BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11691
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CO8|A Chain A, Solution Structures Of The Lim Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 82
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTG 143
C+LCGE +Y+ +R N FHR+CF+C C++ L YE H G
Sbjct: 18 CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLW-PGGYEQHPG 62
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of MlpCRP3
Length = 58
Score = 44.3 bits (103), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C CG+ VY A++ + +H+TCF+CA C L N + G+ C+VC
Sbjct: 2 CPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK-DGELYCKVC 53
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 78 APRAPSQPPSTLPGSLKLNS---CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTC 134
+P P+ P+T + K CS CG+ VY A++ + +H+ CF+CA+C L
Sbjct: 16 SPHRPTTNPNTSKFAQKFGGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLES 75
Query: 135 INAYETHTGQFCCEVC 150
E G+ C+ C
Sbjct: 76 TTLTEKE-GEIYCKGC 90
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of MlpCRP3
Length = 60
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C + VY A+ N R FH+TCF C C+ L H + C+VC
Sbjct: 4 CGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTV-AAHESEIYCKVC 55
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 78 APRAPSQPPSTLPGSLKLNS---CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTC 134
+P P+ P+T + K CS CG+ VY A++ + +H+ CF+CA+C L
Sbjct: 16 SPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLES 75
Query: 135 INAYETHTGQFCCEVC 150
E G+ C+ C
Sbjct: 76 TTLTEKE-GEIYCKGC 90
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And Glycine-
Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 96 NSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
N C CG VY A+ + R FHR CF C C+ L H + C+ C
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTV-AIHDAEVYCKSC 61
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 96 NSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
+ C CG+ VY A++ + +H++CF+CA+C L + G+ C+ C
Sbjct: 9 DGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADK-DGEIYCKGC 62
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 75 EPGAPRAPSQPPST-----LPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQ 129
E G P+ P ++ + GS + C CG+ VY A++ + +H++CF+CA+C
Sbjct: 93 EEGQSHRPTNPNASRMAQKVGGS---DGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCG 149
Query: 130 SQL 132
L
Sbjct: 150 KSL 152
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQL 132
C +C + VY A+ FH++CF C C+ L
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNL 44
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The N-
Terminal Lim Domain Of Lmo4
Length = 122
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNAR--LFHRTCFKCARCQSQLTCINAYE-THTGQFCC 147
GSL C+ CG K+ A RF A +H C KC+ CQ+QL I T +G C
Sbjct: 1 GSLSWKRCAGCGGKI--ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 58
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 37.0 bits (84), Expect = 0.012, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C ++VY A+R + +HR C KC +C LT E +C C
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPC 55
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNAR--LFHRTCFKCARCQSQL 132
GSL C+ CG K+ A RF A +H C KC+ CQ+QL
Sbjct: 1 GSLSWKRCAGCGGKI--ADRFLLYAMDSYWHSRCLKCSSCQAQL 42
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 35.8 bits (81), Expect = 0.025, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 96 NSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
+ C C + VY A++ + + +H+ C KC RC LT E FC + C
Sbjct: 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPC 64
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial Protein
Lost In Neoplasm
Length = 91
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 97 SCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCE 148
+C C + VY +R N ++FH +CF+C+ C ++L+ + Y + G+ C+
Sbjct: 17 TCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLS-LGTYASLHGRIYCK 67
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 93 LKLNSCSLCGEKVYLAQRFAFNAR--LFHRTCFKCARCQSQL 132
L C+ CG K+ A RF A +H C KC+ CQ+QL
Sbjct: 1 LSWKRCAGCGGKI--ADRFLLYAMDSYWHSRCLKCSSCQAQL 40
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 98 CSLCGEKVYLAQRFAFNAR--LFHRTCFKCARCQSQLTCINAYE-THTGQFCCE 148
C+ CG K+ A RF A +H C KC+ CQ+QL I T +G C
Sbjct: 64 CAGCGGKI--ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCR 115
>pdb|1EYY|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi
Length = 510
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 183 LNSDKSTNLL--TDSEPSTHCDSNLVTASVESTNMERNMDNDDLNILNKCTTDDDKVNSV 240
LN+ K +LL SE D + A +E+ E + + N+ D VNS
Sbjct: 49 LNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADVVNSG 108
Query: 241 QNSIRFFDNPAPTK---PKPDM-KQYNAIMMISIY 271
D P PT+ PKPD+ +Q A+ ++++
Sbjct: 109 SYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVF 143
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
GS + C CGE + A N +H CF+C CQ L I + + G+ C C
Sbjct: 1 GSSGSSGCHQCGEFIIGRVIKAMNNS-WHPECFRCDLCQEVLADI-GFVKNAGRHLCRPC 58
Query: 151 PDEEERS 157
+ E+ S
Sbjct: 59 HNREKAS 65
>pdb|1X61|A Chain A, Solution Structure Of The First Lim Domain Of Thyroid
Receptor Interacting Protein 6 (Trip6)
Length = 72
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 116 RLFHRTCFKCARCQSQLTCINAYETHTGQFC 146
R+FH CF C+ C++QL + Y +C
Sbjct: 27 RVFHVGCFVCSTCRAQLRGQHFYAVERRAYC 57
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 89 LPGSLKLNSCSLCGEKVYLAQRFA-FNARLFHRTCFKCARCQSQLTCINAYETHTGQFC 146
+ +L +C C A++ N L+H CF CA+C Q YE ++C
Sbjct: 5 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYC 63
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 114 NARLFHRTCFKCARCQSQLTCINAYETHTGQFC 146
N L+H CF CA+C Q YE ++C
Sbjct: 31 NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYC 63
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 116 RLFHRTCFKCARCQSQLTCINAYETHTGQFCCE 148
+++H CFKCA CQ + + Y CE
Sbjct: 32 KVYHLECFKCAACQKHFSVGDRYLLINSDIVCE 64
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 89 LPGSLKLNSCSLCGEKVYLAQRFA-FNARLFHRTCFKCARCQSQLTCINAYETHTGQFC 146
+ +L +C C A++ N L+H CF CA+C Q YE ++C
Sbjct: 1 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYC 59
>pdb|2EHE|A Chain A, Solution Structure Of The First Lim Domain From Human Four
And A Half Lim Domains Protein 3
Length = 82
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 96 NSCSLCGEKV-YLAQRFAFNARLFHRTCFKCARCQSQLT 133
N+C+ C + + + ++ + R FH CF+C RCQ L
Sbjct: 16 NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA 54
>pdb|2DE2|A Chain A, Crystal Structure Of Desulfurization Enzyme Dszb
Length = 365
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 31 GVAAARYLFHSIDLGDQLTNSNTDNPLSLPGVDVPQKTTSPAHREPGAPRAP 82
G AR L H+++ G+ + P+S PGVDVP + + GA P
Sbjct: 153 GSWEARALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFP 204
>pdb|2DE3|A Chain A, Crystal Structure Of Dszb C27s Mutant In Complex With 2'-
Hydroxybiphenyl-2-Sulfinic Acid
pdb|2DE3|B Chain B, Crystal Structure Of Dszb C27s Mutant In Complex With 2'-
Hydroxybiphenyl-2-Sulfinic Acid
pdb|2DE4|A Chain A, Crystal Structure Of Dszb C27s Mutant In Complex With
Biphenyl-2- Sulfinic Acid
pdb|2DE4|B Chain B, Crystal Structure Of Dszb C27s Mutant In Complex With
Biphenyl-2- Sulfinic Acid
Length = 365
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 31 GVAAARYLFHSIDLGDQLTNSNTDNPLSLPGVDVPQKTTSPAHREPGA 78
G AR L H+++ G+ + P+S PGVDVP + + GA
Sbjct: 153 GSWEARALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGA 200
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 12 HYQRSYLGGAVVNALDFGSGVAAARYLFH-SIDLG-----DQLTNSNTDNPLSLPG---V 62
H+ L G+ + A +GSG+AA+ + F S D D+L +S +D P L V
Sbjct: 348 HHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCV 407
Query: 63 DVPQKTTSPAHREPGAPRAPSQPP----STLPGSLKL 95
+ T RE + PP S PG+ L
Sbjct: 408 SPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYL 444
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 27.7 bits (60), Expect = 6.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 98 CSLCGEKVYLAQRFA-FNARLFHRTCFKCARC 128
C C + A+R N L+H CF CA+C
Sbjct: 14 CQRCQARFSPAERIVNSNGELYHEHCFVCAQC 45
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 116 RLFHRTCFKCARCQSQLTCINAYETHTGQFCCE 148
+++H CFKCA CQ + + Y CE
Sbjct: 30 KVYHLECFKCAACQKHFSVGDRYLLINSDIVCE 62
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding Lim
Protein 3
Length = 80
Score = 27.7 bits (60), Expect = 7.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLT 133
C+ C E++ Q + +H +CFKC C LT
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,789,716
Number of Sequences: 62578
Number of extensions: 357843
Number of successful extensions: 799
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 41
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)