Query psy1169
Match_columns 218
No_of_seqs 147 out of 1781
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 16:23:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.3E-43 4.4E-48 263.7 18.8 167 13-179 11-177 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 1E-37 3.5E-42 230.9 23.8 175 11-185 4-178 (206)
3 1vg8_A RAS-related protein RAB 100.0 4.4E-36 1.5E-40 222.1 19.4 172 11-183 4-180 (207)
4 3cpj_B GTP-binding protein YPT 100.0 4.1E-36 1.4E-40 225.0 19.0 179 9-187 7-185 (223)
5 3tkl_A RAS-related protein RAB 100.0 7.4E-35 2.5E-39 213.7 24.6 176 8-183 9-184 (196)
6 2hup_A RAS-related protein RAB 100.0 4.9E-35 1.7E-39 215.9 22.2 175 7-181 21-196 (201)
7 2bme_A RAB4A, RAS-related prot 100.0 9.3E-35 3.2E-39 211.5 23.3 180 8-187 3-182 (186)
8 2ew1_A RAS-related protein RAB 100.0 6.1E-35 2.1E-39 215.3 22.0 173 10-182 21-193 (201)
9 2bov_A RAla, RAS-related prote 100.0 7.6E-35 2.6E-39 215.2 22.1 169 11-180 10-179 (206)
10 2a5j_A RAS-related protein RAB 100.0 1.2E-34 4E-39 212.1 22.7 176 8-183 14-189 (191)
11 2o52_A RAS-related protein RAB 100.0 7E-35 2.4E-39 214.8 20.8 180 7-186 17-196 (200)
12 2fu5_C RAS-related protein RAB 100.0 3.2E-35 1.1E-39 213.5 17.6 173 9-181 2-174 (183)
13 1z0f_A RAB14, member RAS oncog 100.0 2.6E-34 9E-39 207.6 22.3 170 9-178 9-178 (179)
14 2oil_A CATX-8, RAS-related pro 100.0 2.9E-34 9.9E-39 210.2 22.5 175 7-181 17-191 (193)
15 1zbd_A Rabphilin-3A; G protein 100.0 6.2E-34 2.1E-38 210.1 24.3 174 10-183 3-176 (203)
16 3dz8_A RAS-related protein RAB 100.0 5.4E-35 1.9E-39 213.8 16.3 174 8-181 16-189 (191)
17 2gf9_A RAS-related protein RAB 100.0 7.1E-34 2.4E-38 207.5 22.1 172 9-180 16-187 (189)
18 3tw8_B RAS-related protein RAB 100.0 6.2E-34 2.1E-38 206.0 21.2 174 8-182 2-175 (181)
19 2il1_A RAB12; G-protein, GDP, 100.0 5.7E-34 2E-38 208.6 20.2 172 8-179 19-191 (192)
20 2efe_B Small GTP-binding prote 100.0 1.7E-33 5.7E-38 203.9 22.2 168 11-178 8-175 (181)
21 3kkq_A RAS-related protein M-R 100.0 2.3E-33 7.7E-38 203.7 22.6 170 8-178 11-182 (183)
22 1z08_A RAS-related protein RAB 100.0 4.3E-34 1.5E-38 204.9 18.3 167 12-178 3-169 (170)
23 1r2q_A RAS-related protein RAB 100.0 1.3E-33 4.5E-38 202.1 20.4 165 12-176 3-167 (170)
24 2fg5_A RAB-22B, RAS-related pr 100.0 8.8E-34 3E-38 207.6 19.5 171 8-178 16-186 (192)
25 1g16_A RAS-related protein SEC 100.0 1.3E-33 4.5E-38 202.3 19.9 166 14-180 2-167 (170)
26 3bc1_A RAS-related protein RAB 100.0 3.3E-33 1.1E-37 204.3 22.4 173 10-182 6-189 (195)
27 2g6b_A RAS-related protein RAB 100.0 4.3E-33 1.5E-37 201.5 22.6 170 10-179 5-175 (180)
28 2y8e_A RAB-protein 6, GH09086P 100.0 8.8E-34 3E-38 204.8 18.9 174 3-176 2-175 (179)
29 2fn4_A P23, RAS-related protei 100.0 2.8E-33 9.6E-38 202.5 21.5 171 9-180 3-174 (181)
30 1z0j_A RAB-22, RAS-related pro 100.0 5.6E-33 1.9E-37 199.0 22.8 165 12-176 3-167 (170)
31 3cph_A RAS-related protein SEC 100.0 3.9E-33 1.3E-37 207.1 22.5 173 10-183 15-187 (213)
32 2p5s_A RAS and EF-hand domain 100.0 9.1E-34 3.1E-38 208.7 18.3 171 8-178 21-197 (199)
33 2f7s_A C25KG, RAS-related prot 100.0 1.8E-33 6.2E-38 209.7 20.1 174 8-181 18-202 (217)
34 3t5g_A GTP-binding protein RHE 100.0 2.9E-33 1E-37 202.7 20.5 168 11-179 2-170 (181)
35 1x3s_A RAS-related protein RAB 100.0 1.1E-32 3.9E-37 201.8 23.8 173 6-179 6-179 (195)
36 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-32 4.3E-37 198.6 23.6 167 11-178 3-174 (177)
37 1ek0_A Protein (GTP-binding pr 100.0 2.7E-33 9.1E-38 200.6 19.5 163 14-176 2-167 (170)
38 1z06_A RAS-related protein RAB 100.0 3.9E-33 1.3E-37 203.6 20.7 168 11-178 16-188 (189)
39 1z2a_A RAS-related protein RAB 100.0 2.1E-33 7.1E-38 200.8 18.6 166 12-178 2-167 (168)
40 2g3y_A GTP-binding protein GEM 100.0 4.6E-33 1.6E-37 206.3 20.3 171 8-179 30-204 (211)
41 3cbq_A GTP-binding protein REM 100.0 3.9E-33 1.3E-37 204.7 19.2 169 11-179 19-189 (195)
42 3ihw_A Centg3; RAS, centaurin, 100.0 2E-32 7E-37 199.1 22.5 165 9-180 14-182 (184)
43 3clv_A RAB5 protein, putative; 100.0 2.5E-32 8.6E-37 201.3 23.1 167 12-181 4-207 (208)
44 2gf0_A GTP-binding protein DI- 100.0 1E-32 3.6E-37 202.7 20.6 164 13-178 6-171 (199)
45 3q85_A GTP-binding protein REM 100.0 8E-33 2.7E-37 198.2 19.5 165 15-179 2-168 (169)
46 3c5c_A RAS-like protein 12; GD 100.0 3.9E-33 1.3E-37 203.4 18.0 165 12-178 18-186 (187)
47 2nzj_A GTP-binding protein REM 100.0 2E-32 6.8E-37 197.1 21.0 168 13-181 2-172 (175)
48 2yc2_C IFT27, small RAB-relate 100.0 1.7E-33 5.9E-38 208.1 15.8 169 13-181 18-195 (208)
49 2j0v_A RAC-like GTP-binding pr 100.0 2.8E-33 9.7E-38 207.9 16.3 166 12-179 6-181 (212)
50 3reg_A RHO-like small GTPase; 100.0 3.5E-32 1.2E-36 199.3 21.1 167 11-179 19-189 (194)
51 1ky3_A GTP-binding protein YPT 100.0 1.1E-32 3.8E-37 199.5 18.2 169 11-179 4-179 (182)
52 1u8z_A RAS-related protein RAL 100.0 3.4E-32 1.2E-36 194.3 20.5 164 14-178 3-167 (168)
53 3oes_A GTPase rhebl1; small GT 100.0 5.2E-33 1.8E-37 204.9 16.3 169 10-179 19-188 (201)
54 3q3j_B RHO-related GTP-binding 100.0 1.2E-32 4E-37 205.0 18.1 169 10-180 22-205 (214)
55 2iwr_A Centaurin gamma 1; ANK 100.0 4.3E-32 1.5E-36 196.1 20.3 163 13-182 5-173 (178)
56 2hxs_A RAB-26, RAS-related pro 100.0 3.8E-33 1.3E-37 201.5 14.7 167 13-179 4-174 (178)
57 2a9k_A RAS-related protein RAL 100.0 8.6E-32 2.9E-36 195.7 21.8 168 12-180 15-183 (187)
58 4dsu_A GTPase KRAS, isoform 2B 100.0 1.3E-31 4.6E-36 195.0 22.6 167 13-181 2-169 (189)
59 1c1y_A RAS-related protein RAP 100.0 5E-32 1.7E-36 193.5 19.5 161 15-176 3-165 (167)
60 3q72_A GTP-binding protein RAD 100.0 6.8E-32 2.3E-36 192.7 19.7 163 15-179 2-165 (166)
61 2atx_A Small GTP binding prote 100.0 9E-32 3.1E-36 197.1 20.8 167 10-178 13-193 (194)
62 1kao_A RAP2A; GTP-binding prot 100.0 6.3E-32 2.1E-36 192.7 19.1 163 15-178 3-166 (167)
63 2atv_A RERG, RAS-like estrogen 100.0 7.4E-32 2.5E-36 198.0 20.0 166 12-179 25-192 (196)
64 1gwn_A RHO-related GTP-binding 100.0 2.7E-32 9.3E-37 201.7 17.8 170 7-178 20-204 (205)
65 2j1l_A RHO-related GTP-binding 100.0 6.2E-32 2.1E-36 201.1 18.9 169 9-179 28-210 (214)
66 2q3h_A RAS homolog gene family 100.0 1E-31 3.4E-36 197.9 19.1 169 11-181 16-198 (201)
67 1m7b_A RND3/RHOE small GTP-bin 100.0 6.3E-32 2.2E-36 196.4 17.8 165 12-178 4-183 (184)
68 3t1o_A Gliding protein MGLA; G 100.0 2.3E-32 7.8E-37 200.4 14.6 175 4-182 3-196 (198)
69 4djt_A GTP-binding nuclear pro 100.0 6.8E-32 2.3E-36 201.3 16.7 171 11-181 7-178 (218)
70 2gco_A H9, RHO-related GTP-bin 100.0 7.3E-31 2.5E-35 193.4 21.2 165 12-178 22-200 (201)
71 3l0i_B RAS-related protein RAB 100.0 2.3E-34 7.8E-39 211.9 2.0 171 8-178 26-196 (199)
72 3con_A GTPase NRAS; structural 100.0 1.7E-30 5.9E-35 189.6 22.4 165 13-179 19-184 (190)
73 2f9l_A RAB11B, member RAS onco 100.0 2.4E-30 8.3E-35 190.4 23.1 171 13-183 3-173 (199)
74 2ce2_X GTPase HRAS; signaling 100.0 1.8E-30 6.2E-35 184.9 21.8 162 15-178 3-165 (166)
75 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.7E-31 1.6E-35 191.7 19.1 164 13-178 3-180 (186)
76 2erx_A GTP-binding protein DI- 100.0 3.4E-31 1.2E-35 189.9 17.8 162 14-176 2-165 (172)
77 2cjw_A GTP-binding protein GEM 100.0 1.9E-30 6.6E-35 189.9 20.4 166 13-179 4-173 (192)
78 2fv8_A H6, RHO-related GTP-bin 100.0 1.5E-30 5.2E-35 192.6 19.8 165 13-179 23-201 (207)
79 3bwd_D RAC-like GTP-binding pr 100.0 5E-32 1.7E-36 196.2 11.1 164 12-177 5-180 (182)
80 3gj0_A GTP-binding nuclear pro 100.0 9.3E-32 3.2E-36 201.0 12.8 172 5-179 5-176 (221)
81 4bas_A ADP-ribosylation factor 100.0 7.9E-31 2.7E-35 192.6 16.6 170 6-179 8-190 (199)
82 4gzl_A RAS-related C3 botulinu 100.0 9.3E-31 3.2E-35 193.3 16.7 163 12-176 27-203 (204)
83 1oix_A RAS-related protein RAB 100.0 1.2E-29 4E-34 185.6 20.8 166 11-176 25-190 (191)
84 1zd9_A ADP-ribosylation factor 100.0 5.5E-30 1.9E-34 186.8 14.5 160 12-177 19-184 (188)
85 1upt_A ARL1, ADP-ribosylation 100.0 1.5E-29 5.2E-34 181.3 16.5 159 13-178 5-169 (171)
86 1r8s_A ADP-ribosylation factor 100.0 5.1E-30 1.8E-34 182.6 13.1 156 16-178 1-162 (164)
87 2h57_A ADP-ribosylation factor 100.0 3.6E-29 1.2E-33 182.7 17.7 163 10-178 16-187 (190)
88 1ksh_A ARF-like protein 2; sma 100.0 7.3E-29 2.5E-33 180.3 18.6 160 13-179 16-181 (186)
89 1f6b_A SAR1; gtpases, N-termin 100.0 2.9E-29 9.8E-34 184.5 15.7 156 13-175 23-196 (198)
90 2zej_A Dardarin, leucine-rich 100.0 6.3E-30 2.2E-34 185.9 11.9 164 15-179 2-179 (184)
91 1m2o_B GTP-binding protein SAR 100.0 8.6E-29 2.9E-33 180.8 17.9 156 13-175 21-189 (190)
92 2h17_A ADP-ribosylation factor 100.0 2E-29 7E-34 182.6 13.5 161 8-175 14-180 (181)
93 2b6h_A ADP-ribosylation factor 100.0 2.2E-29 7.5E-34 184.3 12.3 159 12-177 26-190 (192)
94 1zj6_A ADP-ribosylation factor 100.0 1.9E-28 6.6E-33 178.4 16.9 159 13-178 14-178 (187)
95 2wkq_A NPH1-1, RAS-related C3 100.0 4E-28 1.4E-32 191.6 19.5 164 13-178 153-330 (332)
96 3llu_A RAS-related GTP-binding 100.0 1.5E-29 5.1E-34 185.7 10.3 164 8-176 13-195 (196)
97 1fzq_A ADP-ribosylation factor 100.0 8.1E-29 2.8E-33 179.6 13.9 159 13-178 14-178 (181)
98 2x77_A ADP-ribosylation factor 100.0 2.7E-29 9.3E-34 183.1 9.8 160 13-179 20-185 (189)
99 3th5_A RAS-related C3 botulinu 99.9 5.4E-31 1.8E-35 194.5 0.0 162 13-176 28-203 (204)
100 1moz_A ARL1, ADP-ribosylation 100.0 5E-29 1.7E-33 180.6 10.1 160 13-179 16-181 (183)
101 3c5h_A Glucocorticoid receptor 100.0 5.6E-29 1.9E-33 189.8 6.9 167 8-176 12-253 (255)
102 2fh5_B SR-beta, signal recogni 99.9 9.2E-27 3.1E-31 173.0 17.1 160 13-175 5-213 (214)
103 2qu8_A Putative nucleolar GTP- 99.9 1.4E-26 4.7E-31 173.8 17.3 166 13-182 27-209 (228)
104 2wji_A Ferrous iron transport 99.9 2.9E-27 1E-31 168.8 13.0 153 15-176 3-163 (165)
105 1svi_A GTP-binding protein YSX 99.9 4.7E-27 1.6E-31 171.9 14.3 162 8-176 16-193 (195)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 4E-27 1.4E-31 184.0 14.6 161 14-178 2-181 (307)
107 3o47_A ADP-ribosylation factor 99.9 2.3E-27 7.8E-32 186.9 9.6 159 13-178 163-327 (329)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 9.1E-28 3.1E-32 186.4 6.9 158 17-181 1-177 (331)
109 2lkc_A Translation initiation 99.9 4.1E-26 1.4E-30 164.4 14.5 158 13-179 6-172 (178)
110 3lvq_E ARF-GAP with SH3 domain 99.9 1.5E-26 5.2E-31 192.0 12.8 161 12-179 319-485 (497)
111 2cxx_A Probable GTP-binding pr 99.9 2.1E-26 7.2E-31 167.7 11.8 156 16-180 2-186 (190)
112 2wjg_A FEOB, ferrous iron tran 99.9 3.5E-26 1.2E-30 166.3 11.0 157 14-179 6-170 (188)
113 3pqc_A Probable GTP-binding pr 99.9 2.7E-25 9.3E-30 162.3 15.6 162 7-178 15-194 (195)
114 3iev_A GTP-binding protein ERA 99.9 9E-25 3.1E-29 170.7 17.7 165 9-177 4-181 (308)
115 2dyk_A GTP-binding protein; GT 99.9 3E-25 1E-29 157.3 13.6 150 16-176 2-160 (161)
116 2gj8_A MNME, tRNA modification 99.9 5.6E-26 1.9E-30 163.3 9.6 153 14-176 3-164 (172)
117 3a1s_A Iron(II) transport prot 99.9 3.1E-25 1.1E-29 169.1 12.8 156 13-177 3-166 (258)
118 3dpu_A RAB family protein; roc 99.9 5.5E-26 1.9E-30 190.0 8.3 165 11-179 37-209 (535)
119 3iby_A Ferrous iron transport 99.9 1.5E-25 5.2E-30 170.6 8.0 151 16-175 2-164 (256)
120 4dhe_A Probable GTP-binding pr 99.9 8.3E-25 2.8E-29 163.3 11.5 166 10-179 24-212 (223)
121 3b1v_A Ferrous iron uptake tra 99.9 2.7E-25 9.1E-30 170.4 8.2 153 14-176 2-162 (272)
122 1nrj_B SR-beta, signal recogni 99.9 6.8E-25 2.3E-29 163.3 6.9 144 12-164 9-170 (218)
123 3k53_A Ferrous iron transport 99.9 3.9E-24 1.3E-28 164.4 11.2 157 15-179 3-167 (271)
124 3i8s_A Ferrous iron transport 99.9 8.9E-25 3.1E-29 168.1 7.3 153 15-176 3-167 (274)
125 2hjg_A GTP-binding protein ENG 99.9 1.6E-23 5.4E-28 171.0 14.8 161 13-179 173-350 (436)
126 4dcu_A GTP-binding protein ENG 99.9 6.4E-23 2.2E-27 168.3 14.7 162 12-179 192-370 (456)
127 3gee_A MNME, tRNA modification 99.9 5.8E-23 2E-27 168.5 13.8 157 14-177 232-397 (476)
128 2e87_A Hypothetical protein PH 99.9 2.3E-22 8E-27 160.1 16.4 162 13-179 165-337 (357)
129 1wf3_A GTP-binding protein; GT 99.9 8.7E-23 3E-27 158.7 12.8 157 13-176 5-171 (301)
130 3qq5_A Small GTP-binding prote 99.9 1.3E-23 4.5E-28 169.7 6.6 159 11-178 30-196 (423)
131 1lnz_A SPO0B-associated GTP-bi 99.9 1.2E-22 4E-27 160.1 10.3 158 16-178 159-330 (342)
132 2ywe_A GTP-binding protein LEP 99.9 4.2E-21 1.4E-25 160.7 18.1 160 12-177 3-183 (600)
133 3cb4_D GTP-binding protein LEP 99.9 2.5E-21 8.5E-26 162.4 16.6 159 13-177 2-181 (599)
134 1s0u_A EIF-2-gamma, translatio 99.9 1E-20 3.6E-25 153.1 19.3 160 11-176 4-196 (408)
135 3sjy_A Translation initiation 99.9 4.9E-21 1.7E-25 154.8 17.3 160 11-176 4-190 (403)
136 1xzp_A Probable tRNA modificat 99.9 1E-21 3.5E-26 161.2 13.2 154 15-179 243-406 (482)
137 3lxx_A GTPase IMAP family memb 99.9 1.6E-21 5.4E-26 147.2 12.3 165 10-178 24-214 (239)
138 1wb1_A Translation elongation 99.9 9.9E-21 3.4E-25 155.9 17.0 159 13-177 17-188 (482)
139 2xtp_A GTPase IMAP family memb 99.9 5.7E-21 2E-25 145.8 14.4 165 11-179 18-209 (260)
140 1cip_A Protein (guanine nucleo 99.9 3E-21 1E-25 152.6 12.9 117 63-179 192-345 (353)
141 3j2k_7 ERF3, eukaryotic polype 99.9 9.4E-21 3.2E-25 154.5 16.2 159 10-170 12-217 (439)
142 2qtf_A Protein HFLX, GTP-bindi 99.9 1.7E-20 5.9E-25 149.2 17.2 160 17-179 181-355 (364)
143 3ohm_A Guanine nucleotide-bind 99.9 4.5E-21 1.5E-25 149.6 12.5 118 62-179 165-319 (327)
144 1kk1_A EIF2gamma; initiation o 99.9 1.3E-20 4.5E-25 152.7 15.7 160 11-176 6-198 (410)
145 1mky_A Probable GTP-binding pr 99.9 9.9E-21 3.4E-25 154.6 14.8 151 16-178 2-166 (439)
146 1mky_A Probable GTP-binding pr 99.9 1.9E-20 6.5E-25 153.0 16.3 161 13-179 178-356 (439)
147 3lxw_A GTPase IMAP family memb 99.9 1.1E-20 3.7E-25 143.2 13.4 166 12-179 18-209 (247)
148 3geh_A MNME, tRNA modification 99.9 1.4E-21 4.7E-26 159.8 9.0 153 14-178 223-384 (462)
149 2qag_A Septin-2, protein NEDD5 99.9 7.2E-22 2.5E-26 157.2 7.2 167 13-184 35-239 (361)
150 3p26_A Elongation factor 1 alp 99.8 1.6E-21 5.4E-26 161.0 9.0 151 13-167 31-227 (483)
151 2ged_A SR-beta, signal recogni 99.8 2.7E-21 9.1E-26 141.0 9.0 118 12-138 45-174 (193)
152 3t5d_A Septin-7; GTP-binding p 99.8 4.3E-21 1.5E-25 147.6 10.5 161 12-176 5-202 (274)
153 1ega_A Protein (GTP-binding pr 99.8 6.1E-21 2.1E-25 148.5 11.3 156 14-176 7-173 (301)
154 2hjg_A GTP-binding protein ENG 99.8 1.9E-21 6.5E-26 158.8 7.9 152 16-177 4-164 (436)
155 3izy_P Translation initiation 99.8 9.8E-23 3.4E-27 168.6 -2.4 159 13-176 2-166 (537)
156 1d2e_A Elongation factor TU (E 99.8 2.6E-20 8.7E-25 150.3 11.0 159 14-176 2-193 (397)
157 4fid_A G protein alpha subunit 99.8 3.5E-20 1.2E-24 145.1 10.8 120 62-181 159-331 (340)
158 2elf_A Protein translation elo 99.8 4.4E-20 1.5E-24 147.2 11.3 146 17-178 23-180 (370)
159 2xtz_A Guanine nucleotide-bind 99.8 8.8E-20 3E-24 144.2 12.0 118 62-179 181-346 (354)
160 2c78_A Elongation factor TU-A; 99.8 2.3E-20 7.7E-25 151.1 8.8 149 12-164 8-180 (405)
161 3tr5_A RF-3, peptide chain rel 99.8 2.7E-20 9.3E-25 154.5 9.4 118 12-135 10-149 (528)
162 1zun_B Sulfate adenylate trans 99.8 2.7E-19 9.3E-24 145.9 15.0 156 12-170 21-216 (434)
163 1jny_A EF-1-alpha, elongation 99.8 4.7E-21 1.6E-25 156.3 4.5 155 13-170 4-205 (435)
164 1g7s_A Translation initiation 99.8 9E-20 3.1E-24 153.1 12.0 159 14-179 4-219 (594)
165 4dcu_A GTP-binding protein ENG 99.8 3E-20 1E-24 152.4 8.6 154 14-176 22-183 (456)
166 2aka_B Dynamin-1; fusion prote 99.8 4.7E-20 1.6E-24 143.5 8.5 164 10-176 21-251 (299)
167 1r5b_A Eukaryotic peptide chai 99.8 1.7E-20 5.9E-25 154.1 5.8 155 13-169 41-243 (467)
168 3izq_1 HBS1P, elongation facto 99.8 2E-20 6.8E-25 157.9 4.9 154 13-168 165-362 (611)
169 1pui_A ENGB, probable GTP-bind 99.8 5.4E-19 1.8E-23 130.5 11.9 157 12-177 23-198 (210)
170 3avx_A Elongation factor TS, e 99.8 4.3E-19 1.5E-23 155.9 12.4 159 12-174 293-482 (1289)
171 1zo1_I IF2, translation initia 99.8 2.7E-21 9.1E-26 158.8 -1.7 156 13-174 2-163 (501)
172 1dar_A EF-G, elongation factor 99.8 2.5E-18 8.4E-23 147.2 14.7 125 4-134 1-143 (691)
173 3def_A T7I23.11 protein; chlor 99.8 4.7E-18 1.6E-22 129.8 13.7 122 14-137 35-168 (262)
174 1f60_A Elongation factor EEF1A 99.8 4.3E-19 1.5E-23 145.5 7.7 150 13-168 5-202 (458)
175 2dy1_A Elongation factor G; tr 99.8 7E-18 2.4E-22 143.9 14.1 118 12-133 6-139 (665)
176 2qnr_A Septin-2, protein NEDD5 99.8 4.7E-19 1.6E-23 137.7 6.1 165 13-183 16-219 (301)
177 1udx_A The GTP-binding protein 99.8 8.1E-18 2.8E-22 135.5 13.3 159 17-179 159-326 (416)
178 3t34_A Dynamin-related protein 99.8 8.9E-19 3E-23 139.7 7.3 158 14-173 33-256 (360)
179 2j69_A Bacterial dynamin-like 99.8 1.6E-17 5.5E-22 142.3 15.4 164 13-179 67-326 (695)
180 3mca_A HBS1, elongation factor 99.7 5.6E-20 1.9E-24 154.7 -1.3 149 12-166 174-371 (592)
181 1jwy_B Dynamin A GTPase domain 99.7 1.5E-17 5.3E-22 130.2 12.6 164 12-178 21-262 (315)
182 2h5e_A Peptide chain release f 99.7 2.4E-17 8.2E-22 136.9 14.0 119 13-135 11-149 (529)
183 1h65_A Chloroplast outer envel 99.7 1.9E-17 6.4E-22 127.0 10.5 122 13-137 37-171 (270)
184 1zcb_A G alpha I/13; GTP-bindi 99.7 1.2E-17 4.1E-22 132.5 9.3 117 63-179 200-354 (362)
185 1azs_C GS-alpha; complex (lyas 99.7 3.7E-17 1.3E-21 130.8 11.9 122 56-179 211-386 (402)
186 2rdo_7 EF-G, elongation factor 99.7 2.8E-16 9.5E-21 134.7 17.3 120 11-134 6-148 (704)
187 2qag_C Septin-7; cell cycle, c 99.7 1.4E-17 4.9E-22 134.2 8.1 159 13-175 29-224 (418)
188 2xex_A Elongation factor G; GT 99.7 3.8E-16 1.3E-20 133.7 16.8 119 11-135 6-142 (693)
189 1u0l_A Probable GTPase ENGC; p 99.7 3.4E-18 1.2E-22 133.0 3.0 134 30-174 32-169 (301)
190 1wxq_A GTP-binding protein; st 99.7 2.2E-17 7.6E-22 132.7 7.3 85 16-100 1-114 (397)
191 2x2e_A Dynamin-1; nitration, h 99.6 1.4E-17 4.9E-22 132.3 1.0 160 12-174 28-254 (353)
192 2wsm_A Hydrogenase expression/ 99.6 1.1E-16 3.7E-21 119.0 4.6 156 13-179 28-215 (221)
193 1jal_A YCHF protein; nucleotid 99.6 7.1E-15 2.4E-19 116.1 15.0 146 15-160 2-239 (363)
194 2hf9_A Probable hydrogenase ni 99.6 5.8E-18 2E-22 126.4 -3.0 154 14-178 37-224 (226)
195 3vqt_A RF-3, peptide chain rel 99.6 4E-15 1.4E-19 124.2 12.9 117 12-134 28-166 (548)
196 1n0u_A EF-2, elongation factor 99.6 2E-15 6.9E-20 131.7 10.8 118 12-133 16-163 (842)
197 3p32_A Probable GTPase RV1496/ 99.6 9.3E-16 3.2E-20 121.9 6.4 105 63-178 171-284 (355)
198 2qpt_A EH domain-containing pr 99.6 1.8E-15 6.2E-20 126.3 7.6 123 11-136 61-234 (550)
199 1yrb_A ATP(GTP)binding protein 99.6 5.7E-14 2E-18 107.0 12.6 111 64-177 109-256 (262)
200 2dby_A GTP-binding protein; GD 99.5 2.2E-14 7.5E-19 113.9 9.0 154 16-169 2-253 (368)
201 2www_A Methylmalonic aciduria 99.5 6E-14 2.1E-18 111.1 11.0 103 64-178 167-279 (349)
202 4fn5_A EF-G 1, elongation fact 99.5 1.2E-12 4.1E-17 112.6 17.0 119 11-133 9-150 (709)
203 2p67_A LAO/AO transport system 99.5 5.8E-14 2E-18 111.0 7.2 104 63-177 148-260 (341)
204 3j25_A Tetracycline resistance 99.5 1.7E-14 5.7E-19 122.6 4.3 116 15-134 2-133 (638)
205 3zvr_A Dynamin-1; hydrolase, D 99.5 1.4E-13 4.7E-18 117.8 9.8 159 11-175 47-275 (772)
206 4a9a_A Ribosome-interacting GT 99.4 5.5E-12 1.9E-16 100.2 15.9 155 13-170 70-240 (376)
207 2qm8_A GTPase/ATPase; G protei 99.4 3.1E-12 1.1E-16 100.8 11.2 104 63-177 147-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 1.2E-12 4.2E-17 101.6 8.5 96 74-172 66-163 (302)
209 2ohf_A Protein OLA1, GTP-bindi 99.3 1.4E-12 4.9E-17 104.0 5.8 90 13-102 20-131 (396)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 7.4E-11 2.5E-15 94.3 15.0 87 13-99 18-127 (392)
211 3l82_B F-box only protein 4; T 99.3 6.1E-12 2.1E-16 91.0 6.2 103 72-177 110-222 (227)
212 3l2o_B F-box only protein 4; s 99.1 1.3E-10 4.5E-15 88.1 7.8 105 71-177 194-307 (312)
213 2qag_B Septin-6, protein NEDD5 98.9 6.1E-09 2.1E-13 83.9 10.3 141 14-159 41-217 (427)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 1.5E-10 5E-15 92.4 0.5 139 16-164 163-317 (369)
215 2j37_W Signal recognition part 98.9 6E-09 2.1E-13 85.8 9.3 152 13-175 99-310 (504)
216 3h2y_A GTPase family protein; 98.9 7.5E-09 2.6E-13 82.4 9.2 97 73-176 55-158 (368)
217 3h2y_A GTPase family protein; 98.9 8.3E-11 2.8E-15 93.7 -2.5 136 16-159 161-311 (368)
218 3sop_A Neuronal-specific septi 98.8 2.6E-08 8.8E-13 76.0 8.1 137 15-156 2-178 (270)
219 1tq4_A IIGP1, interferon-induc 98.7 1.8E-07 6E-12 75.4 12.7 155 15-176 69-251 (413)
220 3ec1_A YQEH GTPase; atnos1, at 98.7 2.1E-08 7.2E-13 79.9 7.2 97 73-176 57-160 (369)
221 1puj_A YLQF, conserved hypothe 98.7 6.9E-08 2.4E-12 74.1 8.8 101 68-178 3-106 (282)
222 3cnl_A YLQF, putative uncharac 98.4 1.2E-07 4.1E-12 72.0 3.2 57 16-76 100-156 (262)
223 1puj_A YLQF, conserved hypothe 98.4 3.7E-07 1.3E-11 70.0 5.1 59 13-75 118-176 (282)
224 3dm5_A SRP54, signal recogniti 98.4 5.2E-07 1.8E-11 73.0 5.9 86 64-159 183-274 (443)
225 2v3c_C SRP54, signal recogniti 98.2 8.1E-06 2.8E-10 66.2 9.7 84 63-157 180-271 (432)
226 1f5n_A Interferon-induced guan 98.2 1.8E-06 6.1E-11 72.5 5.7 65 12-76 35-103 (592)
227 3cnl_A YLQF, putative uncharac 98.2 1E-06 3.5E-11 66.8 3.7 93 71-174 4-97 (262)
228 3szr_A Interferon-induced GTP- 98.1 5.1E-06 1.7E-10 70.4 7.5 23 17-39 47-69 (608)
229 3kl4_A SRP54, signal recogniti 98.1 5.1E-06 1.7E-10 67.2 5.9 87 63-159 179-273 (433)
230 1t9h_A YLOQ, probable GTPase E 97.9 5.1E-06 1.8E-10 64.2 3.6 87 80-169 79-168 (307)
231 1bif_A 6-phosphofructo-2-kinas 97.9 1.4E-06 4.9E-11 71.6 -0.7 101 13-115 37-147 (469)
232 1j8m_F SRP54, signal recogniti 97.9 6.6E-05 2.3E-09 57.9 8.5 91 63-166 180-279 (297)
233 2rcn_A Probable GTPase ENGC; Y 97.8 7.8E-05 2.7E-09 58.8 8.4 85 84-171 127-212 (358)
234 3q5d_A Atlastin-1; G protein, 97.7 6.7E-05 2.3E-09 60.9 6.0 26 13-38 65-90 (447)
235 1ye8_A Protein THEP1, hypothet 97.6 4.8E-05 1.6E-09 54.1 3.4 23 16-38 1-23 (178)
236 1kgd_A CASK, peripheral plasma 97.5 6.9E-05 2.4E-09 53.3 3.2 22 17-38 7-28 (180)
237 1lvg_A Guanylate kinase, GMP k 97.4 7.9E-05 2.7E-09 53.9 3.2 21 17-37 6-26 (198)
238 3lnc_A Guanylate kinase, GMP k 97.4 5.9E-05 2E-09 55.9 2.2 38 1-38 9-51 (231)
239 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 52.5 3.1 21 18-38 4-24 (186)
240 1s96_A Guanylate kinase, GMP k 97.3 0.00013 4.6E-09 53.6 3.2 24 16-39 17-40 (219)
241 1knq_A Gluconate kinase; ALFA/ 97.3 0.00018 6.1E-09 50.7 3.7 23 15-37 8-30 (175)
242 1ex7_A Guanylate kinase; subst 97.3 0.00014 4.8E-09 52.0 3.2 21 18-38 4-24 (186)
243 3tr0_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 52.6 3.2 22 17-38 9-30 (205)
244 2xxa_A Signal recognition part 97.3 0.0053 1.8E-07 49.7 12.7 64 63-133 183-253 (433)
245 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 52.8 3.2 22 17-38 22-43 (207)
246 1zp6_A Hypothetical protein AT 97.3 0.00014 4.9E-09 51.9 3.1 23 16-38 10-32 (191)
247 3ney_A 55 kDa erythrocyte memb 97.3 0.00016 5.3E-09 52.3 3.2 24 15-38 19-42 (197)
248 1z6g_A Guanylate kinase; struc 97.3 0.00016 5.5E-09 53.1 3.2 23 17-39 25-47 (218)
249 3tau_A Guanylate kinase, GMP k 97.2 0.00019 6.5E-09 52.3 3.2 22 17-38 10-31 (208)
250 1htw_A HI0065; nucleotide-bind 97.2 0.00021 7.3E-09 49.7 3.2 23 17-39 35-57 (158)
251 4gp7_A Metallophosphoesterase; 97.2 0.00023 7.9E-09 50.1 3.0 20 17-36 11-30 (171)
252 3c8u_A Fructokinase; YP_612366 97.1 0.00024 8.3E-09 51.7 3.1 25 13-37 20-44 (208)
253 3tif_A Uncharacterized ABC tra 97.1 0.00023 7.8E-09 52.9 2.9 23 17-39 33-55 (235)
254 2qor_A Guanylate kinase; phosp 97.1 0.00028 9.5E-09 51.1 3.2 23 16-38 13-35 (204)
255 2bdt_A BH3686; alpha-beta prot 97.1 0.00029 1E-08 50.3 3.2 21 17-37 4-24 (189)
256 2pcj_A ABC transporter, lipopr 97.1 0.00028 9.5E-09 52.1 2.9 22 17-38 32-53 (224)
257 1kag_A SKI, shikimate kinase I 97.1 0.00035 1.2E-08 49.0 3.2 21 17-37 6-26 (173)
258 2onk_A Molybdate/tungstate ABC 97.1 0.00034 1.1E-08 52.2 3.2 23 17-39 26-48 (240)
259 2j41_A Guanylate kinase; GMP, 97.1 0.00034 1.2E-08 50.5 3.1 24 16-39 7-30 (207)
260 3kb2_A SPBC2 prophage-derived 97.0 0.00037 1.3E-08 48.7 3.1 21 17-37 3-23 (173)
261 3asz_A Uridine kinase; cytidin 97.0 0.00043 1.5E-08 50.3 3.5 23 15-37 6-28 (211)
262 3lw7_A Adenylate kinase relate 97.0 0.00036 1.2E-08 48.8 3.0 20 16-35 2-21 (179)
263 4eun_A Thermoresistant glucoki 97.0 0.00039 1.3E-08 50.2 3.2 23 15-37 29-51 (200)
264 1sgw_A Putative ABC transporte 97.0 0.00036 1.2E-08 51.1 3.0 22 17-38 37-58 (214)
265 3gfo_A Cobalt import ATP-bindi 97.0 0.00035 1.2E-08 53.2 3.0 23 17-39 36-58 (275)
266 1b0u_A Histidine permease; ABC 97.0 0.00035 1.2E-08 52.8 3.0 22 17-38 34-55 (262)
267 1ly1_A Polynucleotide kinase; 97.0 0.0005 1.7E-08 48.4 3.6 22 16-37 3-24 (181)
268 2cdn_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 49.8 3.5 28 10-37 15-42 (201)
269 3fb4_A Adenylate kinase; psych 97.0 0.0004 1.4E-08 50.6 3.2 22 16-37 1-22 (216)
270 2i3b_A HCR-ntpase, human cance 97.0 0.00038 1.3E-08 50.0 2.9 21 17-37 3-23 (189)
271 2cbz_A Multidrug resistance-as 97.0 0.00038 1.3E-08 51.8 2.9 22 17-38 33-54 (237)
272 3dl0_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 50.5 3.2 22 16-37 1-22 (216)
273 2wwf_A Thymidilate kinase, put 97.0 0.00059 2E-08 49.5 3.9 24 14-37 9-32 (212)
274 2bbw_A Adenylate kinase 4, AK4 97.0 0.00047 1.6E-08 51.5 3.4 21 16-36 28-48 (246)
275 3sr0_A Adenylate kinase; phosp 97.0 0.00048 1.7E-08 50.1 3.3 22 16-37 1-22 (206)
276 2rcn_A Probable GTPase ENGC; Y 97.0 0.0004 1.4E-08 54.8 3.1 24 17-40 217-240 (358)
277 1g6h_A High-affinity branched- 97.0 0.0004 1.4E-08 52.3 2.9 23 17-39 35-57 (257)
278 4g1u_C Hemin import ATP-bindin 97.0 0.0004 1.4E-08 52.6 2.9 23 17-39 39-61 (266)
279 2pze_A Cystic fibrosis transme 97.0 0.00043 1.5E-08 51.2 3.0 22 17-38 36-57 (229)
280 2olj_A Amino acid ABC transpor 97.0 0.00043 1.5E-08 52.4 3.0 22 17-38 52-73 (263)
281 2ff7_A Alpha-hemolysin translo 96.9 0.00043 1.5E-08 51.9 2.9 22 17-38 37-58 (247)
282 1qhx_A CPT, protein (chloramph 96.9 0.00051 1.7E-08 48.4 3.2 21 17-37 5-25 (178)
283 1ji0_A ABC transporter; ATP bi 96.9 0.00043 1.5E-08 51.6 2.9 22 17-38 34-55 (240)
284 1mv5_A LMRA, multidrug resista 96.9 0.0005 1.7E-08 51.3 3.2 23 17-39 30-52 (243)
285 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00049 1.7E-08 51.6 3.2 22 17-38 31-52 (250)
286 2qi9_C Vitamin B12 import ATP- 96.9 0.00046 1.6E-08 51.7 3.0 22 17-38 28-49 (249)
287 1vpl_A ABC transporter, ATP-bi 96.9 0.00046 1.6E-08 52.0 3.0 22 17-38 43-64 (256)
288 2eyu_A Twitching motility prot 96.9 0.00051 1.7E-08 51.9 3.2 21 17-37 27-47 (261)
289 3b85_A Phosphate starvation-in 96.9 0.00037 1.3E-08 50.8 2.4 22 17-38 24-45 (208)
290 1np6_A Molybdopterin-guanine d 96.9 0.00055 1.9E-08 48.4 3.2 24 15-38 6-29 (174)
291 2zu0_C Probable ATP-dependent 96.9 0.00051 1.7E-08 52.1 3.2 22 17-38 48-69 (267)
292 3co5_A Putative two-component 96.9 0.0023 8E-08 43.5 6.2 22 16-37 28-49 (143)
293 3vaa_A Shikimate kinase, SK; s 96.9 0.00062 2.1E-08 49.1 3.4 22 16-37 26-47 (199)
294 3t61_A Gluconokinase; PSI-biol 96.9 0.00055 1.9E-08 49.4 3.1 22 16-37 19-40 (202)
295 2if2_A Dephospho-COA kinase; a 96.9 0.0006 2E-08 49.2 3.3 22 16-37 2-23 (204)
296 2v9p_A Replication protein E1; 96.9 0.00059 2E-08 52.7 3.3 22 17-38 128-149 (305)
297 2ghi_A Transport protein; mult 96.9 0.0005 1.7E-08 51.9 2.9 22 17-38 48-69 (260)
298 2ihy_A ABC transporter, ATP-bi 96.9 0.00052 1.8E-08 52.4 3.0 23 17-39 49-71 (279)
299 3ec2_A DNA replication protein 96.9 0.00048 1.7E-08 48.7 2.7 23 15-37 38-60 (180)
300 1y63_A LMAJ004144AAA protein; 96.9 0.00064 2.2E-08 48.4 3.3 25 14-38 9-33 (184)
301 2ixe_A Antigen peptide transpo 96.9 0.00052 1.8E-08 52.1 2.9 22 17-38 47-68 (271)
302 3uie_A Adenylyl-sulfate kinase 96.9 0.00061 2.1E-08 49.1 3.2 23 15-37 25-47 (200)
303 2jaq_A Deoxyguanosine kinase; 96.9 0.00067 2.3E-08 48.8 3.4 21 17-37 2-22 (205)
304 2nq2_C Hypothetical ABC transp 96.9 0.00056 1.9E-08 51.4 2.9 23 17-39 33-55 (253)
305 2ehv_A Hypothetical protein PH 96.9 0.00063 2.1E-08 50.6 3.2 20 17-36 32-51 (251)
306 1nks_A Adenylate kinase; therm 96.8 0.00078 2.7E-08 47.9 3.5 21 17-37 3-23 (194)
307 2yz2_A Putative ABC transporte 96.8 0.00059 2E-08 51.7 2.9 22 17-38 35-56 (266)
308 1e4v_A Adenylate kinase; trans 96.8 0.0007 2.4E-08 49.4 3.3 22 16-37 1-22 (214)
309 2rhm_A Putative kinase; P-loop 96.8 0.00095 3.2E-08 47.6 3.8 23 15-37 5-27 (193)
310 1cke_A CK, MSSA, protein (cyti 96.8 0.00078 2.7E-08 49.4 3.4 22 16-37 6-27 (227)
311 3aez_A Pantothenate kinase; tr 96.8 0.00068 2.3E-08 52.6 3.2 25 13-37 88-112 (312)
312 1jjv_A Dephospho-COA kinase; P 96.8 0.00087 3E-08 48.5 3.6 22 16-37 3-24 (206)
313 3cwq_A Para family chromosome 96.8 0.017 5.9E-07 41.8 10.6 86 63-155 67-153 (209)
314 4a74_A DNA repair and recombin 96.8 0.00069 2.3E-08 49.7 3.1 22 17-38 27-48 (231)
315 3tlx_A Adenylate kinase 2; str 96.8 0.00092 3.2E-08 49.9 3.8 24 14-37 28-51 (243)
316 3cm0_A Adenylate kinase; ATP-b 96.8 0.00096 3.3E-08 47.3 3.6 23 15-37 4-26 (186)
317 2chg_A Replication factor C sm 96.8 0.0024 8.1E-08 46.2 5.8 20 18-37 41-60 (226)
318 1aky_A Adenylate kinase; ATP:A 96.8 0.00085 2.9E-08 49.1 3.4 23 15-37 4-26 (220)
319 1kht_A Adenylate kinase; phosp 96.8 0.00087 3E-08 47.6 3.4 22 16-37 4-25 (192)
320 2pjz_A Hypothetical protein ST 96.8 0.00079 2.7E-08 50.9 3.2 23 17-39 32-54 (263)
321 1u0l_A Probable GTPase ENGC; p 96.8 0.00088 3E-08 51.7 3.5 23 17-39 171-193 (301)
322 2qt1_A Nicotinamide riboside k 96.8 0.0011 3.9E-08 47.9 4.0 27 12-38 18-44 (207)
323 2yv5_A YJEQ protein; hydrolase 96.8 0.00075 2.6E-08 52.1 3.1 20 17-36 167-186 (302)
324 3trf_A Shikimate kinase, SK; a 96.8 0.00087 3E-08 47.5 3.2 22 16-37 6-27 (185)
325 1nn5_A Similar to deoxythymidy 96.8 0.00083 2.9E-08 48.8 3.1 24 14-37 8-31 (215)
326 1qf9_A UMP/CMP kinase, protein 96.7 0.0012 4E-08 47.0 3.8 22 16-37 7-28 (194)
327 3iij_A Coilin-interacting nucl 96.7 0.00085 2.9E-08 47.4 3.0 23 15-37 11-33 (180)
328 1gvn_B Zeta; postsegregational 96.7 0.0011 3.9E-08 50.7 3.8 25 13-37 31-55 (287)
329 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00085 2.9E-08 52.9 3.1 22 18-39 33-54 (359)
330 2f1r_A Molybdopterin-guanine d 96.7 0.00046 1.6E-08 48.7 1.3 22 17-38 4-25 (171)
331 1lw7_A Transcriptional regulat 96.7 0.00078 2.7E-08 53.4 2.8 24 15-38 170-193 (365)
332 1t9h_A YLOQ, probable GTPase E 96.7 0.00024 8.3E-09 54.9 -0.2 23 16-38 174-196 (307)
333 2bbs_A Cystic fibrosis transme 96.7 0.00086 3E-08 51.4 2.8 22 17-38 66-87 (290)
334 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.8E-08 46.2 3.2 22 16-37 1-22 (168)
335 2jeo_A Uridine-cytidine kinase 96.7 0.001 3.5E-08 49.6 3.2 23 15-37 25-47 (245)
336 2vp4_A Deoxynucleoside kinase; 96.7 0.001 3.5E-08 49.1 3.1 26 13-38 18-43 (230)
337 1tev_A UMP-CMP kinase; ploop, 96.7 0.0014 4.7E-08 46.7 3.6 22 16-37 4-25 (196)
338 3tui_C Methionine import ATP-b 96.7 0.001 3.6E-08 52.5 3.2 22 18-39 57-78 (366)
339 2plr_A DTMP kinase, probable t 96.7 0.0014 4.6E-08 47.5 3.7 22 16-37 5-26 (213)
340 1z47_A CYSA, putative ABC-tran 96.7 0.001 3.6E-08 52.4 3.2 23 17-39 43-65 (355)
341 1uf9_A TT1252 protein; P-loop, 96.6 0.0014 4.7E-08 47.1 3.6 25 14-38 7-31 (203)
342 1xjc_A MOBB protein homolog; s 96.6 0.0013 4.3E-08 46.3 3.2 22 16-37 5-26 (169)
343 1via_A Shikimate kinase; struc 96.6 0.00096 3.3E-08 46.9 2.7 21 17-37 6-26 (175)
344 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4E-08 48.6 3.2 22 16-37 1-22 (223)
345 1zd8_A GTP:AMP phosphotransfer 96.6 0.0011 3.8E-08 48.7 3.1 22 16-37 8-29 (227)
346 1uj2_A Uridine-cytidine kinase 96.6 0.0012 4.3E-08 49.4 3.4 27 11-37 18-44 (252)
347 3nh6_A ATP-binding cassette SU 96.6 0.00067 2.3E-08 52.4 1.9 22 17-38 82-103 (306)
348 2yyz_A Sugar ABC transporter, 96.6 0.0011 3.8E-08 52.3 3.2 23 17-39 31-53 (359)
349 2it1_A 362AA long hypothetical 96.6 0.0012 4E-08 52.3 3.2 23 17-39 31-53 (362)
350 3rlf_A Maltose/maltodextrin im 96.6 0.0012 4E-08 52.6 3.2 22 18-39 32-53 (381)
351 1sxj_E Activator 1 40 kDa subu 96.6 0.0097 3.3E-07 46.6 8.6 20 18-37 39-58 (354)
352 3jvv_A Twitching mobility prot 96.6 0.0012 4E-08 52.2 3.1 21 17-37 125-145 (356)
353 1rj9_A FTSY, signal recognitio 96.6 0.0012 4.2E-08 51.0 3.2 23 15-37 102-124 (304)
354 1ukz_A Uridylate kinase; trans 96.6 0.0019 6.6E-08 46.5 4.1 25 13-37 13-37 (203)
355 2kjq_A DNAA-related protein; s 96.6 0.00085 2.9E-08 46.1 2.0 22 17-38 38-59 (149)
356 1zak_A Adenylate kinase; ATP:A 96.6 0.0011 3.6E-08 48.7 2.6 22 16-37 6-27 (222)
357 1odf_A YGR205W, hypothetical 3 96.6 0.0019 6.5E-08 49.5 4.1 25 13-37 29-53 (290)
358 1v43_A Sugar-binding transport 96.6 0.0013 4.4E-08 52.2 3.2 23 17-39 39-61 (372)
359 1g29_1 MALK, maltose transport 96.6 0.0013 4.3E-08 52.3 3.2 23 17-39 31-53 (372)
360 2x8a_A Nuclear valosin-contain 96.6 0.0013 4.4E-08 50.0 3.1 21 18-38 47-67 (274)
361 3tqc_A Pantothenate kinase; bi 96.6 0.0022 7.4E-08 49.9 4.4 26 12-37 89-114 (321)
362 3b9q_A Chloroplast SRP recepto 96.6 0.0014 4.7E-08 50.6 3.2 23 15-37 100-122 (302)
363 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 46.8 3.4 24 15-38 4-27 (204)
364 3umf_A Adenylate kinase; rossm 96.5 0.0015 5.2E-08 47.8 3.2 20 18-37 32-51 (217)
365 3be4_A Adenylate kinase; malar 96.5 0.0016 5.5E-08 47.6 3.3 23 15-37 5-27 (217)
366 2p5t_B PEZT; postsegregational 96.5 0.0015 5.1E-08 49.0 3.2 26 12-37 29-54 (253)
367 2ze6_A Isopentenyl transferase 96.5 0.0015 5.2E-08 49.0 3.2 21 17-37 3-23 (253)
368 1sq5_A Pantothenate kinase; P- 96.5 0.0014 4.8E-08 50.7 3.1 25 13-37 78-102 (308)
369 1ixz_A ATP-dependent metallopr 96.5 0.0015 5.2E-08 48.9 3.2 21 18-38 52-72 (254)
370 3e70_C DPA, signal recognition 96.5 0.0015 5.2E-08 51.0 3.2 90 65-166 213-308 (328)
371 1rz3_A Hypothetical protein rb 96.5 0.0019 6.7E-08 46.5 3.6 25 13-37 20-44 (201)
372 1jbk_A CLPB protein; beta barr 96.5 0.0017 5.8E-08 45.8 3.2 22 16-37 44-65 (195)
373 2gza_A Type IV secretion syste 96.5 0.0014 4.8E-08 51.9 3.0 22 17-38 177-198 (361)
374 2pbr_A DTMP kinase, thymidylat 96.5 0.0019 6.3E-08 46.0 3.3 21 17-37 2-22 (195)
375 2c95_A Adenylate kinase 1; tra 96.5 0.0017 5.9E-08 46.3 3.1 22 16-37 10-31 (196)
376 2ewv_A Twitching motility prot 96.5 0.0016 5.4E-08 51.8 3.1 21 17-37 138-158 (372)
377 2bwj_A Adenylate kinase 5; pho 96.5 0.0015 5.2E-08 46.7 2.8 23 15-37 12-34 (199)
378 2z0h_A DTMP kinase, thymidylat 96.5 0.002 6.7E-08 46.0 3.3 21 17-37 2-22 (197)
379 3d31_A Sulfate/molybdate ABC t 96.4 0.001 3.5E-08 52.3 1.9 23 17-39 28-50 (348)
380 2yvu_A Probable adenylyl-sulfa 96.4 0.0028 9.6E-08 45.0 4.1 23 15-37 13-35 (186)
381 3kta_A Chromosome segregation 96.4 0.0018 6.2E-08 45.8 3.1 21 17-37 28-48 (182)
382 1gtv_A TMK, thymidylate kinase 96.4 0.00066 2.3E-08 49.3 0.8 21 17-37 2-22 (214)
383 3gd7_A Fusion complex of cysti 96.4 0.0017 5.7E-08 51.9 3.1 22 17-38 49-70 (390)
384 1nij_A Hypothetical protein YJ 96.4 0.0013 4.6E-08 51.1 2.5 24 16-39 5-28 (318)
385 4e22_A Cytidylate kinase; P-lo 96.4 0.0019 6.6E-08 48.4 3.3 21 16-36 28-48 (252)
386 1ak2_A Adenylate kinase isoenz 96.4 0.0021 7.2E-08 47.5 3.4 23 15-37 16-38 (233)
387 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0015 5E-08 51.1 2.7 23 17-39 173-195 (330)
388 1e6c_A Shikimate kinase; phosp 96.4 0.0019 6.6E-08 45.1 3.0 21 17-37 4-24 (173)
389 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.002 6.9E-08 47.2 3.2 21 17-37 25-45 (235)
390 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0019 6.5E-08 48.6 3.0 22 16-37 5-26 (260)
391 1p9r_A General secretion pathw 96.4 0.0019 6.5E-08 52.1 3.1 22 17-38 169-190 (418)
392 1in4_A RUVB, holliday junction 96.4 0.002 7E-08 50.3 3.2 21 17-37 53-73 (334)
393 2pez_A Bifunctional 3'-phospho 96.4 0.0023 8E-08 45.1 3.2 23 15-37 5-27 (179)
394 1iy2_A ATP-dependent metallopr 96.4 0.0022 7.4E-08 48.8 3.2 21 18-38 76-96 (278)
395 2iyv_A Shikimate kinase, SK; t 96.4 0.0021 7.2E-08 45.5 3.0 21 17-37 4-24 (184)
396 2og2_A Putative signal recogni 96.3 0.0022 7.5E-08 50.6 3.2 23 15-37 157-179 (359)
397 1oxx_K GLCV, glucose, ABC tran 96.3 0.001 3.5E-08 52.4 1.2 23 17-39 33-55 (353)
398 1vht_A Dephospho-COA kinase; s 96.3 0.0029 9.8E-08 46.1 3.5 23 15-37 4-26 (218)
399 2obl_A ESCN; ATPase, hydrolase 96.3 0.0026 8.8E-08 50.1 3.4 23 17-39 73-95 (347)
400 2vli_A Antibiotic resistance p 96.3 0.0016 5.4E-08 46.0 1.9 22 16-37 6-27 (183)
401 2oap_1 GSPE-2, type II secreti 96.3 0.0023 7.9E-08 53.0 3.1 23 17-39 262-284 (511)
402 2yhs_A FTSY, cell division pro 96.3 0.0025 8.6E-08 52.3 3.2 23 15-37 293-315 (503)
403 4ido_A Atlastin-1; GTPase, GTP 96.2 0.0091 3.1E-07 48.5 6.2 24 13-36 65-88 (457)
404 1cr0_A DNA primase/helicase; R 96.2 0.0026 9E-08 48.7 3.1 22 17-38 37-58 (296)
405 1zuh_A Shikimate kinase; alpha 96.2 0.0032 1.1E-07 43.8 3.3 22 16-37 8-29 (168)
406 3nwj_A ATSK2; P loop, shikimat 96.2 0.0029 9.9E-08 47.4 3.1 22 16-37 49-70 (250)
407 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0026 8.8E-08 52.0 3.1 23 16-38 139-161 (460)
408 2p65_A Hypothetical protein PF 96.2 0.0024 8.1E-08 44.9 2.5 22 16-37 44-65 (187)
409 3ld9_A DTMP kinase, thymidylat 96.2 0.004 1.4E-07 45.8 3.8 35 1-37 9-43 (223)
410 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0033 1.1E-07 43.1 3.2 19 18-36 26-44 (149)
411 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0032 1.1E-07 49.9 3.5 24 12-35 30-53 (362)
412 1m7g_A Adenylylsulfate kinase; 96.2 0.0031 1E-07 45.8 3.2 23 15-37 25-47 (211)
413 2f6r_A COA synthase, bifunctio 96.2 0.0031 1.1E-07 48.1 3.3 25 13-37 73-97 (281)
414 1lv7_A FTSH; alpha/beta domain 96.2 0.003 1E-07 47.3 3.2 22 16-37 46-67 (257)
415 3r20_A Cytidylate kinase; stru 96.2 0.0032 1.1E-07 46.6 3.2 24 14-37 8-31 (233)
416 2cvh_A DNA repair and recombin 96.2 0.0032 1.1E-07 45.8 3.2 21 17-37 22-42 (220)
417 3bos_A Putative DNA replicatio 96.2 0.0031 1.1E-07 46.3 3.2 23 15-37 52-74 (242)
418 1n0w_A DNA repair protein RAD5 96.2 0.0032 1.1E-07 46.5 3.2 22 17-38 26-47 (243)
419 3u61_B DNA polymerase accessor 96.2 0.078 2.7E-06 40.9 11.2 21 18-38 51-71 (324)
420 4eaq_A DTMP kinase, thymidylat 96.1 0.0045 1.6E-07 45.7 3.9 24 14-37 25-48 (229)
421 1p5z_B DCK, deoxycytidine kina 96.1 0.002 7E-08 48.5 2.1 26 12-37 21-46 (263)
422 2w58_A DNAI, primosome compone 96.1 0.0034 1.2E-07 45.1 3.2 22 16-37 55-76 (202)
423 1ltq_A Polynucleotide kinase; 96.0 0.0046 1.6E-07 47.4 3.6 22 16-37 3-24 (301)
424 3euj_A Chromosome partition pr 96.0 0.0038 1.3E-07 51.2 3.2 21 17-37 31-51 (483)
425 3v9p_A DTMP kinase, thymidylat 96.0 0.0034 1.1E-07 46.3 2.6 24 14-37 24-47 (227)
426 2dpy_A FLII, flagellum-specifi 96.0 0.0042 1.4E-07 50.4 3.4 23 17-39 159-181 (438)
427 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0043 1.5E-07 51.8 3.4 23 17-39 49-71 (538)
428 3uc9_A Increased recombination 96.0 0.017 5.9E-07 42.3 6.1 28 12-39 26-53 (233)
429 1svm_A Large T antigen; AAA+ f 96.0 0.0042 1.5E-07 49.4 3.2 22 16-37 170-191 (377)
430 3n70_A Transport activator; si 95.9 0.0051 1.7E-07 41.8 3.2 24 16-39 25-48 (145)
431 3ozx_A RNAse L inhibitor; ATP 95.9 0.0039 1.3E-07 52.0 3.0 23 17-39 27-49 (538)
432 3pfi_A Holliday junction ATP-d 95.9 0.022 7.7E-07 44.2 7.2 23 16-38 56-78 (338)
433 2grj_A Dephospho-COA kinase; T 95.9 0.0056 1.9E-07 43.9 3.4 24 14-37 11-34 (192)
434 1njg_A DNA polymerase III subu 95.9 0.0047 1.6E-07 45.2 3.1 21 17-37 47-67 (250)
435 1tue_A Replication protein E1; 95.9 0.004 1.4E-07 45.1 2.5 21 17-37 60-80 (212)
436 3j16_B RLI1P; ribosome recycli 95.9 0.0063 2.1E-07 51.5 4.0 23 17-39 105-127 (608)
437 3b60_A Lipid A export ATP-bind 95.9 0.0045 1.6E-07 52.2 3.1 22 17-38 371-392 (582)
438 1q3t_A Cytidylate kinase; nucl 95.9 0.0058 2E-07 45.2 3.4 27 11-37 12-38 (236)
439 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.005 1.7E-07 48.8 3.2 19 18-36 26-44 (365)
440 3foz_A TRNA delta(2)-isopenten 95.8 0.0068 2.3E-07 46.7 3.7 22 16-37 11-32 (316)
441 3b9p_A CG5977-PA, isoform A; A 95.8 0.0052 1.8E-07 47.0 3.1 23 15-37 54-76 (297)
442 1nlf_A Regulatory protein REPA 95.8 0.0052 1.8E-07 46.6 3.1 21 17-37 32-52 (279)
443 3b5x_A Lipid A export ATP-bind 95.8 0.0052 1.8E-07 51.8 3.2 23 17-39 371-393 (582)
444 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0058 2E-07 45.6 3.2 23 15-37 39-61 (262)
445 3h4m_A Proteasome-activating n 95.8 0.0058 2E-07 46.4 3.1 24 15-38 51-74 (285)
446 3zvl_A Bifunctional polynucleo 95.8 0.0055 1.9E-07 49.4 3.1 24 14-37 257-280 (416)
447 3t15_A Ribulose bisphosphate c 95.7 0.0073 2.5E-07 46.3 3.6 25 13-37 34-58 (293)
448 3cf0_A Transitional endoplasmi 95.7 0.0061 2.1E-07 46.9 3.1 23 16-38 50-72 (301)
449 2px0_A Flagellar biosynthesis 95.7 0.0061 2.1E-07 46.8 3.1 86 63-158 182-273 (296)
450 1l8q_A Chromosomal replication 95.7 0.0061 2.1E-07 47.3 3.1 22 16-37 38-59 (324)
451 4dzz_A Plasmid partitioning pr 95.7 0.033 1.1E-06 39.8 6.8 84 64-154 76-161 (206)
452 3gmt_A Adenylate kinase; ssgci 95.7 0.0075 2.6E-07 44.5 3.4 24 14-37 7-30 (230)
453 3syl_A Protein CBBX; photosynt 95.7 0.0084 2.9E-07 46.0 3.7 24 13-36 65-88 (309)
454 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0072 2.5E-07 50.4 3.4 23 17-39 314-336 (538)
455 3bk7_A ABC transporter ATP-bin 95.6 0.0065 2.2E-07 51.4 3.2 23 17-39 384-406 (607)
456 3bk7_A ABC transporter ATP-bin 95.6 0.0089 3.1E-07 50.6 4.0 23 17-39 119-141 (607)
457 3ozx_A RNAse L inhibitor; ATP 95.6 0.0062 2.1E-07 50.8 3.0 23 17-39 296-318 (538)
458 3ake_A Cytidylate kinase; CMP 95.6 0.0076 2.6E-07 43.3 3.2 21 17-37 4-24 (208)
459 2qmh_A HPR kinase/phosphorylas 95.6 0.0078 2.7E-07 43.3 3.0 24 16-39 35-58 (205)
460 2dr3_A UPF0273 protein PH0284; 95.6 0.0072 2.5E-07 44.6 3.1 21 17-37 25-45 (247)
461 2qby_A CDC6 homolog 1, cell di 95.6 0.0069 2.4E-07 47.8 3.1 22 16-37 46-67 (386)
462 2yl4_A ATP-binding cassette SU 95.6 0.0048 1.6E-07 52.2 2.2 22 17-38 372-393 (595)
463 1vma_A Cell division protein F 95.6 0.008 2.7E-07 46.4 3.2 87 64-160 187-285 (306)
464 3qf4_B Uncharacterized ABC tra 95.6 0.0054 1.8E-07 51.9 2.4 22 17-38 383-404 (598)
465 4fcw_A Chaperone protein CLPB; 95.5 0.012 4.1E-07 45.2 4.2 23 15-37 47-69 (311)
466 3crm_A TRNA delta(2)-isopenten 95.5 0.0083 2.8E-07 46.6 3.2 22 16-37 6-27 (323)
467 3qks_A DNA double-strand break 95.5 0.0084 2.9E-07 43.3 3.0 19 18-36 26-44 (203)
468 1pzn_A RAD51, DNA repair and r 95.5 0.0079 2.7E-07 47.4 3.1 22 17-38 133-154 (349)
469 3j16_B RLI1P; ribosome recycli 95.5 0.008 2.8E-07 50.8 3.2 22 18-39 381-402 (608)
470 4a82_A Cystic fibrosis transme 95.5 0.0044 1.5E-07 52.2 1.6 22 17-38 369-390 (578)
471 1ofh_A ATP-dependent HSL prote 95.5 0.0089 3E-07 45.8 3.2 22 16-37 51-72 (310)
472 1fnn_A CDC6P, cell division co 95.5 0.0086 2.9E-07 47.4 3.2 22 17-38 46-67 (389)
473 1sxj_C Activator 1 40 kDa subu 95.4 0.0086 3E-07 46.8 3.1 22 17-38 48-69 (340)
474 3d3q_A TRNA delta(2)-isopenten 95.4 0.0091 3.1E-07 46.7 3.2 22 16-37 8-29 (340)
475 1d2n_A N-ethylmaleimide-sensit 95.4 0.014 4.7E-07 44.1 4.1 26 13-38 62-87 (272)
476 2ga8_A Hypothetical 39.9 kDa p 95.4 0.011 3.9E-07 46.4 3.7 22 15-36 24-45 (359)
477 3qf4_A ABC transporter, ATP-bi 95.4 0.0061 2.1E-07 51.4 2.1 22 17-38 371-392 (587)
478 3exa_A TRNA delta(2)-isopenten 95.3 0.011 3.9E-07 45.6 3.3 22 17-38 5-26 (322)
479 3a8t_A Adenylate isopentenyltr 95.3 0.011 3.8E-07 46.1 3.3 21 17-37 42-62 (339)
480 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.01 3.4E-07 46.2 3.1 23 16-38 46-68 (322)
481 3tqf_A HPR(Ser) kinase; transf 95.3 0.014 4.9E-07 40.9 3.4 24 16-39 17-40 (181)
482 2iw3_A Elongation factor 3A; a 95.2 0.013 4.4E-07 52.1 3.8 24 17-40 463-486 (986)
483 1c9k_A COBU, adenosylcobinamid 95.2 0.013 4.4E-07 41.5 3.1 21 18-38 2-22 (180)
484 1sxj_D Activator 1 41 kDa subu 95.2 0.012 4E-07 46.0 3.2 20 18-37 61-80 (353)
485 2v1u_A Cell division control p 95.2 0.01 3.5E-07 46.9 2.8 22 16-37 45-66 (387)
486 2ocp_A DGK, deoxyguanosine kin 95.2 0.015 5.1E-07 43.1 3.5 22 16-37 3-24 (241)
487 1tf7_A KAIC; homohexamer, hexa 95.2 0.011 3.8E-07 49.2 3.0 19 18-36 42-60 (525)
488 2qen_A Walker-type ATPase; unk 95.2 0.013 4.3E-07 45.6 3.2 22 17-38 33-54 (350)
489 3eie_A Vacuolar protein sortin 95.1 0.012 4.2E-07 45.6 3.1 23 15-37 51-73 (322)
490 4b4t_K 26S protease regulatory 95.1 0.013 4.4E-07 47.4 3.2 22 16-37 207-228 (428)
491 3uk6_A RUVB-like 2; hexameric 95.1 0.012 4.3E-07 46.2 3.1 22 16-37 71-92 (368)
492 3cr8_A Sulfate adenylyltranfer 95.1 0.0073 2.5E-07 50.5 1.8 25 14-38 368-392 (552)
493 2r62_A Cell division protease 95.1 0.0059 2E-07 45.9 1.1 20 18-37 47-66 (268)
494 2qgz_A Helicase loader, putati 95.1 0.015 5.2E-07 44.8 3.4 23 15-37 152-174 (308)
495 4b4t_M 26S protease regulatory 95.1 0.014 4.7E-07 47.3 3.2 23 15-37 215-237 (434)
496 4edh_A DTMP kinase, thymidylat 95.1 0.015 5.1E-07 42.4 3.2 23 15-37 6-28 (213)
497 3qkt_A DNA double-strand break 95.0 0.014 4.8E-07 45.7 3.2 18 19-36 27-44 (339)
498 2fna_A Conserved hypothetical 95.0 0.014 4.6E-07 45.5 3.1 22 17-38 32-53 (357)
499 2z4s_A Chromosomal replication 95.0 0.014 4.7E-07 47.5 3.1 22 16-37 131-152 (440)
500 3pxg_A Negative regulator of g 95.0 0.014 4.7E-07 47.9 3.1 22 16-37 202-223 (468)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.3e-43 Score=263.73 Aligned_cols=167 Identities=35% Similarity=0.642 Sum_probs=146.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
.+.+||+|+|++|||||||+++|+.+.|...+.+|.+.++..+.+.+++..+.+.||||+|+++|..++..|++.++++|
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 45689999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
+|||++++++|+.+..|+..+.....+++|++||+||+|+.+.+.+..+++++++..++++|++|||++|.||+++|..|
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988877899999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy1169 173 AKKIYQN 179 (218)
Q Consensus 173 ~~~~~~~ 179 (218)
++.+...
T Consensus 171 ~~~i~~~ 177 (216)
T 4dkx_A 171 AAALPGM 177 (216)
T ss_dssp HHHC---
T ss_pred HHHHHhh
Confidence 9887653
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1e-37 Score=230.92 Aligned_cols=175 Identities=45% Similarity=0.866 Sum_probs=160.0
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
.++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 46788999999999999999999999999888888888888888888888899999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988877767899999999999988777888889999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcc
Q psy1169 171 ETAKKIYQNIKDGKL 185 (218)
Q Consensus 171 ~i~~~~~~~~~~~~~ 185 (218)
+|.+.+.+.......
T Consensus 164 ~l~~~i~~~~~~~~~ 178 (206)
T 2bcg_Y 164 TMARQIKESMSQQNL 178 (206)
T ss_dssp HHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhhccc
Confidence 999999887655443
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=4.4e-36 Score=222.13 Aligned_cols=172 Identities=36% Similarity=0.616 Sum_probs=150.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 35678999999999999999999999999888888888888888888888888999999999999999989999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCCCccccHHHHHHHHH-hCCCcEEEeccCCCCCH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-ENDLIFVEASAMTGENV 165 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i 165 (218)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999887766543 478999999999997 45566678888887 67889999999999999
Q ss_pred HHHHHHHHHHHHHhhhcC
Q psy1169 166 EQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~ 183 (218)
+++|++|.+.+.+.....
T Consensus 163 ~~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999998765433
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-36 Score=225.01 Aligned_cols=179 Identities=50% Similarity=0.865 Sum_probs=147.8
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
.+.++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+
T Consensus 7 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (223)
T 3cpj_B 7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA 86 (223)
T ss_dssp ---CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence 34567889999999999999999999999998888888888888888888888889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166 (223)
T ss_dssp CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888776668999999999999877777778899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcccc
Q psy1169 169 FLETAKKIYQNIKDGKLNA 187 (218)
Q Consensus 169 ~~~i~~~~~~~~~~~~~~~ 187 (218)
|++|.+.+.+......+..
T Consensus 167 ~~~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 167 FEELINTIYQKVSKHQMDL 185 (223)
T ss_dssp HHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHhhhcccCc
Confidence 9999999988876665543
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=7.4e-35 Score=213.67 Aligned_cols=176 Identities=45% Similarity=0.815 Sum_probs=160.0
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
+.+..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence 44556789999999999999999999999999988888898888888888889999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 99999999999999999999999998887777899999999999988888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy1169 168 AFLETAKKIYQNIKDG 183 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~~ 183 (218)
+|++|.+.+.+.....
T Consensus 169 l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 169 SFMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998865433
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=215.86 Aligned_cols=175 Identities=42% Similarity=0.780 Sum_probs=147.7
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169 7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86 (218)
Q Consensus 7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (218)
..++.+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++
T Consensus 21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (201)
T 2hup_A 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR 100 (201)
T ss_dssp -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence 34556788899999999999999999999999988888888888887888888888899999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENV 165 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i 165 (218)
.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...++ +++++||+++.|+
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 999999999999999999999999988877667899999999999987777888889999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy1169 166 EQAFLETAKKIYQNIK 181 (218)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (218)
+++|++|.+.+.+...
T Consensus 181 ~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 181 EEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999977543
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=9.3e-35 Score=211.46 Aligned_cols=180 Identities=61% Similarity=1.045 Sum_probs=160.8
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
|...+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 44556788999999999999999999999999888888888888888888888888999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+...++..++...+++++++||+++.|+++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 99999999999999999999999888877667899999999999977677777889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcccc
Q psy1169 168 AFLETAKKIYQNIKDGKLNA 187 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~~~ 187 (218)
+|+++.+.+.+.........
T Consensus 163 l~~~l~~~~~~~~~~~~~~~ 182 (186)
T 2bme_A 163 AFVQCARKILNKIESGELDP 182 (186)
T ss_dssp HHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHhhhcCCCc
Confidence 99999999998776655433
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.1e-35 Score=215.30 Aligned_cols=173 Identities=42% Similarity=0.814 Sum_probs=157.2
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
..++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 35678899999999999999999999999988888888888888888888988999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
++|+|||++++.+|+.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766789999999999998777777788888988889999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q psy1169 170 LETAKKIYQNIKD 182 (218)
Q Consensus 170 ~~i~~~~~~~~~~ 182 (218)
+++.+.+.+....
T Consensus 181 ~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 181 LDLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999876543
No 9
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=7.6e-35 Score=215.23 Aligned_cols=169 Identities=33% Similarity=0.530 Sum_probs=150.0
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
+....+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 445679999999999999999999999988887777776665 4556678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
+|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988877653 479999999999998777788888999998889999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy1169 170 LETAKKIYQNI 180 (218)
Q Consensus 170 ~~i~~~~~~~~ 180 (218)
++|++.+.++.
T Consensus 169 ~~l~~~i~~~~ 179 (206)
T 2bov_A 169 FDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99999998753
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.2e-34 Score=212.07 Aligned_cols=176 Identities=63% Similarity=1.027 Sum_probs=155.2
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
.+..+...+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 44456888999999999999999999999999888877888888888888888889999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999988877667899999999999977777777889999998899999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy1169 168 AFLETAKKIYQNIKDG 183 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~~ 183 (218)
+|++|.+.+.++....
T Consensus 174 l~~~l~~~i~~~~~~~ 189 (191)
T 2a5j_A 174 AFINTAKEIYRKIQQG 189 (191)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998876543
No 11
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=214.84 Aligned_cols=180 Identities=60% Similarity=1.051 Sum_probs=149.3
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169 7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86 (218)
Q Consensus 7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (218)
...+.++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 96 (200)
T 2o52_A 17 RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 96 (200)
T ss_dssp -----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence 34455788999999999999999999999998888888888888888888888888899999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+...++..++...+++++++||+++.|++
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 176 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999998887766789999999999997767777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCccc
Q psy1169 167 QAFLETAKKIYQNIKDGKLN 186 (218)
Q Consensus 167 ~~~~~i~~~~~~~~~~~~~~ 186 (218)
++|++|++.+.++.......
T Consensus 177 ~l~~~l~~~i~~~~~~~~~~ 196 (200)
T 2o52_A 177 EAFLKCARTILNKIDSGELD 196 (200)
T ss_dssp HHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 99999999998877665543
No 12
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.2e-35 Score=213.49 Aligned_cols=173 Identities=41% Similarity=0.803 Sum_probs=127.9
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
++.+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 2 ~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 81 (183)
T 2fu5_C 2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 81 (183)
T ss_dssp -CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcC
Confidence 34567889999999999999999999998888777778888888777888888899999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 82 MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 (183)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888776678999999999999877778888899999988999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy1169 169 FLETAKKIYQNIK 181 (218)
Q Consensus 169 ~~~i~~~~~~~~~ 181 (218)
|++|.+.+.+...
T Consensus 162 ~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 162 FFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987644
No 13
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.6e-34 Score=207.57 Aligned_cols=170 Identities=88% Similarity=1.358 Sum_probs=154.2
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
....++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 34567889999999999999999999999998888888888888888888888899999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|++++
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888877678999999999999777777788899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 169 FLETAKKIYQ 178 (218)
Q Consensus 169 ~~~i~~~~~~ 178 (218)
|+++.+.+.+
T Consensus 169 ~~~l~~~i~~ 178 (179)
T 1z0f_A 169 FLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 14
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=210.23 Aligned_cols=175 Identities=45% Similarity=0.813 Sum_probs=157.2
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169 7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86 (218)
Q Consensus 7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (218)
...+.++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.|||++|.+.+..++..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34456788899999999999999999999999988888888888888888888888999999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||+++.|++
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999988877666789999999999998777777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy1169 167 QAFLETAKKIYQNIK 181 (218)
Q Consensus 167 ~~~~~i~~~~~~~~~ 181 (218)
++|++|.+.+.++..
T Consensus 177 ~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 177 LAFETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=6.2e-34 Score=210.06 Aligned_cols=174 Identities=37% Similarity=0.703 Sum_probs=158.6
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
..+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+..++..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 34578899999999999999999999999988888888888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999998887766689999999999998877788888999999889999999999999999999
Q ss_pred HHHHHHHHHhhhcC
Q psy1169 170 LETAKKIYQNIKDG 183 (218)
Q Consensus 170 ~~i~~~~~~~~~~~ 183 (218)
++|.+.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 163 ERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998876554
No 16
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.4e-35 Score=213.85 Aligned_cols=174 Identities=38% Similarity=0.695 Sum_probs=158.3
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
.+..+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 34457889999999999999999999999998888877888888878888888888999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999999998887767899999999999987778888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy1169 168 AFLETAKKIYQNIK 181 (218)
Q Consensus 168 ~~~~i~~~~~~~~~ 181 (218)
+|++|++.+.+...
T Consensus 176 l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 176 AFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987654
No 17
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=7.1e-34 Score=207.54 Aligned_cols=172 Identities=37% Similarity=0.713 Sum_probs=155.7
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
+...++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++.+
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 95 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA 95 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence 33467789999999999999999999999998888888888888777887888899999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|++++
T Consensus 96 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 96 MGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV 175 (189)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999888776668999999999999877777778889999988999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy1169 169 FLETAKKIYQNI 180 (218)
Q Consensus 169 ~~~i~~~~~~~~ 180 (218)
|++|.+.+.++.
T Consensus 176 ~~~l~~~i~~~~ 187 (189)
T 2gf9_A 176 FERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=205.96 Aligned_cols=174 Identities=41% Similarity=0.687 Sum_probs=153.7
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
|...+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34466789999999999999999999999998888888888888888888889999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+|++|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999999999998887655 5799999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q psy1169 168 AFLETAKKIYQNIKD 182 (218)
Q Consensus 168 ~~~~i~~~~~~~~~~ 182 (218)
+|+++.+.+.+....
T Consensus 161 l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 161 MFNCITELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999876543
No 19
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=208.63 Aligned_cols=172 Identities=39% Similarity=0.772 Sum_probs=147.0
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
.+.+.+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 34456788999999999999999999999988887777888888888888888889999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVE 166 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~ 166 (218)
+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++.. .+++++++||+++.|++
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 99999999999999999999999888877767899999999999987777777888888887 48899999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
++|++|.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.7e-33 Score=203.89 Aligned_cols=168 Identities=38% Similarity=0.699 Sum_probs=152.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
.....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34677999999999999999999999999888888888888878888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
+|+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999988887767899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1169 171 ETAKKIYQ 178 (218)
Q Consensus 171 ~i~~~~~~ 178 (218)
+|.+.+.+
T Consensus 168 ~l~~~~~~ 175 (181)
T 2efe_B 168 EIARRLPR 175 (181)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99877644
No 21
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.3e-33 Score=203.67 Aligned_cols=170 Identities=30% Similarity=0.473 Sum_probs=151.7
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
++......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 89 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhc
Confidence 344556789999999999999999999999988888888887777 6667788899999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC-CCCCH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM-TGENV 165 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~i 165 (218)
+|++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++++++||+ ++.|+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence 99999999999999999999998887654 34679999999999998888888899999999999999999999 99999
Q ss_pred HHHHHHHHHHHHH
Q psy1169 166 EQAFLETAKKIYQ 178 (218)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (218)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.3e-34 Score=204.88 Aligned_cols=167 Identities=34% Similarity=0.675 Sum_probs=145.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999988888888888888777888888899999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998887766567999999999999877777888899999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1169 172 TAKKIYQ 178 (218)
Q Consensus 172 i~~~~~~ 178 (218)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.3e-33 Score=202.15 Aligned_cols=165 Identities=39% Similarity=0.707 Sum_probs=150.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35679999999999999999999999998888888888888788888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776678999999999999776777778889999999999999999999999999999
Q ss_pred HHHHH
Q psy1169 172 TAKKI 176 (218)
Q Consensus 172 i~~~~ 176 (218)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98765
No 24
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.8e-34 Score=207.61 Aligned_cols=171 Identities=37% Similarity=0.606 Sum_probs=151.6
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
+.+.++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 44556788999999999999999999999999888888888888878888788888999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|+++
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 99999999999999999999999988877667899999999999976677778889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 168 AFLETAKKIYQ 178 (218)
Q Consensus 168 ~~~~i~~~~~~ 178 (218)
+|++|.+.+.+
T Consensus 176 l~~~l~~~i~~ 186 (192)
T 2fg5_A 176 LFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHHh
Confidence 99999876643
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.3e-33 Score=202.27 Aligned_cols=166 Identities=45% Similarity=0.821 Sum_probs=144.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56899999999999999999999999888888888888877788788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....+++..++...+++++++||+++.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999888877678999999999999 4555667888889888899999999999999999999999
Q ss_pred HHHHHhh
Q psy1169 174 KKIYQNI 180 (218)
Q Consensus 174 ~~~~~~~ 180 (218)
+.+.++.
T Consensus 161 ~~~~~~~ 167 (170)
T 1g16_A 161 KLIQEKI 167 (170)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9987653
No 26
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.3e-33 Score=204.32 Aligned_cols=173 Identities=35% Similarity=0.661 Sum_probs=153.7
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE-EEEEEECCe---------EEEEEEeeCcchhhhhh
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG-TRIIEVHGE---------KIKLQIWDTAGQERFRA 79 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~ 79 (218)
..++..+||+|+|++|+|||||+++|++..+...+.++.+.++. ...+.+++. .+.+.+||+||++.+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 35678899999999999999999999999888888888888876 556666655 78999999999999999
Q ss_pred hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEec
Q psy1169 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS 158 (218)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (218)
.+..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++|
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999999999999999988877654 6899999999999977677777888999988899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhc
Q psy1169 159 AMTGENVEQAFLETAKKIYQNIKD 182 (218)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~~~ 182 (218)
|+++.|++++|++|.+.+.++...
T Consensus 166 a~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999876543
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-33 Score=201.54 Aligned_cols=170 Identities=41% Similarity=0.785 Sum_probs=145.3
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
+.++..+||+|+|++|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34578899999999999999999999998875 46677888888777778888899999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888776678999999999999887777888888999888999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1169 169 FLETAKKIYQN 179 (218)
Q Consensus 169 ~~~i~~~~~~~ 179 (218)
|+++.+.+.+.
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 28
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=8.8e-34 Score=204.81 Aligned_cols=174 Identities=36% Similarity=0.633 Sum_probs=150.2
Q ss_pred cccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhH
Q psy1169 3 TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR 82 (218)
Q Consensus 3 ~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (218)
+|.......+...+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+.
T Consensus 2 ~m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 81 (179)
T 2y8e_A 2 TMSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 81 (179)
T ss_dssp ----------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSH
T ss_pred ccccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHH
Confidence 45544333345669999999999999999999999998888888888888888888898899999999999999999999
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
.+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 161 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999999999999999999998888766678999999999999877777778888888888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKKI 176 (218)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (218)
.|++++|++|.+.+
T Consensus 162 ~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 162 YNVKQLFRRVAAAL 175 (179)
T ss_dssp BSHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.8e-33 Score=202.52 Aligned_cols=171 Identities=33% Similarity=0.509 Sum_probs=151.2
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
..+....+||+|+|++|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 345567899999999999999999999999888888888777765 5667788889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
|++|+|||+++..++..+..|+..+... ...+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999999998887443 346899999999999987777878889999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy1169 168 AFLETAKKIYQNI 180 (218)
Q Consensus 168 ~~~~i~~~~~~~~ 180 (218)
+|++|.+.+.+..
T Consensus 162 l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 162 AFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.6e-33 Score=198.98 Aligned_cols=165 Identities=40% Similarity=0.704 Sum_probs=151.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
+.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||.+.+......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|+|||++++.+++.+..|+..+.....+..|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999888876678999999999999877777778889999999999999999999999999999
Q ss_pred HHHHH
Q psy1169 172 TAKKI 176 (218)
Q Consensus 172 i~~~~ 176 (218)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 31
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-33 Score=207.10 Aligned_cols=173 Identities=43% Similarity=0.803 Sum_probs=152.4
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
.+.+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34567899999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..+++..++...+++++++||+++.|++++|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999888776668999999999999 455566778888888888999999999999999999
Q ss_pred HHHHHHHHHhhhcC
Q psy1169 170 LETAKKIYQNIKDG 183 (218)
Q Consensus 170 ~~i~~~~~~~~~~~ 183 (218)
++|.+.+.+.....
T Consensus 174 ~~l~~~~~~~~~~~ 187 (213)
T 3cph_A 174 FTLAKLIQEKIDSN 187 (213)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998876543
No 32
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=9.1e-34 Score=208.65 Aligned_cols=171 Identities=34% Similarity=0.637 Sum_probs=138.8
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
.+...+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||.+.+..++..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 44456778999999999999999999999998887788888888878888889899999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC------CCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE------GSRDVRYDEAKKFAEENDLIFVEASAMT 161 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (218)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..+++..++...+++++++||++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 9999999999999999999999988887766689999999999995 3566777888889988899999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKIYQ 178 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (218)
+.|++++|.+|++.+.+
T Consensus 181 g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 33
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.8e-33 Score=209.67 Aligned_cols=174 Identities=36% Similarity=0.693 Sum_probs=151.6
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe----------EEEEEEeeCcchhhh
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------KIKLQIWDTAGQERF 77 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~ 77 (218)
..+.+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.|||++|++.+
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence 4456788999999999999999999999998887777777777777777766655 789999999999999
Q ss_pred hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEE
Q psy1169 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVE 156 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (218)
...+..+++.+|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++.+++...++++++
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE 177 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEE
Confidence 99999999999999999999999999999999887765443 57999999999999877777788899999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169 157 ASAMTGENVEQAFLETAKKIYQNIK 181 (218)
Q Consensus 157 ~S~~~~~~i~~~~~~i~~~~~~~~~ 181 (218)
+||+++.|++++|++|.+.+.++..
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987654
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.9e-33 Score=202.73 Aligned_cols=168 Identities=30% Similarity=0.432 Sum_probs=150.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
+....+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 446789999999999999999999999888888888888777 6667788899999999999999998889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 999999999999999999998876654 3579999999999998888888899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy1169 170 LETAKKIYQN 179 (218)
Q Consensus 170 ~~i~~~~~~~ 179 (218)
+++++.+.+.
T Consensus 161 ~~l~~~~~~~ 170 (181)
T 3t5g_A 161 RRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 35
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=201.78 Aligned_cols=173 Identities=47% Similarity=0.780 Sum_probs=153.3
Q ss_pred CCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhh
Q psy1169 6 SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY 85 (218)
Q Consensus 6 ~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (218)
..++......+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..++
T Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 85 (195)
T 1x3s_A 6 SGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 85 (195)
T ss_dssp ---CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH
T ss_pred CCcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHh
Confidence 34556667789999999999999999999999998888888888888888888898999999999999999999999999
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
+.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++...+++++++||+++.|
T Consensus 86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDG 164 (195)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 999999999999999999999999988876542 579999999999994 455667888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1169 165 VEQAFLETAKKIYQN 179 (218)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (218)
++++|++|.+.+.+.
T Consensus 165 i~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 165 VQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
No 36
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.3e-32 Score=198.55 Aligned_cols=167 Identities=36% Similarity=0.671 Sum_probs=146.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
.....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCCCccccHHHHHHHHH-hCCCcEEEeccCCCCCH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-ENDLIFVEASAMTGENV 165 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i 165 (218)
+|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||+++.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988776543 678999999999997 55667788888888 57889999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1169 166 EQAFLETAKKIYQ 178 (218)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (218)
+++|+++++.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 37
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-33 Score=200.55 Aligned_cols=163 Identities=38% Similarity=0.690 Sum_probs=148.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999999888888888888888888888899999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC---ccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS---RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
|||++++.+++.+..|+..+......+.|+++|+||+|+... +.+..++...++...+++++++||+++.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998888776678999999999999655 56777888888888899999999999999999999
Q ss_pred HHHHHH
Q psy1169 171 ETAKKI 176 (218)
Q Consensus 171 ~i~~~~ 176 (218)
++.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 988654
No 38
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=3.9e-33 Score=203.61 Aligned_cols=168 Identities=40% Similarity=0.712 Sum_probs=147.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-hhhHhhhccCC
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAA 89 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d 89 (218)
.....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|.+.+. .++..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999999888888888888888888888888999999999999988 78899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC---CCH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG---ENV 165 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~~i 165 (218)
++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999998887765 468999999999999877777888899999999999999999999 999
Q ss_pred HHHHHHHHHHHHH
Q psy1169 166 EQAFLETAKKIYQ 178 (218)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (218)
+++|.+|.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887643
No 39
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.1e-33 Score=200.85 Aligned_cols=166 Identities=34% Similarity=0.572 Sum_probs=150.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999998887665 67999999999999876777778888999888999999999999999999999
Q ss_pred HHHHHHH
Q psy1169 172 TAKKIYQ 178 (218)
Q Consensus 172 i~~~~~~ 178 (218)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 40
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-33 Score=206.30 Aligned_cols=171 Identities=26% Similarity=0.379 Sum_probs=138.8
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhhhhHhh
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAVTRSY 84 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~ 84 (218)
..+.....+||+|+|++|||||||+++|.+.. +...+ ++++.++....+.+++..+.+.+|||+|.+. +..+...+
T Consensus 30 ~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~ 108 (211)
T 2g3y_A 30 SSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC 108 (211)
T ss_dssp -----CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCC
T ss_pred ccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHH
Confidence 34456678999999999999999999998643 33333 3456666667777889999999999999876 45567778
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE 163 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (218)
++.+|++|+|||+++..+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++.+.++...+++++++||++|.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 899999999999999999999999988776542 3579999999999997767777788888888888999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy1169 164 NVEQAFLETAKKIYQN 179 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (218)
|++++|+++++.+...
T Consensus 189 ~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 189 NVKELFEGIVRQVRLR 204 (211)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 41
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=204.73 Aligned_cols=169 Identities=24% Similarity=0.309 Sum_probs=142.2
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-hhHhhhccCC
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGAA 89 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d 89 (218)
+....+||+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 456789999999999999999999975433323334455555566777888999999999999987664 7788899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999988776543 47999999999999887778888899999988999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1169 169 FLETAKKIYQN 179 (218)
Q Consensus 169 ~~~i~~~~~~~ 179 (218)
|+++++.+.+.
T Consensus 179 f~~l~~~i~~~ 189 (195)
T 3cbq_A 179 FEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 42
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2e-32 Score=199.10 Aligned_cols=165 Identities=21% Similarity=0.371 Sum_probs=142.6
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
.++....+||+|+|++|||||||+++|+...+...+.++ ...+ ...+.+++..+.+.||||+|++.+. +++.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 345677899999999999999999999999988777776 3333 4677788999999999999998776 77889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCC--CCccccHHHHHHHHHhCC-CcEEEeccCCCCC
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLE--GSRDVRYDEAKKFAEEND-LIFVEASAMTGEN 164 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 164 (218)
|++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..++...+ ++++++||+++.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999998877653 578999999999994 466778888999999886 8999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy1169 165 VEQAFLETAKKIYQNI 180 (218)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (218)
++++|+++++.+.+..
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987753
No 43
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.5e-32 Score=201.27 Aligned_cols=167 Identities=36% Similarity=0.673 Sum_probs=147.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeE----------------------------
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK---------------------------- 63 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 63 (218)
++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4567999999999999999999999999888888888888877777666554
Q ss_pred ---------EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 64 ---------IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 64 ---------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
+.+.|||+||++.+...+..+++.+|++|+|||++++.+++.+..|+..+.... +.|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence 899999999999999999999999999999999999999999999998887655 399999999999 55
Q ss_pred CccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181 (218)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~ 181 (218)
.+.+..+++.+++...+++++++||+++.|++++|++|.+.+.++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 56677789999999999999999999999999999999999987654
No 44
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-32 Score=202.66 Aligned_cols=164 Identities=27% Similarity=0.377 Sum_probs=141.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4569999999999999999999999888777777766554 344567888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.+..+++..++...+++++++||+++.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999888877766543 4789999999999965 45666788888888889999999999999999999
Q ss_pred HHHHHHHH
Q psy1169 171 ETAKKIYQ 178 (218)
Q Consensus 171 ~i~~~~~~ 178 (218)
+|++.+.+
T Consensus 164 ~l~~~~~~ 171 (199)
T 2gf0_A 164 ELLTLETR 171 (199)
T ss_dssp HHHHHCSS
T ss_pred HHHHHHhh
Confidence 99887643
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=8e-33 Score=198.16 Aligned_cols=165 Identities=24% Similarity=0.326 Sum_probs=133.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-hhHhhhccCCEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGAAGALM 93 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 93 (218)
.+||+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|.+.+.. +...+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999999999998776666666666777777888899999999999999988776 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999988877653 479999999999998778888899999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy1169 173 AKKIYQN 179 (218)
Q Consensus 173 ~~~~~~~ 179 (218)
++.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988654
No 46
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=203.39 Aligned_cols=165 Identities=25% Similarity=0.376 Sum_probs=142.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..+ ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45679999999999999999999999998888888887766 445667888999999999999988775 6789999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc-CCCCCHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA-MTGENVEQ 167 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~i~~ 167 (218)
|+|||++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..+++.+++...+++++++|| +++.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 99999999999999999998887653 257999999999999877778888999999999999999999 89999999
Q ss_pred HHHHHHHHHHH
Q psy1169 168 AFLETAKKIYQ 178 (218)
Q Consensus 168 ~~~~i~~~~~~ 178 (218)
+|+.+++.+.+
T Consensus 176 lf~~l~~~i~~ 186 (187)
T 3c5c_A 176 VFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 47
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=197.09 Aligned_cols=168 Identities=26% Similarity=0.385 Sum_probs=135.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--hhhhhHhhhccCCE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVTRSYYRGAAG 90 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 90 (218)
...+||+|+|++|+|||||+++|.+..+...+. +.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 357999999999999999999999887665433 455566667777888899999999999887 56677888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
+|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988777653 3479999999999998877788888888888888999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy1169 170 LETAKKIYQNIK 181 (218)
Q Consensus 170 ~~i~~~~~~~~~ 181 (218)
++|.+.+.++..
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999999876543
No 48
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.7e-33 Score=208.14 Aligned_cols=169 Identities=29% Similarity=0.505 Sum_probs=113.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCceeeeEEEEEEEECCe--EEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVHGE--KIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
...+||+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||++|++.+..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 67899999999999999999999988 777777778777777777777776 88999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCC-CccccHHHHHHHHHhCCCcEEEeccCC-CC
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEG-SRDVRYDEAKKFAEENDLIFVEASAMT-GE 163 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~ 163 (218)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..+++..++...+++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999998887765 5899999999999987 677888899999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHhhh
Q psy1169 164 NVEQAFLETAKKIYQNIK 181 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~ 181 (218)
|++++|++|.+.+.+...
T Consensus 178 gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYE 195 (208)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998877643
No 49
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.8e-33 Score=207.90 Aligned_cols=166 Identities=28% Similarity=0.560 Sum_probs=142.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++.+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35679999999999999999999999988877777777555 44556788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--------ccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169 92 LMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--------VRYDEAKKFAEENDL-IFVEASAMT 161 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~ 161 (218)
|+|||++++++++.+. .|+..+.... ++.|+++|+||+|+...+. +..+++..++...+. +++++||++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999999999986 7888887654 4799999999999976544 266788888888775 899999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy1169 162 GENVEQAFLETAKKIYQN 179 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (218)
+.|++++|+++++.+.+.
T Consensus 164 g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999998765
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3.5e-32 Score=199.30 Aligned_cols=167 Identities=24% Similarity=0.502 Sum_probs=147.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
.....+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 45678999999999999999999999999888888888777654 56678899999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC--ccccHHHHHHHHHhCCCc-EEEeccCCCCCHH
Q psy1169 91 ALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS--RDVRYDEAKKFAEENDLI-FVEASAMTGENVE 166 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~ 166 (218)
+|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+... +.+..+++..++...++. ++++||+++.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 67887776554 67999999999999753 667778899999998888 9999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
++|+++++.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (194)
T 3reg_A 177 EVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 51
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.1e-32 Score=199.54 Aligned_cols=169 Identities=35% Similarity=0.600 Sum_probs=134.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
.....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999999888888888877777777666 56789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCC-CccccHHHHHHHHH-hCCCcEEEeccCCCC
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEG-SRDVRYDEAKKFAE-ENDLIFVEASAMTGE 163 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~ 163 (218)
++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..+++.+++. ..+.+++++||+++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988776543 6789999999999954 34456778888887 577899999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy1169 164 NVEQAFLETAKKIYQN 179 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (218)
|++++|++|.+.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQ 179 (182)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998765
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=3.4e-32 Score=194.32 Aligned_cols=164 Identities=33% Similarity=0.554 Sum_probs=143.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999988777777766655 3455678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999888876653 479999999999998777777888999998889999999999999999999999
Q ss_pred HHHHHH
Q psy1169 173 AKKIYQ 178 (218)
Q Consensus 173 ~~~~~~ 178 (218)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=204.91 Aligned_cols=169 Identities=27% Similarity=0.427 Sum_probs=144.6
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
++....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||++|.+.+..++..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3456789999999999999999999999999888888877776 555556777889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+...++..++...+++++++||+++.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999998887653 247899999999999887888888999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1169 169 FLETAKKIYQN 179 (218)
Q Consensus 169 ~~~i~~~~~~~ 179 (218)
|++|.+.+.+.
T Consensus 178 ~~~l~~~i~~~ 188 (201)
T 3oes_A 178 FTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998775
No 54
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.2e-32 Score=205.04 Aligned_cols=169 Identities=24% Similarity=0.464 Sum_probs=145.1
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
++....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3456679999999999999999999999999888888887776 455567778899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHH-HHHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEE
Q psy1169 90 GALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFV 155 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (218)
++|+|||++++++|+. +..|+..+.... .+.|+++|+||+|+... +.+..+++..++...++ +++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999998 688988887765 68999999999999653 66888899999999998 899
Q ss_pred EeccCCCCC-HHHHHHHHHHHHHHhh
Q psy1169 156 EASAMTGEN-VEQAFLETAKKIYQNI 180 (218)
Q Consensus 156 ~~S~~~~~~-i~~~~~~i~~~~~~~~ 180 (218)
++||+++.| ++++|+.+++.+.+..
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EeccCCCcccHHHHHHHHHHHHhccC
Confidence 999999998 9999999999987653
No 55
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.3e-32 Score=196.06 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=137.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+|+|++|||||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+||++|++. ..+++.+|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999988876 666666444 56667888899999999999876 45788899999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCC--CCccccHHHHHHHHHhC-CCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLE--GSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~ 166 (218)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++.+++... +++++++||+++.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999876655443 2579999999999994 45667778888888774 7899999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy1169 167 QAFLETAKKIYQNIKD 182 (218)
Q Consensus 167 ~~~~~i~~~~~~~~~~ 182 (218)
++|+++.+.+.+....
T Consensus 158 ~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999876543
No 56
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.8e-33 Score=201.50 Aligned_cols=167 Identities=33% Similarity=0.528 Sum_probs=145.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
...+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||++|++.+..++..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998887766667777777777777766 678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcC--CCCe-EEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTN--PNTV-IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
|+|||++++.+++.+..|+..+..... ...| +++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999887766432 2344 8999999999776777778888999888999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1169 169 FLETAKKIYQN 179 (218)
Q Consensus 169 ~~~i~~~~~~~ 179 (218)
|++|.+.+.+.
T Consensus 164 ~~~l~~~~~~~ 174 (178)
T 2hxs_A 164 FQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 99999888553
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=8.6e-32 Score=195.66 Aligned_cols=168 Identities=33% Similarity=0.531 Sum_probs=148.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34679999999999999999999999988877777776665 44556788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 999999999999999999888876653 4799999999999987777778889999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy1169 171 ETAKKIYQNI 180 (218)
Q Consensus 171 ~i~~~~~~~~ 180 (218)
+|.+.+.++.
T Consensus 174 ~l~~~i~~~~ 183 (187)
T 2a9k_A 174 DLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 58
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.3e-31 Score=195.03 Aligned_cols=167 Identities=31% Similarity=0.522 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..+||+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999988877777765443 556667888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+. .+....+.+..++...+++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887654 3589999999999996 4456668888899988999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy1169 172 TAKKIYQNIK 181 (218)
Q Consensus 172 i~~~~~~~~~ 181 (218)
+.+.+.+...
T Consensus 160 l~~~~~~~~~ 169 (189)
T 4dsu_A 160 LVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999977643
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=5e-32 Score=193.47 Aligned_cols=161 Identities=32% Similarity=0.525 Sum_probs=142.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988888777777665 34556777889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCCHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~i 172 (218)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++... +.+++++||+++.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999999988877653 358999999999999877777778888888886 8899999999999999999999
Q ss_pred HHHH
Q psy1169 173 AKKI 176 (218)
Q Consensus 173 ~~~~ 176 (218)
.+.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 60
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=6.8e-32 Score=192.74 Aligned_cols=163 Identities=28% Similarity=0.412 Sum_probs=122.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|++|+|||||+++|.+...... .++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999986654422 33444444 45566788999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999988887643 35799999999999988888888899999999999999999999999999999999
Q ss_pred HHHHHh
Q psy1169 174 KKIYQN 179 (218)
Q Consensus 174 ~~~~~~ 179 (218)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988664
No 61
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9e-32 Score=197.08 Aligned_cols=167 Identities=25% Similarity=0.488 Sum_probs=145.2
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
.+....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 3456789999999999999999999999988877777776655 445667778899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEE
Q psy1169 90 GALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFV 155 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (218)
++|+|||++++++|+.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..++...+. +++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999987 7888877654 47999999999999754 45677888899988787 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHH
Q psy1169 156 EASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 156 ~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
++||+++.|++++|++|.+.+++
T Consensus 171 ~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 171 ECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EeeCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999988763
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.3e-32 Score=192.75 Aligned_cols=163 Identities=29% Similarity=0.493 Sum_probs=144.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988877777766544 55667788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999888776543 5799999999999977777777888889988899999999999999999999999
Q ss_pred HHHHH
Q psy1169 174 KKIYQ 178 (218)
Q Consensus 174 ~~~~~ 178 (218)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88753
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.4e-32 Score=197.95 Aligned_cols=166 Identities=32% Similarity=0.489 Sum_probs=146.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|.+. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45679999999999999999999999998888888877665 44566788889999999999887 77788899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC-CHHHHH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE-NVEQAF 169 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~ 169 (218)
|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999988877654 3589999999999998777788888999998889999999999999 999999
Q ss_pred HHHHHHHHHh
Q psy1169 170 LETAKKIYQN 179 (218)
Q Consensus 170 ~~i~~~~~~~ 179 (218)
++|.+.+.+.
T Consensus 183 ~~l~~~i~~~ 192 (196)
T 2atv_A 183 YELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 64
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-32 Score=201.71 Aligned_cols=170 Identities=26% Similarity=0.483 Sum_probs=142.6
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169 7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86 (218)
Q Consensus 7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (218)
.|+......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++
T Consensus 20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 98 (205)
T 1gwn_A 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 98 (205)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred CCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence 3555567889999999999999999999999998887778877666 445667788899999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-C
Q psy1169 87 GAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-L 152 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~ 152 (218)
.+|++|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+... +.+..+++..++...+ +
T Consensus 99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence 99999999999999999998 68888777654 57999999999999642 4567788888988866 6
Q ss_pred cEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy1169 153 IFVEASAM-TGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 153 ~~~~~S~~-~~~~i~~~~~~i~~~~~~ 178 (218)
+++++||+ ++.|++++|+.+++.++.
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 89999999 689999999999998864
No 65
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=6.2e-32 Score=201.10 Aligned_cols=169 Identities=25% Similarity=0.487 Sum_probs=124.2
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
.+.....+||+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.|||++|++.+..++..+++.+
T Consensus 28 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 106 (214)
T 2j1l_A 28 APPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDA 106 (214)
T ss_dssp ----CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CE
T ss_pred CCCCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccC
Confidence 33345679999999999999999999999888777777765554 45566788899999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCCC-cE
Q psy1169 89 AGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEENDL-IF 154 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~ 154 (218)
|++|+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+...+ .+..+++..++...++ ++
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 9999999999999999986 6888776654 579999999999997653 5666778889988887 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 155 VEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 155 ~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
+++||+++.|++++|++|.+.+.+.
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 66
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=197.89 Aligned_cols=169 Identities=26% Similarity=0.441 Sum_probs=137.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
.....+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 457789999999999999999999998887777777776555 4556678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEE
Q psy1169 91 ALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVE 156 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 156 (218)
+|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..+++..++...+. ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999997 6888777655 48999999999999652 45667788888888776 8999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169 157 ASAMTGENVEQAFLETAKKIYQNIK 181 (218)
Q Consensus 157 ~S~~~~~~i~~~~~~i~~~~~~~~~ 181 (218)
+||+++.|++++|+++++.+.+...
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999887643
No 67
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=6.3e-32 Score=196.41 Aligned_cols=165 Identities=27% Similarity=0.508 Sum_probs=142.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988877778877665 44566788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEe
Q psy1169 92 LMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEA 157 (218)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (218)
|+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+... +.+..+++..++...+ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67888776654 57999999999999642 5577788888988866 789999
Q ss_pred ccC-CCCCHHHHHHHHHHHHHH
Q psy1169 158 SAM-TGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 158 S~~-~~~~i~~~~~~i~~~~~~ 178 (218)
||+ ++.|++++|+.+.+.+++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999988764
No 68
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2.3e-32 Score=200.44 Aligned_cols=175 Identities=21% Similarity=0.245 Sum_probs=140.4
Q ss_pred ccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------CCCceeeeEEEEEE-EECCeEEEEEEeeC
Q psy1169 4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-----------CPHTIGVEFGTRII-EVHGEKIKLQIWDT 71 (218)
Q Consensus 4 ~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~ 71 (218)
|.......++..+||+|+|++|||||||++.+.+ .+... ..++.+.++....+ .+++..+.+.+|||
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence 4444556678899999999999999999965554 44433 23354455444434 45677889999999
Q ss_pred cchhhhhhhhHhhhccCCEEEEEEECC------ChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH
Q psy1169 72 AGQERFRAVTRSYYRGAAGALMVYDIT------RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK 145 (218)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 145 (218)
+|++.+..++..+++.+|++|+|||++ +.++|+.+..|+..+.. ...+.|+++|+||+|+.+. +..+++++
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~ 158 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRA 158 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHH
Confidence 999999999999999999999999999 56777788888877632 3368999999999999654 66788999
Q ss_pred HHHhCCC-cEEEeccCCCCCHHHHHHHHHHHHHHhhhc
Q psy1169 146 FAEENDL-IFVEASAMTGENVEQAFLETAKKIYQNIKD 182 (218)
Q Consensus 146 ~~~~~~~-~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~ 182 (218)
++...++ +++++||+++.|++++|++|.+.+.++...
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 159 VVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp HHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 9999998 999999999999999999999999887543
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=6.8e-32 Score=201.27 Aligned_cols=171 Identities=26% Similarity=0.469 Sum_probs=145.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
.....+||+|+|.+|||||||+++|++..+...+.++.+.......+... +..+.+.+||++|++.+..++..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34678999999999999999999999888777666777766656555443 34489999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999998888776779999999999998777788888888988899999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy1169 170 LETAKKIYQNIK 181 (218)
Q Consensus 170 ~~i~~~~~~~~~ 181 (218)
++|.+.+.+...
T Consensus 167 ~~l~~~~~~~~~ 178 (218)
T 4djt_A 167 LHLARIFTGRPD 178 (218)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHhcccc
Confidence 999999977643
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=7.3e-31 Score=193.42 Aligned_cols=165 Identities=31% Similarity=0.504 Sum_probs=143.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 356799999999999999999999999888777777776664 3456788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEe
Q psy1169 92 LMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEA 157 (218)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (218)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+... +.+..+++..++...+. +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999998 67877776654 57999999999999765 44667788888888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q psy1169 158 SAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~~~~ 178 (218)
||+++.|++++|++|.+.+++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 71
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.3e-34 Score=211.89 Aligned_cols=171 Identities=46% Similarity=0.824 Sum_probs=143.1
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
+....+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus 26 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 26 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp C-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred cCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence 34456788999999999999999999999988877777788888888888889999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999999988877667899999999999987777776778889999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 168 AFLETAKKIYQ 178 (218)
Q Consensus 168 ~~~~i~~~~~~ 178 (218)
+|++|.+.+.+
T Consensus 186 l~~~l~~~l~~ 196 (199)
T 3l0i_B 186 SFMTMAAEIKK 196 (199)
T ss_dssp HHHHHTTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999876644
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=1.7e-30 Score=189.60 Aligned_cols=165 Identities=31% Similarity=0.513 Sum_probs=134.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
-..+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 3569999999999999999999999888777777665554 455667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.. +....+++++++...+++++++||+++.|++++|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999888776543 4799999999999975 556678888999888999999999999999999999
Q ss_pred HHHHHHHh
Q psy1169 172 TAKKIYQN 179 (218)
Q Consensus 172 i~~~~~~~ 179 (218)
|.+.+.+.
T Consensus 177 l~~~~~~~ 184 (190)
T 3con_A 177 LVREIRQY 184 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 73
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.98 E-value=2.4e-30 Score=190.35 Aligned_cols=171 Identities=51% Similarity=0.869 Sum_probs=150.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56899999999999999999999999888888888888887888888999999999999999998888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
+|+|+.+..+++.+..|+..+......+.|+++++||.|+.+.+.+...+++.++...++.++++|++++.+++++|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998889887766555678999999999998777777788999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q psy1169 173 AKKIYQNIKDG 183 (218)
Q Consensus 173 ~~~~~~~~~~~ 183 (218)
.+.+.+.....
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T 2f9l_A 163 LTEIYRIVSQK 173 (199)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhhc
Confidence 99998765443
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=1.8e-30 Score=184.86 Aligned_cols=162 Identities=31% Similarity=0.560 Sum_probs=141.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (218)
.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999888777777765544 45566788889999999999999888999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 95 YDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
||+++..+++.+..|+..+..... .+.|+++|+||+|+.. +....+++.+++...+++++++|++++.|++++|+++.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888776543 4799999999999976 45666788889888899999999999999999999999
Q ss_pred HHHHH
Q psy1169 174 KKIYQ 178 (218)
Q Consensus 174 ~~~~~ 178 (218)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88754
No 75
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=4.7e-31 Score=191.68 Aligned_cols=164 Identities=26% Similarity=0.531 Sum_probs=142.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3579999999999999999999999888877777766554 445567888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEec
Q psy1169 93 MVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEAS 158 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (218)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..+++..++...+. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 6888777654 47999999999998654 45666788888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy1169 159 AMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~ 178 (218)
|+++.|++++|+++.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999988854
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.4e-31 Score=189.90 Aligned_cols=162 Identities=28% Similarity=0.395 Sum_probs=140.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (218)
..+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888777777766554 3445567888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169 94 VYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171 (218)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 171 (218)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+...+...++...+++++++||+++.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999888887766542 47899999999999777777777888888888899999999999999999999
Q ss_pred HHHHH
Q psy1169 172 TAKKI 176 (218)
Q Consensus 172 i~~~~ 176 (218)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98755
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=1.9e-30 Score=189.89 Aligned_cols=166 Identities=25% Similarity=0.376 Sum_probs=135.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhhhhHhhhccCC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAVTRSYYRGAA 89 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 89 (218)
...+||+|+|++|||||||+++|.+.. +...+ ++.+.++....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 356999999999999999999998632 33333 3455566667777889999999999999776 4556777889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 168 (218)
++|+|||+++..+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988776543 357999999999999776777777888888888899999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1169 169 FLETAKKIYQN 179 (218)
Q Consensus 169 ~~~i~~~~~~~ 179 (218)
|+++.+.+...
T Consensus 163 f~~l~~~~~~~ 173 (192)
T 2cjw_A 163 FEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988654
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.5e-30 Score=192.56 Aligned_cols=165 Identities=29% Similarity=0.511 Sum_probs=137.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 456899999999999999999999998887777776666543 3567888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEec
Q psy1169 93 MVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEAS 158 (218)
Q Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (218)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+... +.+..+++..++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67887776644 57999999999999654 34666778888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q psy1169 159 AMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~ 179 (218)
|+++.|++++|++|.+.+++.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=5e-32 Score=196.24 Aligned_cols=164 Identities=28% Similarity=0.554 Sum_probs=125.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 456799999999999999999999998887777676654442 2234556678889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcc----------ccHHHHHHHHHhCCC-cEEEecc
Q psy1169 92 LMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRD----------VRYDEAKKFAEENDL-IFVEASA 159 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~ 159 (218)
|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+. +..+++..++...+. +++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999997 6888777664 4799999999999976554 366778888888776 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy1169 160 MTGENVEQAFLETAKKIY 177 (218)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~ 177 (218)
+++.|++++|+++.+.++
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998774
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=9.3e-32 Score=201.01 Aligned_cols=172 Identities=30% Similarity=0.534 Sum_probs=148.5
Q ss_pred cCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh
Q psy1169 5 SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84 (218)
Q Consensus 5 ~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 84 (218)
...........+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.|||++|++.+..++..+
T Consensus 5 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 84 (221)
T 3gj0_A 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84 (221)
T ss_dssp -CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH
T ss_pred ccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH
Confidence 33445566788999999999999999999988777666667777888878888888899999999999999999999999
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
++.+|++|+|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+.... .+...++...+++++++||+++.|
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999999999999888765 57999999999999755432 355567777789999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1169 165 VEQAFLETAKKIYQN 179 (218)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (218)
++++|++|.+.+...
T Consensus 162 i~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 162 FEKPFLWLARKLIGD 176 (221)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998765
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=7.9e-31 Score=192.61 Aligned_cols=170 Identities=14% Similarity=0.251 Sum_probs=129.3
Q ss_pred CCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh
Q psy1169 6 SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84 (218)
Q Consensus 6 ~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 84 (218)
+...++.....||+|+|.+|||||||+++|++..+.. .+.++.+.... .+ +...+.+.||||+|++.+..++..+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETY 83 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGG
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHH
Confidence 3455667888999999999999999999999998887 67777764432 23 3355789999999999999999999
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC--------CCCeEEEEeeCCCCCCCcccc---HHHHHH-HHHhCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN--------PNTVIFLIGNKMDLEGSRDVR---YDEAKK-FAEENDL 152 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~piivv~nK~Dl~~~~~~~---~~~~~~-~~~~~~~ 152 (218)
++.+|++|+|||+++..+|+.+..|+..+..... .+.|+++|+||+|+....... ...... ++...++
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence 9999999999999999999999998887765421 278999999999997653211 111111 1244778
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 153 IFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 153 ~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
+++++||+++.|++++|++|.+.+.+.
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998775
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=9.3e-31 Score=193.33 Aligned_cols=163 Identities=26% Similarity=0.537 Sum_probs=137.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|.+|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35679999999999999999999999988877777765443 55566788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcc------------ccHHHHHHHHHhCCC-cEEEe
Q psy1169 92 LMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRD------------VRYDEAKKFAEENDL-IFVEA 157 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~~~ 157 (218)
|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+. +..+++..++...+. +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999997 7888777665 6799999999999976543 667788888888776 49999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q psy1169 158 SAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~~ 176 (218)
||+++.|++++|+++.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.2e-29 Score=185.56 Aligned_cols=166 Identities=52% Similarity=0.881 Sum_probs=149.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (218)
.++..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999999888888898988888888899999999999999999888888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169 91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 170 (218)
+++|+|+.+..+++.+..|+..+......+.|+++++||.|+.+.+.+..+++++++...++.++++|++++.+++++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999988888777655556789999999999977666777889999999999999999999999999999
Q ss_pred HHHHHH
Q psy1169 171 ETAKKI 176 (218)
Q Consensus 171 ~i~~~~ 176 (218)
.+.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=5.5e-30 Score=186.77 Aligned_cols=160 Identities=19% Similarity=0.321 Sum_probs=129.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|+|||||+++|.+..+...+.++.+.++.. +. ...+.+.+||++|++.+..++..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 4567999999999999999999999998887777777766543 22 2457889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENV 165 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i 165 (218)
|+|||+++.++++.+..|+..+.... ..+.|+++|+||+|+..... .++..... ...+++++++||+++.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC--HHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 99999999999999999888776532 25799999999999965422 22222211 123557999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 166 EQAFLETAKKIY 177 (218)
Q Consensus 166 ~~~~~~i~~~~~ 177 (218)
+++|++|.+.+.
T Consensus 173 ~~l~~~l~~~~~ 184 (188)
T 1zd9_A 173 DITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.5e-29 Score=181.26 Aligned_cols=159 Identities=20% Similarity=0.324 Sum_probs=126.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..+||+|+|++|+|||||+++|.+..+.. +.++.+.. ...+.++ .+.+.+||+||++.+...+..+++.+|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 456999999999999999999999887753 44555543 3344444 568899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHH-----HHhCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKF-----AEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~ 166 (218)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+...... .+.... +...+++++++||+++.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--HHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999988887765532 257999999999999765322 222221 22346679999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 167 QAFLETAKKIYQ 178 (218)
Q Consensus 167 ~~~~~i~~~~~~ 178 (218)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=5.1e-30 Score=182.61 Aligned_cols=156 Identities=19% Similarity=0.359 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (218)
+||+|+|++|+|||||+++|.+..+.. +.++.+.. ...+.. ..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877654 44555533 333333 4478899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCHHHHH
Q psy1169 96 DITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~ 169 (218)
|++++++++.+..|+..+... ...+.|+++|+||+|+..... ..+..... ...+++++++||+++.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888876553 235799999999999965422 22222211 1235579999999999999999
Q ss_pred HHHHHHHHH
Q psy1169 170 LETAKKIYQ 178 (218)
Q Consensus 170 ~~i~~~~~~ 178 (218)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987754
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=182.67 Aligned_cols=163 Identities=18% Similarity=0.270 Sum_probs=128.1
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 88 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (218)
......+||+|+|.+|+|||||+++|.+.. +...+.++.+. ....+.+++ +.+.+||++|++.+...+..+++.+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 345677999999999999999999999877 45556666553 344444443 6889999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccC
Q psy1169 89 AGALMVYDITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAM 160 (218)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~ 160 (218)
|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+... ...+++.++.. ..+++++++||+
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 999999999999999999999887766543 47999999999999653 33455555553 235679999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy1169 161 TGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~ 178 (218)
++.|++++|++|.+.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=7.3e-29 Score=180.33 Aligned_cols=160 Identities=22% Similarity=0.360 Sum_probs=129.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..+||+|+|++|+|||||+++|.+.. ...+.++.+.. ...+.++ .+.+.+||+||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887 55666666644 3344444 468899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 166 (218)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999998888776542 35799999999999976533 233333222 345679999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=2.9e-29 Score=184.52 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=120.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+..++..+++.+|++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34579999999999999999999887754 344555444 34455555 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----------------CCCcE
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----------------NDLIF 154 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 154 (218)
+|+|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.+++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999988776542 35799999999999965 4556677776652 34579
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q psy1169 155 VEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 155 ~~~S~~~~~~i~~~~~~i~~~ 175 (218)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998754
No 90
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=6.3e-30 Score=185.87 Aligned_cols=164 Identities=20% Similarity=0.384 Sum_probs=122.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCceeeeEEEEEEEE---CCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEV---HGEKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (218)
.+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+||++|++.+..+...+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999884 455556677777766555443 235678999999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc---HHHHHHHHHhCCCc----EEEeccCC
Q psy1169 90 GALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR---YDEAKKFAEENDLI----FVEASAMT 161 (218)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~ 161 (218)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+...+.+. .+....++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 58999999998876544 579999999999997654432 23345566666776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHh
Q psy1169 162 GE-NVEQAFLETAKKIYQN 179 (218)
Q Consensus 162 ~~-~i~~~~~~i~~~~~~~ 179 (218)
+. +++++++.+.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 8999998888877553
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=8.6e-29 Score=180.81 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=125.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+||+||++.+..++..+++.+|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 44579999999999999999999988765 344555543 34555555 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh------------CCCcEEEecc
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------------NDLIFVEASA 159 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~S~ 159 (218)
+|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.. ....+++.+++.. .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999988776542 35799999999999965 3455666655442 3467999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy1169 160 MTGENVEQAFLETAKK 175 (218)
Q Consensus 160 ~~~~~i~~~~~~i~~~ 175 (218)
+++.|++++|+++.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2e-29 Score=182.65 Aligned_cols=161 Identities=23% Similarity=0.303 Sum_probs=122.8
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (218)
...+....+||+|+|.+|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+||++|++.+..++..+++.
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTN 88 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence 344566789999999999999999999998877 33444544433 3344443 788999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCC
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMT 161 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~ 161 (218)
+|++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+... ...+++.+.. ...+++++++||++
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 999999999999999999999888776542 357999999999999654 2233333333 22455799999999
Q ss_pred CCCHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKK 175 (218)
Q Consensus 162 ~~~i~~~~~~i~~~ 175 (218)
+.|++++|++|.+.
T Consensus 167 g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 167 GEGLCQGLEWMMSR 180 (181)
T ss_dssp TBTHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHhh
Confidence 99999999998753
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.2e-29 Score=184.26 Aligned_cols=159 Identities=18% Similarity=0.318 Sum_probs=118.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|++|||||||+++|..+.+.. +.++.+ +....+.. ..+.+.+||+||.+.+..++..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999998877642 233333 22333433 347889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENV 165 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i 165 (218)
|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+..... .+++.... ...+++++++||+++.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999888765432 25799999999999965422 22222211 123457999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 166 EQAFLETAKKIY 177 (218)
Q Consensus 166 ~~~~~~i~~~~~ 177 (218)
+++|++|.+.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (192)
T 2b6h_A 179 YDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-28 Score=178.36 Aligned_cols=159 Identities=23% Similarity=0.333 Sum_probs=123.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+|+|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+||++|++.+..++..+++.+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999987765 444454433 33344443 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 166 (218)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+... ...+++.+... ..+++++++||+++.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988776542 257999999999999653 22344444332 345689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 167 QAFLETAKKIYQ 178 (218)
Q Consensus 167 ~~~~~i~~~~~~ 178 (218)
++|++|++.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (187)
T 1zj6_A 167 QGLEWMMSRLKI 178 (187)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987744
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=4e-28 Score=191.57 Aligned_cols=164 Identities=26% Similarity=0.531 Sum_probs=143.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...++|+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||++|.+.+...+..+++.+|++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4568999999999999999999999988877777776555 455667888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEec
Q psy1169 93 MVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEAS 158 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (218)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..+++..++...++ +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 6877777654 48999999999998653 45677888999998887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy1169 159 AMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~ 178 (218)
|+++.|++++|+.+.+.++.
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.5e-29 Score=185.70 Aligned_cols=164 Identities=21% Similarity=0.305 Sum_probs=121.4
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEE--EEEE-CCeEEEEEEeeCcchhhhhhhh---
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEV-HGEKIKLQIWDTAGQERFRAVT--- 81 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~D~~G~~~~~~~~--- 81 (218)
...+....+||+|+|++|||||||++++.+.. ... ++.+.++... ...+ ++..+.+.+||++|++.+....
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 44567788999999999999999999877643 222 2333333222 2223 2566889999999999987766
Q ss_pred HhhhccCCEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC-------CccccHHHHHHHHH----
Q psy1169 82 RSYYRGAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG-------SRDVRYDEAKKFAE---- 148 (218)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-------~~~~~~~~~~~~~~---- 148 (218)
..+++.+|++|+|||+++. +++..+..|+..+... ..+.|+++|+||+|+.. .+.+...+...++.
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 8999999999999999997 6667777777665433 36899999999999864 23455556777777
Q ss_pred hCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 149 ENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 149 ~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
..+++++++||++ .|++++|..+++.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6788899999999 99999999998765
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=8.1e-29 Score=179.56 Aligned_cols=159 Identities=22% Similarity=0.336 Sum_probs=122.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+++|++|||||||+++|.+..+. .+.++.+.. ...+.++ .+.+.+||++|++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999876542 233344432 3344444 468899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~ 166 (218)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+...... ++..+.. ...+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888776543 2357999999999999765432 2332221 1235679999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 167 QAFLETAKKIYQ 178 (218)
Q Consensus 167 ~~~~~i~~~~~~ 178 (218)
++|+++.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=2.7e-29 Score=183.12 Aligned_cols=160 Identities=18% Similarity=0.306 Sum_probs=125.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..+||+|+|++|+|||||+++|....+.. +.++.+.. ...+.++ .+.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 567999999999999999999998776643 34444433 3334443 468899999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHH-----HHhCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKF-----AEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~ 166 (218)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+...... ++.... +...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE--AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH--HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988887765532 257999999999999655321 222221 12345679999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
++|+++.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=5.4e-31 Score=194.52 Aligned_cols=162 Identities=27% Similarity=0.542 Sum_probs=135.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+|+|.+|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5679999999999999999999998888776666655444 344456677788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCCC-cEEEec
Q psy1169 93 MVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEENDL-IFVEAS 158 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 158 (218)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+ .+..+++..++...+. +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 6777666543 379999999999997543 4455667777777777 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy1169 159 AMTGENVEQAFLETAKKI 176 (218)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~ 176 (218)
|+++.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5e-29 Score=180.64 Aligned_cols=160 Identities=23% Similarity=0.334 Sum_probs=123.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..+||+|+|++|||||||+++|.++.+ ..+.++.+.. ...+.+++ +.+.+||+||.+.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999987766 3444555433 33344443 78899999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----NDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~ 166 (218)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..+++...... .+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999988776543 3679999999999996542 23344333322 34579999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.6e-29 Score=189.76 Aligned_cols=167 Identities=23% Similarity=0.373 Sum_probs=123.9
Q ss_pred CCCCcceeeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCce-eeeEEEEE--------------EEEC
Q psy1169 8 GQYSYSYIFKYIIIGDM---------GVGKSCLLHQFTE---QKFMPDCPHTI-GVEFGTRI--------------IEVH 60 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~---------g~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~ 60 (218)
........+||+|+|.+ |||||||+++|.+ ..+...+.++. +.++.... ..++
T Consensus 12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (255)
T 3c5h_A 12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED 91 (255)
T ss_dssp TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence 34456778999999999 9999999999998 55655555554 33322111 1245
Q ss_pred CeEEEEEEee-----------------------CcchhhhhhhhHhhhc---------------------cCCEEEEEEE
Q psy1169 61 GEKIKLQIWD-----------------------TAGQERFRAVTRSYYR---------------------GAAGALMVYD 96 (218)
Q Consensus 61 ~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d 96 (218)
+..+.+.||| ++|++.+..++..+++ ++|++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 6778899999 5566666666666666 7999999999
Q ss_pred CCCh--hhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCHHHHHHHH
Q psy1169 97 ITRR--STYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 97 ~~~~--~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~i 172 (218)
++++ .+|+.+..|+..+... ...+.|+++|+||+|+...+.+ +++.+++.. .+++++++||+++.|++++|++|
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 9998 9999999999887765 3357999999999999655444 567777776 58899999999999999999999
Q ss_pred HHHH
Q psy1169 173 AKKI 176 (218)
Q Consensus 173 ~~~~ 176 (218)
.+.+
T Consensus 250 ~~~l 253 (255)
T 3c5h_A 250 VQLI 253 (255)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8876
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=9.2e-27 Score=172.96 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=114.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe-EEEEEEeeCcchhhhhh-hhHhhhccCCE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRA-VTRSYYRGAAG 90 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 90 (218)
...+||+|+|++|+|||||+++|++..+...+.++ ..++.. +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 56799999999999999999999998877666543 333332 445543 68899999999999887 78889999999
Q ss_pred EEEEEECCChh-hHHHHHHHHHHH-hh--hcCCCCeEEEEeeCCCCCCCccccH--HHHHHHHH----------------
Q psy1169 91 ALMVYDITRRS-TYNHLSSWLTDT-KN--LTNPNTVIFLIGNKMDLEGSRDVRY--DEAKKFAE---------------- 148 (218)
Q Consensus 91 ~i~v~d~~~~~-s~~~~~~~~~~~-~~--~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~---------------- 148 (218)
+|+|||+++.. ++.....|+..+ .. ....+.|+++|+||+|+...+.... +.......
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999853 455555544433 22 1235799999999999976543211 11111111
Q ss_pred -----------------hC--CCcEEEeccCCC------CCHHHHHHHHHHH
Q psy1169 149 -----------------EN--DLIFVEASAMTG------ENVEQAFLETAKK 175 (218)
Q Consensus 149 -----------------~~--~~~~~~~S~~~~------~~i~~~~~~i~~~ 175 (218)
.. +++|+++||+++ .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999865
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.4e-26 Score=173.75 Aligned_cols=166 Identities=19% Similarity=0.185 Sum_probs=117.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch------hh----hhhhhH
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ------ER----FRAVTR 82 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~----~~~~~~ 82 (218)
...++|+|+|++|||||||+++|++..+.....+..+.+.....+... .+.+.||||||. +. +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 567999999999999999999999877643222222223323333333 367889999998 33 222 34
Q ss_pred hhhccCCEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH---HHHHHHHhCC--CcEE
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD---EAKKFAEEND--LIFV 155 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~ 155 (218)
.++..+|++|+|||++++.+++. ...|+..+.... .+.|+++|+||+|+...+.+..+ ....++...+ ++++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 45788899999999999887642 234555444322 37999999999999876666543 4556666666 7899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHhhhc
Q psy1169 156 EASAMTGENVEQAFLETAKKIYQNIKD 182 (218)
Q Consensus 156 ~~S~~~~~~i~~~~~~i~~~~~~~~~~ 182 (218)
++||+++.|++++|++|.+.+.+....
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998776543
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=2.9e-27 Score=168.84 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=113.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------hhhHhhhc--
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR-- 86 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 86 (218)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998766544444444454455555554 578899999987653 34456664
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +...++...+++++++||+++.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999998643 3456655544 4689999999999864443332 3566777778899999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 167 QAFLETAKKI 176 (218)
Q Consensus 167 ~~~~~i~~~~ 176 (218)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 105
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=4.7e-27 Score=171.92 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=113.4
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc----------hhhh
Q psy1169 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERF 77 (218)
Q Consensus 8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~ 77 (218)
.+.+....++|+|+|++|+|||||+++|++..+.....++.+.+........++ .+.+||||| .+.+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~ 92 (195)
T 1svi_A 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAW 92 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHH
T ss_pred hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHH
Confidence 344556789999999999999999999998876555555554444344444433 588999999 7778
Q ss_pred hhhhHhhhccC---CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--HHHHH-HHHhCC
Q psy1169 78 RAVTRSYYRGA---AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--DEAKK-FAEEND 151 (218)
Q Consensus 78 ~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~ 151 (218)
..+...+++.+ |++++|+|+++..++.... ++..+.. .+.|+++|+||+|+...+++.. +++.+ +....+
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence 88888888877 9999999999987776542 2222222 5689999999999976654432 22333 333356
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 152 LIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 152 ~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
.+++++||+++.|++++|++|.+.+
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998765
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=4e-27 Score=184.01 Aligned_cols=161 Identities=22% Similarity=0.338 Sum_probs=127.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-----hhhhHhhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-----RAVTRSYY 85 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 85 (218)
..+||+++|++|||||||+++|++.... ..+.+|.+..+. .+.+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999876322 234455555544 333433 678999999999988 67888899
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCC--Ccc----ccHHHHHHHHHhCC---CcE
Q psy1169 86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMDLEG--SRD----VRYDEAKKFAEEND---LIF 154 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 154 (218)
+.+|++|+|||+++.++++.+..|...+.... .++.|+++|+||+|+.. .+. +..+++.+++...+ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999987765544332 35799999999999976 443 55577888888876 789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 155 VEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 155 ~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
+++||++ .++.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8899999888876543
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.3e-27 Score=186.93 Aligned_cols=159 Identities=19% Similarity=0.350 Sum_probs=118.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
...+||+|+|.+|+|||||+++|.+..+.... ++.+..+ ..+.. ..+.+.||||+|++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 35679999999999999999999887764332 3333332 22323 4478899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 166 (218)
+|||+++..+|+.+..|+..+.... ..++|+++|+||+|+...... +++..... ..+++++++||+++.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH--HHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 9999999999999988777665432 358999999999999765422 22222221 235579999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 167 QAFLETAKKIYQ 178 (218)
Q Consensus 167 ~~~~~i~~~~~~ 178 (218)
++|++|++.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=9.1e-28 Score=186.38 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=119.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh---hhHhhhccCCE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA---VTRSYYRGAAG 90 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 90 (218)
||+++|+.|||||||++++.+..... ...+|.+.++.. ++ ..+.++||||+|+++|.. ....|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 245666666543 22 347899999999999864 46889999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC-------ccccHHHHHHHHHh----CCCcEEEe
Q psy1169 91 ALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS-------RDVRYDEAKKFAEE----NDLIFVEA 157 (218)
Q Consensus 91 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 157 (218)
+|+|||+++. ++++.+..|+..+... .+++|+++++||+|+... |.+..++++++++. .++.|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999998 3333333444444333 368999999999999764 34555667777775 67889999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169 158 SAMTGENVEQAFLETAKKIYQNIK 181 (218)
Q Consensus 158 S~~~~~~i~~~~~~i~~~~~~~~~ 181 (218)
||++ .++.++|..+++.++.+.+
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHH
Confidence 9998 5899999999988766533
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=4.1e-26 Score=164.42 Aligned_cols=158 Identities=20% Similarity=0.180 Sum_probs=118.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++. .+.+|||||++.+..++..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 56789999999999999999999998887766666555555555556654 5679999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-------C--CcEEEeccCCCC
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-------D--LIFVEASAMTGE 163 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~S~~~~~ 163 (218)
+|+|+++....+.+. ++..+ ...+.|+++|+||+|+.... .++........ + ++++++||+++.
T Consensus 84 ~v~d~~~~~~~~~~~-~l~~~---~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE-AINHA---KAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHHHH-HHHHH---GGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHHHH-HHHHH---HhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 999999843332222 12222 22578999999999996532 12333322221 1 579999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy1169 164 NVEQAFLETAKKIYQN 179 (218)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (218)
|++++|++|.+.+...
T Consensus 157 gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 157 GLDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhhhh
Confidence 9999999999887654
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1.5e-26 Score=192.00 Aligned_cols=161 Identities=19% Similarity=0.338 Sum_probs=125.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (218)
....+||+|+|.+|||||||+++|++..+.. ..+|.+..+. .+. ...+.+.||||+|++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEE--SSSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEE--eCCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3457999999999999999999999888543 4455555443 232 3457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCH
Q psy1169 92 LMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENV 165 (218)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i 165 (218)
|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+..... ..+...... ...++++++||++|.|+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--HHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--HHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 99999999999999999888775533 25799999999999965432 222222221 13446999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1169 166 EQAFLETAKKIYQN 179 (218)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (218)
+++|++|.+.+.+.
T Consensus 472 ~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 472 YEGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877443
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=2.1e-26 Score=167.67 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc-----------hhhhhhhhHhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG-----------QERFRAVTRSY 84 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 84 (218)
+||+|+|++|+|||||+++|.+..+...+.++.+... ..+.+. .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999887766655444332 223233 678999999 67777788888
Q ss_pred hcc-CCEEEEEEECCChhhHHHH-HHHHHH---------HhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc
Q psy1169 85 YRG-AAGALMVYDITRRSTYNHL-SSWLTD---------TKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI 153 (218)
Q Consensus 85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (218)
++. ++++++++++.+..++..+ ..|... .......+.|+++|+||+|+...+ .+....++...+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 887 8877777777777777766 455432 122223579999999999997654 45677777776653
Q ss_pred -------EEEeccCCCCCHHHHHHHHHHHHHHhh
Q psy1169 154 -------FVEASAMTGENVEQAFLETAKKIYQNI 180 (218)
Q Consensus 154 -------~~~~S~~~~~~i~~~~~~i~~~~~~~~ 180 (218)
++++||+++.|++++|+++.+.+.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999999887643
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=3.5e-26 Score=166.33 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=120.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------hhhHhhhc-
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR- 86 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 86 (218)
..++|+|+|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||.+.+. .+...++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998765444445555555555565554 678899999987653 44566664
Q ss_pred -cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169 87 -GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV 165 (218)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (218)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...+.+. .+...++...+++++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 4999999999886 4455667665554 578999999999986544333 3566777777889999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1169 166 EQAFLETAKKIYQN 179 (218)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (218)
+++|+++.+.+.+.
T Consensus 157 ~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 157 EELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888654
No 113
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=2.7e-25 Score=162.32 Aligned_cols=162 Identities=18% Similarity=0.268 Sum_probs=116.4
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc----------hhh
Q psy1169 7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QER 76 (218)
Q Consensus 7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~ 76 (218)
..+.+....+||+|+|++|+|||||+++|++..+. ...++.+.+........+. .+.+||+|| .+.
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~ 90 (195)
T 3pqc_A 15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERML 90 (195)
T ss_dssp TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHH
T ss_pred hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHH
Confidence 34556677899999999999999999999988733 3333333333333333332 467999999 667
Q ss_pred hhhhhHhhhccC---CEEEEEEECCChhhH--HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc--cccHHHHHHHHHh
Q psy1169 77 FRAVTRSYYRGA---AGALMVYDITRRSTY--NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR--DVRYDEAKKFAEE 149 (218)
Q Consensus 77 ~~~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~ 149 (218)
+..+...+++.+ |++++|+|+++..+. ..+..|+.. .+.|+++|+||+|+.... ....++...++..
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 777788887776 899999999886443 333334332 268999999999996543 2333455666665
Q ss_pred -CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 150 -NDLIFVEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 150 -~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
..++++++||+++.|++++|+++.+.+.+
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 45789999999999999999999987743
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=9e-25 Score=170.68 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=124.6
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhh----------h
Q psy1169 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------F 77 (218)
Q Consensus 9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~ 77 (218)
.++++..-.|+++|.+|||||||+|+|++..+..... +..+..........+ ...++.||||||... +
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence 4556788999999999999999999999987654222 222222222223222 156788999999743 3
Q ss_pred hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEE
Q psy1169 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFV 155 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 155 (218)
......+++.+|++|+|+|+++..+++....|+..+.. .+.|+++|+||+|+...+.........+....+ .+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 35677888999999999999999888887777776665 468999999999997455555566777777764 7799
Q ss_pred EeccCCCCCHHHHHHHHHHHHH
Q psy1169 156 EASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 156 ~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
++||+++.|++++|+.+.+.+.
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEeCCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999987763
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=3e-25 Score=157.26 Aligned_cols=150 Identities=14% Similarity=0.133 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------hhhhhHhhhcc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------FRAVTRSYYRG 87 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 87 (218)
.||+|+|++|+|||||+++|.+..+. ....+..+.+.....+..++. .+.+||+||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987743 222233334444455555554 678999999876 44566778899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVE 166 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~ 166 (218)
+|++|+|+|+++..+... .++..+... .+.|+++|+||+|+.... +++.+++ ..++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998644322 222222211 468999999999996542 2333444 4556 79999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 167 QAFLETAKKI 176 (218)
Q Consensus 167 ~~~~~i~~~~ 176 (218)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988753
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=5.6e-26 Score=163.29 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=111.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh----h--h--hHhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----A--V--TRSY 84 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~--~--~~~~ 84 (218)
..+||+|+|++|+|||||+++|.+.... ....+..+.++....+.+++. .+.+|||||...+. . + ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987642 222233344555566666654 47899999975421 1 1 2246
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
++.+|++|+|+|+++..+++. ..|+..+......++|+++|+||+|+..... .++...+.+++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999999888763 4677666665555799999999999853321 11223466899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKI 176 (218)
Q Consensus 165 i~~~~~~i~~~~ 176 (218)
++++|++|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3.1e-25 Score=169.09 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=118.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh------hhHhhh-
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYY- 85 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~- 85 (218)
...++|+++|++|+|||||+++|.+..+.....+..+.+.....+... ...+.+||+||...+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 467999999999999999999999876544434444444444444443 36889999999876543 335555
Q ss_pred -ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 86 -RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 86 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
..+|++|+|+|+++.++.. .|...+.. .+.|+++++||+|+...+.+. .+...++...+++++++||+++.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999876532 35544443 479999999999986544443 246777888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKIY 177 (218)
Q Consensus 165 i~~~~~~i~~~~~ 177 (218)
++++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=5.5e-26 Score=190.00 Aligned_cols=165 Identities=20% Similarity=0.281 Sum_probs=124.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEE------EEE--CCeEEEEEEeeCcchhhhhhhhH
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI------IEV--HGEKIKLQIWDTAGQERFRAVTR 82 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~ 82 (218)
.....+||+++|.+|||||||+++|.+..+...+.++.+.++.... +.+ ++..+.+.+||++|++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3467799999999999999999999998888777788777765442 111 23457899999999999999999
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
.+++.+|++|+|+|+++. +.+..|+..+.... .+.|+++|+||+|+...+.+..++.++++...+.+++++||+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999865 45567877777655 47999999999999887777778888888888899999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy1169 163 ENVEQAFLETAKKIYQN 179 (218)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (218)
.|++++++.+.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999887653
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.5e-25 Score=170.57 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----------hhHhhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VTRSYY 85 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 85 (218)
.+|+++|.+|+|||||+++|.+........+..+.+.....+.+++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999987655445556666666666666654 788999999876542 556677
Q ss_pred --ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169 86 --RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE 163 (218)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (218)
..+|++|+|+|+++.+.+..+..+ +. ..+.|+++|+||+|+...+... .....+....+++++++||+++.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999997665444333 22 2479999999999986544332 22445667778999999999999
Q ss_pred CHHHHHHHHHHH
Q psy1169 164 NVEQAFLETAKK 175 (218)
Q Consensus 164 ~i~~~~~~i~~~ 175 (218)
|++++|+++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998765
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=8.3e-25 Score=163.31 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=112.1
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcc----------hhhhh
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAG----------QERFR 78 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G----------~~~~~ 78 (218)
.+....++|+|+|.+|+|||||+++|++...........+.+.......+. .....+.|||||| .+.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 345678999999999999999999999876322222222222222233333 3446788999999 45556
Q ss_pred hhhHhhhcc---CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHHHHHHHHh----
Q psy1169 79 AVTRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDEAKKFAEE---- 149 (218)
Q Consensus 79 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~---- 149 (218)
.+...++.. +|++|+|+|+++..+... ..|+..+.. .+.|+++|+||+|+....... .+...+....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 667777766 788999999998644322 234444443 468999999999997544321 1222222222
Q ss_pred ---CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 150 ---NDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 150 ---~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
...+++++||+++.|++++|++|.+.+.+.
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 567899999999999999999999887543
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=2.7e-25 Score=170.45 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=113.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------hhhHhhhc-
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR- 86 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 86 (218)
+.++|+++|++|||||||+++|.+........+..+.+. ....+.. ...+.+|||||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 458999999999999999999998764433333333332 2333444 5678999999987664 45566665
Q ss_pred -cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169 87 -GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV 165 (218)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (218)
.+|++|+|+|+++.+.+ ..|...+.. .+.|+++++||+|+...+.+. .+...++...+++++++||+++.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986554 345544443 479999999999986444333 3456777778899999999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 166 EQAFLETAKKI 176 (218)
Q Consensus 166 ~~~~~~i~~~~ 176 (218)
+++|+++.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=6.8e-25 Score=163.29 Aligned_cols=144 Identities=21% Similarity=0.278 Sum_probs=106.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc-
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG- 87 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 87 (218)
....++|+|+|++|+|||||+++|.+..+.. .+.++.+..+ ..+.+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4567999999999999999999999887654 2333332222 34578899999999998888888877
Q ss_pred ---CCEEEEEEECC-ChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeCCCCCCCcccc------HHHHHHHHHhCCCc
Q psy1169 88 ---AAGALMVYDIT-RRSTYNHLSSWLTDTKNL----TNPNTVIFLIGNKMDLEGSRDVR------YDEAKKFAEENDLI 153 (218)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 153 (218)
+|++|+|+|++ +..++..+..|+..+... ...+.|+++|+||+|+...+.+. .++...++...+..
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888998888888776654 33689999999999998765543 34466666666778
Q ss_pred EEEeccCCCCC
Q psy1169 154 FVEASAMTGEN 164 (218)
Q Consensus 154 ~~~~S~~~~~~ 164 (218)
++++|++++.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998864
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=3.9e-24 Score=164.36 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=118.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh------hhHhhh--c
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYY--R 86 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~ 86 (218)
.++|+++|++|+|||||+++|.+..+.....+..+.+.....+.+.+. .+.+||+||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999987765455556666666666666554 488999999876554 455666 6
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
.+|++|+|+|+++.+. ...|+..+... ...|+++++||+|+...+.... +...+.+..+++++++||+++.|++
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 8999999999998643 22343333332 1289999999999864433332 2666777788999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1169 167 QAFLETAKKIYQN 179 (218)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (218)
++|+.+.+.+.+.
T Consensus 155 ~l~~~i~~~~~~~ 167 (271)
T 3k53_A 155 ELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887543
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=8.9e-25 Score=168.06 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=113.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh----------hhhHhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----------AVTRSY 84 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~ 84 (218)
.++|+++|.+|+|||||+|+|++..+.....+..+.+.....+...+ ..+.+|||||...+. .....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999998775444445555565555665544 357789999987654 223334
Q ss_pred h--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 85 Y--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
+ +.+|++|+|+|+++.+....+..++ .. .+.|+++|+||+|+...+... .....+....+++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l---~~---~~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQL---LE---LGIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHH---HH---HTCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHH---Hh---cCCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 7999999999999876554443333 32 268999999999986443332 2345667777899999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKKI 176 (218)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (218)
.|++++++++.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999998887654
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.6e-23 Score=171.03 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=116.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcch----------hhhhhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFRAVT 81 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 81 (218)
+..+||+++|.+|||||||+++|++.... ....+.++.+.....+.+++. .+.||||||+ +.+..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999987653 232333344444445555654 4789999998 4455443
Q ss_pred H-hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH-----HHHhCCCcEE
Q psy1169 82 R-SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK-----FAEENDLIFV 155 (218)
Q Consensus 82 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~ 155 (218)
. .+++.+|++|+|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+.+....++..+ +....+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 478899999999999999888776 46655543 579999999999997765544333322 2223467899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 156 EASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 156 ~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
++||++|.|++++|+.+.+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=6.4e-23 Score=168.32 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=118.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc----------hhhhhhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERFRAV 80 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (218)
....++|+++|.+|+|||||+++|++... .....+.++.+.....+..++. .+.|||||| ++.+..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 35679999999999999999999997642 2223333344433445555554 688999999 5666665
Q ss_pred hH-hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-----CCcE
Q psy1169 81 TR-SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-----DLIF 154 (218)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~ 154 (218)
.. .+++.+|++|+|+|+++..+.+. ..|+..+.. .+.|+++|+||+|+...+....+++.+.+... .+++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 54 47899999999999998655433 344444443 56999999999999877766666666666543 5789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 155 VEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 155 ~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
+++||++|.|++++|+.+.+.+.+.
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999887654
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=5.8e-23 Score=168.45 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=99.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhh--------Hhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RSY 84 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 84 (218)
..++|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4589999999999999999999887532 23333444444445555555 568899999987765433 346
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
++.+|++|+|+|++++.+++.+..+...+.... +.|+++|+||+|+....... ...+......+++++||+++.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCC
Confidence 789999999999999988764433333333222 69999999999997665432 2334433236799999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKIY 177 (218)
Q Consensus 165 i~~~~~~i~~~~~ 177 (218)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=2.3e-22 Score=160.15 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=119.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh---------hhhHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVTRS 83 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 83 (218)
...++|+++|++|||||||+++|.+........+..+.......+... ...+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999998776432222222223323333333 3568899999974321 12224
Q ss_pred hhccCCEEEEEEECCChh--hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169 84 YYRGAAGALMVYDITRRS--TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT 161 (218)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (218)
+...+|++|+|+|+++.. +++....|+..+..... +.|+++|+||+|+.....+ ++..+++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 456799999999999877 67777788887776543 7999999999999655432 456666777888999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy1169 162 GENVEQAFLETAKKIYQN 179 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (218)
|.|++++++++.+.+...
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=8.7e-23 Score=158.72 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=107.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRS 83 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 83 (218)
-...+|+|+|.+|+|||||+|+|++..+.... .+..+.+.....+. ....++.||||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 34568999999999999999999988765322 22222222122222 2346889999999764 4556777
Q ss_pred hhccCCEEEEEEECCChhhHHHHHHHH-HHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 84 YYRGAAGALMVYDITRRSTYNHLSSWL-TDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
+++.+|++|+|+|+++..+... .|+ ..+.... .+.|+++|+||+|+...+....+.+..+ ....+++++||+++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDE 157 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCH
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCC
Confidence 8999999999999998755442 343 3444332 4799999999999965433011222222 12346899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKKI 176 (218)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (218)
.|++++++.+.+.+
T Consensus 158 ~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 158 RQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhc
Confidence 99999998887654
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=1.3e-23 Score=169.67 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=113.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh-------hH
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TR 82 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~ 82 (218)
+....++|+|+|..|+|||||+++|++..+. ....+..+.+.....+.+.+.. .+.+|||||++.+..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 4567899999999999999999999887753 2233334444445555555432 7889999998765443 45
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
.++..+|++|+|+|+...+. ...|+..+.. .+.|+++|+||+|+...+.. +....+....+++++++||+++
T Consensus 109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~---~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKE---MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHH---HHHHHHHHHH---TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCChHH---HHHHHHHHHh---cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 57889999999999943333 3455555554 36899999999999766544 5566677778899999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKKIYQ 178 (218)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (218)
.|++++|++|.+.+.+
T Consensus 181 ~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 181 KGFDDIGKTISEILPG 196 (423)
T ss_dssp TSTTTHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHhhhh
Confidence 9999999999988744
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=1.2e-22 Score=160.15 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----hhhhhHhhhc---cC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSYYR---GA 88 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~ 88 (218)
.+|+|+|.++||||||+++|..........+..+.......+.+++ ...+.|||+||... +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4689999999999999999987653322222222222233444443 24688999999653 2234444544 59
Q ss_pred CEEEEEEECCC---hhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEEEeccCC
Q psy1169 89 AGALMVYDITR---RSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFVEASAMT 161 (218)
Q Consensus 89 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~ 161 (218)
+++|+|+|+++ ..+++.+..|+..+..+.. ...|+++|+||+|+...+ +...++..... .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7889899888888877642 479999999999986432 34555666555 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKIYQ 178 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (218)
+.|+++++.+|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999988744
No 132
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=4.2e-21 Score=160.73 Aligned_cols=160 Identities=22% Similarity=0.261 Sum_probs=115.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-------------CCCceeeeEEEEEEEE---CCeEEEEEEeeCcc
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD-------------CPHTIGVEFGTRIIEV---HGEKIKLQIWDTAG 73 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G 73 (218)
.++..+|+|+|+.++|||||+++|+.. .+... .....+.......+.+ ++..+.+.||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 467889999999999999999999852 11110 0011111111111222 45568999999999
Q ss_pred hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-
Q psy1169 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL- 152 (218)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 152 (218)
+.+|......++..+|++|+|+|+++..+++....|..... .++|+++++||+|+...+ ......++....++
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence 99999888899999999999999999988888877765443 478999999999997543 22334455555565
Q ss_pred --cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 153 --IFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 153 --~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
.++++||++|.|++++|+++++.+.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3899999999999999999887663
No 133
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=2.5e-21 Score=162.38 Aligned_cols=159 Identities=21% Similarity=0.262 Sum_probs=111.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----C------CCceeeeEEE--EEEEE---CCeEEEEEEeeCcch
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD-----C------PHTIGVEFGT--RIIEV---HGEKIKLQIWDTAGQ 74 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~-----~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~ 74 (218)
++..+|+|+|+.++|||||+++|+... +... . ....+.+... ..+.+ ++..+.+.||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 357899999999999999999998632 1110 0 0011222221 22222 455789999999999
Q ss_pred hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC--
Q psy1169 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-- 152 (218)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 152 (218)
..|......++..+|++|+|+|+++..+++....|..... .++|+++++||+|+...+ ......++....++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999888888877765443 468999999999997643 22334455555555
Q ss_pred -cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 153 -IFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 153 -~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
.++++||++|.|++++|+++.+.+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 4899999999999999999887663
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=1e-20 Score=153.13 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=104.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--ceeeeEEEEEEEE-------------C--C----eEEEE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPH--TIGVEFGTRIIEV-------------H--G----EKIKL 66 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 66 (218)
..+..++|+++|..++|||||+++|.+.. +..+..+ |....+....+.. + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 34567999999999999999999998532 3333333 4333333333211 1 1 13789
Q ss_pred EEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh----hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccH
Q psy1169 67 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRY 140 (218)
Q Consensus 67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~ 140 (218)
.|||+||++.|.......+..+|++|+|+|+++. .+++.+. .+... ...|+++++||+|+..... ...
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHH
Confidence 9999999999888777778889999999999964 3333332 22221 1247999999999976543 234
Q ss_pred HHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 141 DEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 141 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
+++.+++.. .+++++++||+++.|+++++++|.+.+
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 566677664 467899999999999999999888755
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=4.9e-21 Score=154.83 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=115.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE-------------------EE---CCeEEEEEE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII-------------------EV---HGEKIKLQI 68 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~i 68 (218)
.....++|+++|.+++|||||+++|++....... +........ .. ......+.|
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc----CccccceeeccccccccceecccccccccccccccccceEEE
Confidence 4566799999999999999999999875433211 100000000 00 112368899
Q ss_pred eeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHH
Q psy1169 69 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKF 146 (218)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~ 146 (218)
|||||++.|......++..+|++|+|+|+++..++.....|+..+.... ..|+++++||+|+...... ..++..++
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876666767766555433 2589999999999754322 12233334
Q ss_pred HHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 147 AEE---NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 147 ~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
... .+++++++||+++.|++++++.|.+.+
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 333 266899999999999999999888765
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1e-21 Score=161.18 Aligned_cols=154 Identities=23% Similarity=0.219 Sum_probs=114.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh-hhh--------hhhHhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-RFR--------AVTRSY 84 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~~~ 84 (218)
.++|+|+|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||.. .+. .....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987532 23334444555555666655 457899999987 543 224567
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
++.+|++|+|+|++++.+++... +++.+ .+.|+++|+||+|+... ...+++..+.. .+.+++++||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 89999999999999988876643 33322 36899999999999653 33344544432 456899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1169 165 VEQAFLETAKKIYQN 179 (218)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (218)
+++++++|.+.+...
T Consensus 392 i~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 392 LEKLEESIYRETQEI 406 (482)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987653
No 137
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=147.18 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=104.6
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeEEEEEEEECCeEEEEEEeeCcch-----------hh
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEKIKLQIWDTAGQ-----------ER 76 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~ 76 (218)
.+....++|+|+|++|+|||||+++|++..+.....+ +.+.......+.+.+ ..+.||||||. ..
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 3456779999999999999999999999887655444 333344444455554 46789999993 34
Q ss_pred hhhhhHhhhccCCEEEEEEECCChhh--HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc------HHHHHHHHH
Q psy1169 77 FRAVTRSYYRGAAGALMVYDITRRST--YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR------YDEAKKFAE 148 (218)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~------~~~~~~~~~ 148 (218)
+......+++.+|++|+|+|++.... ...+..+...+... ...|+++|+||+|+...+.+. .+..+.+..
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 44455566678899999999876433 22222222222111 236899999999986554332 235667777
Q ss_pred hCCCcEEEeccCCC-----CCHHHHHHHHHHHHHH
Q psy1169 149 ENDLIFVEASAMTG-----ENVEQAFLETAKKIYQ 178 (218)
Q Consensus 149 ~~~~~~~~~S~~~~-----~~i~~~~~~i~~~~~~ 178 (218)
..+..++.++...+ .++.++|..+.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 77777787776643 5788888877776654
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=9.9e-21 Score=155.91 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=109.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY 85 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (218)
-..++|+++|..++|||||+++|.+.. +..+..+..+.+.....+.+++ ..+.|||+||++.|......++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 356999999999999999999998765 2223222233332223333443 5788999999999988888899
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHhC----CCcEEEecc
Q psy1169 86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEEN----DLIFVEASA 159 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~~S~ 159 (218)
..+|++|+|+|+++....+.... +..+.. .++|+++++||+|+..... ...+++.+++... +.+++++||
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~-l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEH-MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hhCCEEEEEEecCCCccHHHHHH-HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 99999999999998432222222 222222 3588899999999975321 1223455555554 578999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy1169 160 MTGENVEQAFLETAKKIY 177 (218)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~ 177 (218)
++|.|+++++++|.+.+.
T Consensus 171 ~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhc
Confidence 999999999999988774
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=5.7e-21 Score=145.85 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=104.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCc-eeeeEEEEEEEECCeEEEEEEeeCcchhhhh----------
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHT-IGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------- 78 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------- 78 (218)
+....++|+|+|.+|||||||+++|++... .....++ .+.......+...+ ..+.||||||...+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345679999999999999999999998773 3333333 33333333444444 468899999976532
Q ss_pred -hhhHhhhccCCEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEee-CCCCCCCccccH-------HHHHHHHH
Q psy1169 79 -AVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGN-KMDLEGSRDVRY-------DEAKKFAE 148 (218)
Q Consensus 79 -~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piivv~n-K~Dl~~~~~~~~-------~~~~~~~~ 148 (218)
.....+++.+|++|+|+|++..... ..+..|+....... ...|+++++| |+|+.... +.. .....++.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence 2233467899999999999862221 22223333322111 1356666665 99997432 211 22344555
Q ss_pred hCCCc---E--EEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 149 ENDLI---F--VEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 149 ~~~~~---~--~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
..+.. + +++||+++.|++++|+.|.+.+.+.
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 54432 2 7899999999999999999988663
No 140
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.86 E-value=3e-21 Score=152.63 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=98.5
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCC
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMD 131 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D 131 (218)
.+.+.+||++|++.++.+|..++++++++|||+|+++ ..+++....|+..+.... -.++|+++++||.|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999999999 566888888888776532 25799999999999
Q ss_pred CCCCc---------------cccHHHHHHHHH-----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 132 LEGSR---------------DVRYDEAKKFAE-----------ENDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 132 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
+...+ .+..+++..++. ..++.+++|||+++.|++++|+++.+.+.+.
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 84322 256678888876 3567799999999999999999999988764
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=9.4e-21 Score=154.50 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=105.3
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCceeeeEEEEEEE
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF-------------------------------MPDCPHTIGVEFGTRIIE 58 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 58 (218)
.+....++|+++|.+++|||||+++|+...- ..+..+..+.+.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3456779999999999999999999964311 111112334443333333
Q ss_pred ECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh---HHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q psy1169 59 VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134 (218)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~ 134 (218)
. ....+.||||||+++|......++..+|++|+|+|+++... |+....+...+......++| +++++||+|+..
T Consensus 92 ~--~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 T--EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred c--CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 3 34588999999999999988889999999999999998643 11111111112222224566 899999999853
Q ss_pred Cc--c----ccHHHHHHHHHhC------CCcEEEeccCCCCCHHHHHH
Q psy1169 135 SR--D----VRYDEAKKFAEEN------DLIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 135 ~~--~----~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~~~~ 170 (218)
.. + ...++...++... +++++++||++|.|++++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 1 1112344444443 45799999999999999765
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=1.7e-20 Score=149.16 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=108.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch---------hhhhhhhHhhhcc
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ---------ERFRAVTRSYYRG 87 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~ 87 (218)
.|+|+|++|+|||||+++|.+..+.....+..+.+.....+.+++ ..+.+|||+|. +.+.... ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999998765433333334445566666776 45789999996 2233333 35788
Q ss_pred CCEEEEEEECCChh--hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHHhC---CCcEEEeccCC
Q psy1169 88 AAGALMVYDITRRS--TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAEEN---DLIFVEASAMT 161 (218)
Q Consensus 88 ~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~S~~~ 161 (218)
+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+...... ....+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 5666656655555544457899999999998654311 112232333333 34689999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy1169 162 GENVEQAFLETAKKIYQN 179 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (218)
+.|++++++.|.+.+...
T Consensus 338 g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccc
Confidence 999999999998877653
No 143
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=4.5e-21 Score=149.62 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=96.7
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~ 130 (218)
..+.+.+||++|++.++.+|..|+++++++|||+|++ +..++.....|+..+.... -.++|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 3478999999999999999999999999999999765 5667777777777765432 2579999999999
Q ss_pred CCCCCc----------------cccHHHHHHHHH----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 131 DLEGSR----------------DVRYDEAKKFAE----------ENDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 131 Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
|+...+ ....+++.+++. ..++.+++|||+++.|++.+|..+.+.+++.
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 985433 456778887743 3566789999999999999999999999874
No 144
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=1.3e-20 Score=152.68 Aligned_cols=160 Identities=21% Similarity=0.255 Sum_probs=111.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--ceeeeEEEEEEEE-------------C--C----eEEEE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPH--TIGVEFGTRIIEV-------------H--G----EKIKL 66 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 66 (218)
..+..++|+++|..++|||||+++|++.. +..+..+ |....+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 45678999999999999999999998542 2223223 3333333322211 0 1 13689
Q ss_pred EEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh----hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccH
Q psy1169 67 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRY 140 (218)
Q Consensus 67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~ 140 (218)
.|||+||++.|.......+..+|++|+|+|+++. .+.+.+. .+.... ..|+++++||+|+..... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence 9999999999888777778889999999999964 3333332 222221 257999999999975432 223
Q ss_pred HHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 141 DEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 141 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
+++.+++.. .+++++++||+++.|+++++++|.+.+
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 455566554 467899999999999999999888655
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=9.9e-21 Score=154.65 Aligned_cols=151 Identities=22% Similarity=0.235 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh---------hhhhhHhhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVTRSYY 85 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 85 (218)
.+|+|+|.+|||||||+|+|++.... ....+..+.+.....+.+.+. .+.+|||+|.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999977643 222333344444555556654 568999999653 345567789
Q ss_pred ccCCEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH-HHHHHhCCC-cEEEeccCC
Q psy1169 86 RGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA-KKFAEENDL-IFVEASAMT 161 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~~ 161 (218)
+.+|++|+|+|+.+..+..+ +..|+. . .+.|+++|+||+|+... . ..++ .++. ..++ .++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999988655433 333332 2 36899999999997422 1 1222 3343 3455 689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1169 162 GENVEQAFLETAKKIYQ 178 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (218)
|.|+.++++++.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999988754
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1.9e-20 Score=152.96 Aligned_cols=161 Identities=22% Similarity=0.146 Sum_probs=108.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh-----------
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV----------- 80 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 80 (218)
+..++|+|+|++|||||||+++|++.... ....+..+.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35699999999999999999999987642 122223333333455566665 5679999997432211
Q ss_pred -hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHH-----HHHHhCCCcE
Q psy1169 81 -TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAK-----KFAEENDLIF 154 (218)
Q Consensus 81 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~ 154 (218)
...+++.+|++++++|+.+..+.+.. .+...+.. .+.|+++++||+|+...+....++.. .+......++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 13467889999999999987766543 22222222 47899999999999765543333332 2222346789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 155 VEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 155 ~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
+++||++|.|++++|+.+.+.+.+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998877554
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=1.1e-20 Score=143.22 Aligned_cols=166 Identities=14% Similarity=0.065 Sum_probs=103.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCce--eeeEEEEEEEECCeEEEEEEeeCcch--------hhhhhhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI--GVEFGTRIIEVHGEKIKLQIWDTAGQ--------ERFRAVT 81 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~ 81 (218)
....++|+|+|.+|+|||||+|+|++........+.. +.......+..++ ..+.||||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 4567999999999999999999999887665433332 2222233333443 56789999995 3232223
Q ss_pred Hhh----hccCCEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc------HHHHHHHHHhC
Q psy1169 82 RSY----YRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR------YDEAKKFAEEN 150 (218)
Q Consensus 82 ~~~----~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~------~~~~~~~~~~~ 150 (218)
..+ .+.+|++|+|+|++..... ..+..++..+......+.|+++++||.|+....... ....+.+....
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 333 3899999999999853221 222333333322111368999999999996532111 13356677777
Q ss_pred CCcEEEeccCC-----CCCHHHHHHHHHHHHHHh
Q psy1169 151 DLIFVEASAMT-----GENVEQAFLETAKKIYQN 179 (218)
Q Consensus 151 ~~~~~~~S~~~-----~~~i~~~~~~i~~~~~~~ 179 (218)
+..++..++.. +.+++++++.|.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 77777666554 478999998888877654
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=1.4e-21 Score=159.77 Aligned_cols=153 Identities=20% Similarity=0.176 Sum_probs=101.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhh--------Hhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RSY 84 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 84 (218)
..++|+|+|++|+|||||+|+|++..+. ....+..+.+.....+.+++ ..+.+|||+|...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4689999999999999999999976432 22223334444344445555 457899999986654332 235
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169 85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164 (218)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (218)
+..+|++|+|+|++++.+.+. ..|+..+. ..|+++|+||+|+....... ....+. ...+++++||+++.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999999877655 34544442 36999999999997654432 111111 356799999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKIYQ 178 (218)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (218)
+++++++|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=7.2e-22 Score=157.24 Aligned_cols=167 Identities=19% Similarity=0.321 Sum_probs=95.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCC--------CCceeeeEEEEEEEECCeEEEEEEeeCcch-------hh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ-------ER 76 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 76 (218)
...++|+|+|++|+|||||+++|.+.... ..+ .++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 44689999999999999999998764332 222 134444443334444566778999999998 55
Q ss_pred hhhhhH-------hhhccCCEE-----------EEEEECCC-hhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 77 FRAVTR-------SYYRGAAGA-----------LMVYDITR-RSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 77 ~~~~~~-------~~~~~~d~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
+..+.. .|++.++++ +++|++++ ..++..+. .|+..+ ..++|+++|+||+|+...+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 555554 565544332 24444443 33443333 344333 3579999999999997666
Q ss_pred cccH--HHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcCc
Q psy1169 137 DVRY--DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184 (218)
Q Consensus 137 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (218)
++.. +++.+++...+++++++||+++.+ ++.|..+.+.+.+.++...
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v 239 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSV 239 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence 5543 466777777889999999999999 8899999999988766543
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=1.6e-21 Score=161.03 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=97.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCceeeeEEEEEEEECC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF--M-----------------------------PDCPHTIGVEFGTRIIEVHG 61 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (218)
...+||+++|.+++|||||+++|+.... . .+..+..+.+ .....++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~--~~~~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS--ICTSHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCC--CCEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceE--eeeEEEec
Confidence 3569999999999999999999975411 0 0111111222 22222333
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHH------HHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH------LSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
..+.+.||||||+++|......++..+|++|+|+|+++..++.. ....+..+.. . ...|+++++||+|+...
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~-~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T-TCCCEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c-CCCcEEEEEECcCcccc
Confidence 45688999999999999999999999999999999999754322 1122222222 1 12469999999999764
Q ss_pred ccccHHHHH----HHHHhC-----CCcEEEeccCCCCCHHH
Q psy1169 136 RDVRYDEAK----KFAEEN-----DLIFVEASAMTGENVEQ 167 (218)
Q Consensus 136 ~~~~~~~~~----~~~~~~-----~~~~~~~S~~~~~~i~~ 167 (218)
++...+++. .+.... +++++++||++|.|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 433333333 333222 46799999999999975
No 151
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.7e-21 Score=141.05 Aligned_cols=118 Identities=21% Similarity=0.268 Sum_probs=88.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc-
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG- 87 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 87 (218)
....++|+|+|++|||||||+++|.+..+... ..++.+ .....+.+.+||+||.+.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 45679999999999999999999998875431 111211 11134578899999998887767777665
Q ss_pred ---CCEEEEEEECC-ChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeCCCCCCCccc
Q psy1169 88 ---AAGALMVYDIT-RRSTYNHLSSWLTDTKNL----TNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~Dl~~~~~~ 138 (218)
+|++|+|||++ +..++..+..|+..+... ...+.|+++|+||+|+...+.+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 89999999999 899999988888766543 2357999999999999765543
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=4.3e-21 Score=147.65 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=93.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-C-------CCceeeeEEEEEEEECCeEEEEEEeeCcchh-------h
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-C-------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-------R 76 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~ 76 (218)
....++|+|+|.+|+|||||+|+|+....... + .++.+.+.....+..++..+.+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34679999999999999999999876554432 2 4455555555555445556799999999962 2
Q ss_pred hhhhh-------Hhhhcc-------------CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 77 FRAVT-------RSYYRG-------------AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 77 ~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
+..+. ..|+.. +|+++++++.+.......-..+++.+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 33332 334433 7899998877653221222234444432 79999999999986543
Q ss_pred cccH--HHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 137 DVRY--DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 137 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
+... ..+.+.+...+++++++|+.++.++++++.+|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 3221 234555566788999999999999999887776543
No 153
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=6.1e-21 Score=148.50 Aligned_cols=156 Identities=22% Similarity=0.143 Sum_probs=104.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEeeCcchh-h--------hhhhhHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-R--------FRAVTRS 83 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~ 83 (218)
...+|+|+|++|+|||||+++|++..+... ..+..+.+.....+.. ...++.+|||||.. . +......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 445899999999999999999998765321 1111111111222222 34578899999986 2 2233456
Q ss_pred hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCC
Q psy1169 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTG 162 (218)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 162 (218)
+++.+|++++|+|+++ -+ ....|+... ....+.|+++++||+|+...+....+....+....+. .++++||+++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~--l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNK--LREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHH--HHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHH--HHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 6789999999999977 22 222333222 1235789999999999975333333455556665665 6899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1169 163 ENVEQAFLETAKKI 176 (218)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (218)
.|++++++.+.+.+
T Consensus 160 ~~v~~l~~~i~~~l 173 (301)
T 1ega_A 160 LNVDTIAAIVRKHL 173 (301)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999998887654
No 154
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=1.9e-21 Score=158.76 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh--------hhhhhhHhhhcc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTRSYYRG 87 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 87 (218)
++|+++|.+|||||||+|+|.+..+.. ...+.+.+..............+.+|||+|.+ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 689999999999999999998765432 12233333222233334344578999999985 566677888999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHH
Q psy1169 88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVE 166 (218)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~ 166 (218)
+|++|+|+|+.+..++... .+...+. ..+.|+++|+||+|+...+.. ..++. ..++ .++++||++|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChH
Confidence 9999999999987775542 2222232 357899999999998644211 11122 2343 68999999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 167 QAFLETAKKIY 177 (218)
Q Consensus 167 ~~~~~i~~~~~ 177 (218)
++++++.+.+.
T Consensus 154 ~L~~~i~~~l~ 164 (436)
T 2hjg_A 154 DLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHhcC
Confidence 99999887664
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.83 E-value=9.8e-23 Score=168.57 Aligned_cols=159 Identities=20% Similarity=0.208 Sum_probs=113.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
++.++|+|+|.+++|||||+++|.+..+.....++.+.++....+..+ ....+.||||||++.|..+...++..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 356789999999999999999998765544444444444333333232 1236789999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc-HHHHHHH---HHh--CCCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR-YDEAKKF---AEE--NDLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~---~~~--~~~~~~~~S~~~~~~i~ 166 (218)
+|+|+++....+....|. .+ ...++|+++++||+|+....... ..+...+ +.. ..++++++||++|.|++
T Consensus 81 LVVDa~dg~~~qt~e~l~-~~---~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQTVESIQ-HA---KDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHHHHHHHH-HH---HTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHHHHHHHH-HH---HHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999999977665554432 22 23578999999999996532211 1122211 111 13579999999999999
Q ss_pred HHHHHHHHHH
Q psy1169 167 QAFLETAKKI 176 (218)
Q Consensus 167 ~~~~~i~~~~ 176 (218)
++|+++...+
T Consensus 157 eLle~I~~l~ 166 (537)
T 3izy_P 157 ALAEATIALA 166 (537)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhh
Confidence 9999998765
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=2.6e-20 Score=150.32 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=107.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPD-------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 79 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (218)
..++|+++|..++|||||+++|++.. +... .....+.+.......+......+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998631 1100 000111222222233444446788999999999988
Q ss_pred hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccc---cHHHHHHHHHhCC----
Q psy1169 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV---RYDEAKKFAEEND---- 151 (218)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 151 (218)
....++..+|++|+|+|+++....+....| ..+.. .++| +++++||+|+...... ..+++++++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999997655544443 33332 3678 7899999999753221 1235566666654
Q ss_pred -CcEEEeccCCCCC----------HHHHHHHHHHHH
Q psy1169 152 -LIFVEASAMTGEN----------VEQAFLETAKKI 176 (218)
Q Consensus 152 -~~~~~~S~~~~~~----------i~~~~~~i~~~~ 176 (218)
++++++||+++.| +.++++.+.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 6899999998764 666666665543
No 157
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=3.5e-20 Score=145.08 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=96.0
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~ 130 (218)
..+.+.+||++|++.++.+|..|+++++++|||+|++ +..++.....|+..+.... -.++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 6788888888888776543 2579999999999
Q ss_pred CCCCCc---------------cccHHHHHHHHHh---------------------------CCCcEEEeccCCCCCHHHH
Q psy1169 131 DLEGSR---------------DVRYDEAKKFAEE---------------------------NDLIFVEASAMTGENVEQA 168 (218)
Q Consensus 131 Dl~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~S~~~~~~i~~~ 168 (218)
|+...+ ....+++.+++.. ..+.+++|||++..|++.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 984311 1234555554432 2467889999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy1169 169 FLETAKKIYQNIK 181 (218)
Q Consensus 169 ~~~i~~~~~~~~~ 181 (218)
|..+.+.+++++.
T Consensus 319 F~~v~~~Il~~l~ 331 (340)
T 4fid_A 319 FMLAVDVIMKNMA 331 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987433
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.82 E-value=4.4e-20 Score=147.22 Aligned_cols=146 Identities=9% Similarity=0.009 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (218)
+|+++|.+++|||||+++|+ .+..+.+.... .+......+.||||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~--~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMY--NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEE--EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEE--EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999997 11122222222 233344568999999999998877888899999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcCCCCeE-EEEee-CCCCCCCccccH--HHHHHHHHhC---CCcEEE--eccCC---CCC
Q psy1169 97 ITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGN-KMDLEGSRDVRY--DEAKKFAEEN---DLIFVE--ASAMT---GEN 164 (218)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~S~~~---~~~ 164 (218)
.. ..+.....++..+.. .++|. ++++| |+|+ ..+.... +++++++... .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 44 334444555554443 35676 88888 9999 4322221 3455555543 368999 99999 999
Q ss_pred HHHHHHHHHHHHHH
Q psy1169 165 VEQAFLETAKKIYQ 178 (218)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (218)
++++++.|.+.+-.
T Consensus 167 i~~L~~~l~~~~~~ 180 (370)
T 2elf_A 167 VDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 99999999887654
No 159
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=8.8e-20 Score=144.24 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=93.6
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKM 130 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~ 130 (218)
..+.+.+||++|++.++.++..++++++++|||||++ +..+++....|+..+.... ..++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 7788999988988876543 2579999999999
Q ss_pred CCCCCcc---------------------ccHHHHHHHHHh----------------CCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 131 DLEGSRD---------------------VRYDEAKKFAEE----------------NDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 131 Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
|+...+. ...+++.+++.. ..+.+++|||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 124566666432 233468999999999999999999
Q ss_pred HHHHHh
Q psy1169 174 KKIYQN 179 (218)
Q Consensus 174 ~~~~~~ 179 (218)
+.+++.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.82 E-value=2.3e-20 Score=151.08 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=102.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--CC-----CceeeeEEEEEEEECCeEEEEEEeeCcchhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ--------KFMPD--CP-----HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (218)
....++|+++|.+++|||||+++|++. .+... .+ ...+.+.......++.....+.||||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356799999999999999999999863 11110 00 0112222223333444456788999999999
Q ss_pred hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccc---cHHHHHHHHHhCC-
Q psy1169 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV---RYDEAKKFAEEND- 151 (218)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 151 (218)
|......++..+|++|+|+|+++....+. ..|+..+.. .++| +++++||+|+...... ..+++.+++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 98888889999999999999998765443 345444443 3678 8899999999753221 1234556666544
Q ss_pred ----CcEEEeccCCCCC
Q psy1169 152 ----LIFVEASAMTGEN 164 (218)
Q Consensus 152 ----~~~~~~S~~~~~~ 164 (218)
.+++++||+++.|
T Consensus 164 ~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGDEVPVIRGSALLALE 180 (405)
T ss_dssp CTTTSCEEECCHHHHHH
T ss_pred cccCCCEEEccHHHhhh
Confidence 6899999999876
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.82 E-value=2.7e-20 Score=154.45 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=84.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCC------------------C----CCCCceeeeEEEEEEEECCeEEEEEEe
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM------------------P----DCPHTIGVEFGTRIIEVHGEKIKLQIW 69 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~ 69 (218)
.....+|+|+|.+|+|||||+++|+...-. . +..+..+.......+.+ ..+.+.||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~li 87 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLL 87 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEE
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEE
Confidence 456789999999999999999999621100 0 00011112222223333 34678899
Q ss_pred eCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
||||+..|......+++.+|++|+|+|+++..+.+....|. .+. ..++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCS
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999999987777665543 233 247899999999998643
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=2.7e-19 Score=145.89 Aligned_cols=156 Identities=23% Similarity=0.236 Sum_probs=104.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC----------CCCce-------------------eeeEEEEEEEEC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD----------CPHTI-------------------GVEFGTRIIEVH 60 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~----------~~~~~-------------------~~~~~~~~~~~~ 60 (218)
....++|+++|..++|||||+++|++.. +... ..++. +.+.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 4567999999999999999999998643 1110 00110 111111111223
Q ss_pred CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--
Q psy1169 61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-- 138 (218)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-- 138 (218)
.....+.||||||++.|......++..+|++|+|+|+++....+.. .++..+... ...|+++++||+|+....+.
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL--GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEEcCcCCcccHHHH
Confidence 3345788999999999988888889999999999999987544333 333333332 12369999999999753211
Q ss_pred --cHHHHHHHHHhCC-----CcEEEeccCCCCCHHHHHH
Q psy1169 139 --RYDEAKKFAEEND-----LIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 139 --~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~~ 170 (218)
..++...++...+ ++++++||++|.|+++++.
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1244566666666 6799999999999987543
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.82 E-value=4.7e-21 Score=156.27 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=103.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCceeeeEEEEEEEECC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD-----------------------------CPHTIGVEFGTRIIEVHG 61 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (218)
...++|+++|..++|||||+++|+.. .+... ..+..+.+... ..++.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~--~~~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF--MRFET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE--EEEec
Confidence 45799999999999999999999864 32211 01112222222 22333
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhh----hcCCCC-eEEEEeeCCCCCCCc
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN----LTNPNT-VIFLIGNKMDLEGSR 136 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~-piivv~nK~Dl~~~~ 136 (218)
....+.||||||+++|......++..+|++|+|+|+++ .+|+....|..+... ....+. |+++++||+|+....
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 45678999999999999888899999999999999999 667644332221111 111244 589999999997521
Q ss_pred --c----ccHHHHHHHHHhCC-----CcEEEeccCCCCCHHHHHH
Q psy1169 137 --D----VRYDEAKKFAEEND-----LIFVEASAMTGENVEQAFL 170 (218)
Q Consensus 137 --~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~~ 170 (218)
+ ...+++..++...+ ++++++||++|.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 12345666666654 6799999999999986554
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=9e-20 Score=153.08 Aligned_cols=159 Identities=20% Similarity=0.168 Sum_probs=105.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CceeeeEEEEEE------------EECCeEEEEEEeeCcchhhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP----HTIGVEFGTRII------------EVHGEKIKLQIWDTAGQERF 77 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~ 77 (218)
+.++|+|+|++++|||||+++|++..+..... .+.+..+..... .+......+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998754432211 122221111000 00001125889999999999
Q ss_pred hhhhHhhhccCCEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc-------------H-
Q psy1169 78 RAVTRSYYRGAAGALMVYDITR---RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR-------------Y- 140 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-------------~- 140 (218)
..+...++..+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9988889999999999999999 555544332 222 578999999999986422100 0
Q ss_pred ---------HHHHHHHHhC---------------CCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 141 ---------DEAKKFAEEN---------------DLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 141 ---------~~~~~~~~~~---------------~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
.+........ ..+++++||++|.|++++++++...+...
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0111111111 23799999999999999999998877543
No 165
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=3e-20 Score=152.44 Aligned_cols=154 Identities=16% Similarity=0.080 Sum_probs=99.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc--------hhhhhhhhHhhh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG--------QERFRAVTRSYY 85 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~ 85 (218)
...+|+|+|.+|||||||+|+|++..+... ..+.+.+..............+.+|||+| .+.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 357999999999999999999988654321 22333333333444454556889999999 677778888899
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169 86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV 165 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (218)
+.+|++|+|+|..+..+... .|+..+. ...+.|+++|+||+|+..... ...++....-...+++||.++.|+
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l--~~~~~pvilV~NK~D~~~~~~----~~~e~~~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKIL--YRTKKPVVLAVNKLDNTEMRA----NIYDFYSLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHH--TTCCSCEEEEEECC-------------CCSGGGSSSSEEECCTTTCTTH
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHH--HHcCCCEEEEEECccchhhhh----hHHHHHHcCCCceEEeecccccch
Confidence 99999999999887544332 2332222 225799999999999854321 111122221224679999999999
Q ss_pred HHHHHHHHHHH
Q psy1169 166 EQAFLETAKKI 176 (218)
Q Consensus 166 ~~~~~~i~~~~ 176 (218)
.++++.+.+.+
T Consensus 173 ~~L~~~i~~~l 183 (456)
T 4dcu_A 173 GDLLDAVAEHF 183 (456)
T ss_dssp HHHHHHHHTTG
T ss_pred HHHHHHHHhhc
Confidence 99999887655
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=4.7e-20 Score=143.46 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=105.7
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCcee--------------------eeE-----------
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC------PHTIG--------------------VEF----------- 52 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~------~~~~~--------------------~~~----------- 52 (218)
.+....++|+|+|.+|||||||+++|++..+.+.. .++.. .+.
T Consensus 21 ~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~ 100 (299)
T 2aka_B 21 NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAET 100 (299)
T ss_dssp CTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 34566789999999999999999999988764221 11100 000
Q ss_pred ------------EEEEEEEC-CeEEEEEEeeCcchh-------------hhhhhhHhhhccCCEEE-EEEECCChhhHHH
Q psy1169 53 ------------GTRIIEVH-GEKIKLQIWDTAGQE-------------RFRAVTRSYYRGAAGAL-MVYDITRRSTYNH 105 (218)
Q Consensus 53 ------------~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~ 105 (218)
....+.+. .....+.||||||.. .+..+...+++.++.+| +|+|+++..+.+.
T Consensus 101 ~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 180 (299)
T 2aka_B 101 DRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180 (299)
T ss_dssp HHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred HHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence 00000000 012578899999953 35567778888888776 7999988655444
Q ss_pred HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC--C-CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 106 LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN--D-LIFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 106 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
...++..+. ..+.|+++|+||+|+........+......... + .+++++||+++.|++++++.+.+..
T Consensus 181 ~~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 181 ALKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 334444443 357899999999999765432222221100011 2 3578899999999999999988743
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=1.7e-20 Score=154.06 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=90.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeeEEEEEEEECC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-----------------------------DCPHTIGVEFGTRIIEVHG 61 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (218)
...++|+++|..++|||||+++|+. +.+.. +.....+.+.....+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 5679999999999999999999974 22110 000111111111122222
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh---hHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCc-
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSR- 136 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~- 136 (218)
...+.||||||++.|......++..+|++|+|+|+++.. +|+....|...+......++| +++++||+|+....
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 357889999999999888888899999999999999863 332222222222222224677 99999999995421
Q ss_pred --c---ccHHHHHHHHHhC-------CCcEEEeccCCCCCHHHHH
Q psy1169 137 --D---VRYDEAKKFAEEN-------DLIFVEASAMTGENVEQAF 169 (218)
Q Consensus 137 --~---~~~~~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~ 169 (218)
+ ...+++..++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 1123455555544 4669999999999998765
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2e-20 Score=157.85 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=100.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------------------------CCceeeeEEEEEEEECC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-------------------------------PHTIGVEFGTRIIEVHG 61 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 61 (218)
...++|+++|.+++|||||+++|++....... .+.++.+.....+ ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence 45789999999999999999999865321110 0111222222222 23
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh---HHHHHHHHHHHhhhcCCC-CeEEEEeeCCCCCCCcc
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YNHLSSWLTDTKNLTNPN-TVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~piivv~nK~Dl~~~~~ 137 (218)
....+.||||||++.|......++..+|++|+|+|+++... +.....+...+......+ .|+++|+||+|+...+.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 44678999999999999888889999999999999998531 100111111112112233 45999999999976433
Q ss_pred ccHH----HHHHHHHhC-----CCcEEEeccCCCCCHHHH
Q psy1169 138 VRYD----EAKKFAEEN-----DLIFVEASAMTGENVEQA 168 (218)
Q Consensus 138 ~~~~----~~~~~~~~~-----~~~~~~~S~~~~~~i~~~ 168 (218)
...+ ++..++... +++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 3222 233333332 468999999999999876
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=5.4e-19 Score=130.49 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=100.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----------hhhhhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAVT 81 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 81 (218)
.....+|+++|++|+|||||+++|.+..+.....++.+.......+.+++ .+.+||+||.. .+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999987664333344444433333333332 46799999963 233333
Q ss_pred Hhhh---ccCCEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHhCC--C
Q psy1169 82 RSYY---RGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEEND--L 152 (218)
Q Consensus 82 ~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~ 152 (218)
..++ ..++++++++|+.+..++.. +..|+ .. .+.|+++++||+|+....+ .....+.+++.... +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 4444 47889999999998765432 22332 21 4688999999999865322 12345666665543 4
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 153 IFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 153 ~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
.++++|++++.+++++++.|.+.+.
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6789999999999999998887653
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=4.3e-19 Score=155.90 Aligned_cols=159 Identities=15% Similarity=0.092 Sum_probs=105.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-------FMP-------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (218)
....++|+++|..++|||||+++|++.. +.. ....+.+.+.....+.++.....+.||||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567999999999999999999998631 000 00112222222222334444567899999999999
Q ss_pred hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccc---cHHHHHHHHHhCC--
Q psy1169 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV---RYDEAKKFAEEND-- 151 (218)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 151 (218)
......++..+|++|+|+|+++....+.. .++..+.. .++| +++++||+|+....+. ..+++..++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr-EhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHH-HHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHH-HHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888899999999999999987544333 34443333 3577 7899999999753321 1235566666554
Q ss_pred ---CcEEEeccCCCC--------CHHHHHHHHHH
Q psy1169 152 ---LIFVEASAMTGE--------NVEQAFLETAK 174 (218)
Q Consensus 152 ---~~~~~~S~~~~~--------~i~~~~~~i~~ 174 (218)
++++++||+++. |+.++++.|.+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 689999999993 46666655554
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=2.7e-21 Score=158.80 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=104.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (218)
++..+|+++|+.++|||||+++|....+.....+..+.+.....+..++ ..+.||||||++.|..+...++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4567999999999999999999987544333222222222122222232 46789999999999998888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHH--HHHHHHHhC--CCcEEEeccCCCCCHH
Q psy1169 93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYD--EAKKFAEEN--DLIFVEASAMTGENVE 166 (218)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~--~~~~~~~~~--~~~~~~~S~~~~~~i~ 166 (218)
+|+|+++....+....| ..+. ..++|+++++||+|+..... +..+ +...+...+ .++++++||++|.|++
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EEeecccCccHHHHHHH-HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99999885333333222 2222 24689999999999964321 1100 000011122 3689999999999999
Q ss_pred HHHHHHHH
Q psy1169 167 QAFLETAK 174 (218)
Q Consensus 167 ~~~~~i~~ 174 (218)
++|+++..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99998864
No 172
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=2.5e-18 Score=147.17 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=89.5
Q ss_pred ccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhC--CCC------C----------CCCCceeeeEEEEEEEECCeEEE
Q psy1169 4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFM------P----------DCPHTIGVEFGTRIIEVHGEKIK 65 (218)
Q Consensus 4 ~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~--~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~ 65 (218)
|...+..+.....+|+|+|..|+|||||+++|+.. .+. . +.....+.......+.+ ..+.
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~--~~~~ 78 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHR 78 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE--TTEE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE--CCeE
Confidence 44556667788999999999999999999999842 110 0 00111111111222222 2467
Q ss_pred EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
+.||||||+..|...+..+++.+|++|+|+|+++..+++....|.. +.. .++|+++++||+|+..
T Consensus 79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 8999999999999889999999999999999999888877766653 322 4789999999999864
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.77 E-value=4.7e-18 Score=129.82 Aligned_cols=122 Identities=13% Similarity=0.112 Sum_probs=81.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR------ 86 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------ 86 (218)
..++|+|+|..|+|||||+++|++..... ...+..+.......+..++ ..+.||||||++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 57999999999999999999999877522 2222222333333444444 47889999998766544333332
Q ss_pred ---cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCC--CeEEEEeeCCCCCCCcc
Q psy1169 87 ---GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN--TVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 87 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~Dl~~~~~ 137 (218)
.+|++|+|++++.......-..|+..+......+ .|+++|+||+|+...+.
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~ 168 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE 168 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence 7899999999987542222235666665544333 48999999999964433
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=4.3e-19 Score=145.46 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=100.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCceeeeEEEEEEEECC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD-----------------------------CPHTIGVEFGTRIIEVHG 61 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (218)
...++|+++|.+++|||||+++|++. .+... .....+.+..... ++.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~--~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK--FET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE--EEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE--Eec
Confidence 45699999999999999999999863 22110 0011122211222 233
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh---hH----HHHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TY----NHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE 133 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~ 133 (218)
....+.||||||++.|......++..+|++|+|+|+++.. +| +.... +..+.. .++| +++++||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~-~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREH-ALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHH-HHHHHH---TTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHH-HHHHHH---cCCCeEEEEEEccccc
Confidence 4467999999999999988888999999999999999863 22 22222 222222 3565 89999999996
Q ss_pred CCccc----cHHHHHHHHHhCC-----CcEEEeccCCCCCHHHH
Q psy1169 134 GSRDV----RYDEAKKFAEEND-----LIFVEASAMTGENVEQA 168 (218)
Q Consensus 134 ~~~~~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 168 (218)
...+. ..+++..++...+ ++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 42211 1234555555443 68999999999998754
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.76 E-value=7e-18 Score=143.91 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=82.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------ceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----------------TIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
.+...+|+|+|+.|+|||||+++|++......... ..+..+......+....+.+.||||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 35678999999999999999999985332110000 00112112222222235688899999999
Q ss_pred hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
.|......+++.+|++++|+|+.+....+.. .++..+.. .++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence 9988899999999999999999886554443 34443433 468999999999986
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=4.7e-19 Score=137.75 Aligned_cols=165 Identities=18% Similarity=0.281 Sum_probs=88.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC-CCCCCC--------CCceeeeEEEEEEEECCeEEEEEEeeCcch-------hh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ-KFMPDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ-------ER 76 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 76 (218)
...++|+|+|++|+|||||+++|.+. .+.... .++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998765 333221 111111111112222334568899999997 44
Q ss_pred hhhhhH-------hhhccC-------------CEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 77 FRAVTR-------SYYRGA-------------AGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 77 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
+..+.. .++... ++++|+.+.+. .+++.+. .++. ... ...++++|+||.|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~---~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMK---AIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHH---HHT-TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHH---HHH-hcCCEEEEEEeCCCCCH
Confidence 444443 444332 33444444322 1222222 2222 222 46789999999999765
Q ss_pred ccc--cHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169 136 RDV--RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183 (218)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (218)
+++ ..+++.+++...+++++++||+++ +++++|..+.+.+.+..+..
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~a 219 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPFS 219 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCce
Confidence 443 235678888888999999999999 99999999999988765533
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=8.1e-18 Score=135.54 Aligned_cols=159 Identities=15% Similarity=0.088 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----hhhhhH---hhhccCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTR---SYYRGAA 89 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~~d 89 (218)
.|+|+|++|||||||+++|.+........+..+.......+..++ ...+.+||++|... +..+.. ..+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987643211111112222233343333 24678999999632 111222 2345799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169 90 GALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167 (218)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (218)
.+++++|++ ...+..+..|.+++..+.. ...|.++++||+|+... ...++..+.....+..++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 6667777777666554431 25788999999998644 233445555566678899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1169 168 AFLETAKKIYQN 179 (218)
Q Consensus 168 ~~~~i~~~~~~~ 179 (218)
++++|.+.+.+.
T Consensus 315 L~~~i~~~l~~~ 326 (416)
T 1udx_A 315 LKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=8.9e-19 Score=139.70 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=104.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEE---------------------------------------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT--------------------------------------- 54 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 54 (218)
...+|+|+|++|||||||+++|++..+.+......+.....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45699999999999999999999977633322211100000
Q ss_pred -------------EEEEE-CCeEEEEEEeeCcchhhh-------------hhhhHhhhccCCEEEEEEECCChhhHHHHH
Q psy1169 55 -------------RIIEV-HGEKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLS 107 (218)
Q Consensus 55 -------------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 107 (218)
..+.+ ......+.+|||||...+ ..+...|++.+|++|+++|..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 00000 011235789999997654 567788999999999999876543221 2
Q ss_pred HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169 108 SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA 173 (218)
Q Consensus 108 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 173 (218)
.|+..+......+.|+++|+||+|+........+....+....+++|+++++..+.++++.+..+.
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 334444444445789999999999976655444444444455678899999998887776655433
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=1.6e-17 Score=142.25 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=108.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceee----eE----E-E----------------------------
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGV----EF----G-T---------------------------- 54 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~----~~----~-~---------------------------- 54 (218)
...++|+|+|.+|+|||||+|+|++..+.. ...+++.. .+ . .
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 457899999999999999999999876543 22222210 00 0 0
Q ss_pred ----------------EEEEECCeE--EEEEEeeCcchhhh---hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHH
Q psy1169 55 ----------------RIIEVHGEK--IKLQIWDTAGQERF---RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT 113 (218)
Q Consensus 55 ----------------~~~~~~~~~--~~~~i~D~~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 113 (218)
..+..+... ..+.||||||.... ......+++.+|++|+|+|+++..+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 001111100 35889999997653 345667889999999999999988877776655444
Q ss_pred hhhcCCCCeEEEEeeCCCCCCCccccH------H----HHHH-----HHHh--------CCCcEEEeccC----------
Q psy1169 114 KNLTNPNTVIFLIGNKMDLEGSRDVRY------D----EAKK-----FAEE--------NDLIFVEASAM---------- 160 (218)
Q Consensus 114 ~~~~~~~~piivv~nK~Dl~~~~~~~~------~----~~~~-----~~~~--------~~~~~~~~S~~---------- 160 (218)
.. .+.|+++|+||+|+.....+.. + .... +... ...+++++||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 32 3678999999999864431111 0 1111 1111 12468999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHh
Q psy1169 161 ----TGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 161 ----~~~~i~~~~~~i~~~~~~~ 179 (218)
++.|+++++..+.+.+.+.
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877554
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.75 E-value=5.6e-20 Score=154.68 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=82.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCceeeeEEEEEEEEC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK--FM-----------------------------PDCPHTIGVEFGTRIIEVH 60 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (218)
....++|+++|.+++|||||+++|+... +. .+..+.++.+... ..+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~--~~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAS--TTFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeE--EEEE
Confidence 4567899999999999999999996421 00 0111122222222 2223
Q ss_pred CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-------hHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCC
Q psy1169 61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-------TYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDL 132 (218)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl 132 (218)
.....+.||||||++.|......++..+|++|+|+|+++.. ..+.. ..+..+.. .++| +++|+||+|+
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~-e~l~~~~~---lgip~iIvviNKiDl 327 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR-EHAYLLRA---LGISEIVVSVNKLDL 327 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHH-HHHHHHHH---SSCCCEEEEEECGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHH-HHHHHHHH---cCCCeEEEEEecccc
Confidence 34468889999999998888888889999999999998642 11111 11222222 3465 8999999998
Q ss_pred CCCcccc----HHHHHHHH-HhCCC-----cEEEeccCCCCCHH
Q psy1169 133 EGSRDVR----YDEAKKFA-EENDL-----IFVEASAMTGENVE 166 (218)
Q Consensus 133 ~~~~~~~----~~~~~~~~-~~~~~-----~~~~~S~~~~~~i~ 166 (218)
....... ..++..+. ...++ +++++||++|.|+.
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 6532211 13344444 33343 69999999999997
No 181
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=1.5e-17 Score=130.19 Aligned_cols=164 Identities=10% Similarity=0.134 Sum_probs=98.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----ce-eeeEEEE-------------------------------
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----TI-GVEFGTR------------------------------- 55 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~----~~-~~~~~~~------------------------------- 55 (218)
....++|+|+|.+|+|||||+|+|++..+.+.... .. .......
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 35568999999999999999999998876322110 00 0000000
Q ss_pred ---------------------EEE-ECCeEEEEEEeeCcchhh-------------hhhhhHhhhccCCEEEEEEECCCh
Q psy1169 56 ---------------------IIE-VHGEKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRR 100 (218)
Q Consensus 56 ---------------------~~~-~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~ 100 (218)
.+. .......+.||||||... +......+++.+|++|+|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 011124688999999642 556777889999999999997443
Q ss_pred h-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC------CCCHHHHHHHHH
Q psy1169 101 S-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT------GENVEQAFLETA 173 (218)
Q Consensus 101 ~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~------~~~i~~~~~~i~ 173 (218)
. .......+...+ ...+.|+++|+||+|+........+.+.......+..++++++.. +.|+.++++.+.
T Consensus 181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 2 111111222222 235789999999999976543222222211111225677766653 678888888777
Q ss_pred HHHHH
Q psy1169 174 KKIYQ 178 (218)
Q Consensus 174 ~~~~~ 178 (218)
+.+.+
T Consensus 258 ~~~~~ 262 (315)
T 1jwy_B 258 LYFKN 262 (315)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 66643
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=2.4e-17 Score=136.94 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=79.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------------CCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC--------------------PHTIGVEFGTRIIEVHGEKIKLQIWDTA 72 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (218)
....+|+|+|.+|+|||||+++|+...-.... ....+.+.......+....+.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 56799999999999999999999863211000 0011111111111222234678899999
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
|+..|......++..+|++|+|+|+++....+. ..++..+. ..++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCccc
Confidence 999988888889999999999999998654332 22332222 357899999999998643
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.73 E-value=1.9e-17 Score=127.03 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=78.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh-------hHhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TRSY 84 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~ 84 (218)
...++|+|+|.+|+|||||+++|++..+.... .+..+... ....+......+.||||||...+... ...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP--VMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSC--EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceee--EEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987753211 11112222 22222223467889999998654321 1122
Q ss_pred --hccCCEEEEEEECCChhhHHH-HHHHHHHHhhhcCCC--CeEEEEeeCCCCCCCcc
Q psy1169 85 --YRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPN--TVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 85 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~piivv~nK~Dl~~~~~ 137 (218)
.+.+|++|+|+|++... +.. -..|+..+....+.+ .|+++|+||+|+...+.
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 34799999999987632 322 235666665543333 69999999999975543
No 184
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.73 E-value=1.2e-17 Score=132.53 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=90.4
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCC
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMD 131 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D 131 (218)
.+.+.+||++|++.++..+..++++++++|||+|+++ ..++.....|+..+.... -.++|+++++||.|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999999 778998888888776542 25799999999999
Q ss_pred CCCCc----------------cccHHHHHHHHH-----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 132 LEGSR----------------DVRYDEAKKFAE-----------ENDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 132 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
+...+ .+..+++..++. ...+.+++|||+++.|++++|+++.+.+++.
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 85322 255677777651 3457789999999999999999999988764
No 185
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=3.7e-17 Score=130.75 Aligned_cols=122 Identities=18% Similarity=0.185 Sum_probs=97.9
Q ss_pred EEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEE
Q psy1169 56 IIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDTKNLT-NPNTVIF 124 (218)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pii 124 (218)
.+.++ .+.+.|||++|++.++.+|..|+++++++|||||+++ ..+|+....|+..+.... ..++|++
T Consensus 211 ~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 34444 3789999999999999999999999999999999999 889999999998887653 3579999
Q ss_pred EEeeCCCCCCCcc---c---------------------------cHHHHHHHH-----Hh--------CCCcEEEeccCC
Q psy1169 125 LIGNKMDLEGSRD---V---------------------------RYDEAKKFA-----EE--------NDLIFVEASAMT 161 (218)
Q Consensus 125 vv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S~~~ 161 (218)
||+||.|+...+. + ..+++..++ .. ..+.+++|||++
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d 368 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD 368 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence 9999999843221 1 134555553 21 245678999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy1169 162 GENVEQAFLETAKKIYQN 179 (218)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (218)
+.||+++|.++.+.+++.
T Consensus 369 ~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 369 TENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999998888765
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=2.8e-16 Score=134.71 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=85.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------C-----CCceeeeEEEEEEEEC-----CeEEEEE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD-----------C-----PHTIGVEFGTRIIEVH-----GEKIKLQ 67 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~ 67 (218)
+..+..+|+|+|..|+|||||+++|+... +... . ....+.......+.+. +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 44678999999999999999999997531 1110 0 0111222112222222 2348899
Q ss_pred EeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
||||||+.+|......+++.+|++|+|+|+++....+....|.. +. ..++|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence 99999999998888999999999999999999876665554432 22 24789999999999854
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=134.20 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=81.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCC-------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDC-------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------ 78 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------ 78 (218)
.-.++|+|+|++|+|||||+++|.+..+. ... .++.........+...+....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 44588999999999999999999987653 211 1122211111111222334578999999975431
Q ss_pred -hh------------------hHhhhccCCEEEEEEECCCh-hhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 79 -AV------------------TRSYYRGAAGALMVYDITRR-STYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 79 -~~------------------~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
.+ ...++..+++.+++|..... .++.... .|+..+. .++|+++|+||+|+...++
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 11 12233445544444444432 2333332 4555443 3799999999999976655
Q ss_pred ccH--HHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 138 VRY--DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 138 ~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
+.. ..+.+++...+++++++|+.++.+++++|..+.+.
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 543 56777777889999999999999999877666543
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=3.8e-16 Score=133.75 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=84.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC-----------C-----CCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTE--QKFMPD-----------C-----PHTIGVEFGTRIIEVHGEKIKLQIWDTA 72 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (218)
+..+..+|+|+|.+|+|||||+++|+. ..+... + .+..+.......+.+. .+.+.|||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECc
Confidence 346789999999999999999999985 222100 0 0111111112222333 3678899999
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 135 (218)
|+..|......+++.+|++|+|+|+++..+++....|.. +.. .+.|+++++||+|+...
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 999988888999999999999999999887777655543 333 47899999999998643
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=3.4e-18 Score=132.96 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=107.0
Q ss_pred HHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHH
Q psy1169 30 CLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLS 107 (218)
Q Consensus 30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 107 (218)
+|+.++..+.|. ..+.+|.+..+. ..+..++ .+.+||+ ++++..++..+++++|++|+|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 678888888887 788888885543 2222222 6889999 8889999999999999999999999987 788889
Q ss_pred HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEEEeccCCCCCHHHHHHHHHH
Q psy1169 108 SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 108 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
.|+..+.. .++|+++|+||+|+...+.+ +++.+++..++ ++++++||+++.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99887654 47999999999999755432 44666666655 88999999999999999977653
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=2.2e-17 Score=132.67 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEE--E-------------------EECC-eEEEEEEeeCcc
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI--I-------------------EVHG-EKIKLQIWDTAG 73 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G 73 (218)
++|+|+|.+|||||||+|+|++........+..+.+..... + .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632222221121111111 1 1122 257899999999
Q ss_pred hhhh----hhhhH---hhhccCCEEEEEEECCCh
Q psy1169 74 QERF----RAVTR---SYYRGAAGALMVYDITRR 100 (218)
Q Consensus 74 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~ 100 (218)
.... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22233 346899999999999875
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.65 E-value=1.4e-17 Score=132.34 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=95.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------Ccee--------------------ee--------------
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP------HTIG--------------------VE-------------- 51 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~------~~~~--------------------~~-------------- 51 (218)
....++|+|+|.+|||||||+++|++..+.+... ++.. .+
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999999887642221 1100 00
Q ss_pred ---------EEEEEEEEC-CeEEEEEEeeCcchh-------------hhhhhhHhhhccCCEE-EEEEECCChhhHHHHH
Q psy1169 52 ---------FGTRIIEVH-GEKIKLQIWDTAGQE-------------RFRAVTRSYYRGAAGA-LMVYDITRRSTYNHLS 107 (218)
Q Consensus 52 ---------~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~ 107 (218)
.....+.+. .....+.||||||.. .+..+...|+...+.+ +++.|++....-....
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 000001110 113578999999952 3455677777666655 5566766533222222
Q ss_pred HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh--CC-CcEEEeccCCCCCHHHHHHHHHH
Q psy1169 108 SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE--ND-LIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 108 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
.++. .....+.|+++|+||+|+................. .+ .+++++||+++.|++++++.+.+
T Consensus 188 ~i~~---~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAK---EVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH---HHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHH---HhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2333 33335789999999999975443211111100000 12 24678999999999999988876
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=1.1e-16 Score=119.05 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=94.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE------------EEEEEECC------------------e
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG------------TRIIEVHG------------------E 62 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~ 62 (218)
....+|+|+|.+|+|||||+++|+..............+.. .....++. .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 34679999999999999999999864221111011110100 00111111 2
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHH
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE 142 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 142 (218)
...+.+|||+|.-... ..+....+.+++|+|+...... ...+... .+.|+++++||+|+...+....++
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHH
Confidence 3467899999841100 1111256889999998775421 1111111 146789999999985432234455
Q ss_pred HHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169 143 AKKFAEE--NDLIFVEASAMTGENVEQAFLETAKKIYQN 179 (218)
Q Consensus 143 ~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 179 (218)
+.+++.. ..++++++||+++.|++++++++.+.+...
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5555544 357899999999999999999998877543
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=7.1e-15 Score=116.12 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=90.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhhhhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERFRA 79 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~~ 79 (218)
.++|+++|.+|+|||||+++|.+........+..+.+.....+.+++. ...+.+||+||...+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 478999999999999999999987643322222122221223334432 25789999999765431
Q ss_pred ----h---hHhhhccCCEEEEEEECCCh----------hhHHHHHHHHHH------------------------------
Q psy1169 80 ----V---TRSYYRGAAGALMVYDITRR----------STYNHLSSWLTD------------------------------ 112 (218)
Q Consensus 80 ----~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------ 112 (218)
+ ...+++.+|++++|+|+++. ..+.++..+..+
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 2 22357899999999999862 122222111000
Q ss_pred ----------Hhh-------------------h-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 113 ----------TKN-------------------L-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 113 ----------~~~-------------------~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
+.. + .-...|+++++|+.|..-........++.++...+.+++++||+
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 100 0 11248999999999864222234567778888888899999976
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.63 E-value=5.8e-18 Score=126.40 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=87.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE------------EEEEEEC-CeEE----------------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG------------TRIIEVH-GEKI---------------- 64 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~---------------- 64 (218)
..++|+|+|.+|||||||+++|+...+...+.++...++. ...+.++ +..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999977554433334443332 1122221 1111
Q ss_pred ---EEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH
Q psy1169 65 ---KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141 (218)
Q Consensus 65 ---~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 141 (218)
.+.++|++|.-.. ...+-...+..+.++|......... ..... .+.|.++|+||+|+...+....+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 2333333331000 0001112233345555422111000 00000 13567999999998654334556
Q ss_pred HHHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 142 EAKKFAEE--NDLIFVEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 142 ~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
+..+++.. .+++++++||+++.|++++|+++.+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 66666654 36789999999999999999999887754
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=4e-15 Score=124.18 Aligned_cols=117 Identities=19% Similarity=0.152 Sum_probs=84.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC------------------CC----CCCCCceeeeEEEEEEEECCeEEEEEEe
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------------------FM----PDCPHTIGVEFGTRIIEVHGEKIKLQIW 69 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 69 (218)
..+.=+|+|+|..++|||||..+|+... +. .+..+.+++......+.+. .+.++|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEE
Confidence 3466789999999999999999997311 11 1222223333333333443 4678899
Q ss_pred eCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
||||+.+|..-....++-+|++|+|+|+.....-+...-|.. +.. .++|+++++||+|...
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccchh
Confidence 999999999999999999999999999999877666655543 333 5799999999999754
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.61 E-value=2e-15 Score=131.74 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=86.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC------------CCC----CCCC--ceeeeEEEEEEE------------ECC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------------FMP----DCPH--TIGVEFGTRIIE------------VHG 61 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~------------~~~----~~~~--~~~~~~~~~~~~------------~~~ 61 (218)
.....+|+|+|..++|||||+++|+... +.. +..+ ++........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998631 110 0111 211111122222 134
Q ss_pred eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
..+.+.||||||+.+|...+..+++.+|++|+|+|+.+..+++....|..... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 47899999999999999999999999999999999999988887766654332 478999999999985
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.60 E-value=9.3e-16 Score=121.93 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=70.5
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY-- 140 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-- 140 (218)
.+.+.||||||.... ....+..+|++|+|+|....+.++.+... + .+.|+++|+||+|+........
T Consensus 171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~ 239 (355)
T 3p32_A 171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAA 239 (355)
T ss_dssp TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHH
Confidence 367889999995432 23345889999999998776554332211 1 2468899999999853322111
Q ss_pred HHHHHHHH-------hCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 141 DEAKKFAE-------ENDLIFVEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 141 ~~~~~~~~-------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
.+...... .++.+++++||+++.|+++++++|.+.+.+
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11111111 125789999999999999999999888765
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.59 E-value=1.8e-15 Score=126.32 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=83.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCceeeeEEEEE-------------------------------
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRI------------------------------- 56 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~------------------------------- 56 (218)
.....++|+|+|.+|+|||||+|+|++..+. ....+++........
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3456799999999999999999999988763 222222111000000
Q ss_pred -----EEECCe-EEEEEEeeCcchhh-----------hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC
Q psy1169 57 -----IEVHGE-KIKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP 119 (218)
Q Consensus 57 -----~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 119 (218)
+.++.. ...+.||||||... +......++..+|++|+|+|+++....+....|+..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 000000 02578999999764 556777889999999999999886554555566655543 4
Q ss_pred CCeEEEEeeCCCCCCCc
Q psy1169 120 NTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 120 ~~piivv~nK~Dl~~~~ 136 (218)
+.|+++|+||+|+....
T Consensus 218 ~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp GGGEEEEEECGGGSCHH
T ss_pred CCCEEEEEECCCccCHH
Confidence 58899999999986543
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.55 E-value=5.7e-14 Score=106.96 Aligned_cols=111 Identities=15% Similarity=-0.012 Sum_probs=68.1
Q ss_pred EEEEEeeCcchhhhhhhhH------hhhccCCEEEEEEECCChhhHHHHHHHHHH-HhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 64 IKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
+.+.||||||......... ..+.. +++|+++|.........+...... .......+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999876543221 23455 788889987654333222221111 111112368899999999986543
Q ss_pred cccHHHHHHH----------------------------HHh--CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 137 DVRYDEAKKF----------------------------AEE--NDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 137 ~~~~~~~~~~----------------------------~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
.. +++.++ +.. ...+++++||+++.|++++++++.+.+.
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 21 111111 122 2347899999999999999999987664
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.53 E-value=2.2e-14 Score=113.93 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-------------------eEEEEEEeeCcchhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-------------------EKIKLQIWDTAGQER 76 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 76 (218)
++|+++|.+|+|||||+++|.+........+..+.+.......+++ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999987542211111111111122222221 235789999999765
Q ss_pred hh-------hhhHhhhccCCEEEEEEECCCh----------hhHHHHHHHHH----------------------------
Q psy1169 77 FR-------AVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLT---------------------------- 111 (218)
Q Consensus 77 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~---------------------------- 111 (218)
.. .....+++.+|++++|+|+++. ..+.++..+..
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 1233457899999999999862 11111110000
Q ss_pred -------H----Hhhh--------------------cCCCCeEEEEeeCCCC--CCC-ccccHHHHHHHHHhCCCcEEEe
Q psy1169 112 -------D----TKNL--------------------TNPNTVIFLIGNKMDL--EGS-RDVRYDEAKKFAEENDLIFVEA 157 (218)
Q Consensus 112 -------~----~~~~--------------------~~~~~piivv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (218)
. +... .-...|+++++||.|. .+. +......++.++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0 0000 0113799999999973 222 1234567778888778899999
Q ss_pred ccCCCCCHHHHH
Q psy1169 158 SAMTGENVEQAF 169 (218)
Q Consensus 158 S~~~~~~i~~~~ 169 (218)
||+.+.++.++.
T Consensus 242 SAk~E~el~eL~ 253 (368)
T 2dby_A 242 SARLEAELAELS 253 (368)
T ss_dssp CHHHHHHHHTSC
T ss_pred echhHHHHHHhc
Confidence 998765555443
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.53 E-value=6e-14 Score=111.12 Aligned_cols=103 Identities=9% Similarity=0.001 Sum_probs=62.3
Q ss_pred EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH
Q psy1169 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA 143 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 143 (218)
+.+.|+||+|.... .......+|++++|+|.+.....+.+.. .+ ...|.++|+||+|+....... ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 46789999996422 2334678999999999987643322221 11 135778999999985321110 111
Q ss_pred HHHHH----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 144 KKFAE----------ENDLIFVEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 144 ~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
..+.. .+..+++.+||+++.|+++++++|.+.+.+
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22211 124578999999999999999999887643
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.49 E-value=1.2e-12 Score=112.64 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=84.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhC--------CC------C----CCCCCceeeeEEEEEEEECC-----eEEEEE
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQ--------KF------M----PDCPHTIGVEFGTRIIEVHG-----EKIKLQ 67 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~--------~~------~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 67 (218)
+.++.-+|+|+|+.++|||||..+|+.. .. . .+..+.+++......+.+.+ ..+.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 3467789999999999999999999721 11 0 12222233333333333432 368899
Q ss_pred EeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133 (218)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 133 (218)
|+||||+.+|..-....++-+|++|+|+|+...-..+...-|.+... .++|.++++||+|..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 99999999999999999999999999999999876665555544333 479999999999974
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.48 E-value=5.8e-14 Score=110.99 Aligned_cols=104 Identities=10% Similarity=-0.004 Sum_probs=65.9
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY-- 140 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-- 140 (218)
.+.+.||||||...... .....+|++++|+|.+....++.+... . .+.|.++|+||+|+........
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHH
Confidence 35788999999765433 246899999999999765432211110 0 1367899999999864322211
Q ss_pred HHHHHHHHh-------CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 141 DEAKKFAEE-------NDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 141 ~~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
++....... +..+++++||+++.|++++++.|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 122222222 1456899999999999999999988764
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.47 E-value=1.7e-14 Score=122.65 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=80.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh--CCCCCC---CCC-----------ceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE--QKFMPD---CPH-----------TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~--~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (218)
.-+|+|+|..++|||||..+|+. +..... ... ..+.+.....+.+....+.++|+||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 34789999999999999999973 111110 000 01122222222333455678899999999999
Q ss_pred hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
......++-+|++|+|+|+...-.-+....|.. +.. .++|.++++||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~---~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK---MGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH---HTCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCeEEEEecccccc
Confidence 999999999999999999999766555444443 333 3688899999999743
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=1.4e-13 Score=117.80 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=98.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceee---------------------------------------
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGV--------------------------------------- 50 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~--------------------------------------- 50 (218)
..-...+|+|+|.+++|||||+|+|++..+.+ ....++..
T Consensus 47 ~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~ 126 (772)
T 3zvr_A 47 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 126 (772)
T ss_dssp GGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence 34567899999999999999999999877622 21111100
Q ss_pred -----------eEEEEEEEECCeEEEEEEeeCcchhh-------------hhhhhHhhh-ccCCEEEEEEECCChhhHHH
Q psy1169 51 -----------EFGTRIIEVHGEKIKLQIWDTAGQER-------------FRAVTRSYY-RGAAGALMVYDITRRSTYNH 105 (218)
Q Consensus 51 -----------~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~ 105 (218)
+.....+..++ ..++.|+||||... +..+...|+ ..+|++++|+|++.....++
T Consensus 127 ~~~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 127 RVTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HHHCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCH
T ss_pred hhcCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhH
Confidence 00001111111 12578999999432 333444555 57899999999987544333
Q ss_pred HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC----C-CcEEEeccCCCCCHHHHHHHHHHH
Q psy1169 106 LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN----D-LIFVEASAMTGENVEQAFLETAKK 175 (218)
Q Consensus 106 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~-~~~~~~S~~~~~~i~~~~~~i~~~ 175 (218)
...++..+. ..+.|+++|+||+|+......... ... .... + .+++.+||+++.|++++++.+.+.
T Consensus 206 ~l~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 206 ALKIAKEVD---PQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHHC---TTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHH---hcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 323333333 357899999999999765433221 111 0011 1 246789999999999999888763
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.44 E-value=5.5e-12 Score=100.17 Aligned_cols=155 Identities=16% Similarity=0.088 Sum_probs=96.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-------hhhhHhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-------RAVTRSYY 85 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~ 85 (218)
....+|+++|.|+||||||+|+|.+........+..+.+.....+.+++. .+.++|+||.... ....-..+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 44579999999999999999999986654444455566666667777664 5678899995421 11223456
Q ss_pred ccCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC--------CccccHHHHHHHHHhCCCcEEE
Q psy1169 86 RGAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG--------SRDVRYDEAKKFAEENDLIFVE 156 (218)
Q Consensus 86 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~ 156 (218)
+.+|++++|+|++++.. ++.+...+..+.... ...|.++++||.|... ......++.+.+...+.+..-+
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 78999999999998743 233333232222211 3567788999999632 1234445666666555443333
Q ss_pred eccCCCCCHHHHHH
Q psy1169 157 ASAMTGENVEQAFL 170 (218)
Q Consensus 157 ~S~~~~~~i~~~~~ 170 (218)
+-...+...+++.+
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 33334445555443
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=3.1e-12 Score=100.81 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=63.4
Q ss_pred EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHH
Q psy1169 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE 142 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 142 (218)
.+.+.|+||+|...... .....+|.+++++|.......+.+...+ . ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence 35788999999653221 2346899999999986543222111111 1 23457777999975433222222
Q ss_pred HHHHHHh----------CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 143 AKKFAEE----------NDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 143 ~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
.+.+... +..+++.+|++++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233221 1457899999999999999999887654
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.38 E-value=1.2e-12 Score=101.62 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=77.5
Q ss_pred hhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc-HHHHHHHHHhCC
Q psy1169 74 QERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR-YDEAKKFAEEND 151 (218)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 151 (218)
++++..+.+.++.++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+...+.+. .++..++....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 4566777778999999999999999986 88888889876654 579999999999996544322 345556666678
Q ss_pred CcEEEeccCCCCCHHHHHHHH
Q psy1169 152 LIFVEASAMTGENVEQAFLET 172 (218)
Q Consensus 152 ~~~~~~S~~~~~~i~~~~~~i 172 (218)
++++++||+++.|++++++.+
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHhhc
Confidence 899999999999999999654
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=103.97 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=52.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERF 77 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 77 (218)
...++|+++|.+|+|||||+++|.+..+.....+..+.+.....+.+++. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987654444444444444455555432 235899999997754
Q ss_pred hh-------hhHhhhccCCEEEEEEECCChhh
Q psy1169 78 RA-------VTRSYYRGAAGALMVYDITRRST 102 (218)
Q Consensus 78 ~~-------~~~~~~~~~d~~i~v~d~~~~~s 102 (218)
.+ ....+++.+|++++|+|+.+..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 45567899999999999986544
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=7.4e-11 Score=94.28 Aligned_cols=87 Identities=21% Similarity=0.189 Sum_probs=61.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQER 76 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~ 76 (218)
....+|.++|++|||||||+|.|.+... .....+..+.+.....+.+++. ...+.+||++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4457999999999999999999998765 4444444444444555555541 13678999999542
Q ss_pred -------hhhhhHhhhccCCEEEEEEECCC
Q psy1169 77 -------FRAVTRSYYRGAAGALMVYDITR 99 (218)
Q Consensus 77 -------~~~~~~~~~~~~d~~i~v~d~~~ 99 (218)
+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234456789999999999864
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.27 E-value=6.1e-12 Score=90.98 Aligned_cols=103 Identities=4% Similarity=-0.080 Sum_probs=67.2
Q ss_pred cchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHH---HHHh-hhc-CCCCeEEEEeeCC-CCCCCccccHHHHHH
Q psy1169 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL---TDTK-NLT-NPNTVIFLIGNKM-DLEGSRDVRYDEAKK 145 (218)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~-~~~-~~~~piivv~nK~-Dl~~~~~~~~~~~~~ 145 (218)
+|+..++.+|+.|+.++|++|||+|.+|.+-++ ....+ ..+. ... -.++|++|++||. |+... ....++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence 377889999999999999999999999975443 22222 1222 211 2578999999995 77433 34344333
Q ss_pred HHH----hCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 146 FAE----ENDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 146 ~~~----~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
... ...+.+..|||.+|.|+.+.++||.+.+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 322 13455889999999999999999987653
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=88.06 Aligned_cols=105 Identities=6% Similarity=-0.046 Sum_probs=72.0
Q ss_pred CcchhhhhhhhHhhhccCCEEEEEEECCChhhHH---HHHHHHHHHhhhc-CCCCeEEEEeeC-CCCCCCccccHHHHHH
Q psy1169 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN---HLSSWLTDTKNLT-NPNTVIFLIGNK-MDLEGSRDVRYDEAKK 145 (218)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~piivv~nK-~Dl~~~~~~~~~~~~~ 145 (218)
.+|++..+.+|+.|+.++|++|||+|++|.+-++ ++.++...+.... -.++|++|++|| .|+... ....++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHH
Confidence 3567788999999999999999999999986543 2222212222211 257999999996 687533 33344333
Q ss_pred HHH----hCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169 146 FAE----ENDLIFVEASAMTGENVEQAFLETAKKIY 177 (218)
Q Consensus 146 ~~~----~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 177 (218)
... ...+.+..|||.+|+|+.+.++|+.+.+.
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 322 13455889999999999999999998763
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=6.1e-09 Score=83.86 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=70.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeEEEEEEEEC--CeEEEEEEeeCcchhhh------------
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVH--GEKIKLQIWDTAGQERF------------ 77 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~------------ 77 (218)
..++++|+|++|+|||||++.|.+..+...... ..+.......+... +-...+.++|++|....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 346799999999999999999988654321110 01111111222222 22346789999884321
Q ss_pred --hhhh----Hhhh---------cc--CCE-EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc
Q psy1169 78 --RAVT----RSYY---------RG--AAG-ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR 139 (218)
Q Consensus 78 --~~~~----~~~~---------~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 139 (218)
...+ ..+. .. +|+ ++|+.|....-+..++ .++..+ ..++|+++|.||+|.....++.
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L----~~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL----DSKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT----CSCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH----hhCCCEEEEEcchhccchHHHH
Confidence 1111 1111 11 233 5566666654333332 222222 2579999999999976543321
Q ss_pred H--HHHHHHHHhCCCcEEEecc
Q psy1169 140 Y--DEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 140 ~--~~~~~~~~~~~~~~~~~S~ 159 (218)
. ..+.......+++++.+|.
T Consensus 196 ~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 196 KFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHcCCcEEecCC
Confidence 1 1222223345666666664
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.92 E-value=1.5e-10 Score=92.36 Aligned_cols=139 Identities=10% Similarity=0.075 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC------CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh--------hh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ------KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VT 81 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~ 81 (218)
.+|+++|.+|+|||||+|+|++. .......+..+ .....+.++.. +.++||||...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999875 22111111111 12223333322 67999999542211 11
Q ss_pred Hhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169 82 RSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 82 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
..++ +..+.++++++......+..+.. +......+.|+++++||.|..+..... .....+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCc
Confidence 2222 67788999998854311111111 233334578999999999987654433 3333444556666666665
Q ss_pred CCCCC
Q psy1169 160 MTGEN 164 (218)
Q Consensus 160 ~~~~~ 164 (218)
.+..+
T Consensus 313 ~~~~~ 317 (369)
T 3ec1_A 313 RYAAE 317 (369)
T ss_dssp GGTTT
T ss_pred hhhhh
Confidence 54333
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.89 E-value=6e-09 Score=85.85 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=82.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh------CCCC---CCC-CCce-----------eeeEEEEEEE-------------
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE------QKFM---PDC-PHTI-----------GVEFGTRIIE------------- 58 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~------~~~~---~~~-~~~~-----------~~~~~~~~~~------------- 58 (218)
.....|+|+|.+|+||||+++.|.. .... ... .+.. +.........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999972 2110 000 0000 0111000000
Q ss_pred ECCeEEEEEEeeCcchhhhh-hhh---Hhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeE-EEEeeCCC
Q psy1169 59 VHGEKIKLQIWDTAGQERFR-AVT---RSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMD 131 (218)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D 131 (218)
.....+.+.|+||||..... .+. ... .-.+|.+++|+|+....... .....+.. ..|+ ++|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCc
Confidence 00033578899999965321 111 111 22789999999998764311 11222222 2564 88999999
Q ss_pred CCCCccccHHHHHHHHHhCCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q psy1169 132 LEGSRDVRYDEAKKFAEENDLIF------------------VEASAMTGEN-VEQAFLETAKK 175 (218)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-i~~~~~~i~~~ 175 (218)
....... +.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8633221 111222233332 3478888888 88888777654
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=7.5e-09 Score=82.43 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=71.6
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH----HHH
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK----FAE 148 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~ 148 (218)
..+.|..+...+.+.++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+.... ...+...+ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788899999999999999999999863 24444444443 378999999999996543 22233333 355
Q ss_pred hCCC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 149 ENDL---IFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 149 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
..++ .++.+||+++.|++++++.+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 5666 689999999999999998886543
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.87 E-value=8.3e-11 Score=93.70 Aligned_cols=136 Identities=10% Similarity=0.105 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-----CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----h----hH
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-----DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----V----TR 82 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~----~~ 82 (218)
.+|+++|.+|+|||||+|+|++..... ......+.+.....+.+... +.++||||...... + ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999998753111 00111122222233333332 67999999643221 1 11
Q ss_pred hh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169 83 SY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 83 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
.+ .+..+..+++++......+..+.. +......+.|+++++||.|..+..... .....+.+..+..+++.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKLE-KADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEHH-HHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccHH-HHHHHHHHHhCCccCCCch
Confidence 11 356778888888743311111111 233334578999999999986554332 3333344445555444443
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.76 E-value=2.6e-08 Score=76.00 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=69.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------CCceeeeEEEEEEEECCe--EEEEEEeeCcchhh---------
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-------PHTIGVEFGTRIIEVHGE--KIKLQIWDTAGQER--------- 76 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~--------- 76 (218)
.++++|+|++|+|||||++.|.+......- ............+..... ...+.++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999864322110 000000000111111211 23678899988321
Q ss_pred ---------hhhhhHh----------hhccCCEEEEEEECC-ChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 77 ---------FRAVTRS----------YYRGAAGALMVYDIT-RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 77 ---------~~~~~~~----------~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
+...... .+..+++.++++|.. .+-...+ ...+..+. .. +++++|.+|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence 0000000 122357888888854 2222222 22333333 23 8999999999986543
Q ss_pred cccH--HHHHHHHHhCCCcEEE
Q psy1169 137 DVRY--DEAKKFAEENDLIFVE 156 (218)
Q Consensus 137 ~~~~--~~~~~~~~~~~~~~~~ 156 (218)
+... ..+.......++.+++
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 3221 2333344556666554
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.74 E-value=1.8e-07 Score=75.36 Aligned_cols=155 Identities=12% Similarity=0.163 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCce-eeeE--EEEEEEECCeEEEEEEeeCcchhhhh----h-hhHhhhc
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI-GVEF--GTRIIEVHGEKIKLQIWDTAGQERFR----A-VTRSYYR 86 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~----~-~~~~~~~ 86 (218)
...++|+|++|+|||||+|.|.+......-.-.. +.+. ...... ......+.+||++|..... . +...-+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999998743221110000 1000 011111 1111257889999854211 1 1111233
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC-------C----CccccHHHHHHHHH----hC-
Q psy1169 87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE-------G----SRDVRYDEAKKFAE----EN- 150 (218)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-------~----~~~~~~~~~~~~~~----~~- 150 (218)
..+..++ ++..... -+.+ .+...+.. .+.|+++|.||.|+. . .+....+.++++.. ..
T Consensus 148 ~~~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555 7765211 1111 12222222 358999999999863 1 11111223344431 22
Q ss_pred --CCcEEEecc--CCCCCHHHHHHHHHHHH
Q psy1169 151 --DLIFVEASA--MTGENVEQAFLETAKKI 176 (218)
Q Consensus 151 --~~~~~~~S~--~~~~~i~~~~~~i~~~~ 176 (218)
...++.+|+ .++.|++++.+.+.+.+
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 235788999 56667998888887665
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.73 E-value=2.1e-08 Score=79.90 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=70.0
Q ss_pred chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH----HHH
Q psy1169 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK----FAE 148 (218)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~ 148 (218)
.++.|.+....+++.++++++|+|+.+..+ .|...+.... .+.|+++|+||.|+.... ...+...+ ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467899999999999999999999999764 2333333333 368999999999996542 22233333 345
Q ss_pred hCCC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy1169 149 ENDL---IFVEASAMTGENVEQAFLETAKKI 176 (218)
Q Consensus 149 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~~ 176 (218)
..+. .++.+||+++.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5565 689999999999999998886543
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.69 E-value=6.9e-08 Score=74.08 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=69.8
Q ss_pred EeeCcchh-hhhhhhHhhhccCCEEEEEEECCChhhHH--HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHH
Q psy1169 68 IWDTAGQE-RFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAK 144 (218)
Q Consensus 68 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 144 (218)
|-..||+. .........+..+|++++|+|+.++.+.. .+..|+ .+.|.++|+||+|+.... ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 33578876 44455667789999999999999987753 333332 468999999999996521 112233
Q ss_pred HHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169 145 KFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178 (218)
Q Consensus 145 ~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 178 (218)
++....+.+++.+||.++.|++++++.+.+.+.+
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4444557789999999999999999888777654
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.41 E-value=1.2e-07 Score=71.95 Aligned_cols=57 Identities=19% Similarity=0.298 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (218)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 6999999999999999999997664321 1222222212222222 2567999999653
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.37 E-value=3.7e-07 Score=69.99 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=35.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (218)
...++++++|.+|+|||||+|+|.+....... ...+.+.....+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 45689999999999999999999976532211 1111111111222222 56799999964
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.35 E-value=5.2e-07 Score=73.04 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=50.6
Q ss_pred EEEEEeeCcchhhh-----hhhhH-hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169 64 IKLQIWDTAGQERF-----RAVTR-SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137 (218)
Q Consensus 64 ~~~~i~D~~G~~~~-----~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 137 (218)
+.+.|+||+|.... ..+.. .....+|.+++|+|+.....-. .....+.. .-.+..+|+||.|.....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~---~~~i~gVIlTKlD~~~~g- 255 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKE---ATPIGSIIVTKLDGSAKG- 255 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH---SCTTEEEEEECCSSCSSH-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHh---hCCCeEEEEECCCCcccc-
Confidence 67889999994321 11111 1233579999999998754322 22222222 123457899999975332
Q ss_pred ccHHHHHHHHHhCCCcEEEecc
Q psy1169 138 VRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
..+.......+.|+.+++.
T Consensus 256 ---G~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 256 ---GGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp ---HHHHHHHHTTCCCEEEEEC
T ss_pred ---cHHHHHHHHHCCCEEEEEc
Confidence 2344455567888877775
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.20 E-value=8.1e-06 Score=66.22 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=47.8
Q ss_pred EEEEEEeeCcchhhhhh-hh---Hhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCC-e-EEEEeeCCCCCC
Q psy1169 63 KIKLQIWDTAGQERFRA-VT---RSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNT-V-IFLIGNKMDLEG 134 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iivv~nK~Dl~~ 134 (218)
.+.+.|+||+|...... +. ... +..+|.+++|+|+..... .......+. ... | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 45778999999653211 11 111 226899999999876532 222222222 234 5 789999999743
Q ss_pred CccccHHHHHHHHHhCCCcEEEe
Q psy1169 135 SRDVRYDEAKKFAEENDLIFVEA 157 (218)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~ 157 (218)
.. ..+..+....+.++..+
T Consensus 253 ~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 KG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp TT----HHHHHHHHHSSCCEEEE
T ss_pred ch----HHHHHHHHHHCCCEEEe
Confidence 21 22334555566665555
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.19 E-value=1.8e-06 Score=72.47 Aligned_cols=65 Identities=20% Similarity=0.127 Sum_probs=40.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeEEEEEE--EE-CCeEEEEEEeeCcchhh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT-IGVEFGTRII--EV-HGEKIKLQIWDTAGQER 76 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~ 76 (218)
....++|+|+|.+|+|||||+|+|++....-....+ .........+ .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 356789999999999999999999986532111111 1111112221 11 12334678999999653
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.17 E-value=1e-06 Score=66.79 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=60.8
Q ss_pred Ccchhh-hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169 71 TAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE 149 (218)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (218)
.||+.. ........+..+|++|+|+|+.++.+.... . +. .. +.|.++|+||+|+..... .+...++...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 466652 233456678899999999999988664321 0 11 11 689999999999965321 1233344445
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169 150 NDLIFVEASAMTGENVEQAFLETAK 174 (218)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~~~~~i~~ 174 (218)
.+.++ .+||.++.|++++++.+.+
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67788 9999999999988876644
No 228
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.14 E-value=5.1e-06 Score=70.38 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.07 E-value=5.1e-06 Score=67.21 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=50.0
Q ss_pred EEEEEEeeCcchhh--h----hhhhHhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169 63 KIKLQIWDTAGQER--F----RAVTRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134 (218)
Q Consensus 63 ~~~~~i~D~~G~~~--~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 134 (218)
.+.+.|+||+|... . ....... .-..+.+++|+|+....... .....+.... .+..+|+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---PIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---SSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---CCcEEEEecccccc
Confidence 45677999999533 1 1111111 12468999999998753322 2222222211 34678999999753
Q ss_pred CccccHHHHHHHHHhCCCcEEEecc
Q psy1169 135 SRDVRYDEAKKFAEENDLIFVEASA 159 (218)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (218)
. ...+.......+.|+..++.
T Consensus 253 ~----~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 K----GGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp C----HHHHHHHHHHHTCEEEEEEC
T ss_pred c----chHHHHHHHHHCCCEEEEEC
Confidence 2 23344455557888877776
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.94 E-value=5.1e-06 Score=64.25 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=58.9
Q ss_pred hhHhhhccCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHHHHhCCCcEEE
Q psy1169 80 VTRSYYRGAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKFAEENDLIFVE 156 (218)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (218)
+.+..+.++|.+++|+|+.++.. ...+..++.... ..++|.++|+||+|+...... ..+...++....+.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 44456889999999999997644 444444443332 257889999999999765321 123333344445778999
Q ss_pred eccCCCCCHHHHH
Q psy1169 157 ASAMTGENVEQAF 169 (218)
Q Consensus 157 ~S~~~~~~i~~~~ 169 (218)
+|+.++.|+++++
T Consensus 156 ~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 156 TSSKDQDSLADII 168 (307)
T ss_dssp CCHHHHTTCTTTG
T ss_pred EecCCCCCHHHHH
Confidence 9999888877655
No 231
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.87 E-value=1.4e-06 Score=71.58 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=57.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--hhhhh--------H
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVT--------R 82 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 82 (218)
...+.|+++|.+|+||||+.++|...... ....+..+..........+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999998653211 0111111110000000011112345789988732 22222 4
Q ss_pred hhhccCCEEEEEEECCChhhHHHHHHHHHHHhh
Q psy1169 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN 115 (218)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (218)
.++...++.++|+|.++. +.+....|+..+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 566667888999999987 45555566555544
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.86 E-value=6.6e-05 Score=57.87 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=54.5
Q ss_pred EEEEEEeeCcchhh--hhh-hhH-----hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169 63 KIKLQIWDTAGQER--FRA-VTR-----SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE 133 (218)
Q Consensus 63 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~ 133 (218)
.+.+.|+||||... ... +.. .....+|.+++|+|..... ........+.. ..+ ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35788999999765 221 111 1244789999999987532 22222222222 244 67889999974
Q ss_pred CCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
.. ...+..+....+.|+..++. |.+++
T Consensus 253 ~~----~g~~~~~~~~~~~pi~~i~~--Ge~v~ 279 (297)
T 1j8m_F 253 AK----GGGALSAVAATGATIKFIGT--GEKID 279 (297)
T ss_dssp TT----HHHHHHHHHTTTCCEEEEEC--SSSTT
T ss_pred cc----hHHHHHHHHHHCcCEEEEeC--CCChh
Confidence 32 23455566778888877763 44444
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.82 E-value=7.8e-05 Score=58.81 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=55.7
Q ss_pred hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc-HHHHHHHHHhCCCcEEEeccCCC
Q psy1169 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR-YDEAKKFAEENDLIFVEASAMTG 162 (218)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~S~~~~ 162 (218)
...++|.+++|.+.....+...+..++-.... .++|.++|+||+|+....... .+.........+++++.+|+.++
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 36789999988776533444555555433333 357889999999996543210 11222333456888999999999
Q ss_pred CCHHHHHHH
Q psy1169 163 ENVEQAFLE 171 (218)
Q Consensus 163 ~~i~~~~~~ 171 (218)
.|++++...
T Consensus 204 ~gl~~L~~~ 212 (358)
T 2rcn_A 204 DGLKPLEEA 212 (358)
T ss_dssp BTHHHHHHH
T ss_pred cCHHHHHHh
Confidence 999887643
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.66 E-value=6.7e-05 Score=60.94 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.+..-|.|+|++++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 46778999999999999999999863
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.56 E-value=4.8e-05 Score=54.13 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998753
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=6.9e-05 Score=53.30 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999763
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.43 E-value=7.9e-05 Score=53.89 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.++|+|++|+|||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.40 E-value=5.9e-05 Score=55.87 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=16.0
Q ss_pred CccccCCCCCCcceee----EEEEEcCCCCCHHHHHHHHH-hC
Q psy1169 1 MKTMSSSGQYSYSYIF----KYIIIGDMGVGKSCLLHQFT-EQ 38 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~----ki~v~G~~g~GKStli~~l~-~~ 38 (218)
|.|+++....+-...+ -++|+|++|||||||++.|. +.
T Consensus 9 ~~~~~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cchhhhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 5566666555544433 58999999999999999998 54
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=0.00011 Score=52.52 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999753
No 240
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.31 E-value=0.00013 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
--++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358899999999999999997643
No 241
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.30 E-value=0.00018 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.|+|+|++|+||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999998864
No 242
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.30 E-value=0.00014 Score=52.01 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999753
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.30 E-value=0.00014 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999764
No 244
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.29 E-value=0.0053 Score=49.75 Aligned_cols=64 Identities=14% Similarity=0.065 Sum_probs=36.8
Q ss_pred EEEEEEeeCcchhhhhh-hhH-----hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169 63 KIKLQIWDTAGQERFRA-VTR-----SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE 133 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~ 133 (218)
.+.+.|+||||...... +.. .....++.+++|+|+..... +......+.. ..+ ..+|+||.|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH----HSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc----cCCCeEEEEecCCCC
Confidence 45788999999543211 111 12346889999999875432 2222222221 233 35789999974
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.28 E-value=0.00014 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999764
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.28 E-value=0.00014 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
-.++|+|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999764
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.28 E-value=0.00016 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.--|+|+|++|+|||||++.|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 345899999999999999999854
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.26 E-value=0.00016 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998743
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.22 E-value=0.00019 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-|+|+|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999865
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.20 E-value=0.00021 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999997654
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.16 E-value=0.00023 Score=50.13 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1169 17 KYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~ 36 (218)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999753
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.14 E-value=0.00024 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
+....|+|+|++|+|||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998865
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.14 E-value=0.00023 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++|+|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999886643
No 254
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.12 E-value=0.00028 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.-|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999753
No 255
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.10 E-value=0.00029 Score=50.28 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-++|+|++|+||||+++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.08 E-value=0.00028 Score=52.09 Aligned_cols=22 Identities=41% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998664
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.06 E-value=0.00035 Score=49.02 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+|+|++|+||||+.+.|.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998865
No 258
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.06 E-value=0.00034 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997653
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.05 E-value=0.00034 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999997654
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.03 E-value=0.00037 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.03 E-value=0.00043 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...|+|+|++|+|||||++.|.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.03 E-value=0.00036 Score=48.83 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy1169 16 FKYIIIGDMGVGKSCLLHQF 35 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l 35 (218)
+-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.02 E-value=0.00039 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.--|+|+|++|+||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999864
No 264
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.02 E-value=0.00036 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998664
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.01 E-value=0.00035 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++|+|++|||||||++.+.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999987643
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.01 E-value=0.00035 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998764
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.01 E-value=0.0005 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-|+|.|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 268
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.01 E-value=0.00045 Score=49.82 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 10 ~~~~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
......+.|+|.|++|+||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445567899999999999999998854
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.00 E-value=0.0004 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999843
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.99 E-value=0.00038 Score=49.96 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999999875
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.99 E-value=0.00038 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998654
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.99 E-value=0.00043 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 273
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.98 E-value=0.00059 Score=49.50 Aligned_cols=24 Identities=21% Similarity=-0.032 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.98 E-value=0.00047 Score=51.47 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~ 36 (218)
..|+|+|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 275
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.98 E-value=0.00048 Score=50.10 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
+.|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.98 E-value=0.0004 Score=54.77 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKF 40 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~ 40 (218)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999987543
No 277
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.97 E-value=0.0004 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999996643
No 278
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.96 E-value=0.0004 Score=52.64 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37899999999999999997643
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.96 E-value=0.00043 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 280
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.96 E-value=0.00043 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999998664
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.95 E-value=0.00043 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998664
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00051 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-|+|.|++||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.95 E-value=0.00043 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.94 E-value=0.0005 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999987643
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.94 E-value=0.00049 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999774
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.93 E-value=0.00046 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998664
No 287
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.93 E-value=0.00046 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|+|||||++.+.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.93 E-value=0.00051 Score=51.90 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.++|+|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999875
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.93 E-value=0.00037 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++++|++|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999765
No 290
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.93 E-value=0.00055 Score=48.40 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
..-++|+|++|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999753
No 291
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.92 E-value=0.00051 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999774
No 292
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.91 E-value=0.0023 Score=43.45 Aligned_cols=22 Identities=14% Similarity=0.230 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|++.|++|+|||++.+.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4599999999999999988844
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.00062 Score=49.09 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.|+++|++|+||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.90 E-value=0.00055 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|+|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.90 E-value=0.0006 Score=49.24 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 296
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.89 E-value=0.00059 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999998753
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.89 E-value=0.0005 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999764
No 298
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.89 E-value=0.00052 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987643
No 299
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.89 E-value=0.00048 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.++++|++|+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998865
No 300
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.89 E-value=0.00064 Score=48.38 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
....|+++|++|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988653
No 301
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.88 E-value=0.00052 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.87 E-value=0.00061 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.--|+|+|++|+||||+++.|.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.87 E-value=0.00067 Score=48.81 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 304
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.86 E-value=0.00056 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++++|++|+|||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 305
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.85 E-value=0.00063 Score=50.61 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1169 17 KYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~ 36 (218)
-++|+|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.85 E-value=0.00078 Score=47.94 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+|.|++|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 307
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.84 E-value=0.00059 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998764
No 308
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.84 E-value=0.0007 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.82 E-value=0.00095 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...|+|.|++|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 310
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.82 E-value=0.00078 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|+|++|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 311
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.82 E-value=0.00068 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
....-|+|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4557899999999999999998865
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.81 E-value=0.00087 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999965
No 313
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.81 E-value=0.017 Score=41.80 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=52.6
Q ss_pred EEEEEEeeCcch-hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH
Q psy1169 63 KIKLQIWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141 (218)
Q Consensus 63 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 141 (218)
.+.+.|+|+|+. ... .....+..+|.+|++...+. .+...+..+++.+.... +.++.+|+|+.|..... ...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGD 139 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHH
Confidence 357889999986 432 23456678999988887654 44555555555555432 45688999999864301 124
Q ss_pred HHHHHHHhCCCcEE
Q psy1169 142 EAKKFAEENDLIFV 155 (218)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (218)
++.+.....+.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 44455554555433
No 314
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.81 E-value=0.00069 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 315
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.81 E-value=0.00092 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
..++|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999853
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.79 E-value=0.00096 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 317
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.0024 Score=46.19 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy1169 18 YIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~ 37 (218)
+++.|++|+|||++++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998864
No 318
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.79 E-value=0.00085 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.+.|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.79 E-value=0.00087 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 320
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.78 E-value=0.00079 Score=50.89 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++++|++|+|||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997643
No 321
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.77 E-value=0.00088 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999997654
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.77 E-value=0.0011 Score=47.88 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=22.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
......|+|+|++|+||||+++.|...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344567999999999999999998653
No 323
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.77 E-value=0.00075 Score=52.08 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1169 17 KYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~ 36 (218)
-++++|++|+|||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.77 E-value=0.00087 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+++|++|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 325
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.75 E-value=0.00083 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
....|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 326
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.74 E-value=0.0012 Score=47.03 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|.|++|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.74 E-value=0.00085 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...|+|+|++|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999998853
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.73 E-value=0.0011 Score=50.66 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
....-|+|.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999965
No 329
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.72 E-value=0.00085 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~ 39 (218)
++++|++|||||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999997754
No 330
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.00046 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.+.|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.71 E-value=0.00078 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 332
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.70 E-value=0.00024 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
-.++|+|++|||||||+|.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 37899999999999999999754
No 333
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.69 E-value=0.00086 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|+.|+|||||++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998664
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.68 E-value=0.0011 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.68 E-value=0.001 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
..-|.|+|+.|+|||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998865
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.68 E-value=0.001 Score=49.12 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
....-|+|.|+.|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45567999999999999999998764
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.0014 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.66 E-value=0.001 Score=52.52 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~ 39 (218)
++|+|++|||||||++.+.+-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 6899999999999999987654
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.0014 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 340
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.65 E-value=0.001 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999997654
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.65 E-value=0.0014 Score=47.14 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
....|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3467999999999999999999764
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.64 E-value=0.0013 Score=46.25 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-+.|+|++|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.64 E-value=0.00096 Score=46.94 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
+|+|+|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998854
No 344
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.64 E-value=0.0012 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 345
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.64 E-value=0.0011 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|+|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998853
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.64 E-value=0.0012 Score=49.36 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=21.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.....+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344557899999999999999998854
No 347
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.63 E-value=0.00067 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999988653
No 348
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.63 E-value=0.0011 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999997653
No 349
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.0012 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999997754
No 350
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.61 E-value=0.0012 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~ 39 (218)
++++|++|+|||||++.+.+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 6899999999999999997754
No 351
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.0097 Score=46.61 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy1169 18 YIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~ 37 (218)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 352
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.60 E-value=0.0012 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.++|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999865
No 353
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.60 E-value=0.0012 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.--++|+|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999999863
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.60 E-value=0.0019 Score=46.45 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.....|+|.|++|+||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998863
No 355
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.59 E-value=0.00085 Score=46.12 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.58 E-value=0.0011 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 357
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.58 E-value=0.0019 Score=49.51 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
....-|+|+|++|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988753
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.57 E-value=0.0013 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36899999999999999997653
No 359
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.57 E-value=0.0013 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999997754
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.57 E-value=0.0013 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 361
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.56 E-value=0.0022 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=22.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
....+-|.|+|++|||||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567799999999999999998854
No 362
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0014 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.--++++|++|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999864
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.55 E-value=0.0016 Score=46.82 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
...|+|.|++||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998654
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.54 E-value=0.0015 Score=47.80 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy1169 18 YIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~ 37 (218)
|+|+|+|||||+|...+|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998854
No 365
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.53 E-value=0.0016 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.+.|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998854
No 366
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.53 E-value=0.0015 Score=48.99 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
......|+++|++|+||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999864
No 367
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.53 E-value=0.0015 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-|+|+|++|+|||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999853
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.52 E-value=0.0014 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
....-|+|+|++|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999876
No 369
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.52 E-value=0.0015 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999764
No 370
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.51 E-value=0.0015 Score=50.96 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=48.1
Q ss_pred EEEEeeCcchhhhhh-----hhH-hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169 65 KLQIWDTAGQERFRA-----VTR-SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138 (218)
Q Consensus 65 ~~~i~D~~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 138 (218)
.+.++|++|...... +.. .-.-..|-.++++|..... ++......+.... ..-++++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCccc---
Confidence 455789999532111 110 0112468889999976653 2223333333211 123788899996322
Q ss_pred cHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169 139 RYDEAKKFAEENDLIFVEASAMTGENVE 166 (218)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (218)
...+.......+.|+..++ +|.+++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 1334455666788877777 444443
No 371
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.50 E-value=0.0019 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
....-|+|+|++|+|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998864
No 372
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.49 E-value=0.0017 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.++|.|++|+|||++++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 373
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.49 E-value=0.0014 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|+|++|+|||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999764
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.48 E-value=0.0019 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 375
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.47 E-value=0.0017 Score=46.32 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 376
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.46 E-value=0.0016 Score=51.83 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.++|+|++|+||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 377
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.46 E-value=0.0015 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...|+|.|++|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 378
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.45 E-value=0.002 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.45 E-value=0.001 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 37899999999999999997654
No 380
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.45 E-value=0.0028 Score=44.97 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...|+|+|.+|+||||+++.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
No 381
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.45 E-value=0.0018 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999854
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.44 E-value=0.00066 Score=49.29 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 383
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.43 E-value=0.0017 Score=51.94 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998764
No 384
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.43 E-value=0.0013 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
--++|+|+.|||||||++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999998753
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.43 E-value=0.0019 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~ 36 (218)
..|+|+|++|+||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999886
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.43 E-value=0.0021 Score=47.48 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...|+|+|++|+||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998854
No 387
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.42 E-value=0.0015 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987643
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.41 E-value=0.0019 Score=45.10 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 389
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.39 E-value=0.002 Score=47.16 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 390
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.39 E-value=0.0019 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 391
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.38 E-value=0.0019 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999764
No 392
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.36 E-value=0.002 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999875
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.36 E-value=0.0023 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.36 E-value=0.0022 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999764
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.35 E-value=0.0021 Score=45.47 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|+|+|++|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998854
No 396
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.33 E-value=0.0022 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.--++++|++|+||||++..|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999998864
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.30 E-value=0.001 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999997754
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.29 E-value=0.0029 Score=46.14 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 399
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.28 E-value=0.0026 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 400
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.27 E-value=0.0016 Score=45.98 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=15.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.26 E-value=0.0023 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++||||||+++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999997644
No 402
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.25 E-value=0.0025 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.--++|+|++|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999864
No 403
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.22 E-value=0.0091 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~ 36 (218)
....=|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 466778899999999999999664
No 404
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.22 E-value=0.0026 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.22 E-value=0.0032 Score=43.84 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0029 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.|+|+|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0026 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
-.++|+|++|+|||||++.|.+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998753
No 408
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.20 E-value=0.0024 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.++|.|++|+|||++++.+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999998864
No 409
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.20 E-value=0.004 Score=45.75 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=20.9
Q ss_pred CccccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 1 MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
|.|+.+.+... ...-|+|.|..|+||||+++.|..
T Consensus 9 ~~~~~~~~~~~--~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 9 MGTLEAQTQGP--GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ----------C--CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccccccccCC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 45666665544 356799999999999999998853
No 410
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.20 E-value=0.0033 Score=43.13 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy1169 18 YIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~ 36 (218)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999975
No 411
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.19 E-value=0.0032 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHH
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQF 35 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l 35 (218)
....+||+|+|.+|+|||||++.+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 356799999999999999999886
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.19 E-value=0.0031 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
..-|+|+|++|+||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998854
No 413
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.19 E-value=0.0031 Score=48.07 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...+.|+|.|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999863
No 414
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.19 E-value=0.003 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.++++|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999865
No 415
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.18 E-value=0.0032 Score=46.63 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
..+.|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998853
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.17 E-value=0.0032 Score=45.77 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 417
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.17 E-value=0.0031 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 418
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.16 E-value=0.0032 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
No 419
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.16 E-value=0.078 Score=40.89 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999653
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.15 E-value=0.0045 Score=45.66 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...-|+|.|++|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 421
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.14 E-value=0.002 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
......|+|.|..|+||||+++.|..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998854
No 422
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.14 E-value=0.0034 Score=45.11 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998865
No 423
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.04 E-value=0.0046 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-|+|.|++|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 424
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.01 E-value=0.0038 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999864
No 425
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.00 E-value=0.0034 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=17.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...-|+|.|++|+||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999998853
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.00 E-value=0.0042 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998754
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.99 E-value=0.0043 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++++|++|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
No 428
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.017 Score=42.34 Aligned_cols=28 Identities=7% Similarity=-0.121 Sum_probs=22.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 12 ~~~~~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
+++.+-|++-|+++.|||+|++++.+..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 3555666666999999999999997763
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.96 E-value=0.0042 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
--++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 430
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.94 E-value=0.0051 Score=41.81 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
..|++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999987643
No 431
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0039 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999987643
No 432
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.93 E-value=0.022 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
-.+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999653
No 433
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.93 E-value=0.0056 Score=43.91 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-+.|.+.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.93 E-value=0.0047 Score=45.19 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998864
No 435
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.91 E-value=0.004 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.+++.|++|+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888864
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0063 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
-++++|++|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999997643
No 437
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.87 E-value=0.0045 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999998664
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.86 E-value=0.0058 Score=45.18 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=21.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 11 SYSYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 11 ~~~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.......|+|+|++|+||||+.+.|..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345556899999999999999998864
No 439
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.85 E-value=0.005 Score=48.77 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy1169 18 YIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~ 36 (218)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5599999999999999986
No 440
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.82 E-value=0.0068 Score=46.72 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-|+|+|++|+|||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3588999999999999999964
No 441
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.82 E-value=0.0052 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34789999999999999999975
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.82 E-value=0.0052 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998874
No 443
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.80 E-value=0.0052 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987643
No 444
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.79 E-value=0.0058 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999865
No 445
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.76 E-value=0.0058 Score=46.37 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345999999999999999999653
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.75 E-value=0.0055 Score=49.43 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
...-|+|+|++|+||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999864
No 447
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.75 E-value=0.0073 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
+...-+++.|++|+|||+|++.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3345678889999999999999864
No 448
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.72 E-value=0.0061 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
-.+++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999753
No 449
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.72 E-value=0.0061 Score=46.83 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=47.2
Q ss_pred EEEEEEeeCcchhhhhh-hh---Hhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169 63 KIKLQIWDTAGQERFRA-VT---RSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136 (218)
Q Consensus 63 ~~~~~i~D~~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 136 (218)
.+.+.|+||+|...... .. ...+. ..+.+++|+|.+.. .+.+..+...+.. -+ ..-+++||.|.....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~~ 255 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTSL 255 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSCC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccch
Confidence 34678999999654321 11 12222 35678889987653 2334333322221 11 234667999975322
Q ss_pred cccHHHHHHHHHhCCCcEEEec
Q psy1169 137 DVRYDEAKKFAEENDLIFVEAS 158 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~S 158 (218)
..+...+...++|+..+.
T Consensus 256 ----g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 ----GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ----HHHHHHHHTCSCCCSEEC
T ss_pred ----hHHHHHHHHHCcCEEEEE
Confidence 355566667788765544
No 450
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.71 E-value=0.0061 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999865
No 451
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.71 E-value=0.033 Score=39.83 Aligned_cols=84 Identities=7% Similarity=-0.043 Sum_probs=53.8
Q ss_pred EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCCCccccHH
Q psy1169 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMDLEGSRDVRYD 141 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~ 141 (218)
+.+.|+|+|+.. .......+..+|.+|++...+... ..+..+++.+.... ..+.++.+|+|+.|... . ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HHH
Confidence 678899999865 334455677799999999876655 55556565555443 24567899999998421 1 223
Q ss_pred HHHHHHHhCCCcE
Q psy1169 142 EAKKFAEENDLIF 154 (218)
Q Consensus 142 ~~~~~~~~~~~~~ 154 (218)
+..++....+.++
T Consensus 149 ~~~~~l~~~~~~v 161 (206)
T 4dzz_A 149 VLKESIKDTGVKA 161 (206)
T ss_dssp HHHHHHHHHTCCB
T ss_pred HHHHHHHHcCCce
Confidence 4444444444443
No 452
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.70 E-value=0.0075 Score=44.46 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-++..|+|++||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999998853
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.66 E-value=0.0084 Score=46.02 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~ 36 (218)
.....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998664
No 454
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.64 E-value=0.0072 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 455
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.64 E-value=0.0065 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.63 E-value=0.0089 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++++|++|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999987643
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.63 E-value=0.0062 Score=50.81 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.++|+|++|+|||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997643
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.62 E-value=0.0076 Score=43.30 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
.|.|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 459
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.61 E-value=0.0078 Score=43.31 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999997654
No 460
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.61 E-value=0.0072 Score=44.62 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 461
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.61 E-value=0.0069 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
--++|.|++|+|||||++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 462
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.60 E-value=0.0048 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998664
No 463
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.56 E-value=0.008 Score=46.40 Aligned_cols=87 Identities=22% Similarity=0.126 Sum_probs=46.6
Q ss_pred EEEEEeeCcchhhhhh-----h--hHhhh-----ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169 64 IKLQIWDTAGQERFRA-----V--TRSYY-----RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131 (218)
Q Consensus 64 ~~~~i~D~~G~~~~~~-----~--~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 131 (218)
+.+.|+|+||...... + ....+ ...+.+++|+|.... .+.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 4578999999522111 1 11111 247888999998743 122221 12222211 1 2356789999
Q ss_pred CCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169 132 LEGSRDVRYDEAKKFAEENDLIFVEASAM 160 (218)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (218)
....- ..+.......++|+.++..-
T Consensus 261 ~~~~g----G~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 261 GTAKG----GITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp GCSCT----THHHHHHHHHCCCEEEEECS
T ss_pred Cccch----HHHHHHHHHHCCCEEEEeCC
Confidence 63221 23556666778887776553
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.55 E-value=0.0054 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988653
No 465
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.54 E-value=0.012 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.++++|++|+|||++++.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 34799999999999999998865
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.53 E-value=0.0083 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
..|+|+|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 467
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.52 E-value=0.0084 Score=43.34 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy1169 18 YIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~ 36 (218)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999874
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.51 E-value=0.0079 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 469
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.008 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~~ 39 (218)
++|+|++|+|||||++.+.+..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998754
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.47 E-value=0.0044 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5889999999999999987553
No 471
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.47 E-value=0.0089 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 472
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.47 E-value=0.0086 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 473
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.0086 Score=46.79 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998653
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.44 E-value=0.0091 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 475
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.44 E-value=0.014 Score=44.06 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 13 ~~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
...-.+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34467999999999999999998653
No 476
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.42 E-value=0.011 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~ 36 (218)
..+|+++|++|+||||+.+.|.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4589999999999999998764
No 477
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.35 E-value=0.0061 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988653
No 478
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.34 E-value=0.011 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-|+|+||+|+|||||...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999653
No 479
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.33 E-value=0.011 Score=46.13 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~ 37 (218)
-|+|+|+.|+|||||...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 480
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.33 E-value=0.01 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~ 38 (218)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999753
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.29 E-value=0.014 Score=40.94 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~~~ 39 (218)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999998754
No 482
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.23 E-value=0.013 Score=52.12 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQKF 40 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~~~ 40 (218)
.++|+|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999987544
No 483
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.22 E-value=0.013 Score=41.51 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy1169 18 YIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~~ 38 (218)
++|+|.+|+|||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999754
No 484
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.012 Score=46.01 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy1169 18 YIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~ 37 (218)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998864
No 485
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.20 E-value=0.01 Score=46.85 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.++|.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.19 E-value=0.015 Score=43.07 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-|+|.|..|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999865
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.16 E-value=0.011 Score=49.18 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy1169 18 YIIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~ 36 (218)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 488
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.16 E-value=0.013 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.13 E-value=0.012 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999965
No 490
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.013 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
--|++.||||+|||+|++.+.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999965
No 491
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.10 E-value=0.012 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 492
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.10 E-value=0.0073 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169 14 YIFKYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 14 ~~~ki~v~G~~g~GKStli~~l~~~ 38 (218)
....|+|+|++|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3457999999999999999998653
No 493
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.09 E-value=0.0059 Score=45.92 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy1169 18 YIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 18 i~v~G~~g~GKStli~~l~~ 37 (218)
+++.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999865
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.07 E-value=0.015 Score=44.84 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 495
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.014 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
.-.|++.||||+|||.|++.+.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 496
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.06 E-value=0.015 Score=42.37 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 15 ~~ki~v~G~~g~GKStli~~l~~ 37 (218)
..-|+|.|++|+||||+++.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998853
No 497
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.04 E-value=0.014 Score=45.66 Aligned_cols=18 Identities=50% Similarity=0.772 Sum_probs=16.5
Q ss_pred EEEcCCCCCHHHHHHHHH
Q psy1169 19 IIIGDMGVGKSCLLHQFT 36 (218)
Q Consensus 19 ~v~G~~g~GKStli~~l~ 36 (218)
+|+|+.|+|||||++.+.
T Consensus 27 ~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 699999999999999874
No 498
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.03 E-value=0.014 Score=45.53 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy1169 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (218)
Q Consensus 17 ki~v~G~~g~GKStli~~l~~~ 38 (218)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998753
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.01 E-value=0.014 Score=47.48 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 500
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.01 E-value=0.014 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy1169 16 FKYIIIGDMGVGKSCLLHQFTE 37 (218)
Q Consensus 16 ~ki~v~G~~g~GKStli~~l~~ 37 (218)
-.++++|++|+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 3679999999999999998864
Done!