 599999999887766554444444433333333210 0137899999999998888888889999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc----------------HHHHH-------
Q psy1169 91 ALMVYDITRR---STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR----------------YDEAK------- 144 (218)
Q Consensus 91 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----------------~~~~~------- 144 (218)
+++|+|+++. .+++.+. .+.. .++|+++++||+|+....... ..+..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999873 3333332 2222 368999999999986422100 00000
Q ss_pred -HHHH--------------hCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 145 -KFAE--------------ENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 145 -~~~~--------------~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
++.. ...++++++||++|.|+++++..+....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0111 1245799999999999999998776544
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.42 E-value=5.6e-12 Score=92.85 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=63.4
Q ss_pred EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH
Q psy1169 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA 143 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 143 (218)
....++++.|..-...... .-+|.+|.|+|+.+..+... .+..++. ..-++++||.|+.+......+.+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 3455777777321111111 12578999999998766322 1111121 12289999999974322223333
Q ss_pred HHHHH--hCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 144 KKFAE--ENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 144 ~~~~~--~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
.+..+ ..+.+++++|+++|.|++++|+++.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33333 3678899999999999999999998765
No 280
>PTZ00258 GTP-binding protein; Provisional
Probab=99.41 E-value=1.4e-11 Score=98.61 Aligned_cols=88 Identities=23% Similarity=0.184 Sum_probs=60.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchh
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQE 75 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~ 75 (218)
.....++|.++|.|++|||||+|+|.+........+..+.+.....+.+++. ..++.++|+||..
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3466789999999999999999999876654444444444444444444322 2358899999953
Q ss_pred h-------hhhhhHhhhccCCEEEEEEECC
Q psy1169 76 R-------FRAVTRSYYRGAAGALMVYDIT 98 (218)
Q Consensus 76 ~-------~~~~~~~~~~~~d~~i~v~d~~ 98 (218)
. .....-..++.+|++++|+|..
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2 1112233467899999999974
No 281
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.40 E-value=1.7e-11 Score=100.38 Aligned_cols=163 Identities=15% Similarity=0.267 Sum_probs=112.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--eEEEEEEeeCcchhhhhhhhHhhhccC---
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG--EKIKLQIWDTAGQERFRAVTRSYYRGA--- 88 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 88 (218)
..-.|+|+|..++|||||+.+|.+.+ ...++.+.+|....+.-++ ....+.+|...|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999997644 3345556666555543322 234788999988666666665554422
Q ss_pred -CEEEEEEECCChhhH-HHHHHHHHHHhh--------------------------------h-----------c------
Q psy1169 89 -AGALMVYDITRRSTY-NHLSSWLTDTKN--------------------------------L-----------T------ 117 (218)
Q Consensus 89 -d~~i~v~d~~~~~s~-~~~~~~~~~~~~--------------------------------~-----------~------ 117 (218)
-++|+|+|.+.+..+ +.+..|+..+.. . .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 357999999998664 344555443222 0 0
Q ss_pred -------------CCCCeEEEEeeCCCCCC----Cccc-------cHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 118 -------------NPNTVIFLIGNKMDLEG----SRDV-------RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 118 -------------~~~~piivv~nK~Dl~~----~~~~-------~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
+-++|++||.+|+|... .... ...-.+.+|..+++.++.+|.+...+++.++.+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 01489999999999642 1111 11236777888999999999999999999999999
Q ss_pred HHHHHh
Q psy1169 174 KKIYQN 179 (218)
Q Consensus 174 ~~~~~~ 179 (218)
++++..
T Consensus 261 h~l~~~ 266 (472)
T PF05783_consen 261 HRLYGF 266 (472)
T ss_pred HHhccC
Confidence 888543
No 282
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.39 E-value=4.1e-11 Score=94.52 Aligned_cols=118 Identities=23% Similarity=0.271 Sum_probs=83.7
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh----------hhHHHHHHHHHHHhhhcC-CCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDTKNLTN-PNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~piivv~nK~ 130 (218)
..+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....++.+..... .+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457788999999999999999999999999999999873 223333333443333221 479999999999
Q ss_pred CCCCC----------------ccccHHHHHHHHHh----------CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 131 DLEGS----------------RDVRYDEAKKFAEE----------NDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 131 Dl~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
|+... .....+.+..+... ..+..+.++|.+..++..+|+.+.+.++..
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 96211 02233444444322 233456799999999999999999888764
No 283
>KOG1532|consensus
Probab=99.38 E-value=1.5e-12 Score=97.08 Aligned_cols=169 Identities=18% Similarity=0.252 Sum_probs=97.2
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeEEEEEE--------------------------------
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT-IGVEFGTRII-------------------------------- 57 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~-------------------------------- 57 (218)
..+...-|+|+|..|+|||||++||...-.....++. +..+.....+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 4567788999999999999999999643222211110 0000000000
Q ss_pred ---------------EECCeEEEEEEeeCcchhhh------hhhhHhhhc--cCCEEEEEEECCChhhH-HHHHHHHHHH
Q psy1169 58 ---------------EVHGEKIKLQIWDTAGQERF------RAVTRSYYR--GAAGALMVYDITRRSTY-NHLSSWLTDT 113 (218)
Q Consensus 58 ---------------~~~~~~~~~~i~D~~G~~~~------~~~~~~~~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~~ 113 (218)
.-....+...++||||+.+. ..++...+. ..-++++++|.....+. --+.+.+-.+
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 00112345779999997541 122222232 33456777776543221 1233444445
Q ss_pred hhhcCCCCeEEEEeeCCCCCCCcc-----ccHHHHHHHHH-------------------h--CCCcEEEeccCCCCCHHH
Q psy1169 114 KNLTNPNTVIFLIGNKMDLEGSRD-----VRYDEAKKFAE-------------------E--NDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 114 ~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~-------------------~--~~~~~~~~S~~~~~~i~~ 167 (218)
....+...|.++++||.|+.+..- .+++..++... + .++..+-||+.+|.|+++
T Consensus 175 Silyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 175 SILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred HHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 555567899999999999965421 11111111111 0 255688999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1169 168 AFLETAKKIYQN 179 (218)
Q Consensus 168 ~~~~i~~~~~~~ 179 (218)
+|..+.+.+-+.
T Consensus 255 f~~av~~~vdEy 266 (366)
T KOG1532|consen 255 FFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHH
Confidence 998888776444
No 284
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=2.9e-12 Score=97.35 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=77.5
Q ss_pred hhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc
Q psy1169 75 ERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI 153 (218)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (218)
+++..+.+.++.++|++++|||+.++. +++.+..|+..+.. .++|+++|+||+||...+.+..+.+..+. ..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 456677788999999999999999877 89999999876543 57999999999999765544434444443 47888
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q psy1169 154 FVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 154 ~~~~S~~~~~~i~~~~~~i~~ 174 (218)
++++||+++.|++++|+.+.+
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999987764
No 285
>PRK13768 GTPase; Provisional
Probab=99.37 E-value=5.2e-12 Score=96.50 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=69.0
Q ss_pred EEEEeeCcchhhh---hhhhHhhhc---c--CCEEEEEEECCChhhHHHHHH--HHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 65 KLQIWDTAGQERF---RAVTRSYYR---G--AAGALMVYDITRRSTYNHLSS--WLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 65 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
.+.+||+||..+. ...+..+++ . .+++++++|+........... |+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6789999997653 233333333 2 889999999976544333221 22211111 24799999999999865
Q ss_pred CccccH--HHHH---------------------H---HHHhC--CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 135 SRDVRY--DEAK---------------------K---FAEEN--DLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 135 ~~~~~~--~~~~---------------------~---~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
..+... .... . ..... ..+++++|++++.|+++++++|.+.+
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 533211 0000 0 11122 25789999999999999999887765
No 286
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=8.9e-12 Score=84.84 Aligned_cols=114 Identities=29% Similarity=0.324 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997777654332 2221 222234456778999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
|+.....+++.+ |...+....+...|.++++||.|+...+.+..+.. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999998766 77666655556788999999999854333332222 235678888888874
No 287
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.36 E-value=6.6e-12 Score=110.53 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=82.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCC--C--------------CCCCceeeeEEEEEEEE--------------CC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P--------------DCPHTIGVEFGTRIIEV--------------HG 61 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~ 61 (218)
++...+|+|+|..++|||||+++|+...-. . +.....+.......+.+ +.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 567889999999999999999999854311 0 00111122211112222 12
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
..+.+.++||||+.+|.......++.+|++|+|+|+......+...-|. .+. ..++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHH---HCCCCEEEEEECCccc
Confidence 3677889999999999888888899999999999999876554443333 232 2578999999999985
No 288
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.34 E-value=1.2e-10 Score=92.59 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=82.3
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh----------hhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDTKNLT-NPNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piivv~nK~ 130 (218)
..+.+.+||.+|+...+..|..++.+++++|||+|+++- ..+.+....++.+.... -.+.|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 345678999999999999999999999999999999973 23334334444443321 1479999999999
Q ss_pred CCCCC--------------c-cccHHHHHHHHHh-----------CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 131 DLEGS--------------R-DVRYDEAKKFAEE-----------NDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 131 Dl~~~--------------~-~~~~~~~~~~~~~-----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
|+... . ....+.+..+... ..+..+.++|.+..++..+|+.+.+.+++.
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 97311 0 0123333333321 123466789999999999999988888765
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.34 E-value=1.3e-11 Score=108.60 Aligned_cols=118 Identities=18% Similarity=0.155 Sum_probs=81.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCC--CC--------------CCCCceeeeEEEEEEEEC--------CeEEEEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF--MP--------------DCPHTIGVEFGTRIIEVH--------GEKIKLQ 67 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (218)
.+...+|+|+|..++|||||+++|+...- .. +.....+.......+.+. +..+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45667999999999999999999986321 10 011111222111122222 2256788
Q ss_pred EeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
|+||||+.+|.......++.+|++|+|+|+...-..+... .+..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHHH---cCCCEEEEEEChhhh
Confidence 9999999998887888899999999999999875544332 2333332 468999999999985
No 290
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.33 E-value=3.9e-11 Score=92.62 Aligned_cols=151 Identities=23% Similarity=0.261 Sum_probs=99.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---------------------------------CCCCceeeeEEEEEEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---------------------------------DCPHTIGVEFGTRIIE 58 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 58 (218)
.+..+|.+-+|...-||||||-||+...-.- +....++++...+-
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy-- 80 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY-- 80 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee--
Confidence 4567999999999999999999998643110 00111233322222
Q ss_pred ECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 59 VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
+.-..-.|+|-||||++.|-.....-...+|+.|+++|+...-.-|.-+. ..+.... .-..+++..||+||.+..+-
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH--s~I~sLL-GIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH--SFIASLL-GIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH--HHHHHHh-CCcEEEEEEeeecccccCHH
Confidence 22234478899999999998766666778999999999966533222222 1233222 12457888999999887654
Q ss_pred cHHH----HHHHHHhCCCc---EEEeccCCCCCHHH
Q psy1169 139 RYDE----AKKFAEENDLI---FVEASAMTGENVEQ 167 (218)
Q Consensus 139 ~~~~----~~~~~~~~~~~---~~~~S~~~~~~i~~ 167 (218)
.++. ...|+...++. ++++||+.|+|+..
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 4433 44566665554 89999999998753
No 291
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.32 E-value=1.5e-11 Score=91.37 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=40.8
Q ss_pred CCeEEEEeeCCCCCCCccccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 120 NTVIFLIGNKMDLEGSRDVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 120 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
..|.++++||+|+............+.... ...+++++|++++.|++++++++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 356799999999965432222334444433 34789999999999999999998864
No 292
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.32 E-value=1.1e-10 Score=87.74 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=83.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
......|+|+|.+|+|||||++.++............+. ..+ .......+.++|+||.. ..+ ....+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 345578999999999999999999864211111111110 111 12245567899999864 222 2346889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeE-EEEeeCCCCCCCcccc---HHHHHH-HHH--hCCCcEEEeccCCCCC
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDLEGSRDVR---YDEAKK-FAE--ENDLIFVEASAMTGEN 164 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~~~---~~~~~~-~~~--~~~~~~~~~S~~~~~~ 164 (218)
++++|+......+.. .++..+.. .+.|. ++|+||+|+....... ....+. +.. ..+.+++.+||++...
T Consensus 108 llviDa~~~~~~~~~-~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 108 LLLIDASFGFEMETF-EFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEEecCcCCCHHHH-HHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 999999875443332 23333322 35664 5599999986432211 111222 221 2456799999998743
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.31 E-value=3.9e-11 Score=94.36 Aligned_cols=110 Identities=11% Similarity=0.048 Sum_probs=70.3
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cH
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RY 140 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~ 140 (218)
.+.+.|+||+|....... ....+|.++++.+.......+.+.. .+.. ..-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence 467889999997643322 4667999999977555555544332 1111 123899999998654321 11
Q ss_pred HHHHHHHHh-------CCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169 141 DEAKKFAEE-------NDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 141 ~~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (218)
.+....... +..+++.+|++++.|++++++.+.+.+-...+..
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg 266 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASG 266 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCC
Confidence 223322222 3367999999999999999999988765444433
No 294
>KOG1144|consensus
Probab=99.31 E-value=1.3e-11 Score=103.11 Aligned_cols=164 Identities=20% Similarity=0.192 Sum_probs=108.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC----------------CeEEEEEEeeCcchhhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------------GEKIKLQIWDTAGQERF 77 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~ 77 (218)
+..=|||+|...+|||-|+..+-+..........++-......+... -..-.+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 34569999999999999999998766554433333222211111111 01125678999999999
Q ss_pred hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC------ccc-------------
Q psy1169 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS------RDV------------- 138 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------~~~------------- 138 (218)
..+.......||++|+|+|+...-..+.+. .+..++..+.|+||.+||+|..-. ..+
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiE----Si~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE----SINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhH----HHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 999999999999999999998863333332 233344478999999999995211 000
Q ss_pred -----cHHHHHHHHHh-CC-------------CcEEEeccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169 139 -----RYDEAKKFAEE-ND-------------LIFVEASAMTGENVEQAFLETAKKIYQNIK 181 (218)
Q Consensus 139 -----~~~~~~~~~~~-~~-------------~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~ 181 (218)
...-+.+|+.+ ++ +.++++||..|.||.+++-+|++.....+.
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 00012222222 11 236899999999999999999988766543
No 295
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.30 E-value=2.7e-10 Score=90.31 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeE---------------EEEEEeeCcchhh----
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK---------------IKLQIWDTAGQER---- 76 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---- 76 (218)
++|.++|.|++|||||+|+|.+........+..+.+.....+.+++.. .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 799999999999999999999876443333444444444444444321 3588999999532
Q ss_pred ---hhhhhHhhhccCCEEEEEEECC
Q psy1169 77 ---FRAVTRSYYRGAAGALMVYDIT 98 (218)
Q Consensus 77 ---~~~~~~~~~~~~d~~i~v~d~~ 98 (218)
.....-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112223467899999999984
No 296
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.30 E-value=6.8e-11 Score=94.34 Aligned_cols=144 Identities=24% Similarity=0.252 Sum_probs=98.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQK--FMP------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (218)
.-+|+|+.....|||||+..|+... |.+ ....-.+++.-.+..-+..+.+.+.|+||||+..|.-.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4579999999999999999998532 222 11112344444444344556688999999999999999
Q ss_pred hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHH-------HhCCC
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFA-------EENDL 152 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~-------~~~~~ 152 (218)
.+..+.-+|++++++|+.+..-.|.- -.+ ......+.+.|+|.||+|.+..+.. ..+++.++. .+.++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQTr-FVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQTR-FVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCchh-hhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 99999999999999999986433221 111 1222246677899999998776532 123344443 23678
Q ss_pred cEEEeccCCC
Q psy1169 153 IFVEASAMTG 162 (218)
Q Consensus 153 ~~~~~S~~~~ 162 (218)
|++..|++.|
T Consensus 161 PivYAS~~~G 170 (603)
T COG1217 161 PIVYASARNG 170 (603)
T ss_pred cEEEeeccCc
Confidence 8999999865
No 297
>KOG0461|consensus
Probab=99.28 E-value=4.4e-10 Score=86.73 Aligned_cols=162 Identities=19% Similarity=0.271 Sum_probs=97.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCceeeeEEEEEEEE-------CCeEEEEEEeeCcchhhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPHTIGVEFGTRIIEV-------HGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~ 78 (218)
+-.+++.++|...+|||||.++|.... .+.+..+..+.+.....+.+ .+..+++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 445999999999999999999996422 22222333444444333332 3456799999999987655
Q ss_pred hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC--ccccH-HHHHHHHH---h---
Q psy1169 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS--RDVRY-DEAKKFAE---E--- 149 (218)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~-~~~~~~~~---~--- 149 (218)
........-.|..++|+|+...-.-+.++.++ +.... -...++|+||.|.... |.-.. +..+++.+ .
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 44444444557779999998876555555533 22222 1235777788776432 22111 22222222 1
Q ss_pred -CCCcEEEeccCCC----CCHHHHHHHHHHHHHH
Q psy1169 150 -NDLIFVEASAMTG----ENVEQAFLETAKKIYQ 178 (218)
Q Consensus 150 -~~~~~~~~S~~~~----~~i~~~~~~i~~~~~~ 178 (218)
.+.|++++|+..| ..+.++.+.+-+++++
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 3578999999999 4555555555444443
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.28 E-value=9e-12 Score=108.39 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=80.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC--------------CCCceeeeEEEE--EEEECCeEEEEEEeeCcc
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF--MPD--------------CPHTIGVEFGTR--IIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~--~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G 73 (218)
.++.-+|+|+|+.++|||||+.+|+...- ... .....+...... .+.+++..+.+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 46677899999999999999999985321 100 000111111111 122344577889999999
Q ss_pred hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
+..|.......+..+|++|+|+|+......+...-|. .+.. .+.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH---cCCCeEEEEECchhh
Confidence 9998888888899999999999998865443333333 2222 346788999999975
No 299
>KOG0458|consensus
Probab=99.25 E-value=7.3e-11 Score=96.39 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=103.5
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCC-----------------------------CCCCCceeeeEEEEEEEEC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-----------------------------PDCPHTIGVEFGTRIIEVH 60 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (218)
.+....+.++|+|...+|||||+.+++..--. ....+..++........++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34567899999999999999999998642100 0111223444445555555
Q ss_pred CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh---HHH---HHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YNH---LSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
-....+.|+|+||+..|-.....-...+|+.|+|+|++-.+- |+. .++-.. +.+..+ -..++|++||+|+.+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~-llr~Lg-i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHAL-LLRSLG-ISQLIVAINKMDLVS 329 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHH-HHHHcC-cceEEEEeecccccC
Confidence 666788999999998888777777788999999999987532 221 112111 222221 344889999999976
Q ss_pred CccccHHHHHH----HH-Hh-----CCCcEEEeccCCCCCHHHH
Q psy1169 135 SRDVRYDEAKK----FA-EE-----NDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 135 ~~~~~~~~~~~----~~-~~-----~~~~~~~~S~~~~~~i~~~ 168 (218)
-.+..+++++. |. +. .++.++++|++.|.|+-..
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 55444454333 33 22 3456999999999987654
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.24 E-value=3.6e-11 Score=90.85 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=57.5
Q ss_pred EEEEeeCcchhhhhhhhHhhh--------ccCCEEEEEEECCChhhHHH-HHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 65 KLQIWDTAGQERFRAVTRSYY--------RGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
.+.|+||||+.++...+.... ...-++++++|.....+... +..++..+.....-+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 678999999987655333332 34456799999875443222 233333333333357999999999999762
Q ss_pred cc------------c-------cHHHHHHHH---HhCC-C-cEEEeccCCCCCHHHHHHHHHHH
Q psy1169 136 RD------------V-------RYDEAKKFA---EEND-L-IFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 136 ~~------------~-------~~~~~~~~~---~~~~-~-~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
.. . .....++++ ...+ . .++++|+.++.++.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 10 0 001111222 2223 3 58999999999999988766554
No 301
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.22 E-value=5.9e-10 Score=86.20 Aligned_cols=138 Identities=17% Similarity=0.291 Sum_probs=77.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC----------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER------- 76 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 76 (218)
-.++|+|+|.+|+|||||+|.|+........ ..+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999875443321 22334444444455577888999999999221
Q ss_pred -----------hhhhhHh---------hhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 77 -----------FRAVTRS---------YYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 77 -----------~~~~~~~---------~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
|...... .=.++|++||.++.+... .-.++ ..++.+. ..+++|-|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCH
Confidence 1111000 013568999999986531 22223 2333333 46889999999998654
Q ss_pred ccccH--HHHHHHHHhCCCcEEE
Q psy1169 136 RDVRY--DEAKKFAEENDLIFVE 156 (218)
Q Consensus 136 ~~~~~--~~~~~~~~~~~~~~~~ 156 (218)
.++.. ..+.+-....++.++.
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S--
T ss_pred HHHHHHHHHHHHHHHHcCceeec
Confidence 43321 2344444567776554
No 302
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.3e-10 Score=97.82 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=87.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC------------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP------------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
....-+|.|+|+.++|||||..+|+...-.. +..+.+++......+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 5778899999999999999999998432111 1111233333333333333 58899999999
Q ss_pred hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
|.+|.......++-+|++++|+|+......+.-.-|.+.. ..++|.++++||+|..
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRL 141 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECcccc
Confidence 9999999999999999999999999987666655554433 3689999999999963
No 303
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.21 E-value=3.7e-10 Score=80.70 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=86.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEE-------------EEEEE-CC-------------------
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT-------------RIIEV-HG------------------- 61 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~------------------- 61 (218)
.++|-|.|++|||||+|+.+++..-.......-+..+.++ ..+.+ .+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 6899999999999999999976421111000001111111 01101 00
Q ss_pred --eEEEEEEeeCcchhhhhhhhHhhhccCC-EEEEEEECCChhhHHHHHHHHHHHhhhcCCC--CeEEEEeeCCCCCCCc
Q psy1169 62 --EKIKLQIWDTAGQERFRAVTRSYYRGAA-GALMVYDITRRSTYNHLSSWLTDTKNLTNPN--TVIFLIGNKMDLEGSR 136 (218)
Q Consensus 62 --~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~Dl~~~~ 136 (218)
....+.|++..|. .- ....+.-.| .-|+|+|+...+-.. ....+. ..=++|+||.||...-
T Consensus 93 ~~~~~Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P----------~K~gP~i~~aDllVInK~DLa~~v 158 (202)
T COG0378 93 DFPDLDLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIP----------RKGGPGIFKADLLVINKTDLAPYV 158 (202)
T ss_pred cCCcCCEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCc----------ccCCCceeEeeEEEEehHHhHHHh
Confidence 1135556666661 10 111122234 668888888765311 110111 1248899999998776
Q ss_pred cccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 137 DVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
..+.+.+.+-++. .+.+++++|.++|.|++++++++....
T Consensus 159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 6666666555554 678899999999999999998887654
No 304
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.20 E-value=5.1e-10 Score=93.79 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=73.4
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------h-
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------A- 79 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~- 79 (218)
..+-...++|+|+|.+|+||||++|.|++........ ...+........... ...+.++||||..... .
T Consensus 112 ~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeI 189 (763)
T TIGR00993 112 QDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKI 189 (763)
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHH
Confidence 3444567899999999999999999999876433221 111111111112223 3568899999965321 1
Q ss_pred --hhHhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCC--CeEEEEeeCCCCCC
Q psy1169 80 --VTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN--TVIFLIGNKMDLEG 134 (218)
Q Consensus 80 --~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~Dl~~ 134 (218)
....++. .+|++|+|+.++.......-..+++.+....+.. ..+|||+|+.|...
T Consensus 190 Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 190 LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1222333 5899999998764433212223444454444332 33788899998754
No 305
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.20 E-value=5.3e-10 Score=84.21 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=45.5
Q ss_pred EEEEEeeCcchhh-------------hhhhhHhhhcc-CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeC
Q psy1169 64 IKLQIWDTAGQER-------------FRAVTRSYYRG-AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129 (218)
Q Consensus 64 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK 129 (218)
..+.++|+||... ...+...|+++ .+++++|+|+...-.-+....+.+.+. ..+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4778999999631 22356667774 458899999876433333223333333 256889999999
Q ss_pred CCCCCC
Q psy1169 130 MDLEGS 135 (218)
Q Consensus 130 ~Dl~~~ 135 (218)
.|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 306
>KOG3886|consensus
Probab=99.20 E-value=7.7e-11 Score=85.96 Aligned_cols=147 Identities=19% Similarity=0.315 Sum_probs=90.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-----hhhHhhhccC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-----AVTRSYYRGA 88 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~~ 88 (218)
.-||+++|.+|+|||++-..+..+... .....+.+++..-.++.+ -+++.+.+||.+|++.+- ......++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf-lGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF-LGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh-hhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999965554432211 111222222322222222 245788999999998432 2445678899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhh--cCCCCeEEEEeeCCCCCCC--ccccHHHHHH----HHHhCCCcEEEeccC
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNL--TNPNTVIFLIGNKMDLEGS--RDVRYDEAKK----FAEENDLIFVEASAM 160 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~--~~~~~~~~~~----~~~~~~~~~~~~S~~ 160 (218)
+++|++||++..+-..++..+-+.+... ..+...+++..+|.|+... ++..+.+..+ +....++.++++|.+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 9999999999987766665544422222 2367779999999998643 3333333222 223345667788876
Q ss_pred CC
Q psy1169 161 TG 162 (218)
Q Consensus 161 ~~ 162 (218)
+.
T Consensus 163 De 164 (295)
T KOG3886|consen 163 DE 164 (295)
T ss_pred hH
Confidence 44
No 307
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.3e-10 Score=88.78 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=103.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCceeeeE--E-----------------EEE-EEEC----CeEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPHTIGVEF--G-----------------TRI-IEVH----GEKIK 65 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~---~~~~~~~~~~~~~--~-----------------~~~-~~~~----~~~~~ 65 (218)
+..++|.++|...-|||||...|.+-- ++++..+.++... . ... .... .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999986421 1111111111100 0 000 0000 11236
Q ss_pred EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHH
Q psy1169 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEA 143 (218)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~ 143 (218)
+.|+|.||++-.-..--+-..-.|+.|+|++++.+-...+..+-+-.+.... -..++++-||.|+..... -.++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7799999998654433333455799999999998643333333222222221 345889999999975432 244667
Q ss_pred HHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 144 KKFAEE---NDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 144 ~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
++|.+. .+.|++++||..+.|++.+++.|.+.+-
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 777765 5789999999999999988888877763
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.19 E-value=2e-10 Score=82.52 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=45.3
Q ss_pred EEEEeeCcchhh----hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCC
Q psy1169 65 KLQIWDTAGQER----FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130 (218)
Q Consensus 65 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~ 130 (218)
.+.|+|+||... ...++..+++.+|++|+|.++....+-.....+.+...... ..+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence 467999999643 33578888899999999999999766555555555554432 3388888884
No 309
>KOG0705|consensus
Probab=99.17 E-value=1.5e-10 Score=93.96 Aligned_cols=165 Identities=22% Similarity=0.370 Sum_probs=123.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
-..+|+.|+|..++|||+|+++++.+.|.....+. +..+ .+++.++++...+.+.|-+|... ..|...+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~-kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRF-KKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCc-Cccc-eeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 35689999999999999999999999887664433 3333 55566788888888899888432 45667899999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCC--CccccHHHHHHHHHh-CCCcEEEeccCCCCCHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEG--SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~ 168 (218)
|||.+.+..+|+.+..+...+..+.. ..+|.++++++.-+.. .+.+...+.+.++.. ..+.||++++..|.++..+
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence 99999999999999877665554332 4677888887755432 344444555555544 5677999999999999999
Q ss_pred HHHHHHHHHHhhhcCc
Q psy1169 169 FLETAKKIYQNIKDGK 184 (218)
Q Consensus 169 ~~~i~~~~~~~~~~~~ 184 (218)
|..+...+....+.+.
T Consensus 181 f~~~~~k~i~~~~~qq 196 (749)
T KOG0705|consen 181 FQEVAQKIVQLRKYQQ 196 (749)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999988877644433
No 310
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.17 E-value=2.9e-10 Score=90.22 Aligned_cols=160 Identities=11% Similarity=0.133 Sum_probs=76.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCc--eeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh-----
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHT--IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY----- 84 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----- 84 (218)
...++|+|+|.+|+|||||||.|.+-..... ..++ ...+.....+..+.. -++.+||.||......-...|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4568999999999999999999965332211 1111 111121222222222 268899999965322222333
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC-------CCcccc----HHHHHHHHHh----
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE-------GSRDVR----YDEAKKFAEE---- 149 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-------~~~~~~----~~~~~~~~~~---- 149 (218)
+..-|.+|++.+..=.+. ++ .+.+.+.. -+.|+++|-+|.|.. .++... .+.+++.+..
T Consensus 112 ~~~yD~fiii~s~rf~~n--dv-~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN--DV-QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESSS--HH--HH-HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCCCCchh--hH-HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 456788777765432221 11 22333443 468899999999951 111111 1233333322
Q ss_pred CC---CcEEEeccCCC--CCHHHHHHHHHHHHHHh
Q psy1169 150 ND---LIFVEASAMTG--ENVEQAFLETAKKIYQN 179 (218)
Q Consensus 150 ~~---~~~~~~S~~~~--~~i~~~~~~i~~~~~~~ 179 (218)
.+ .++|-+|..+- .++..+.+.+.+.+-.+
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 23 35888998875 45666666666655433
No 311
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.15 E-value=2.8e-09 Score=84.91 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=85.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC----CCC-------------CCCCC-c-eeeeEE-----EEEEE-ECCeEEEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ----KFM-------------PDCPH-T-IGVEFG-----TRIIE-VHGEKIKLQ 67 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~----~~~-------------~~~~~-~-~~~~~~-----~~~~~-~~~~~~~~~ 67 (218)
.-.+-|.|+|+.++|||||+++|.+. ... .+... + .+++.. ...+. .++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34588999999999999999999876 222 11111 1 111111 11222 244556788
Q ss_pred EeeCcchhh-------------------------hhh----hhHhhhc-cCCEEEEEE-ECC----ChhhHHHH-HHHHH
Q psy1169 68 IWDTAGQER-------------------------FRA----VTRSYYR-GAAGALMVY-DIT----RRSTYNHL-SSWLT 111 (218)
Q Consensus 68 i~D~~G~~~-------------------------~~~----~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~ 111 (218)
++||+|... |.. -....+. ++++.|+|. |.+ .++.+... ..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999321 000 0233344 899998888 764 11222222 23444
Q ss_pred HHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169 112 DTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT 161 (218)
Q Consensus 112 ~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (218)
.+. ..++|+++++|+.|-.... ..+....+...++.+++.+|+.+
T Consensus 175 eLk---~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 175 ELK---ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred HHH---hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence 444 3679999999999942221 33445566666788878777654
No 312
>KOG0082|consensus
Probab=99.15 E-value=3.2e-09 Score=83.33 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=82.7
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh-------HHHHHHHHHHHhhhcC----CCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST-------YNHLSSWLTDTKNLTN----PNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~piivv~nK~ 130 (218)
....+.++|.+|+..-+..|.+++.+++++|||+++++-.. .+.+.+-++.+..... .+.++|+++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 44778899999999888899999999999999999987322 2334333333333332 378899999999
Q ss_pred CCCCC--------------cc-ccHHHHHHHHH--------h--CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 131 DLEGS--------------RD-VRYDEAKKFAE--------E--NDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 131 Dl~~~--------------~~-~~~~~~~~~~~--------~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
|+-.. .. ...+++..+.. . ..+.+..+.|.+..+|+.+|+.+.+.++++
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 98211 11 23334444332 1 234466789999999999999999988775
No 313
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.15 E-value=7.4e-10 Score=86.88 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=63.8
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH-
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD- 141 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~- 141 (218)
.+.+.|+||+|..... ......+|.++++...... +++......+ .+.|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678899999854322 2345667888877443333 3333332222 24667999999998654321100
Q ss_pred -----HHHHHHH---hCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 142 -----EAKKFAE---ENDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 142 -----~~~~~~~---~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
....+.. .+..+++++|++++.|++++++++.+..-
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0011111 13346899999999999999999988643
No 314
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.09 E-value=1.3e-09 Score=82.91 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=99.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC-----------CCCCCCCce---------------eeeEEEEEEE--------
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK-----------FMPDCPHTI---------------GVEFGTRIIE-------- 58 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~-----------~~~~~~~~~---------------~~~~~~~~~~-------- 58 (218)
.+...|.|.|.||+|||||+..|...- ..++.+.+- ....+.+.+.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 455789999999999999999885311 111111110 1111111111
Q ss_pred ----------ECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q psy1169 59 ----------VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGN 128 (218)
Q Consensus 59 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~n 128 (218)
++...+.+.|++|.|....+. ....-+|.++++.-..-....|.++.-+.++.. ++|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEe
Confidence 112346788999998655442 234568999888887777777777665544443 89999
Q ss_pred CCCCCCCccccHHH--HHHHH------HhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169 129 KMDLEGSRDVRYDE--AKKFA------EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 129 K~Dl~~~~~~~~~~--~~~~~------~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (218)
|.|.........+. +..+. ..+..+++.+||.++.|++++++.+.+........+
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 99964332111111 11112 125677999999999999999998887765544433
No 315
>KOG0410|consensus
Probab=99.08 E-value=4.7e-10 Score=85.86 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=101.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh---------hhhhhhHhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRSY 84 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 84 (218)
...-|.|+|..++|||||++.|.+-...+...-..+.+........+.+. .+.+.||.|.- .|... -..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT-Lee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT-LEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH-HHH
Confidence 34568999999999999999998665555444444444444444444333 55678999932 23332 223
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe----EEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV----IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
...+|.++.|.|++.+..-+.....+..+....-+..| ++=|-||.|......-. +.+. .+.+|++
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~---------E~n~-~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE---------EKNL-DVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc---------ccCC-ccccccc
Confidence 56799999999999998776666655555544322233 45567888874432111 1122 5789999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy1169 161 TGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~ 179 (218)
+|+|++++++.+-......
T Consensus 325 tgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVASE 343 (410)
T ss_pred cCccHHHHHHHHHHHhhhh
Confidence 9999999998887777554
No 316
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.3e-09 Score=85.14 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCC------CC------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE--QKF------MP------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~--~~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
-..+|+-.|.+|||||-+.|+- +.. .. +.....++...+..+.++.....++|.||||++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3468899999999999999862 111 00 000113444445555555567778899999999
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN 150 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (218)
.|..-....+..+|..++|+|+...-.-+.+ ++++.+.. .++||+-++||.|.....+ .+...+..+..
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcrl---R~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L 161 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCRL---RDIPIFTFINKLDREGRDP--LELLDEIEEEL 161 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHhh---cCCceEEEeeccccccCCh--HHHHHHHHHHh
Confidence 9988888889999999999999886544333 44554544 5799999999999754332 24444444333
No 317
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.1e-09 Score=84.60 Aligned_cols=154 Identities=17% Similarity=0.105 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKF---MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
-|.-.|.-.-|||||++.+.+... .+.....++.+ ......+..+..+.|+|.||++++-...-..+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiD--lg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITID--LGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEe--eeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 467789999999999999976443 22333333333 3333344444578899999999988777777788999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh---CCCcEEEeccCCCCCHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE---NDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~ 170 (218)
|++.++.-..+..+... +.... .....++|+||+|..+...+ .+..++.... .+.+++.+|+.+|.|++++-+
T Consensus 80 vV~~deGl~~qtgEhL~--iLdll-gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTGEHLL--ILDLL-GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhHHHHH--HHHhc-CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 99998776655554432 22222 12336899999998654322 1233333332 456789999999999999999
Q ss_pred HHHHHH
Q psy1169 171 ETAKKI 176 (218)
Q Consensus 171 ~i~~~~ 176 (218)
.|.+..
T Consensus 156 ~l~~L~ 161 (447)
T COG3276 156 ELIDLL 161 (447)
T ss_pred HHHHhh
Confidence 999887
No 318
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.07 E-value=1.3e-08 Score=79.52 Aligned_cols=139 Identities=14% Similarity=0.241 Sum_probs=88.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-----
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----- 77 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----- 77 (218)
.-.+.|+++|++|.|||||+|.|++...... ..++.........+.-++-.+++.++||||..++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4568999999999999999999987633322 2345555555556655777889999999993221
Q ss_pred ---------hhhhHhhh--------------ccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 78 ---------RAVTRSYY--------------RGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 78 ---------~~~~~~~~--------------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
......|+ .++|++||.+..+... +..++ ..++.+.. .+-+|-|..|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI-e~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI-EAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH-HHHHHHhc----ccCeeeeeeccccC
Confidence 01111111 2568889988865532 22222 23333443 45578889999986
Q ss_pred CCccccH--HHHHHHHHhCCCcEEE
Q psy1169 134 GSRDVRY--DEAKKFAEENDLIFVE 156 (218)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~~~~~~~ 156 (218)
...++.. +.+.+....+++++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 6544322 3455666678888774
No 319
>KOG0468|consensus
Probab=99.05 E-value=1.7e-09 Score=89.84 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=84.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------ceeeeEEEEEE---EECCeEEEEEEeeC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-----------------TIGVEFGTRII---EVHGEKIKLQIWDT 71 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~D~ 71 (218)
+....++.++|+-+.|||+|+..|.....+.-... ..++......+ ..++..+-++|+||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 47889999999999999999999976544322111 11111111111 12567788999999
Q ss_pred cchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132 (218)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 132 (218)
||+..|.......++-+|++++++|+.+.-.++.-. .+ ......+.|+++|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~i---khaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-II---KHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HH---HHHHhccCcEEEEEehhHH
Confidence 999999998889999999999999999987764432 22 2233367999999999995
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.03 E-value=1.4e-09 Score=83.66 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=39.7
Q ss_pred CeEEEEeeCCCCCCCccccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 121 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
.+-++|+||+|+........+...+..+. ...+++++|++++.|+++++++|.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44699999999965322223333333333 56789999999999999999998764
No 321
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=5.4e-09 Score=79.19 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=97.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHh---CC-------------CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTE---QK-------------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
...-++|..+|.-.-|||||...+.. .. .+++ ...+++....++.++-.+-.+-.+|+||+.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccCCChH
Confidence 34568999999999999999988742 11 1111 223455556666665555567788999999
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhCC
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEND 151 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 151 (218)
+|-..-..-....|+.|+|+++.+..-.+.-+.. .....-++| +++++||+|+.+++++. ..+++++...++
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----LlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 8876555556678999999999997554444432 222335676 67778999998765543 234667777765
Q ss_pred C-----cEEEeccCC
Q psy1169 152 L-----IFVEASAMT 161 (218)
Q Consensus 152 ~-----~~~~~S~~~ 161 (218)
+ |++.-|++.
T Consensus 163 f~gd~~Pii~gSal~ 177 (394)
T COG0050 163 FPGDDTPIIRGSALK 177 (394)
T ss_pred CCCCCcceeechhhh
Confidence 4 477777764
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2e-08 Score=78.91 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=60.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC----------------eEEEEEEeeCcchhh--
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG----------------EKIKLQIWDTAGQER-- 76 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~~-- 76 (218)
.+++.|+|.|+||||||+|.+..........|..+++.....+.++. ....+.++|++|...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998776555556666665555554321 235778999999432
Q ss_pred -----hhhhhHhhhccCCEEEEEEECCC
Q psy1169 77 -----FRAVTRSYYRGAAGALMVYDITR 99 (218)
Q Consensus 77 -----~~~~~~~~~~~~d~~i~v~d~~~ 99 (218)
.....-.-++.+|+++.|+|+.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 22223334678999999999763
No 323
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.02 E-value=1.5e-09 Score=83.46 Aligned_cols=81 Identities=22% Similarity=0.152 Sum_probs=55.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhh------
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQER------ 76 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~------ 76 (218)
|+++|.|++|||||+|+|.+........+..+.+.....+.+.+. ...+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987765444444454544555555432 23588999999432
Q ss_pred -hhhhhHhhhccCCEEEEEEECC
Q psy1169 77 -FRAVTRSYYRGAAGALMVYDIT 98 (218)
Q Consensus 77 -~~~~~~~~~~~~d~~i~v~d~~ 98 (218)
.....-..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1111223357899999999874
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.01 E-value=3.9e-10 Score=84.46 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=89.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCC-----------CCCCCCCc---------------eeeeEEEEEEEECC------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQK-----------FMPDCPHT---------------IGVEFGTRIIEVHG------ 61 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~-----------~~~~~~~~---------------~~~~~~~~~~~~~~------ 61 (218)
+.+.|.|.|+||+|||||++.|...- ..++.+.+ .....+.+.+--.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 56799999999999999999985310 00000000 01112222221111
Q ss_pred ------------eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeC
Q psy1169 62 ------------EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129 (218)
Q Consensus 62 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK 129 (218)
..+.+.|++|.|....+ .....-+|.+++|.-..-....|.++.-+.++.. ++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence 13677889998854433 2235669999999998887777766654444433 899999
Q ss_pred CCCCCCccccHHHHHHHHHh-------CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 130 MDLEGSRDVRYDEAKKFAEE-------NDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
.|....... ..+.+..... +..+++.+||.++.|++++++.|.+.....
T Consensus 177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 995433221 1222222221 346899999999999999998887755443
No 325
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=9.5e-09 Score=75.39 Aligned_cols=94 Identities=22% Similarity=0.150 Sum_probs=65.6
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhC
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EEN 150 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 150 (218)
.+..++..+++.+|++++|+|+.+... .|...+... ..+.|+++|+||+|+.... ........+. ...
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhc
Confidence 357788899999999999999988642 122222211 2468999999999996433 2223333333 223
Q ss_pred CC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 151 DL---IFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 151 ~~---~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
+. .++++||+++.|++++++.+.+.+
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 32 589999999999999999988766
No 326
>KOG2655|consensus
Probab=98.95 E-value=4.6e-08 Score=76.95 Aligned_cols=158 Identities=15% Similarity=0.251 Sum_probs=93.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------- 76 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------- 76 (218)
..+.++++|++|.|||||+|.|+...+... ...+.........+.-++-.++++++||||..+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 458999999999999999999876543322 222344444444444467778999999999321
Q ss_pred ------hhhhhHhh-----------hc--cCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 77 ------FRAVTRSY-----------YR--GAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 77 ------~~~~~~~~-----------~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
..+....| +. ++|+++|.+..... -..-++ .+++.+. ..+.+|-|..|+|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHHHHHh----ccccccceeeccccCCHH
Confidence 01111111 22 67889998886653 111222 2233333 356788889999986654
Q ss_pred cccH--HHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 137 DVRY--DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 137 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
++.. ..+.+-+...++.++.-..... +..+....+.+.+.
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~ 216 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSS 216 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhc
Confidence 4322 3355555667777665544433 44444445555554
No 327
>KOG3887|consensus
Probab=98.94 E-value=6.4e-09 Score=76.66 Aligned_cols=164 Identities=18% Similarity=0.249 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE--EECCeEEEEEEeeCcchhhhhh---hhHhhhccCC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII--EVHGEKIKLQIWDTAGQERFRA---VTRSYYRGAA 89 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d 89 (218)
..+|+++|...+||||+.+.......+. .|.-.+...+.. .+.+.-+.+.+||.||+-.+.. -....++++.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 3569999999999999777664433222 122222212111 1223457899999999864322 2456788999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCCCc-cccH-----HHH-HHHHH----hCCCcEEE
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMDLEGSR-DVRY-----DEA-KKFAE----ENDLIFVE 156 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~-~~~~-----~~~-~~~~~----~~~~~~~~ 156 (218)
++|||+|+.+.- .+.+..+...+.... ++++.+-++..|.|-.... .+.. +.. ..++. ...+.++-
T Consensus 104 ALifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L 182 (347)
T KOG3887|consen 104 ALIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL 182 (347)
T ss_pred eEEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence 999999998752 222323222233222 3678889999999964321 1110 111 11221 12334566
Q ss_pred eccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169 157 ASAMTGENVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 157 ~S~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (218)
+|.. .+.+-|+|..+++.+..+++.-
T Consensus 183 TSIy-DHSIfEAFSkvVQkLipqLptL 208 (347)
T KOG3887|consen 183 TSIY-DHSIFEAFSKVVQKLIPQLPTL 208 (347)
T ss_pred eeec-chHHHHHHHHHHHHHhhhchhH
Confidence 6665 4569999999999998876654
No 328
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.92 E-value=9.1e-09 Score=73.04 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=64.8
Q ss_pred hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEE
Q psy1169 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVE 156 (218)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (218)
+..+.++.++++|++|+|+|+.++...+.. .+...+. ..+.|+++|+||+|+...... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 355677888899999999999876443221 2222221 236899999999998533211 1111233345678999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q psy1169 157 ASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 157 ~S~~~~~~i~~~~~~i~~~~~ 177 (218)
+|++++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999988887653
No 329
>KOG1486|consensus
Probab=98.86 E-value=2e-07 Score=69.31 Aligned_cols=89 Identities=25% Similarity=0.189 Sum_probs=60.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-------hhHhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-------VTRSYY 85 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~ 85 (218)
.--.+|+++|.|.+|||||+..+............++.+.-...+.+++.. +++.|.||..+-.+ ......
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEe
Confidence 345799999999999999999997655433333344444444455565554 55779999543222 223356
Q ss_pred ccCCEEEEEEECCChhhH
Q psy1169 86 RGAAGALMVYDITRRSTY 103 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~ 103 (218)
+.+|.+++|+|++..+.-
T Consensus 138 rtaDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQ 155 (364)
T ss_pred ecccEEEEEecCCcchhH
Confidence 789999999999886553
No 330
>KOG1547|consensus
Probab=98.84 E-value=1.4e-07 Score=69.59 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=88.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh------
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER------ 76 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------ 76 (218)
....++|+|+|.+|.|||||+|.+....... ....|.........+.-.+-...+.++||||..+
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 3467999999999999999999997543322 1223344444444444456677889999999321
Q ss_pred ------------hhhh--------hHhhhc--cCCEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 77 ------------FRAV--------TRSYYR--GAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 77 ------------~~~~--------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
+.+. ....+. +++.++|.+..+.. ++..+ ..+++.+.. -+.++-|..|.|-.
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTL 197 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecccc
Confidence 1111 111122 45677777766542 11111 122332322 24467778899853
Q ss_pred C--CccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 134 G--SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 134 ~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
. .+....+.+++-...+++.+++-...+.+.=+..++.-+
T Consensus 198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kv 239 (336)
T KOG1547|consen 198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKV 239 (336)
T ss_pred cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHH
Confidence 2 233333455666666888888766665554444444333
No 331
>PRK12289 GTPase RsgA; Reviewed
Probab=98.83 E-value=2.5e-08 Score=79.47 Aligned_cols=91 Identities=20% Similarity=0.182 Sum_probs=66.6
Q ss_pred hhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEec
Q psy1169 80 VTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS 158 (218)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (218)
+.+..+.++|.+++|+|+.++. .+..+..|+..+.. .++|+++|+||+||...... ....+.....++.++.+|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 4455688999999999998765 45566677655532 57899999999999643221 222233345778899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy1169 159 AMTGENVEQAFLETAKK 175 (218)
Q Consensus 159 ~~~~~~i~~~~~~i~~~ 175 (218)
|+++.|++++++.+...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999887654
No 332
>KOG0464|consensus
Probab=98.79 E-value=8.1e-09 Score=81.75 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=99.0
Q ss_pred ccccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCC--------CCC--------CCCCceeeeEEEEEEEECCeEEE
Q psy1169 2 KTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--------FMP--------DCPHTIGVEFGTRIIEVHGEKIK 65 (218)
Q Consensus 2 ~~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 65 (218)
+++++..+++....-+|.|+..-.+||||.-.|++... ... ......+++.....+.++.+.+.
T Consensus 24 kslhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~r 103 (753)
T KOG0464|consen 24 KSLHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHR 103 (753)
T ss_pred hhccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccce
Confidence 45556666777788899999999999999999997421 110 00112345555666677778888
Q ss_pred EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
+.++||||+..|.-....+++-.|+++.|||.+....-+.+..|.+ ..+.++|-..++||+|...
T Consensus 104 inlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 104 INLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 9999999999999999999999999999999999877777766653 3345799999999999744
No 333
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.79 E-value=4.2e-08 Score=76.46 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=66.9
Q ss_pred HhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 82 RSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+..... ......+....+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999987 88888888765553 4689999999999965421 112233334467889999999
Q ss_pred CCCCHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAK 174 (218)
Q Consensus 161 ~~~~i~~~~~~i~~ 174 (218)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999998877654
No 334
>KOG2486|consensus
Probab=98.78 E-value=2.1e-08 Score=75.40 Aligned_cols=159 Identities=17% Similarity=0.090 Sum_probs=93.8
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeEEEEEEEECCeEEEEEEeeCcc----------hhhh
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERF 77 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~ 77 (218)
..+....++++++|.+++|||+|++.+........... ..+.+.....+.+. ..+.++|.|| ..++
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchH
Confidence 44567789999999999999999999987655443333 33333333333322 3566789999 2245
Q ss_pred hhhhHhhhccCC---EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc----ccHHHHHH-----
Q psy1169 78 RAVTRSYYRGAA---GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD----VRYDEAKK----- 145 (218)
Q Consensus 78 ~~~~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~----- 145 (218)
..+...|+..-+ -+.+++|++-+-.--+.. .+..+. ..++|..+|+||+|...... .....+..
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLG---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHh---hcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 555666654332 235566666542211111 122222 35899999999999742211 00011111
Q ss_pred --HHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 146 --FAEENDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 146 --~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
.+-...++.+.+|+.++.|+++++-.+.+
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 11123456778999999999988766654
No 335
>PRK12288 GTPase RsgA; Reviewed
Probab=98.76 E-value=9.8e-08 Score=76.08 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=66.8
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAEENDLIFVEASAMTGE 163 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (218)
..++|.+++|++.....++..+..|+..+.. .++|+++|+||+|+...... ............+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4579999999999988999999999765542 46899999999999654321 1122223334567899999999999
Q ss_pred CHHHHHHHHHHH
Q psy1169 164 NVEQAFLETAKK 175 (218)
Q Consensus 164 ~i~~~~~~i~~~ 175 (218)
|++++++.+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999888653
No 336
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.75 E-value=2.5e-08 Score=69.57 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (218)
+++++|.+|+|||||+|++++........ ..+.+.....+.+++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876543211 122222233344433 4689999995
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.74 E-value=5.9e-08 Score=76.05 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=63.2
Q ss_pred hhccCCEEEEEEECCChhhHHH-HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 84 YYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
.+.++|.+++|+|+.++..+.. +..|+..+.. .++|+++|+||+|+...... .....+.....+.+++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988765444 4666655443 57899999999999633221 22334445556788999999999
Q ss_pred CCHHHHHHHHH
Q psy1169 163 ENVEQAFLETA 173 (218)
Q Consensus 163 ~~i~~~~~~i~ 173 (218)
.|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999987664
No 338
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.70 E-value=1.5e-07 Score=75.76 Aligned_cols=95 Identities=24% Similarity=0.289 Sum_probs=68.7
Q ss_pred hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH----HHHh
Q psy1169 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK----FAEE 149 (218)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~~ 149 (218)
.+.|..+...+.+.++++++|+|+.+... .|...+.... .+.|+++|+||+|+... ....+...+ ++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 45788888889999999999999977542 2444444333 25789999999999643 232334333 3455
Q ss_pred CCC---cEEEeccCCCCCHHHHHHHHHHH
Q psy1169 150 NDL---IFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 150 ~~~---~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
.++ .++.+||+++.|++++++.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 665 38999999999999999888654
No 339
>KOG1954|consensus
Probab=98.70 E-value=1.9e-07 Score=73.02 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=82.4
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeEEEEEEE------ECCeE-----------------
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIE------VHGEK----------------- 63 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~----------------- 63 (218)
..+......=|+++|.-..||||||+.|+...++..... ..+.++....+. ++|..
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 344455666799999999999999999999888754322 112222222111 11110
Q ss_pred ----------------EEEEEeeCcchh-----------hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhh
Q psy1169 64 ----------------IKLQIWDTAGQE-----------RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL 116 (218)
Q Consensus 64 ----------------~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 116 (218)
-.+.|+||||.- .|.....=|..++|.+|++||....+--+++...+..+..
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG- 209 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG- 209 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-
Confidence 256799999932 2445666688999999999998765544455554444443
Q ss_pred cCCCCeEEEEeeCCCCCCCcc
Q psy1169 117 TNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 117 ~~~~~piivv~nK~Dl~~~~~ 137 (218)
..-.+-||+||.|+.+..+
T Consensus 210 --~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 210 --HEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred --CcceeEEEeccccccCHHH
Confidence 4455788999999865543
No 340
>KOG0467|consensus
Probab=98.64 E-value=1.7e-07 Score=79.27 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=86.0
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCC------------CC--CCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF------------MP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (218)
+.+.+..-+++++.....|||||+..|+...- .. +...+.+++.....+..-...+.+.++|+||+
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 45667888999999999999999999974321 10 11123344444444444456788899999999
Q ss_pred hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131 (218)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 131 (218)
.+|.+......+-+|++++++|+...-.-+...-..+.+. .+...++|+||+|
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence 9999999999999999999999988755444332222222 3455789999999
No 341
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.62 E-value=1.9e-07 Score=74.35 Aligned_cols=84 Identities=18% Similarity=0.060 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhh---
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQER--- 76 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--- 76 (218)
+++.|+|.|++|||||++.|..... .....+..+.+.....+.+++. ...+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999988776 4443344444444555555442 23678899999543
Q ss_pred ----hhhhhHhhhccCCEEEEEEECCC
Q psy1169 77 ----FRAVTRSYYRGAAGALMVYDITR 99 (218)
Q Consensus 77 ----~~~~~~~~~~~~d~~i~v~d~~~ 99 (218)
.....-..++.+|++++|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 22233445789999999999853
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.62 E-value=1.2e-07 Score=68.37 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=39.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (218)
+..++++++|.+|+|||||++++.+..+... ....+.+.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4558999999999999999999998765322 2222333334444443 35679999994
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=1.7e-07 Score=66.55 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=35.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999875542221 1222222222222221 356899998
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.59 E-value=1.6e-07 Score=67.61 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=38.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
...++++|+|.+++|||||+|+|.+....... +..+.+.....+..+ ..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence 34589999999999999999999976543221 122333323333332 2577999998
No 345
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.57 E-value=1.4e-06 Score=68.66 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=92.5
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------CceeeeEEEEEEEECC--------------
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP--------------HTIGVEFGTRIIEVHG-------------- 61 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-------------- 61 (218)
...+..+.+.+.|....|||||.-.|..+....... ...+.+.+...+-+++
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 334667899999999999999987775443222111 1112222222222211
Q ss_pred -------eEEEEEEeeCcchhhhhhh--hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169 62 -------EKIKLQIWDTAGQERFRAV--TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132 (218)
Q Consensus 62 -------~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 132 (218)
.+--+.|+|+.|++.|... ...+-.+.|..++++.+++..+--.-+. +.....-..|++++.||+|+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH----Lgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH----LGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh----hhhhhhhcCCEEEEEEeccc
Confidence 1235569999999998763 3334468899999999999755322222 12222247999999999999
Q ss_pred CCCcccc--HHHHHHH----------------------H-HhC--CCcEEEeccCCCCCHHHH
Q psy1169 133 EGSRDVR--YDEAKKF----------------------A-EEN--DLIFVEASAMTGENVEQA 168 (218)
Q Consensus 133 ~~~~~~~--~~~~~~~----------------------~-~~~--~~~~~~~S~~~~~~i~~~ 168 (218)
..+.... .+++..+ + ... =.|+|.+|+.+++|++-+
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 6442111 0111111 1 111 247999999999999643
No 346
>KOG1491|consensus
Probab=98.55 E-value=3.7e-07 Score=70.67 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=64.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC---------------eEEEEEEeeCcchhh-
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG---------------EKIKLQIWDTAGQER- 76 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~- 76 (218)
.+.+++.|+|.|++|||||+|.|..........|..+++.....+.+.. ....+.++|++|...
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4668999999999999999999999888877777777766555554432 245888999999432
Q ss_pred ------hhhhhHhhhccCCEEEEEEECCC
Q psy1169 77 ------FRAVTRSYYRGAAGALMVYDITR 99 (218)
Q Consensus 77 ------~~~~~~~~~~~~d~~i~v~d~~~ 99 (218)
.....-..++.+|+++-|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22233345678999999888654
No 347
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.55 E-value=2.8e-07 Score=65.34 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=37.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
...+++++|.+++|||||++++.+... ....++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999986542 22333444433233222222 578999998
No 348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.54 E-value=8.8e-07 Score=81.22 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC----CCc--eeeeEEEEEEEECCeEEEEEEeeCcchh--------hhhhhhH
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDC----PHT--IGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTR 82 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~ 82 (218)
=.+|+|++|+||||++.+- +..++-.. ..+ .+.+... .+.+.+ +-.++|++|.. .....|.
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-DWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-ceEecC---CEEEEcCCCccccCCCcccccHHHHH
Confidence 3689999999999999877 33332110 000 0000000 111111 34488999932 1112233
Q ss_pred hhh---------ccCCEEEEEEECCChhh---------HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 83 SYY---------RGAAGALMVYDITRRST---------YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 83 ~~~---------~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
.++ +..+++|+++|+.+--. -..++..+.++....+...||+|++||+|+...
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 332 35799999999876321 134455666777777789999999999998644
No 349
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.9e-06 Score=70.09 Aligned_cols=141 Identities=14% Similarity=0.142 Sum_probs=83.2
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
...-+..+=++|+||+|+||||||+.|...-.........+ ..+ .+.+..-.+++.++|. ...++. ...+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl~~mi-DvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DLHQMI-DVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HHHHHH-hHHHhh
Confidence 33445667788999999999999998865321111110100 111 2355666788899983 333332 234568
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccccHHHHHH------HHHh-CCCcEEEeccC
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKK------FAEE-NDLIFVEASAM 160 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~------~~~~-~~~~~~~~S~~ 160 (218)
|.+++++|.+-.-..+.+ +++..+..+ +.| ++-|+|+.|+....... ..++. |... .++.+|.+|..
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stL-r~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTL-RSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHH-HHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 999999999876444333 344434433 455 77789999996543322 22222 2222 46778888876
Q ss_pred CC
Q psy1169 161 TG 162 (218)
Q Consensus 161 ~~ 162 (218)
.+
T Consensus 210 ~n 211 (1077)
T COG5192 210 EN 211 (1077)
T ss_pred cc
Confidence 54
No 350
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.53 E-value=7.3e-07 Score=63.36 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=37.7
Q ss_pred EEEEEEeeCcchhhhhhhhHh--------hhccCCEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169 63 KIKLQIWDTAGQERFRAVTRS--------YYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piivv~nK~Dl 132 (218)
..+..++|++|......+... ..-.++.+++++|+..-... .....+..++.... ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 346678999996543333222 23357889999997653321 12223344444322 778999996
No 351
>KOG0463|consensus
Probab=98.52 E-value=3.5e-07 Score=71.81 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=87.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CCCCc-------eeeeEEEEEEE------------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP----------------DCPHT-------IGVEFGTRIIE------------ 58 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~----------------~~~~~-------~~~~~~~~~~~------------ 58 (218)
..++|+|+|...+|||||+-.|.+++... +...+ .+++..-..+.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 45899999999999999997665443221 11111 11111111111
Q ss_pred --ECCeEEEEEEeeCcchhhhhhhhH--hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 59 --VHGEKIKLQIWDTAGQERFRAVTR--SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 59 --~~~~~~~~~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
.++..-.++|+|.+|++.|....- ..-+-.|..++++-++-.--- ..++ .+.....-.+|+++|.+|+|+..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiG-mTKE---HLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIG-MTKE---HLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccccee-ccHH---hhhhhhhhcCcEEEEEEeeccCc
Confidence 112223567999999998876322 222345777777776653110 0011 11222224799999999999965
Q ss_pred CccccHHHHH---HH--------------------------HHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 135 SRDVRYDEAK---KF--------------------------AEENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 135 ~~~~~~~~~~---~~--------------------------~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
...+. +-++ .+ ..+.-+|+|.+|..+|.|++ ++..+++.+
T Consensus 288 ANiLq-EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll 356 (641)
T KOG0463|consen 288 ANILQ-ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL 356 (641)
T ss_pred HHHHH-HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence 54321 2111 11 12223568999999999996 344444444
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.51 E-value=2.4e-07 Score=67.99 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=35.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
..+++++|.+|+|||||+|+|+...... ......+++.....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3589999999999999999998754311 1111222333333333332 468999998
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.51 E-value=7.2e-07 Score=63.34 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=57.5
Q ss_pred hhhccCCEEEEEEECCChhh--HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 83 SYYRGAAGALMVYDITRRST--YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
..++.+|++++|+|+.++.. ...+..++. . ...+.|+++|+||+|+...... ......+........+.+||+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 35678999999999998633 223333332 2 2345899999999999643221 112222222232335789999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAKKI 176 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (218)
.+.|++++++.+.+..
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999988887654
No 354
>KOG0448|consensus
Probab=98.50 E-value=5.6e-06 Score=69.65 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=88.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCceee----------------------------------------
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGV---------------------------------------- 50 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~~~~---------------------------------------- 50 (218)
.+...||+|.|...+||||++|.++....-++ ..+++.+
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 35568999999999999999999986543221 1111000
Q ss_pred --eEEEEEEEECCe-----EEEEEEeeCcchh---hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCC
Q psy1169 51 --EFGTRIIEVHGE-----KIKLQIWDTAGQE---RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN 120 (218)
Q Consensus 51 --~~~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 120 (218)
......+.++.. .-.+.++|.||.+ ...+-...+...+|++|||..+.+..+..+. .++..... ..
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~K 261 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EK 261 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cC
Confidence 001111112211 1145688999954 4556677788899999999999887664333 44444443 23
Q ss_pred CeEEEEeeCCCCCCCccccHHHHHHHHHhCC--------CcEEEeccC
Q psy1169 121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--------LIFVEASAM 160 (218)
Q Consensus 121 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~S~~ 160 (218)
..|+|+.||+|.....+.-.+++..-.+... -.+++||++
T Consensus 262 pniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 262 PNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred CcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 4477788999986665444444444433221 237888865
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.49 E-value=8.8e-07 Score=62.77 Aligned_cols=85 Identities=16% Similarity=0.058 Sum_probs=55.4
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
|++|+|+|+.++.+.... ++.. ......+.|+++|+||+|+.....+ .+....+.......++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 689999999887654322 2221 1222357899999999999543211 01112232233456899999999999999
Q ss_pred HHHHHHHHH
Q psy1169 169 FLETAKKIY 177 (218)
Q Consensus 169 ~~~i~~~~~ 177 (218)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 998877653
No 356
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.48 E-value=2.9e-05 Score=54.22 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=78.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCc-ch-----------------
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA-GQ----------------- 74 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~----------------- 74 (218)
...+||.|.|+||+||||++.++.+.--... ..-.-+.+..+.-++...-|.|+|+. |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 4678999999999999999998864221111 11112224444456666777777776 31
Q ss_pred ----hhhhh----hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHH
Q psy1169 75 ----ERFRA----VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF 146 (218)
Q Consensus 75 ----~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~ 146 (218)
+.+.. .....++.+|++ ++|--.+-.+ ....+...+....+.+.|++.++.+.+- + -.++.+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr--~-----P~v~~i 149 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR--H-----PLVQRI 149 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC--C-----hHHHHh
Confidence 11221 222334445654 4454333221 1133445555555678888888877653 1 122222
Q ss_pred HHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 147 ~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
-....+ ++. .+..|-+.+++.+++.+
T Consensus 150 k~~~~v-~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGV-YVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCE-EEE---EccchhhHHHHHHHHHh
Confidence 222333 333 44455557777776655
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.47 E-value=5.3e-07 Score=70.02 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=38.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (218)
...++++|+|.+|+|||||+|+|.+....... ...+.+.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999876533221 1222222233343332 4679999996
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.45 E-value=8.1e-07 Score=69.35 Aligned_cols=59 Identities=27% Similarity=0.371 Sum_probs=39.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
...++++|+|.+|+|||||+|+|.+...... ....+.+.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999998654322 11223332233333332 46799999964
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.44 E-value=4.2e-07 Score=64.12 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMP------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (218)
--++++|++|||||||+|.|+...... ........+.....+..+.. ..++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 358999999999999999998753211 11111111112333333332 2478999976544
No 360
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.44 E-value=1.9e-06 Score=62.09 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=62.9
Q ss_pred Ccchh-hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169 71 TAGQE-RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE 149 (218)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (218)
.||+- +........+..+|++++|+|+.++...... .+...+ .+.|+++|+||+|+...... ....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHh
Confidence 35543 2333456678899999999999876442211 122111 24789999999999533211 111122233
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 150 NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
....++.+|++++.|++++.+.+.+.+
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 345688999999999999998888765
No 361
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.41 E-value=6.2e-07 Score=70.95 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=41.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
..++++|+|.+++|||||||+|.+.... ...+..+.+.....+..... +.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 4578999999999999999999987652 22233355544555544433 6789999954
No 362
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.40 E-value=1.5e-06 Score=60.62 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=53.0
Q ss_pred hHhhhccCCEEEEEEECCChhhHH--HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEec
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS 158 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (218)
....+..+|++++|+|+.++.+.+ .+..|+... . .+.|+++++||+|+..... .....++....+..++++|
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 345678899999999998876543 344444322 1 4689999999999854332 1233444555567889999
Q ss_pred cCCCCC
Q psy1169 159 AMTGEN 164 (218)
Q Consensus 159 ~~~~~~ 164 (218)
+.++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 997754
No 363
>KOG1143|consensus
Probab=98.38 E-value=1.4e-06 Score=68.55 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=89.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------------------CceeeeEEEEEEEEC----------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-----------------------HTIGVEFGTRIIEVH---------- 60 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~---------- 60 (218)
-.++++|+|...+|||||+-.|..+....... ...+++.....+.+.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 35899999999999999998776543322111 112222222222221
Q ss_pred CeEEEEEEeeCcchhhhhhhhHhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 61 GEKIKLQIWDTAGQERFRAVTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
...--+.++|.+|+..|.......+. ..|..++++++...-.+..-+. +.....-++|++++.+|+|+.....+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH----Lgl~~AL~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH----LGLIAALNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH----HHHHHHhCCCeEEEEEeeccccchhH
Confidence 11235679999999888764433332 3577888888887655432222 12222247999999999999654211
Q ss_pred ------------------------cHHHH----HHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 139 ------------------------RYDEA----KKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 139 ------------------------~~~~~----~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
..+++ ++++..+-.|+|-+|...|.+++-
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence 11122 222223345789999999999864
No 364
>KOG0460|consensus
Probab=98.38 E-value=4.3e-06 Score=64.98 Aligned_cols=144 Identities=18% Similarity=0.154 Sum_probs=92.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC----------CCCC----CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ----------KFMP----DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (218)
..-.+|.-+|...-|||||-..+..- .|.+ ......+++...-++.++-..-.+-=.|+||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 34588999999999999998877521 1110 011234455555666665444455567999999887
Q ss_pred hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhCC---
Q psy1169 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEND--- 151 (218)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 151 (218)
..-..-....|+.|+|+.++|..-.|.-+.++. ...-+++ +++++||.|+.++.+.. .-+++++...++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLL----ArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLL----ARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHHH----HHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 655555667899999999999765554444331 1222344 78889999998554322 234566666654
Q ss_pred --CcEEEeccC
Q psy1169 152 --LIFVEASAM 160 (218)
Q Consensus 152 --~~~~~~S~~ 160 (218)
.|++.-||+
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 467776654
No 365
>KOG0447|consensus
Probab=98.37 E-value=3e-05 Score=64.09 Aligned_cols=135 Identities=14% Similarity=0.259 Sum_probs=83.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCC------------------------------c-------------
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPH------------------------------T------------- 47 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~------------------------------~------------- 47 (218)
.++..+|+|+|+..+||||.+..+..-...+ .... |
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 3778999999999999999999885322111 0000 0
Q ss_pred ----------eeeeEEEEEEEECCeE-EEEEEeeCcch-------------hhhhhhhHhhhccCCEEEEEEECCChhhH
Q psy1169 48 ----------IGVEFGTRIIEVHGEK-IKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRRSTY 103 (218)
Q Consensus 48 ----------~~~~~~~~~~~~~~~~-~~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 103 (218)
.++...+..+.+.|.. ....++|.||. +...++...|..+.+++|+|+--..-...
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 0111112222333322 36678999993 23455788899999999999754332221
Q ss_pred -HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169 104 -NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE 149 (218)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (218)
..+..+...+. ..+...|+|+||.|+.+..-.+...+++....
T Consensus 465 RSnVTDLVsq~D---P~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 465 RSIVTDLVSQMD---PHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred hhhHHHHHHhcC---CCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 12233333333 24667899999999988766666777776654
No 366
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.36 E-value=9.5e-06 Score=61.04 Aligned_cols=89 Identities=16% Similarity=0.055 Sum_probs=53.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCceeeeEEEEEEEEC---CeEEEEEEeeCcchhhhh------hhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVH---GEKIKLQIWDTAGQERFR------AVT 81 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~------~~~ 81 (218)
.+..-|.|+|++++|||+|+|.|++. .+...... ...+...+....+ +....+.++||+|..... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-CCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 45677999999999999999999987 55432211 1111112222111 235688999999965321 112
Q ss_pred Hhhhcc--CCEEEEEEECCChhh
Q psy1169 82 RSYYRG--AAGALMVYDITRRST 102 (218)
Q Consensus 82 ~~~~~~--~d~~i~v~d~~~~~s 102 (218)
...+.. ++.+||..+....+.
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHH
Confidence 222333 788888777665433
No 367
>KOG0465|consensus
Probab=98.35 E-value=1.6e-06 Score=71.97 Aligned_cols=122 Identities=19% Similarity=0.161 Sum_probs=85.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCC-----CCCC-----------CceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-----PDCP-----------HTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
....-+|.++-.-.+||||+-++.+...-. .... ...+++.......+....+.+.|+||||+.
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 345567888889999999999998743211 1000 011222222223334457889999999999
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
.|.-.....++-.|+.+++++......-+...-|.+.-. .++|-+.++||.|......
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDRMGASP 173 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhhcCCCh
Confidence 998888889999999999999988766566666654333 5899999999999865543
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=98.33 E-value=1.1e-06 Score=70.05 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=34.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCC------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQKFMP------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (218)
++|+|.+|||||||+|+|+...... .......++.....+.++++. .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999998654221 111111112222233333322 388999976654
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.33 E-value=6.5e-06 Score=65.02 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=55.0
Q ss_pred eEEEEEEeeCcchhhh--------hhhhHh---h-hccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEee
Q psy1169 62 EKIKLQIWDTAGQERF--------RAVTRS---Y-YRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGN 128 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~--------~~~~~~---~-~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~n 128 (218)
..+.+.|+||+|.... ..+... . -...+..++|+|++... .+..+..+... -.+.-+|+|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~-------~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEA-------VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhh-------CCCCEEEEE
Confidence 3467889999995421 111111 1 12467789999998642 22322222211 123478899
Q ss_pred CCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 129 KMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
|.|....- -.+...+...++|+..++ +|.+++++-
T Consensus 268 KlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 99954322 334455566799988888 666676654
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.31 E-value=1.8e-06 Score=61.17 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=36.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
....+++++|.+|+|||||+|.+++..... ...+..+... ..+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 456889999999999999999998755322 2222222221 222222 3577899998
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.30 E-value=7.3e-06 Score=63.68 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=65.3
Q ss_pred Ccchh-hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169 71 TAGQE-RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE 149 (218)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (218)
.|||. .........+..+|++|+|+|+..+.+.... .+.+.+ .+.|+++|+||+|+...... ....++...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHH
Confidence 46654 2333456678899999999999876443221 111111 25789999999998533211 111122233
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 150 NDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
.+.+++.+|++++.|++++.+.+.+.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 455789999999999999998887776543
No 372
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=98.29 E-value=6.9e-05 Score=53.03 Aligned_cols=152 Identities=9% Similarity=0.073 Sum_probs=106.5
Q ss_pred CccccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169 1 MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (218)
|.-..+..+.|..+...|+++|..+.++..|.+.++...- + +..+...-.. + -.|. +
T Consensus 1 m~~L~p~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~l~Vh~a~s------L-PLp~--e---- 57 (176)
T PF11111_consen 1 MSVLRPFDKLPELNTATILLVGTEEALLQQLAEAMLEEDK------E----FKLKVHLAKS------L-PLPS--E---- 57 (176)
T ss_pred CCcccccccCCCcceeEEEEecccHHHHHHHHHHHHhhcc------c----eeEEEEEecc------C-CCcc--c----
Confidence 5667788888999999999999999999999999976221 0 0011110000 0 0111 1
Q ss_pred hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
....-.+.|.++|++|.....+++.++.-+..+....=. -.+.++++-....+...+...++.+++..++.|++.+.-.
T Consensus 58 ~~~lRprIDlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le 136 (176)
T PF11111_consen 58 NNNLRPRIDLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLE 136 (176)
T ss_pred ccCCCceeEEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecc
Confidence 111235689999999999999999998877666543312 2356666666666667788899999999999999998888
Q ss_pred CCCCHHHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAKKI 176 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (218)
...+...+-..+++.+
T Consensus 137 ~~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 137 NEEGRTSLAQRLLRML 152 (176)
T ss_pred cchHHHHHHHHHHHHH
Confidence 8877776666666554
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.29 E-value=1.9e-05 Score=61.08 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=54.8
Q ss_pred EEEEEEeeCcchhhhhhh----hH---hhh-----ccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeC
Q psy1169 63 KIKLQIWDTAGQERFRAV----TR---SYY-----RGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNK 129 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~----~~---~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK 129 (218)
.+.+.|+||+|....... .. ... ...|..++|+|+... +.+..+..+.+.+ .+.-+|+||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-------~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-------GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-------CCCEEEEEc
Confidence 467889999996532221 11 111 237889999999754 2233332222211 135788999
Q ss_pred CCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 130 MDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
.|..... -.+..+....++|+.+++ +|.+++++-
T Consensus 227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9974432 233444445678988887 566666554
No 374
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.26 E-value=3e-05 Score=61.17 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=57.1
Q ss_pred EEEEEeeCcchhhhhhhhHhhhc--------cCCEEEEEEECCChhhHHH-H-HHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 64 IKLQIWDTAGQERFRAVTRSYYR--------GAAGALMVYDITRRSTYNH-L-SSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~-~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
+...++++.|..........+.. ..|++|-|+|+..-..... . ..+..++.... +|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCC
Confidence 45568888886655443333322 4577899999987544222 2 22334444322 8999999998
Q ss_pred CCccccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHH
Q psy1169 134 GSRDVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 134 ~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~ 169 (218)
+... .+..++..+. ..++++.++. .+....+++
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 7664 2344444444 5667888887 333444333
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=98.24 E-value=9e-06 Score=64.52 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=54.0
Q ss_pred EEEEEeeCcchhhhhh----hhHhhh--ccCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 64 IKLQIWDTAGQERFRA----VTRSYY--RGAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
+.+.|+||+|...... ....+. -..|..++|+|+..... .+.+..+.. .. .+--+++||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~----~~---~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE----AV---GIDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh----cC---CCCEEEEeeecCCCCc
Confidence 5688999999643111 111221 25688899999876432 222222221 11 1246889999975332
Q ss_pred cccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
-.+..++...++|+..++ +|.+++++.
T Consensus 296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 ----GAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ----cHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 233344445688988887 677787665
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=98.23 E-value=1.5e-05 Score=64.33 Aligned_cols=93 Identities=26% Similarity=0.330 Sum_probs=60.2
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHH----HHhCC
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF----AEEND 151 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 151 (218)
.|...........+.+++|+|+.+... .|...+.... .+.|+++|+||.|+... ....+.+..+ +...+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence 455544444333348899999988542 2333444333 26789999999999643 2222333333 44455
Q ss_pred C---cEEEeccCCCCCHHHHHHHHHHH
Q psy1169 152 L---IFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 152 ~---~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
+ .++.+||+++.|++++++.+.+.
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5 47899999999999999888654
No 377
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.22 E-value=9.2e-05 Score=59.64 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=80.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-----------------CCCCCCC----ceeeeEE---EEEEEE-CCeEEEEEEe
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQK-----------------FMPDCPH----TIGVEFG---TRIIEV-HGEKIKLQIW 69 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~-----------------~~~~~~~----~~~~~~~---~~~~~~-~~~~~~~~i~ 69 (218)
-+=+.|+||..+||||||+||...- .+.+... |+...+- ...+.+ ++..+.+.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 4668999999999999999996421 1111111 1111111 112223 4667889999
Q ss_pred eCcchh-------------h------------hhhhhHh-----hhc-cCCEEEEEEECCC----hhhHHHHHHHHHHHh
Q psy1169 70 DTAGQE-------------R------------FRAVTRS-----YYR-GAAGALMVYDITR----RSTYNHLSSWLTDTK 114 (218)
Q Consensus 70 D~~G~~-------------~------------~~~~~~~-----~~~-~~d~~i~v~d~~~----~~s~~~~~~~~~~~~ 114 (218)
|+.|.. + |.....- .-. ..-++++.-|-+= ++.+..++. +.+.
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe--rvI~ 174 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEE--RVIE 174 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHH--HHHH
Confidence 998810 0 1110000 011 2234555555432 344444433 1233
Q ss_pred hhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169 115 NLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT 161 (218)
Q Consensus 115 ~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (218)
.+..-+.|+++++|-.+- ..+-..+.+.++...++++++++++.+
T Consensus 175 ELk~igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHHHhCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 333357999999998874 233344667777888999998888754
No 378
>KOG0466|consensus
Probab=98.22 E-value=1.6e-06 Score=66.36 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=96.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCceee--eEEEE-EEE--------------------------E
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPHTIGV--EFGTR-IIE--------------------------V 59 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~---~~~~~~~~~~~--~~~~~-~~~--------------------------~ 59 (218)
++-.++|.-+|....||||++..+.+-. |..+..+.++. -|... .+. .
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 5678999999999999999998875421 11111111111 00000 000 0
Q ss_pred CCe------EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 60 HGE------KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 60 ~~~------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
.+. .-.+.|+|+||++-.-...-+-..-.|++++++..+..-...+..+-+-.+... .=..++++-||.|+.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli 192 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLI 192 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhh
Confidence 010 125669999999865443333334467777777766532111111111112111 124478899999997
Q ss_pred CCccc--cHHHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 134 GSRDV--RYDEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 134 ~~~~~--~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
...+. ..+.+..|.+. .+.|++++||.-..|++.+.+.|++.+
T Consensus 193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 54332 23556667665 467899999999999999998888877
No 379
>PRK01889 GTPase RsgA; Reviewed
Probab=98.21 E-value=1.1e-05 Score=64.78 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=58.3
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
..++|.+++|+++...-....+..++..+.. .+++.++|+||+||........+....+ ..+.+++.+|++++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 5789999999999765555556666554443 4577789999999965421111222222 3567899999999999
Q ss_pred HHHHHHHHH
Q psy1169 165 VEQAFLETA 173 (218)
Q Consensus 165 i~~~~~~i~ 173 (218)
++++..++.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 998887664
No 380
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.20 E-value=2.9e-06 Score=64.69 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++++|++|||||||+|+|+...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68999999999999999998653
No 381
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=9.3e-06 Score=73.26 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=64.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh--------hhhhhhHhh---
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTRSY--- 84 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~--- 84 (218)
.+|||++|+||||++..- +..|+ ............+..+.. .-.-.-.++||.|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 589999999999988543 11111 111100000000111111 011244578998832 111223322
Q ss_pred ------hccCCEEEEEEECCChhh---------HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 85 ------YRGAAGALMVYDITRRST---------YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 85 ------~~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
.+..+++|+.+|+.+.-+ -..+..-++++........|+++++||.|+...
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 356799999999877322 122333455666666678999999999998654
No 382
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=2.7e-06 Score=65.56 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC------CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ------KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (218)
-.+++|.+|||||||+|+|... ..+........++.....+..+++. .|+||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 4689999999999999999752 2222222222233334455554222 377999976544
No 383
>KOG4273|consensus
Probab=98.17 E-value=2.8e-05 Score=58.12 Aligned_cols=111 Identities=24% Similarity=0.351 Sum_probs=67.6
Q ss_pred eEEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeE----EEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 16 FKYIIIGDMGV--GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK----IKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 16 ~ki~v~G~~g~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
.-++|+|-+|+ ||-+|+.+|....+..+..+.....+..+.+ +.+. +.+.|.-.. +++..-.........
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwti--d~kyysadi~lcishic--de~~lpn~~~a~pl~ 80 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTI--DNKYYSADINLCISHIC--DEKFLPNAEIAEPLQ 80 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEe--cceeeecceeEEeeccc--chhccCCccccccee
Confidence 45789999999 9999999998877766554444444433333 3222 233322221 111111222334567
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 132 (218)
+++++||++....+..+..|+....... --.++.++||.|.
T Consensus 81 a~vmvfdlse~s~l~alqdwl~htdins--fdillcignkvdr 121 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDR 121 (418)
T ss_pred eEEEEEeccchhhhHHHHhhcccccccc--chhheeccccccc
Confidence 8899999999999999999975332211 1124566899985
No 384
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.16 E-value=1.6e-05 Score=62.08 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=65.8
Q ss_pred Ccchhh-hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169 71 TAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE 149 (218)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (218)
.|||.. -.......+..+|++|+|+|+.++.+... .++.... .+.|+++|+||+|+..... .....++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 577652 23345667889999999999987644322 1111111 2578999999999853211 1122222233
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 150 NDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
.+.+++.+|+.++.|++++++.+.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 456789999999999999998887776543
No 385
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.16 E-value=3.2e-06 Score=61.85 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=34.0
Q ss_pred ccccHHHHHHHHHhCCCcEE--EeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 136 RDVRYDEAKKFAEENDLIFV--EASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~--~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
.......+++++....+.+| +|||++.+-+.++++.+.+.+.+-
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 33444667778877777777 599999999999999888877553
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.15 E-value=4.1e-06 Score=66.96 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~ 39 (218)
++|+|++|||||||||.|+...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999998643
No 387
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.15 E-value=8.9e-06 Score=58.30 Aligned_cols=135 Identities=21% Similarity=0.295 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeC-cch---------------------
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT-AGQ--------------------- 74 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 74 (218)
||++.|++|+|||||+++++..--... .+..+ +.+..+.-++..+-|.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Cccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999874321100 01111 22333333455555666665 221
Q ss_pred -hhhhhh----hHhhhccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCC-CCCCCccccHHHHHHHH
Q psy1169 75 -ERFRAV----TRSYYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKM-DLEGSRDVRYDEAKKFA 147 (218)
Q Consensus 75 -~~~~~~----~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~-Dl~~~~~~~~~~~~~~~ 147 (218)
+.|... ....+..+| ++++|--.+ |-. ...|.+.+......+.|++.++.+. +. ....++.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~--~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK--SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC---CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc--CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence 112211 111123344 777774332 211 1234444444444678888888766 32 2345566
Q ss_pred HhCCCcEEEeccCCCCCHH
Q psy1169 148 EENDLIFVEASAMTGENVE 166 (218)
Q Consensus 148 ~~~~~~~~~~S~~~~~~i~ 166 (218)
...+..+++++..+.+.+.
T Consensus 146 ~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp TTTTSEEEE--TTTCCCHH
T ss_pred hCCCcEEEEeChhHHhhHh
Confidence 6778889999887776553
No 388
>KOG0085|consensus
Probab=98.13 E-value=7e-06 Score=60.59 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=73.9
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh----------HHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST----------YNHLSSWLTDTKNLT-NPNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~piivv~nK~ 130 (218)
..+.+.+.|.+|+..-+..|.+++.++..++|++.++.-.. .++-.-++..+..+. =.+.++|+++||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 45567788999988777778888888877777666544211 111122222222221 0378899999999
Q ss_pred CCCCC----------------ccccHHHHHHHHHh----CC------CcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 131 DLEGS----------------RDVRYDEAKKFAEE----ND------LIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 131 Dl~~~----------------~~~~~~~~~~~~~~----~~------~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
|+.+. ...+.+.++.|... .+ +.-..+.|.+..|+.-+|..+-+.+++.
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 98432 12333445555432 11 1234688888999999999988888775
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.10 E-value=6.3e-05 Score=61.48 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~ 36 (218)
.--|+++|++|+||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998885
No 390
>KOG0099|consensus
Probab=98.09 E-value=1.8e-05 Score=59.49 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=74.6
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh-------hhHHHHH---HHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR-------STYNHLS---SWLTDTKNLT-NPNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~---~~~~~~~~~~-~~~~piivv~nK~ 130 (218)
..+.|+.+|.+|+..-+..|...+..+.++|||+..+.- .+-+.+. .+++.+.... -..+.+|+++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 346789999999998888999999999999999988762 1222222 2333332211 1246689999999
Q ss_pred CCCCCc------------------------------cccHHHHHHHHHh-------------CCCcEEEeccCCCCCHHH
Q psy1169 131 DLEGSR------------------------------DVRYDEAKKFAEE-------------NDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 131 Dl~~~~------------------------------~~~~~~~~~~~~~-------------~~~~~~~~S~~~~~~i~~ 167 (218)
|+.... ......++-+.+. +-+.+.++.|.+..++..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 972110 0000111112111 123356788899999999
Q ss_pred HHHHHHHHHHHh
Q psy1169 168 AFLETAKKIYQN 179 (218)
Q Consensus 168 ~~~~i~~~~~~~ 179 (218)
+|+..-+.|...
T Consensus 360 VFnDcrdiIqr~ 371 (379)
T KOG0099|consen 360 VFNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHHH
Confidence 998877766553
No 391
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.09 E-value=8.8e-06 Score=65.57 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMP----DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (218)
.+++|+|.+|||||||+|+|+...... ......+.+.....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 489999999999999999998743211 1111122222233333322 246899999653
No 392
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.09 E-value=2.2e-05 Score=64.08 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=74.3
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-------h---HHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-------T---YNHLSSWLTDTKNLT-NPNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s---~~~~~~~~~~~~~~~-~~~~piivv~nK~ 130 (218)
....+.++|++|+..-+..|..++.+++++|||+++++-. . +.+....+..+.... -.+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 4457889999999988889999999999999999987521 1 222222333332211 1479999999999
Q ss_pred CCCC-----C-----------c--cccHHHHHHHHHh------------CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 131 DLEG-----S-----------R--DVRYDEAKKFAEE------------NDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 131 Dl~~-----~-----------~--~~~~~~~~~~~~~------------~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
|+-. . . +-..+.+..+... ..+.+..|+|.+..++..+|+.+.+.
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 9621 1 1 1233444444422 12245678898888899888887664
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=98.09 E-value=5.9e-06 Score=66.66 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPD----CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
.+++|+|.+|||||||+|+|+....... ..+..+++.....+..++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999986431110 1112222322333333322 3589999964
No 394
>PRK13695 putative NTPase; Provisional
Probab=98.05 E-value=0.00013 Score=52.62 Aligned_cols=80 Identities=8% Similarity=0.087 Sum_probs=43.3
Q ss_pred hhhccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169 83 SYYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT 161 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (218)
..+..+++ +++|--.. +... ..+.+.+......+.|++++.+|... ......+....+..+++++-
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~~-- 158 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELTP-- 158 (174)
T ss_pred hccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEcc--
Confidence 33455665 57773211 1111 22333344333457899999987532 12344455556677777754
Q ss_pred CCCHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKI 176 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (218)
.|=+++.+.+++.+
T Consensus 159 -~~r~~~~~~~~~~~ 172 (174)
T PRK13695 159 -ENRDSLPFEILNRL 172 (174)
T ss_pred -hhhhhHHHHHHHHH
Confidence 45557777777654
No 395
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.04 E-value=0.00022 Score=56.43 Aligned_cols=95 Identities=8% Similarity=0.124 Sum_probs=52.3
Q ss_pred EEEEEeeCcchhhhhhhhHhhhc--------cCCEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 64 IKLQIWDTAGQERFRAVTRSYYR--------GAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
....++++.|......+...++. ..+++|.|+|+..-... +.......++... =+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 45578899997765554444321 34788999999764321 1111122333332 288999999875
Q ss_pred CccccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHH
Q psy1169 135 SRDVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~ 169 (218)
.. +.+.+..+. ..++++.++. .......+|
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~~-~~v~~~~l~ 196 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVVH-GDIDLSLLF 196 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEecc-CCCCHHHHh
Confidence 32 344444443 4556665542 223444444
No 396
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.98 E-value=1.6e-05 Score=62.04 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (218)
-.++++|++|+|||||+|.|++....... ......+.....+..... ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999865432211 011111222223333322 2489999976543
No 397
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.97 E-value=3e-05 Score=56.22 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=42.0
Q ss_pred EEEEEeeCcchhhhhhh---hHh--hhccCCEEEEEEECCChhhHHHHHH-HHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 64 IKLQIWDTAGQERFRAV---TRS--YYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
....|+++.|......+ ... ..-..+.+|.|+|+..-.....+.. +..++.... ++++||+|+....
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh-
Confidence 46677888885544443 111 1234678899999977433333333 333343322 8899999986544
Q ss_pred ccHHHHHHHHHh
Q psy1169 138 VRYDEAKKFAEE 149 (218)
Q Consensus 138 ~~~~~~~~~~~~ 149 (218)
...+..++..+.
T Consensus 158 ~~i~~~~~~ir~ 169 (178)
T PF02492_consen 158 QKIERVREMIRE 169 (178)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 122444444443
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00014 Score=58.57 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=72.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEE------------------EEEEEE---------CCeEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFG------------------TRIIEV---------HGEKI 64 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~ 64 (218)
.--++++|++|+||||++..|....... ........+.+ ...+.. .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3468899999999999999986432100 00001111110 000100 01235
Q ss_pred EEEEeeCcchhhhhhh----hHhh--hccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCC
Q psy1169 65 KLQIWDTAGQERFRAV----TRSY--YRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGS 135 (218)
Q Consensus 65 ~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~ 135 (218)
.+.++||+|....... ...+ .....-.++|++++.. +....+..-+......... .-+--+|+||.|....
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 7789999996532221 1111 1123345888888764 3334332222222110000 0123577899996432
Q ss_pred ccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 136 RDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
.-.+..++...++|+..++.=
T Consensus 297 ----~G~~l~~~~~~~lPi~yvt~G 317 (374)
T PRK14722 297 ----LGGVLDTVIRYKLPVHYVSTG 317 (374)
T ss_pred ----ccHHHHHHHHHCcCeEEEecC
Confidence 245566667778887666643
No 399
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.96 E-value=0.00056 Score=49.55 Aligned_cols=85 Identities=21% Similarity=0.203 Sum_probs=58.6
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 141 (218)
..+.+.|+|+|+.... .....+..+|.+++++..+.. +...+..+++.+.. .+.|+.+|+|+.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~---~~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRH---FGIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHH---cCCCEEEEEeCCCCCcc---hHH
Confidence 4578899999976432 334567889999999988844 55556566555543 24678899999996322 235
Q ss_pred HHHHHHHhCCCcEE
Q psy1169 142 EAKKFAEENDLIFV 155 (218)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (218)
+++++++..+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 67777777787755
No 400
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.95 E-value=0.00012 Score=52.81 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=44.6
Q ss_pred EEEEEEeeCcchhhhh----hhhHhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 63 KIKLQIWDTAGQERFR----AVTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
.+.+.|+|++|..... .....+. ...+.+++|+|...... .+ .+...+.... + ...+++||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence 3457789999964221 1111122 24889999999865432 12 2333332222 2 356777999974432
Q ss_pred cccHHHHHHHHHhCCCcEE
Q psy1169 137 DVRYDEAKKFAEENDLIFV 155 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~ 155 (218)
..+...+...++|+.
T Consensus 156 ----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ----GAALSIRAVTGKPIK 170 (173)
T ss_pred ----chhhhhHHHHCcCeE
Confidence 223335555666644
No 401
>PRK00098 GTPase RsgA; Reviewed
Probab=97.95 E-value=1.7e-05 Score=62.34 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++++|++|+|||||+|.|++..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998654
No 402
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.93 E-value=0.00026 Score=52.12 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=48.3
Q ss_pred EEEEEeeCcchhhhhh----hhHhhhc--cCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 64 IKLQIWDTAGQERFRA----VTRSYYR--GAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
+.+.++||+|...... ....++. ..+-+++|++++.... .+.+..++..+ . +--+++||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~---~~~lIlTKlDet~~- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----G---IDGLILTKLDETAR- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----S---TCEEEEESTTSSST-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----c---CceEEEEeecCCCC-
Confidence 5688999999443211 1111211 5677899999887643 33333332221 1 12567999996433
Q ss_pred cccHHHHHHHHHhCCCcEEEeccC
Q psy1169 137 DVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
.-.+..++...++|+-.++.=
T Consensus 156 ---~G~~l~~~~~~~~Pi~~it~G 176 (196)
T PF00448_consen 156 ---LGALLSLAYESGLPISYITTG 176 (196)
T ss_dssp ---THHHHHHHHHHTSEEEEEESS
T ss_pred ---cccceeHHHHhCCCeEEEECC
Confidence 244566667778886666643
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00026 Score=59.22 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=71.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeE----------------EEEEEEEC-----------CeE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEF----------------GTRIIEVH-----------GEK 63 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~----------------~~~~~~~~-----------~~~ 63 (218)
..-.|+|+|+.|+||||++..|...-... ........+. ........ ...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34578999999999999998886421000 0000000000 00000001 124
Q ss_pred EEEEEeeCcchhhhhhhhHh---hhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 64 IKLQIWDTAGQERFRAVTRS---YYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
+.+.|+||+|.......... .+. .....++|++.... ...+...++.+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~---- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG---- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----
Confidence 67889999995432211000 011 12235677777643 3333333333322 235678999999632
Q ss_pred cHHHHHHHHHhCCCcEEEeccC
Q psy1169 139 RYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
..-.+..+....++++..++.=
T Consensus 499 ~lG~aLsv~~~~~LPI~yvt~G 520 (559)
T PRK12727 499 RFGSALSVVVDHQMPITWVTDG 520 (559)
T ss_pred chhHHHHHHHHhCCCEEEEeCC
Confidence 2245666667778887766643
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.87 E-value=0.00017 Score=50.61 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=35.0
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 131 (218)
.+.+.|+|++|.... ...++..+|-+|++...+-.+.+.-++. ..+.. -=+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhh------cCEEEEeCCC
Confidence 467788999885422 2347788898888877774444333222 11211 1278889987
No 405
>KOG3859|consensus
Probab=97.85 E-value=0.0001 Score=55.97 Aligned_cols=62 Identities=26% Similarity=0.482 Sum_probs=42.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----CPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
....++|+-+|..|.|||||+..|.+-.+... ..+.......+..+.-.+-.+.+.|+||.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 34579999999999999999999987665433 223333333333333344567888999999
No 406
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.84 E-value=0.00086 Score=54.02 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=80.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEEEEE-----------------EEEC----------CeEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRI-----------------IEVH----------GEKI 64 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~-----------------~~~~----------~~~~ 64 (218)
.=-|+++||.||||||.+-.|....... .....++.+.+... +... -..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 4468999999999999988875433211 11111222211100 0000 1245
Q ss_pred EEEEeeCcchhhhhh----hhHhhhccC--CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 65 KLQIWDTAGQERFRA----VTRSYYRGA--AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 65 ~~~i~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
.+.++||.|...++. -...++..+ .-+.+|++++... +++...++.+.... .--+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~~----i~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLFP----IDGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccCC----cceeEEEcccccC----
Confidence 788999999654332 233343333 2346677776552 34444444443321 1256789999642
Q ss_pred cHHHHHHHHHhCCCcEEEeccCCC--CCHHHH-HHHHHHHHHH
Q psy1169 139 RYDEAKKFAEENDLIFVEASAMTG--ENVEQA-FLETAKKIYQ 178 (218)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~S~~~~--~~i~~~-~~~i~~~~~~ 178 (218)
..-....++...+.|+..++.=.+ +++... -+++++.+..
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g 395 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILG 395 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhc
Confidence 234566667777888666654433 222211 1455555544
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=7.7e-05 Score=60.92 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=70.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEE----------------EEEEEE-----------CCeEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFG----------------TRIIEV-----------HGEKI 64 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~----------------~~~~~~-----------~~~~~ 64 (218)
.-.|+++|+.|+||||++..|.+..... ........+.+ ...... .-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 3589999999999999999876431100 00000000000 000000 01234
Q ss_pred EEEEeeCcchhhhh----hhhHhhhc--cCCEEEEEEECCC-hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 65 KLQIWDTAGQERFR----AVTRSYYR--GAAGALMVYDITR-RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 65 ~~~i~D~~G~~~~~----~~~~~~~~--~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
.+.++||+|..... .....+.. ..+-.++|+|++. .....++...+ . .--+--+++||.|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f---~----~~~~~~~I~TKlDEt~~-- 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY---Q----GHGIHGCIITKVDEAAS-- 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh---c----CCCCCEEEEEeeeCCCC--
Confidence 66799999954321 11222221 2334678888885 33333332222 2 11223678999996432
Q ss_pred ccHHHHHHHHHhCCCcEEEeccC
Q psy1169 138 VRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
.-.+..++...++|+..++.=
T Consensus 342 --~G~~l~~~~~~~lPi~yvt~G 362 (420)
T PRK14721 342 --LGIALDAVIRRKLVLHYVTNG 362 (420)
T ss_pred --ccHHHHHHHHhCCCEEEEECC
Confidence 244556677778887766643
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00039 Score=56.13 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=47.8
Q ss_pred EEEEEeeCcchhhhhh----hhHhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 64 IKLQIWDTAGQERFRA----VTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
+.+.|+||+|...... ....++ ...+.+++|+|++-.. +++...+..+.. -.+--+++||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence 5788999999643111 112222 2346678888875432 222233332222 1224678999997432
Q ss_pred ccHHHHHHHHHhCCCcEEEecc
Q psy1169 138 VRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
.-.+..++...++|+..++.
T Consensus 393 --~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 24455666677888666654
No 409
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.74 E-value=0.00083 Score=53.79 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=53.7
Q ss_pred EEEEEeeCcchhhhhhhhHhhh-------ccCCEEEEEEECCChhh--H--------------------HHHHH-HHHHH
Q psy1169 64 IKLQIWDTAGQERFRAVTRSYY-------RGAAGALMVYDITRRST--Y--------------------NHLSS-WLTDT 113 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~-~~~~~ 113 (218)
....++++.|......+...+. -..|++|.|+|+..-.. + ..+.. +..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4566889999766555444431 14678899999874311 0 00111 12333
Q ss_pred hhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CC--CcEEEeccCCCCCHHHHHH
Q psy1169 114 KNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-ND--LIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 114 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~S~~~~~~i~~~~~ 170 (218)
... =+|++||+|+....++ +.+++.... +. .+++++. ........+|+
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred HhC------CEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 322 2899999999765433 344444443 22 3455554 33455665554
No 410
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00033 Score=56.29 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=47.7
Q ss_pred EEEEEEeeCcchhhhh----hhhHhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 63 KIKLQIWDTAGQERFR----AVTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~----~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
.+.+.|+||+|..... .....+.. ..+.+++|++... ...++...+.... .-.+--+++||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~~- 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETTR- 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCCC-
Confidence 3678899999963221 11222222 3355566766532 2333333332221 11234677999996422
Q ss_pred cccHHHHHHHHHhCCCcEEEeccC
Q psy1169 137 DVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
.-.+..++...++|+..++.=
T Consensus 358 ---~G~~Lsv~~~tglPIsylt~G 378 (407)
T PRK12726 358 ---IGDLYTVMQETNLPVLYMTDG 378 (407)
T ss_pred ---ccHHHHHHHHHCCCEEEEecC
Confidence 245566677778887766653
No 411
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.72 E-value=0.0004 Score=45.50 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=49.3
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 18 YIIIG-DMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 18 i~v~G-~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
|.|.| ..|+||||+...+...-.. ...+ ...+..+ ..+.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56677 4689999998777432211 1111 1222222 12678899999875432 3367778999999987
Q ss_pred CCChhhHHHHHHHHH
Q psy1169 97 ITRRSTYNHLSSWLT 111 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~ 111 (218)
.+. .++..+..+++
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 754 34555555444
No 412
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.70 E-value=0.00054 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-.++|.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997654
No 413
>KOG1424|consensus
Probab=97.67 E-value=6.1e-05 Score=61.71 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=39.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
+...+.|.+||.|+|||||+||.|.+.+... +..|.-+..+.+..+ . -.+.+.|+||..
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--s---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--S---PSVCLCDCPGLV 370 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--C---CCceecCCCCcc
Confidence 3447999999999999999999999876432 222222223322222 2 145688999965
No 414
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00028 Score=57.44 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCC---------CCCC------------ceeeeEEEEE-E-----EECCeEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK-FMP---------DCPH------------TIGVEFGTRI-I-----EVHGEKIKLQ 67 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~-~~~---------~~~~------------~~~~~~~~~~-~-----~~~~~~~~~~ 67 (218)
.-++|+|++|+||||++..|.... ... ...+ ..+....... . ......+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886421 000 0000 0011110000 0 0011245778
Q ss_pred EeeCcchhhhh--h--hhHhhhc-----cCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 68 IWDTAGQERFR--A--VTRSYYR-----GAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 68 i~D~~G~~~~~--~--~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
++||+|..... . ....+++ ...-.++|+|++... ....+...+ . .--+--+|+||.|-...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f---~----~~~~~glIlTKLDEt~~-- 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY---E----SLNYRRILLTKLDEADF-- 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh---c----CCCCCEEEEEcccCCCC--
Confidence 99999954211 1 1222222 123568899988764 333332222 1 11223678999996432
Q ss_pred ccHHHHHHHHHhCCCcEEEeccCC
Q psy1169 138 VRYDEAKKFAEENDLIFVEASAMT 161 (218)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S~~~ 161 (218)
.-.+..++...++|+..++.=+
T Consensus 375 --~G~il~i~~~~~lPI~ylt~GQ 396 (432)
T PRK12724 375 --LGSFLELADTYSKSFTYLSVGQ 396 (432)
T ss_pred --ccHHHHHHHHHCCCEEEEecCC
Confidence 2345566667788876666543
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=97.62 E-value=0.00046 Score=56.79 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=46.8
Q ss_pred EEEEEEeeCcchhhhhh----hhHhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 63 KIKLQIWDTAGQERFRA----VTRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
.+.+.|+||+|.-.... ....+ .-..+.+++|+|.... +++......+.... ...-+|+||.|.....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence 36788999999532211 11111 1256778999998653 23333333333211 1235677999963222
Q ss_pred cccHHHHHHHHHhCCCcEEEecc
Q psy1169 137 DVRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
-.+.......++|+.++..
T Consensus 257 ----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 2245555666778666554
No 416
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.62 E-value=0.00039 Score=48.23 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=60.2
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC
Q psy1169 19 IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 98 (218)
Q Consensus 19 ~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (218)
+.-|..|+|||++.-.+...-.. ......-.+.... ...-.+.+.++|+|+... ......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLG---LANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCC---CCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC
Confidence 45578999999987766432110 1111111111100 011126788999998543 33456788999999998886
Q ss_pred ChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169 99 RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132 (218)
Q Consensus 99 ~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 132 (218)
.. ++..+...++.+.... ...++.+++|+.+.
T Consensus 78 ~~-s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PT-SITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred hh-HHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 44 3333334444443322 34567899999874
No 417
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.62 E-value=0.00031 Score=40.18 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=29.2
Q ss_pred ccCCEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169 86 RGAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 131 (218)
.-.++++|++|.+.. .+.+.-..+++.+.... .+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 456889999999884 55555556777777766 4799999999998
No 418
>KOG1487|consensus
Probab=97.61 E-value=0.00085 Score=50.67 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------hhhHhhhccC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYRGA 88 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 88 (218)
.+|-++|.|.+||||++..+.+.....................+++ -.+.+.|.||.-+-. .......+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999876433221111111111111222333 356677999953211 1222345677
Q ss_pred CEEEEEEECCC
Q psy1169 89 AGALMVYDITR 99 (218)
Q Consensus 89 d~~i~v~d~~~ 99 (218)
+.+++|+|+..
T Consensus 138 nli~~vld~~k 148 (358)
T KOG1487|consen 138 NLIFIVLDVLK 148 (358)
T ss_pred cEEEEEeeccC
Confidence 88888888754
No 419
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.60 E-value=0.00082 Score=52.12 Aligned_cols=92 Identities=21% Similarity=0.183 Sum_probs=62.7
Q ss_pred HhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 82 RSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
+.-..+.|-.|+++.+.+++ +...+..++-.+.. .++..+|++||.||....+...++........+.+++.+|++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence 33344567777777777764 45555555433332 456678889999997665443334555566689999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAKKI 176 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (218)
++.+++++.+.+...+
T Consensus 151 ~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 151 NGDGLEELAELLAGKI 166 (301)
T ss_pred CcccHHHHHHHhcCCe
Confidence 9999998887765543
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.59 E-value=0.00062 Score=55.96 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=48.1
Q ss_pred EEEEEEeeCcchhhhhh----hhHhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 63 KIKLQIWDTAGQERFRA----VTRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
.+.+.|+||+|.-.... ....+ .-..+.+++|+|+... +....+...+.... ...-+|+||.|-....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence 35788999999532211 11111 2257888999998754 23333333333222 1236679999953222
Q ss_pred cccHHHHHHHHHhCCCcEEEecc
Q psy1169 137 DVRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
-.+...+...++|+.++..
T Consensus 256 ----G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ----GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 2355556667788666554
No 421
>KOG0469|consensus
Probab=97.59 E-value=0.00021 Score=58.69 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=76.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC------------CCC----CCCCceeeeEEEEEE--E------------ECC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------------FMP----DCPHTIGVEFGTRII--E------------VHG 61 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~------------~~~----~~~~~~~~~~~~~~~--~------------~~~ 61 (218)
..+.-++.|+.....|||||-..|.... |.. +..+.+++....... + -++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 3566788999999999999999986321 111 111122222111111 1 123
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 132 (218)
..+-+.++|.||+..|.+.....++-.|+.++|+|.-+..-.+.-..+.+.+.. .+.-++++||.|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence 457788999999999999999999999999999999886544333233333332 3334788999994
No 422
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.58 E-value=0.00054 Score=46.65 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999764
No 423
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.56 E-value=7.7e-05 Score=50.30 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999965
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.00085 Score=55.30 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=48.5
Q ss_pred EEEEEEeeCcchhhhh----hhhHhhhc---cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 63 KIKLQIWDTAGQERFR----AVTRSYYR---GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
.+.+.|+||+|..... .....++. ...-.++|++.+-.. ..+...+..+.. -+ +--+++||.|....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~---~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSR---LP-LDGLIFTKLDETSS 372 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCC---CC-CCEEEEeccccccc
Confidence 3578899999964322 11222333 233557778876542 223232222221 11 23688999996322
Q ss_pred ccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 136 RDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
...+..++...++|+..++.=
T Consensus 373 ----~G~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 373 ----LGSILSLLIESGLPISYLTNG 393 (424)
T ss_pred ----ccHHHHHHHHHCCCEEEEeCC
Confidence 235667777788887766653
No 425
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.55 E-value=0.00092 Score=42.75 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=44.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh-hHhhhccCCEEEEEEE
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-TRSYYRGAAGALMVYD 96 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 96 (218)
+++.|..|+||||+...+...-.... .+...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g----------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG----------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC----------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988754321111 1111112 6778999986543321 2455667888888887
Q ss_pred CCChh
Q psy1169 97 ITRRS 101 (218)
Q Consensus 97 ~~~~~ 101 (218)
.....
T Consensus 68 ~~~~~ 72 (99)
T cd01983 68 PEALA 72 (99)
T ss_pred Cchhh
Confidence 77653
No 426
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00075 Score=48.39 Aligned_cols=142 Identities=21% Similarity=0.291 Sum_probs=76.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc---------hhhhhh---------
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG---------QERFRA--------- 79 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---------~~~~~~--------- 79 (218)
|.|+|.+|+|||||++.+.-.+.+. ...+.+++..+.+. -|..| .++.+.
T Consensus 35 isIIGsSGSGKSTfLRCiN~LE~P~-----------~G~I~v~geei~~k-~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~F 102 (256)
T COG4598 35 ISIIGSSGSGKSTFLRCINFLEKPS-----------AGSIRVNGEEIRLK-RDKDGQLKPADKRQLQRLRTRLGMVFQHF 102 (256)
T ss_pred EEEecCCCCchhHHHHHHHhhcCCC-----------CceEEECCeEEEee-eCCCCCeeeCCHHHHHHHHHHhhHhhhhc
Confidence 7899999999999999885433221 11222344333332 23333 111111
Q ss_pred -hhHhh--hcc-CCEEEEEEECCChhhHHHHHHHHHHHhhhcCC-CCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcE
Q psy1169 80 -VTRSY--YRG-AAGALMVYDITRRSTYNHLSSWLTDTKNLTNP-NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIF 154 (218)
Q Consensus 80 -~~~~~--~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
+|.+. +.+ ..+-+-|+-.+..+..+.+..++..+..+.+. .-|. -|....+.....+++++.+..+.+
T Consensus 103 NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-------~LSGGQQQR~aIARaLameP~vmL 175 (256)
T COG4598 103 NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA-------HLSGGQQQRVAIARALAMEPEVML 175 (256)
T ss_pred chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc-------ccCchHHHHHHHHHHHhcCCceEe
Confidence 11111 111 12335555556566666665555444332211 1221 122233334456777887877777
Q ss_pred E--EeccCCCCCHHHHHHHHHHHHHH
Q psy1169 155 V--EASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 155 ~--~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
| ++||++.+=+-+++..+-+.+.+
T Consensus 176 FDEPTSALDPElVgEVLkv~~~LAeE 201 (256)
T COG4598 176 FDEPTSALDPELVGEVLKVMQDLAEE 201 (256)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 7 59999999888888877776644
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=97.53 E-value=8.6e-05 Score=53.25 Aligned_cols=22 Identities=50% Similarity=0.699 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
||+|+|++|+|||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.52 E-value=8.3e-05 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999765
No 429
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.52 E-value=0.00056 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 430
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.50 E-value=0.0032 Score=52.02 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=46.2
Q ss_pred EEEEEeeCcchhhhhh-h---hH--hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 64 IKLQIWDTAGQERFRA-V---TR--SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
..+.|+||+|...... + .. ..+-.+|.+++|+|++... +.......+.... ...-+|+||.|....-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAKG- 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCcc-
Confidence 3788999999543221 1 11 1133578899999987752 2222222222111 1236778999963221
Q ss_pred ccHHHHHHHHHhCCCcEEEecc
Q psy1169 138 VRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
--+..+....+.|+.+++.
T Consensus 249 ---G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEec
Confidence 2344445556677555543
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00075 Score=56.19 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=52.3
Q ss_pred EEEEEeeCcchhhhhh---hhHhhhcc---CCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 64 IKLQIWDTAGQERFRA---VTRSYYRG---AAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
..+.++||+|...... .....+.. ..-.++|+|.... ....++...+. ....--+|+||.|....
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-------~~~~~g~IlTKlDet~~- 406 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-------GPGLAGCILTKLDEAAS- 406 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-------cCCCCEEEEeCCCCccc-
Confidence 3567999999432221 11111221 1225788888754 32322222221 12234577899996432
Q ss_pred cccHHHHHHHHHhCCCcEEEeccCCCCCH-HHHH----HHHHHHHHH
Q psy1169 137 DVRYDEAKKFAEENDLIFVEASAMTGENV-EQAF----LETAKKIYQ 178 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i-~~~~----~~i~~~~~~ 178 (218)
.-.+..+....++++..++.= .++ +++. +.+++.++.
T Consensus 407 ---~G~~l~i~~~~~lPI~yvt~G--Q~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 407 ---LGGALDVVIRYKLPLHYVSNG--QRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred ---chHHHHHHHHHCCCeEEEecC--CCChhhhccCCHHHHHHHHhc
Confidence 245666677778887766643 344 3332 344555544
No 432
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00094 Score=58.38 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCceeeeEEE----------------EEEEE-----------CCeEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPD---CPHTIGVEFGT----------------RIIEV-----------HGEKIKL 66 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~---~~~~~~~~~~~----------------~~~~~-----------~~~~~~~ 66 (218)
-|+|+|+.|+||||++..|........ .......+.+. ..... ....+.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 578999999999999998864321000 00000000000 00000 0123467
Q ss_pred EEeeCcchhhh----hhhhHhhh--ccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc
Q psy1169 67 QIWDTAGQERF----RAVTRSYY--RGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR 139 (218)
Q Consensus 67 ~i~D~~G~~~~----~~~~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 139 (218)
.|+||+|.-.. ........ ...+-.++|+|.+.. +.+.++...+.... .. -+--+|+||.|....
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~---~~-~i~glIlTKLDEt~~---- 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA---GE-DVDGCIITKLDEATH---- 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc---cC-CCCEEEEeccCCCCC----
Confidence 89999993221 11111111 234456889988753 33443333222211 00 123677999996432
Q ss_pred HHHHHHHHHhCCCcEEEeccC
Q psy1169 140 YDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~S~~ 160 (218)
.-.+..+....++|+..++.=
T Consensus 339 ~G~iL~i~~~~~lPI~yit~G 359 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVSTG 359 (767)
T ss_pred ccHHHHHHHHHCCCeEEEecC
Confidence 244556666778887766643
No 433
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00012 Score=52.71 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.+|+|+|++|+|||||.+.|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 434
>KOG0780|consensus
Probab=97.46 E-value=0.00062 Score=54.23 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=20.7
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~ 36 (218)
.....-=|.++|..|+||||.+-.|.
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA 122 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLA 122 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHH
Confidence 34455568999999999999987774
No 435
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.45 E-value=0.0038 Score=45.17 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEE--EeeCcchh-hhhhhhHhhhccCCEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQ--IWDTAGQE-RFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~D~~G~~-~~~~~~~~~~~~~d~~i 92 (218)
=.++++|++|+|||||++.+.+...+.. .. +.+++..+.+. -.+..|.+ ..-.+....+...++++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~---------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNG--DN---------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCC--cE---------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3688999999999999998876542211 11 11222221111 11133433 33445666666666655
Q ss_pred EE--EECCChhhHHHHHHHHHHH
Q psy1169 93 MV--YDITRRSTYNHLSSWLTDT 113 (218)
Q Consensus 93 ~v--~d~~~~~s~~~~~~~~~~~ 113 (218)
+- ...-|..+.+.+..++..+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHH
Confidence 52 2234455555555555544
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.42 E-value=0.00013 Score=50.75 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy1169 18 YIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~ 37 (218)
|+++|++|+|||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999964
No 437
>KOG2485|consensus
Probab=97.40 E-value=0.00033 Score=54.18 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=35.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC----CCCCCCceeeeEEEEE-EEECCeEEEEEEeeCcch
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF----MPDCPHTIGVEFGTRI-IEVHGEKIKLQIWDTAGQ 74 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~ 74 (218)
...+++.|+|.||+|||||+|.+..... ........+++..... +.+.... .+.++||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 4568999999999999999998853211 1111112222222222 3332222 3567899994
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.40 E-value=0.00019 Score=42.03 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-.+|.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998853
No 439
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.38 E-value=0.0066 Score=42.36 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999986653
No 440
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.38 E-value=0.00084 Score=50.01 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=36.7
Q ss_pred EEEEEeeCc-chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169 64 IKLQIWDTA-GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132 (218)
Q Consensus 64 ~~~~i~D~~-G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 132 (218)
+.+.++||- |.+.| .+...+.+|.+|+|+|.+-+ ++...+... .+....+ -.++.+|+||.|-
T Consensus 134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~taeri~-~L~~elg-~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAERIK-ELAEELG-IKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHHHHH-HHHHHhC-CceEEEEEeeccc
Confidence 344556653 23333 34556789999999998864 222222222 2222111 3779999999995
No 441
>PRK10646 ADP-binding protein; Provisional
Probab=97.37 E-value=0.0019 Score=45.31 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRA 79 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~ 79 (218)
-|++-|+-|+|||||.+.+...--. ....||... ...+.. +..-+.+.+|-..+.++...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtl---v~~Y~~~~~~l~H~DlYRL~~~~el~~ 92 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTL---VEPYTLDNLMVYHFDLYRLADPEELEF 92 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEee---EEEeeCCCCCEEEEeeccCCCHHHHHH
Confidence 3889999999999999999753211 122233211 122211 22346777777665544433
No 442
>KOG2484|consensus
Probab=97.36 E-value=0.00019 Score=57.18 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=40.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
...+++.|+|-|++||||+||+|.....-.. ....+.+...+.+..+ -.+.|+|.||.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ld---k~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLD---KKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheecc---CCceeccCCcee
Confidence 5779999999999999999999987664221 2233444444444433 356788999943
No 443
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00011 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
..=++|.||+|+|||||++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999998765
No 444
>PF05729 NACHT: NACHT domain
Probab=97.34 E-value=0.0026 Score=45.03 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
++|.|++|+||||++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998753
No 445
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0037 Score=50.82 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=48.7
Q ss_pred EEEEEEeeCcchhhhhh----hhHhhhccC--C-EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 63 KIKLQIWDTAGQERFRA----VTRSYYRGA--A-GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
.+.+.|+||+|.-.... ....++... + -.++|+|++... ..+...+..... -.+--+++||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCCc
Confidence 46788999999543211 122233322 3 478999988762 233333332221 1234678999996433
Q ss_pred ccccHHHHHHHHHhCCCcEEEecc
Q psy1169 136 RDVRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
.-.+..++...++|+..++.
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVTD 347 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEeC
Confidence 23455566667888666654
No 446
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.29 E-value=0.00068 Score=45.78 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=39.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
-|++-|+-|+|||||.+.+...--. ....||... ...+.... .-+.+.++-..+.++...+.-..+-..+++++
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l---~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~ 93 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSL---VNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICV 93 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT--S----TTTTS---EEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEE---EEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEE
Confidence 4889999999999999999753211 222233222 22222222 34567777776666554433222223366666
Q ss_pred E
Q psy1169 94 V 94 (218)
Q Consensus 94 v 94 (218)
|
T Consensus 94 I 94 (123)
T PF02367_consen 94 I 94 (123)
T ss_dssp E
T ss_pred E
Confidence 6
No 447
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.0033 Score=48.61 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC---------CCCC------------CceeeeEEEEEEE----------E-CCeE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFM---------PDCP------------HTIGVEFGTRIIE----------V-HGEK 63 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~---------~~~~------------~~~~~~~~~~~~~----------~-~~~~ 63 (218)
-+++++|++|+||||++..+...-.. .... ...++..... .. . ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 58999999999999999887532100 0000 0011111000 00 0 0124
Q ss_pred EEEEEeeCcchhhhhh----hhHhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 64 IKLQIWDTAGQERFRA----VTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
+.+.|+||+|...... ....++ -..+-+++|+|++.... ++..+++.+.. -.+--+++||.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~--d~~~~~~~f~~----~~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK--DMIEIITNFKD----IHIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH--HHHHHHHHhCC----CCCCEEEEEeecCCCC--
Confidence 6788999999652211 111122 23456789999864321 22223222222 2234678999997442
Q ss_pred ccHHHHHHHHHhCCCcEEEecc
Q psy1169 138 VRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
.-.+..++...++|+..++.
T Consensus 227 --~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 227 --SGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 23455566667888666654
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.28 E-value=0.0003 Score=42.48 Aligned_cols=21 Identities=38% Similarity=0.571 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998654
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.27 E-value=0.00017 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.532 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 450
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.26 E-value=0.0017 Score=44.99 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
-=|++-|+-|+|||||.+.+...--........+++. ...+.. ...-+.+.+|-....+++..+--..+-..+++++|
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl-v~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~~~gv~lI 104 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL-VEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFDGDGICLI 104 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee-ehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhCCCcEEEE
Confidence 3478899999999999999975432222111111111 222211 23456777777765554443322222223666666
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00034 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~ 39 (218)
|+++|++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999887643
No 452
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.22 E-value=0.0034 Score=41.36 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=54.6
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh
Q psy1169 21 IGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 100 (218)
Q Consensus 21 ~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (218)
-+..|+||||+...|...-.........-.+... ...-.+.++|+|+.... .....+..+|.+|++.+.+..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~------~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~ 77 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDL------QFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLP 77 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC------CCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChH
Confidence 3457899999887764321111011111111100 01117789999986543 334567889999888866543
Q ss_pred hhHHHHHHHHHHHhhhcCC-CCeEEEEeeC
Q psy1169 101 STYNHLSSWLTDTKNLTNP-NTVIFLIGNK 129 (218)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~-~~piivv~nK 129 (218)
+...+..+++.+.....+ ...+.+|+|+
T Consensus 78 -s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 -SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 444555555555544333 3456677664
No 453
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.20 E-value=0.0003 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|||||||++-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999988543
No 454
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.19 E-value=0.00035 Score=48.17 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999886543
No 455
>PRK06217 hypothetical protein; Validated
Probab=97.19 E-value=0.00036 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.+|+|+|.+|+|||||.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.0027 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~ 39 (218)
|+|+|++|+||||+++.++..-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 457
>KOG0459|consensus
Probab=97.17 E-value=0.00058 Score=54.61 Aligned_cols=157 Identities=20% Similarity=0.172 Sum_probs=86.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCC-------------------------------CCCCCCCceeeeEEEEEEEE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK-------------------------------FMPDCPHTIGVEFGTRIIEV 59 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (218)
++...++++|+|.-.+||||+-..|+... ..++.....+.. .....+
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvE--vGrA~F 152 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVE--VGRAYF 152 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceee--eeeEEE
Confidence 34677999999999999999876653210 000111001111 111112
Q ss_pred CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh---HHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCC
Q psy1169 60 HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~ 135 (218)
+-..-.+.|.|.||+..|-.....-...+|..++|+++.-.+- |+.--.-......+.- .-...++++||+|-+..
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 2233467899999998876655555567888888888755332 2221111111111111 23457888999996432
Q ss_pred c--cccHHH----HHHHHHh------CCCcEEEeccCCCCCHHHHH
Q psy1169 136 R--DVRYDE----AKKFAEE------NDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 136 ~--~~~~~~----~~~~~~~------~~~~~~~~S~~~~~~i~~~~ 169 (218)
. .-.+++ ...+... ....++++|..+|.++.+..
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1 111122 2233332 23448999999999988754
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.17 E-value=0.00052 Score=51.02 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=22.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
++...-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345567999999999999999999753
No 459
>PRK03839 putative kinase; Provisional
Probab=97.17 E-value=0.00038 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
+|+|+|++|+||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988643
No 460
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.16 E-value=0.0053 Score=47.79 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=58.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc------------------
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG------------------ 73 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G------------------ 73 (218)
..+-..++++|++|-|||+++++|....... ..... ..+.+..+..|.
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3444779999999999999999998654322 11110 011222333333
Q ss_pred ------hhhhhhhhHhhhccCCEEEEEEECCCh---hhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169 74 ------QERFRAVTRSYYRGAAGALMVYDITRR---STYNHLSSWLTDTKNLT-NPNTVIFLIGNKM 130 (218)
Q Consensus 74 ------~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~piivv~nK~ 130 (218)
...........++...+=++++|--.. .+...-..++..+.... .-++|++.+|+..
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 111223344567777777999985432 22222233333333332 2479999998764
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.15 E-value=0.00037 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999554
No 462
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.14 E-value=0.011 Score=46.17 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=42.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc--CCEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG--AAGALMV 94 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~v 94 (218)
.|+|.|++|+||||+++.|....+ ..+|-.....+..+....... .+.+.++
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av~ 61 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAVV 61 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 689999999999999999942211 012333333333333322222 3556777
Q ss_pred EECCChhhHHHHHHHHHHHhh
Q psy1169 95 YDITRRSTYNHLSSWLTDTKN 115 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~ 115 (218)
+|+.....+..+...+..+..
T Consensus 62 iD~r~~~~~~~~~~~~~~L~~ 82 (288)
T PRK05416 62 IDVRSRPFFDDLPEALDELRE 82 (288)
T ss_pred EccCchhhHHHHHHHHHHHHH
Confidence 888776544455555555544
No 463
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00041 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.=|+|+|++|+|||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999864
No 464
>PRK04195 replication factor C large subunit; Provisional
Probab=97.12 E-value=0.017 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.--++|.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999664
No 465
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.11 E-value=0.00065 Score=50.46 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
+....-|+|+|++|+|||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345567889999999999999999754
No 466
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.00045 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
+..++++|+|++|+|||+|+..|+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998754
No 467
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.10 E-value=0.00045 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998643
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.10 E-value=0.00047 Score=49.94 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.10 E-value=0.0005 Score=47.58 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999764
No 470
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.09 E-value=0.00067 Score=48.72 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKF 40 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~ 40 (218)
=.+.|+|++|+|||||+|-+.+-..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 3689999999999999998876543
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.00053 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~ 36 (218)
=.++|+|++|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999885
No 472
>PRK14530 adenylate kinase; Provisional
Probab=97.08 E-value=0.00052 Score=51.31 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
+|+|+|++||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.07 E-value=0.00053 Score=45.05 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1169 17 KYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~ 36 (218)
-++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999985
No 474
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.07 E-value=0.00047 Score=52.51 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy1169 18 YIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~ 37 (218)
++++||.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999975
No 475
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.07 E-value=0.00061 Score=46.55 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFM 41 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~ 41 (218)
-.++|+|++|+||||+++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999765543
No 476
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0013 Score=48.52 Aligned_cols=19 Identities=42% Similarity=0.622 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy1169 18 YIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~ 36 (218)
.+++||+|+|||||++.|-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 5899999999999999884
No 477
>PRK13949 shikimate kinase; Provisional
Probab=97.02 E-value=0.00068 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
+|+|+|++|+||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998754
No 478
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00057 Score=51.87 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-+.|+||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999987
No 479
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.01 E-value=0.00074 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.|.|+|+.|+|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 480
>PRK14532 adenylate kinase; Provisional
Probab=97.00 E-value=0.00062 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
++|+++|++|+||||+..+|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.00 E-value=0.00088 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
..-+.|+|++|+|||||+++++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999754
No 482
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.00078 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~ 39 (218)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999997654
No 483
>KOG3347|consensus
Probab=96.98 E-value=0.00053 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
+...+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 6678999999999999999999963
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.98 E-value=0.00068 Score=49.08 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999764
No 485
>PRK00625 shikimate kinase; Provisional
Probab=96.96 E-value=0.00074 Score=48.66 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
+|+++|.+|+||||+.+.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 486
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.00072 Score=54.75 Aligned_cols=25 Identities=16% Similarity=0.192 Sum_probs=20.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~ 36 (218)
...+..|+++|-.|+||||.+-.|.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHH
Confidence 4556789999999999999887663
No 487
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.00071 Score=50.46 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 379999999999999999965
No 488
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.95 E-value=0.00072 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-|+|+|++||||||+++.|..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 489
>PRK01889 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.0015 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-.++++|.+|+|||||++.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999998643
No 490
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.95 E-value=0.00034 Score=52.47 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=31.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (218)
..++|+.|+||||.++.+++---+ + ...+.+.++.+.-.+.|..|
T Consensus 31 ~GllG~NGAGKTTtfRmILglle~-----~------~G~I~~~g~~~~~~~~~rIG 75 (300)
T COG4152 31 FGLLGPNGAGKTTTFRMILGLLEP-----T------EGEITWNGGPLSQEIKNRIG 75 (300)
T ss_pred EEeecCCCCCccchHHHHhccCCc-----c------CceEEEcCcchhhhhhhhcc
Confidence 468999999999999999874321 1 33445666666666666655
No 491
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.93 E-value=0.00084 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
++|+|+|++||||||+...|..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998854
No 492
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.93 E-value=0.0076 Score=46.57 Aligned_cols=86 Identities=21% Similarity=0.216 Sum_probs=43.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
-|+|.|+.|+||||+++.++..-..... .....+- ..++..++ ..++.+-.- ....+.......++.---+|++-.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~-~iitiEd-p~E~~~~~-~~q~~v~~~-~~~~~~~~l~~~lR~~PD~i~vgE 157 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEK-NIITVED-PVEYQIPG-INQVQVNEK-AGLTFARGLRAILRQDPDIIMVGE 157 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCC-eEEEECC-CceecCCC-ceEEEeCCc-CCcCHHHHHHHHhccCCCEEEecc
Confidence 3899999999999999998764322111 1111110 11111111 122222211 122355555555654334566667
Q ss_pred CCChhhHHHH
Q psy1169 97 ITRRSTYNHL 106 (218)
Q Consensus 97 ~~~~~s~~~~ 106 (218)
+.+.+++..+
T Consensus 158 iR~~e~a~~~ 167 (264)
T cd01129 158 IRDAETAEIA 167 (264)
T ss_pred CCCHHHHHHH
Confidence 7777765443
No 493
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.93 E-value=0.00081 Score=49.55 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
|.|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999664
No 494
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.00081 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~ 36 (218)
++|+|.|.||+||||+.++|-
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999986
No 495
>PRK02496 adk adenylate kinase; Provisional
Probab=96.91 E-value=0.001 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.+++|+|++|+||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 496
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.90 E-value=0.001 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 497
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.90 E-value=0.00099 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.-.++|+|++|+|||||++.+++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999987643
No 498
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.89 E-value=0.00094 Score=49.97 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999997653
No 499
>PRK14531 adenylate kinase; Provisional
Probab=96.88 E-value=0.00095 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.+|+++|+||+||||+.+.|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998854
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.88 E-value=0.00089 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997643
Done!