Query psy11691
Match_columns 271
No_of_seqs 223 out of 1161
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 16:25:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cup_A Skeletal muscle LIM-pro 99.8 1.6E-19 5.3E-24 140.0 6.9 97 92-189 2-100 (101)
2 2xqn_T Testin, TESS; metal-bin 99.7 1.4E-18 4.8E-23 139.7 5.2 95 94-189 2-99 (126)
3 1rut_X Flinc4, fusion protein 99.7 1.2E-17 4.1E-22 143.7 2.6 101 91-192 1-106 (188)
4 2xjy_A Rhombotin-2; oncoprotei 99.7 2.2E-17 7.5E-22 133.3 3.8 93 95-188 2-99 (131)
5 1b8t_A Protein (CRP1); LIM dom 99.7 3.6E-17 1.2E-21 140.9 4.3 95 95-190 7-149 (192)
6 2jtn_A LIM domain-binding prot 99.7 1.1E-16 3.6E-21 136.9 6.9 93 94-188 59-152 (182)
7 1b8t_A Protein (CRP1); LIM dom 99.6 1.7E-16 5.8E-21 136.8 6.8 129 8-162 52-181 (192)
8 2rgt_A Fusion of LIM/homeobox 99.6 9.9E-17 3.4E-21 135.6 4.1 95 95-191 6-101 (169)
9 2co8_A NEDD9 interacting prote 99.6 4.9E-16 1.7E-20 117.3 6.4 63 95-157 15-78 (82)
10 1x68_A FHL5 protein; four-and- 99.6 4.7E-15 1.6E-19 109.8 6.9 68 92-160 2-72 (76)
11 1nyp_A Pinch protein; LIM doma 99.5 1.8E-15 6.1E-20 108.9 1.9 64 92-157 2-65 (66)
12 1x4l_A Skeletal muscle LIM-pro 99.5 4.3E-15 1.5E-19 108.6 3.8 66 92-158 2-70 (72)
13 2d8x_A Protein pinch; LIM doma 99.5 3.7E-15 1.3E-19 108.4 2.9 65 92-158 2-66 (70)
14 1x4k_A Skeletal muscle LIM-pro 99.5 4.8E-15 1.7E-19 108.0 3.4 67 92-159 2-69 (72)
15 1x64_A Alpha-actinin-2 associa 99.5 9.3E-15 3.2E-19 111.4 4.8 63 94-158 24-86 (89)
16 2cu8_A Cysteine-rich protein 2 99.5 6.1E-15 2.1E-19 109.0 3.7 64 94-158 8-72 (76)
17 1m3v_A FLIN4, fusion of the LI 99.5 6E-15 2E-19 118.9 3.7 77 91-168 1-81 (122)
18 2dj7_A Actin-binding LIM prote 99.5 1.3E-14 4.6E-19 109.2 5.1 62 95-158 15-76 (80)
19 2d8z_A Four and A half LIM dom 99.5 6E-15 2E-19 107.1 3.1 67 91-159 1-67 (70)
20 2cur_A Skeletal muscle LIM-pro 99.5 6.4E-15 2.2E-19 106.8 2.6 65 92-158 2-66 (69)
21 2dar_A PDZ and LIM domain prot 99.5 1.5E-14 5E-19 110.5 4.3 64 94-159 24-87 (90)
22 1x61_A Thyroid receptor intera 99.5 6.6E-15 2.2E-19 107.4 2.1 65 91-156 1-66 (72)
23 1wyh_A SLIM 2, skeletal muscle 99.5 8.8E-15 3E-19 106.6 2.5 66 93-159 3-69 (72)
24 1iml_A CRIP, cysteine rich int 99.5 2.2E-14 7.7E-19 105.9 4.4 66 96-162 1-67 (76)
25 1a7i_A QCRP2 (LIM1); LIM domai 99.5 1.3E-14 4.3E-19 108.5 2.0 64 95-159 7-70 (81)
26 1x62_A C-terminal LIM domain p 99.5 1.6E-14 5.5E-19 107.8 2.2 62 95-158 15-76 (79)
27 1wig_A KIAA1808 protein; LIM d 99.4 2.4E-14 8.3E-19 105.8 3.0 64 91-156 1-65 (73)
28 2l4z_A DNA endonuclease RBBP8, 99.4 4.3E-14 1.5E-18 115.0 4.3 63 92-155 58-122 (123)
29 1g47_A Pinch protein; LIM doma 99.4 2E-14 6.7E-19 106.0 2.0 64 94-158 10-74 (77)
30 2d8y_A Eplin protein; LIM doma 99.4 5.1E-14 1.7E-18 107.7 4.0 64 95-159 15-78 (91)
31 1x63_A Skeletal muscle LIM-pro 99.4 3.1E-14 1.1E-18 106.2 2.5 64 94-158 14-78 (82)
32 3f6q_B LIM and senescent cell 99.4 3.7E-14 1.3E-18 102.5 2.4 61 94-155 10-71 (72)
33 2ehe_A Four and A half LIM dom 99.4 1.2E-13 4.1E-18 103.2 5.0 65 94-159 14-79 (82)
34 1x3h_A Leupaxin; paxillin fami 99.4 7.7E-14 2.6E-18 103.7 2.3 64 94-159 14-77 (80)
35 2cor_A Pinch protein; LIM doma 99.4 7.2E-14 2.5E-18 104.7 2.1 63 94-159 14-76 (79)
36 2dlo_A Thyroid receptor-intera 99.4 1.1E-13 3.9E-18 103.3 2.7 65 94-159 14-78 (81)
37 2iyb_E Testin, TESS, TES; LIM 99.4 1.2E-13 4.1E-18 99.6 2.6 59 94-153 1-63 (65)
38 2egq_A FHL1 protein; LIM domai 99.4 1.1E-13 3.6E-18 102.2 2.4 58 94-152 14-75 (77)
39 2cuq_A Four and A half LIM dom 99.4 1.3E-13 4.6E-18 102.3 2.7 64 94-159 14-77 (80)
40 2l3k_A Rhombotin-2, linker, LI 99.4 2.9E-13 9.9E-18 109.1 4.6 64 96-160 9-74 (123)
41 1j2o_A FLIN2, fusion of rhombo 99.4 3.3E-13 1.1E-17 107.4 4.7 65 95-160 3-69 (114)
42 1v6g_A Actin binding LIM prote 99.3 5.7E-13 1.9E-17 99.5 3.3 60 94-154 14-73 (81)
43 1x6a_A LIMK-2, LIM domain kina 99.3 3.3E-13 1.1E-17 100.6 0.9 63 94-157 14-77 (81)
44 2xjy_A Rhombotin-2; oncoprotei 99.0 5.1E-11 1.7E-15 95.8 1.7 59 97-156 68-128 (131)
45 1rut_X Flinc4, fusion protein 99.0 2.5E-10 8.4E-15 98.0 4.7 60 97-157 71-132 (188)
46 2xqn_T Testin, TESS; metal-bin 98.9 2.5E-10 8.4E-15 91.4 3.0 60 94-154 62-124 (126)
47 2rgt_A Fusion of LIM/homeobox 98.9 1.3E-10 4.5E-15 98.0 1.1 63 94-156 64-128 (169)
48 2jtn_A LIM domain-binding prot 98.9 2.1E-10 7.1E-15 97.8 1.5 61 94-154 118-180 (182)
49 1zfo_A LAsp-1; LIM domain, zin 98.5 2.2E-08 7.4E-13 63.4 1.1 29 95-123 3-31 (31)
50 3tqk_A Phospho-2-dehydro-3-deo 98.1 2.6E-07 9E-12 87.2 -0.9 53 184-236 11-64 (346)
51 2cup_A Skeletal muscle LIM-pro 98.1 1.4E-06 4.7E-11 66.7 3.1 36 94-129 65-101 (101)
52 2ehe_A Four and A half LIM dom 98.0 9.5E-06 3.3E-10 59.9 5.2 48 142-189 1-49 (82)
53 1of8_A Phospho-2-dehydro-3-deo 97.9 1.3E-06 4.4E-11 83.3 -1.1 55 182-236 27-82 (370)
54 2egq_A FHL1 protein; LIM domai 97.9 1.9E-05 6.6E-10 57.5 5.4 48 143-190 2-53 (77)
55 1x6a_A LIMK-2, LIM domain kina 97.8 1.5E-05 5.1E-10 58.8 4.5 46 143-189 2-47 (81)
56 2cuq_A Four and A half LIM dom 97.8 2.7E-05 9.4E-10 57.1 5.3 46 142-188 1-46 (80)
57 1x63_A Skeletal muscle LIM-pro 97.8 2.5E-05 8.6E-10 57.5 5.0 47 143-189 2-49 (82)
58 2dlo_A Thyroid receptor-intera 97.7 3.2E-05 1.1E-09 57.0 5.0 47 142-190 2-48 (81)
59 1x3h_A Leupaxin; paxillin fami 97.7 4.1E-05 1.4E-09 56.1 5.4 48 142-190 1-48 (80)
60 1n8f_A DAHP synthetase; (beta/ 97.7 3.5E-06 1.2E-10 79.8 -1.2 53 184-236 14-67 (350)
61 1v6g_A Actin binding LIM prote 97.7 2.9E-05 1E-09 57.3 4.0 46 143-189 2-47 (81)
62 1m3v_A FLIN4, fusion of the LI 95.2 0.011 3.8E-07 46.7 3.0 57 97-154 34-113 (122)
63 3fs2_A 2-dehydro-3-deoxyphosph 95.1 0.0084 2.9E-07 55.6 2.3 26 211-236 30-55 (298)
64 3tml_A 2-dehydro-3-deoxyphosph 94.5 0.015 5E-07 53.7 2.3 25 212-236 7-31 (288)
65 3sz8_A 2-dehydro-3-deoxyphosph 94.3 0.011 3.8E-07 54.4 1.1 23 214-236 12-34 (285)
66 2dar_A PDZ and LIM domain prot 93.3 0.088 3E-06 39.1 4.3 21 170-190 38-58 (90)
67 1nyp_A Pinch protein; LIM doma 93.2 0.056 1.9E-06 37.7 2.9 22 170-191 18-39 (66)
68 2cu8_A Cysteine-rich protein 2 93.0 0.093 3.2E-06 37.6 4.0 21 169-189 22-42 (76)
69 1wig_A KIAA1808 protein; LIM d 92.7 0.17 5.9E-06 36.3 5.0 21 170-190 18-38 (73)
70 1wyh_A SLIM 2, skeletal muscle 92.3 0.12 4.1E-06 36.4 3.7 20 170-189 20-39 (72)
71 1x4k_A Skeletal muscle LIM-pro 92.3 0.14 4.9E-06 36.0 4.0 21 170-190 20-40 (72)
72 2d8z_A Four and A half LIM dom 92.3 0.15 5.1E-06 35.8 4.1 20 170-189 18-37 (70)
73 2l3k_A Rhombotin-2, linker, LI 91.9 0.15 5.3E-06 40.1 4.2 22 171-192 24-45 (123)
74 2d8x_A Protein pinch; LIM doma 91.9 0.17 5.9E-06 35.5 4.1 21 170-190 18-38 (70)
75 2cor_A Pinch protein; LIM doma 91.5 0.21 7.3E-06 36.3 4.4 33 143-188 14-46 (79)
76 1x68_A FHL5 protein; four-and- 91.5 0.16 5.6E-06 36.4 3.7 19 170-188 22-40 (76)
77 2qkf_A 3-deoxy-D-manno-octulos 91.5 0.058 2E-06 49.2 1.4 24 214-237 7-30 (280)
78 2co8_A NEDD9 interacting prote 91.4 0.18 6.3E-06 36.9 3.9 20 170-189 29-48 (82)
79 2dj7_A Actin-binding LIM prote 91.1 0.23 8E-06 36.3 4.2 36 143-190 14-49 (80)
80 3f6q_B LIM and senescent cell 90.9 0.22 7.6E-06 34.6 3.8 17 172-188 28-44 (72)
81 1x61_A Thyroid receptor intera 90.8 0.33 1.1E-05 34.1 4.7 20 170-189 20-39 (72)
82 2d8y_A Eplin protein; LIM doma 90.8 0.27 9.4E-06 36.4 4.4 21 170-190 29-49 (91)
83 1x62_A C-terminal LIM domain p 90.8 0.2 6.7E-06 36.3 3.5 39 143-206 14-52 (79)
84 1iml_A CRIP, cysteine rich int 90.7 0.13 4.5E-06 36.8 2.5 21 170-190 14-34 (76)
85 1x4l_A Skeletal muscle LIM-pro 90.5 0.37 1.3E-05 33.9 4.7 20 170-189 22-41 (72)
86 1x64_A Alpha-actinin-2 associa 90.2 0.31 1.1E-05 36.0 4.3 19 171-189 39-57 (89)
87 2cur_A Skeletal muscle LIM-pro 90.2 0.26 8.9E-06 34.5 3.6 19 170-188 18-36 (69)
88 1o60_A 2-dehydro-3-deoxyphosph 89.8 0.1 3.4E-06 48.0 1.4 25 213-237 9-33 (292)
89 1a7i_A QCRP2 (LIM1); LIM domai 89.6 0.22 7.5E-06 36.0 2.9 20 170-189 21-40 (81)
90 1g47_A Pinch protein; LIM doma 89.4 0.36 1.2E-05 34.3 3.9 17 171-187 27-43 (77)
91 2iyb_E Testin, TESS, TES; LIM 89.1 0.25 8.6E-06 34.4 2.8 21 170-190 17-39 (65)
92 2l4z_A DNA endonuclease RBBP8, 87.5 0.43 1.5E-05 37.9 3.6 19 171-189 76-94 (123)
93 1j2o_A FLIN2, fusion of rhombo 84.2 0.6 2.1E-05 36.1 2.8 24 171-194 18-41 (114)
94 1vs1_A 3-deoxy-7-phosphoheptul 73.8 1.4 4.6E-05 40.1 2.0 23 214-237 31-53 (276)
95 1zco_A 2-dehydro-3-deoxyphosph 71.0 1.8 6E-05 38.9 2.1 23 213-237 16-38 (262)
96 2ect_A Ring finger protein 126 68.5 12 0.00042 26.1 5.8 30 95-124 15-46 (78)
97 2ct0_A Non-SMC element 1 homol 63.1 2.7 9.2E-05 30.9 1.4 29 95-123 15-43 (74)
98 3nw0_A Non-structural maintena 61.3 3 0.0001 36.9 1.6 38 95-132 180-227 (238)
99 1vr6_A Phospho-2-dehydro-3-deo 61.2 3.1 0.0001 39.1 1.7 23 214-237 99-121 (350)
100 2ecm_A Ring finger and CHY zin 61.0 6.7 0.00023 25.4 3.0 40 94-133 4-54 (55)
101 1x4j_A Ring finger protein 38; 59.5 8.6 0.0003 26.8 3.5 40 95-134 23-72 (75)
102 2ea6_A Ring finger protein 4; 57.8 7.6 0.00026 26.2 2.9 39 95-133 15-67 (69)
103 2ep4_A Ring finger protein 24; 57.7 17 0.00057 25.1 4.8 39 95-133 15-63 (74)
104 2kiz_A E3 ubiquitin-protein li 52.6 18 0.00061 24.6 4.2 40 95-134 14-63 (69)
105 1chc_A Equine herpes virus-1 r 47.8 11 0.00037 25.6 2.4 40 95-134 5-52 (68)
106 2d8t_A Dactylidin, ring finger 47.2 23 0.0008 24.3 4.1 38 95-133 15-60 (71)
107 3nvt_A 3-deoxy-D-arabino-heptu 46.7 8.1 0.00028 36.6 2.0 22 214-236 135-156 (385)
108 2xeu_A Ring finger protein 4; 43.9 12 0.00042 24.7 2.1 43 95-137 3-59 (64)
109 4ap4_A E3 ubiquitin ligase RNF 41.5 23 0.00077 26.7 3.5 60 95-154 7-82 (133)
110 1iym_A EL5; ring-H2 finger, ub 40.6 21 0.0007 23.0 2.8 30 95-124 5-37 (55)
111 2l0b_A E3 ubiquitin-protein li 40.2 19 0.00064 26.3 2.8 31 94-124 39-71 (91)
112 3ng2_A RNF4, snurf, ring finge 38.2 11 0.00039 25.5 1.2 42 95-136 10-65 (71)
113 2ecl_A Ring-box protein 2; RNF 37.0 16 0.00053 26.3 1.9 40 95-134 15-76 (81)
114 2gvi_A Conserved hypothetical 31.9 21 0.00073 30.6 2.2 29 95-123 172-200 (204)
115 2djb_A Polycomb group ring fin 31.4 37 0.0013 23.3 3.0 40 95-134 15-62 (72)
116 1wfp_A Zinc finger (AN1-like) 30.2 68 0.0023 23.7 4.4 41 95-152 25-65 (74)
117 2cs3_A Protein C14ORF4, MY039 29.9 27 0.00091 26.7 2.1 49 95-149 15-63 (93)
118 2ysm_A Myeloid/lymphoid or mix 29.1 1.4E+02 0.0049 22.4 6.3 30 95-124 7-38 (111)
119 2ysl_A Tripartite motif-contai 27.2 98 0.0034 20.8 4.7 28 95-123 20-47 (73)
120 2yur_A Retinoblastoma-binding 26.9 86 0.0029 21.5 4.4 28 95-123 15-43 (74)
121 2ecn_A Ring finger protein 141 26.1 29 0.001 23.5 1.7 28 95-124 15-42 (70)
122 2csy_A Zinc finger protein 183 25.4 75 0.0026 22.1 3.9 38 95-133 15-60 (81)
123 2ecw_A Tripartite motif-contai 25.3 1E+02 0.0036 21.0 4.6 28 95-123 19-46 (85)
124 1wen_A Inhibitor of growth fam 23.7 1.7E+02 0.0057 20.8 5.5 44 96-153 17-65 (71)
125 3v43_A Histone acetyltransfera 23.3 1.9E+02 0.0065 21.9 6.1 9 115-123 33-41 (112)
126 2ecy_A TNF receptor-associated 22.6 53 0.0018 22.0 2.5 28 95-123 15-42 (66)
127 3j21_V 50S ribosomal protein L 22.1 45 0.0015 24.1 2.0 26 94-119 3-31 (66)
128 2ecv_A Tripartite motif-contai 22.0 1.3E+02 0.0043 20.5 4.5 28 95-123 19-46 (85)
129 2y43_A E3 ubiquitin-protein li 21.9 29 0.001 25.3 1.1 38 96-134 23-69 (99)
130 2ctu_A Zinc finger protein 483 21.5 22 0.00076 23.2 0.3 34 96-135 19-52 (73)
131 2d8s_A Cellular modulator of i 21.3 1.6E+02 0.0056 21.1 5.1 29 95-123 15-49 (80)
132 2ct2_A Tripartite motif protei 20.9 1.4E+02 0.0046 20.7 4.5 29 95-123 15-46 (88)
133 2lri_C Autoimmune regulator; Z 20.3 82 0.0028 22.2 3.1 45 96-153 13-59 (66)
No 1
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.6e-19 Score=139.95 Aligned_cols=97 Identities=19% Similarity=0.385 Sum_probs=85.3
Q ss_pred CcCCCcccccCceeec-ceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccCCCCCCCCCCC-
Q psy11691 92 SLKLNSCSLCGEKVYL-AQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLTDPLRSSDRPD- 169 (271)
Q Consensus 92 ~~~s~kCa~Cgk~V~~-~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~~rc~~~~~~~- 169 (271)
+.++++|++|++.|+. ++.+.++++.||.+||+|..|+++|.+..|+.. ++.+||+.||.+.+.+....|...+.++
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAK-DNKILCNKCTTREDSPKCKGCFKAIVAGD 80 (101)
T ss_dssp CSCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEE-TTEEECHHHHTTCCCCBCSSSCCBCCSSS
T ss_pred CCCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECc-CCEEEChhHhhhhcCCccccCCCccccCC
Confidence 3457899999999975 778999999999999999999999998889886 7999999999999998888888877765
Q ss_pred CceeecCccccCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~ 189 (271)
..|.+.|..||++||.|..+
T Consensus 81 ~~~~a~~~~~H~~CF~C~~C 100 (101)
T 2cup_A 81 QNVEYKGTVWHKDCFSGPSS 100 (101)
T ss_dssp CEEESSSCEEETTTCCCTTC
T ss_pred eEEEeCCcchHHhCCCCCCC
Confidence 45778999999999997654
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=139.71 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=84.4
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccCCCCCCCCCCC-Cce
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLTDPLRSSDRPD-GHH 172 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~~rc~~~~~~~-~~I 172 (271)
++++|++|++.|+.++.+.++|+.||++||+|..|+++|.+..|+.. ||.+||+.||.+.+++....|+..+..+ ..+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMV-NDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEE-TTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeE-CCEEechHHhCcCcCccCcccCCcCCcCceEE
Confidence 46899999999988888999999999999999999999999889886 7999999999999999888888877764 457
Q ss_pred eecCcccc--CCCCCCCCC
Q psy11691 173 AIGDDRYH--AELNSDKST 189 (271)
Q Consensus 173 ~~gg~~YH--~ecFs~ks~ 189 (271)
.+.+..|| ++||.|..+
T Consensus 81 ~a~~~~~H~~~~CF~C~~C 99 (126)
T 2xqn_T 81 TYNNFSWHASTECFLCSCC 99 (126)
T ss_dssp EETTEEEESSTTTSBCTTT
T ss_pred ECCCCEeeCCCCCcCcCCC
Confidence 78999999 999995443
No 3
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.67 E-value=1.2e-17 Score=143.73 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=82.7
Q ss_pred CCcCCCcccccCceeecceeEEeeCceeccccccccccCCccCC--cCeeecCCCeeeccCCCCCcccc--cCCCCCCCC
Q psy11691 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTC--INAYETHTGQFCCEVCPDEEERS--LTDPLRSSD 166 (271)
Q Consensus 91 g~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s--~~f~~~~dG~~yCk~CY~~~~~~--I~~rc~~~~ 166 (271)
|+..++.|++|++.|+..+.+.++++.||++||+|..|+++|.. ..|+.. ++.+||+.||.+.+.+ ....|...+
T Consensus 1 g~l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~-~g~~yC~~cy~~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRLFGNSGACSACGQSI 79 (188)
T ss_dssp ---CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEE-TTEEECHHHHHHHHSCCEECTTTCCEE
T ss_pred CCCCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEe-CCccccccccccccccCCccccCCCcc
Confidence 34567899999999986667899999999999999999999986 578885 7999999999988887 677777766
Q ss_pred CCCCc-eeecCccccCCCCCCCCCCcc
Q psy11691 167 RPDGH-HAIGDDRYHAELNSDKSTNLL 192 (271)
Q Consensus 167 ~~~~~-I~~gg~~YH~ecFs~ks~~ll 192 (271)
...+. +.+.+..||++||.|..++-.
T Consensus 80 ~~~e~~i~a~~~~~H~~CF~C~~C~~~ 106 (188)
T 1rut_X 80 PASELVMRAQGNVYHLKCFTCSTCRNR 106 (188)
T ss_dssp CTTSEEEEETTEEECGGGCBCTTTCCB
T ss_pred ccCcEEEEcCCCEEeCCCCeECCCCCC
Confidence 65443 568899999999998766433
No 4
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.66 E-value=2.2e-17 Score=133.32 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=78.4
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCC--cCeeecCCCeeeccCCCCCcccc--cCCCCCCCCCCCC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTC--INAYETHTGQFCCEVCPDEEERS--LTDPLRSSDRPDG 170 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s--~~f~~~~dG~~yCk~CY~~~~~~--I~~rc~~~~~~~~ 170 (271)
.+.|++|+++|+..+.+.++++.||++||+|..|+++|.. ..|+.. ||.+||+.||.+.+++ ....|...+...+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEE-TTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEE-CCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 3689999999986667899999999999999999999974 578885 7999999999998887 7777777666544
Q ss_pred -ceeecCccccCCCCCCCC
Q psy11691 171 -HHAIGDDRYHAELNSDKS 188 (271)
Q Consensus 171 -~I~~gg~~YH~ecFs~ks 188 (271)
.+.+.+..||++||.|..
T Consensus 81 ~~~~a~~~~~H~~CF~C~~ 99 (131)
T 2xjy_A 81 MTMRVKDKVYHLECFKCAA 99 (131)
T ss_dssp EEEEETTEEEEGGGCBCTT
T ss_pred eeEeeCCceECccCcccCC
Confidence 456899999999999443
No 5
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.65 E-value=3.6e-17 Score=140.94 Aligned_cols=95 Identities=16% Similarity=0.347 Sum_probs=79.2
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc----------------
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL---------------- 158 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I---------------- 158 (271)
+++|.+|++.|+.++.+.++++.||++||+|..|+++|....|+.. |+.+||+.||.+.+++.
T Consensus 7 ~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~ 85 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVH-GDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKG 85 (192)
T ss_dssp CEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEE-TTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCC
T ss_pred CCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEec-CCEeeChhhhHhhcCccccccccccccEecCCC
Confidence 5889999999998999999999999999999999999999999886 79999999998877654
Q ss_pred --------------------------------CCCCCCCCCCCCceeecCccccCCCCCCCCCC
Q psy11691 159 --------------------------------TDPLRSSDRPDGHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 159 --------------------------------~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks~~ 190 (271)
...|...+..++.|++.|..||.+||.|..+.
T Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~ 149 (192)
T 1b8t_A 86 ESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCG 149 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTC
T ss_pred cccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccC
Confidence 22344444445677889999999999955433
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.65 E-value=1.1e-16 Score=136.94 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=79.9
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccCCCCCCCCCCCCc-e
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLTDPLRSSDRPDGH-H 172 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~~rc~~~~~~~~~-I 172 (271)
..++|++|++.|+..+.+.++++.||++||+|..|+++|....| .. +|.+||+.||.+.+.+....|...+..++. +
T Consensus 59 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~-~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~ 136 (182)
T 2jtn_A 59 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SR-GESVYCKDDFFKRFGTKCAACQLGIPPTQVVR 136 (182)
T ss_dssp SCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EE-TTEEECHHHHHHTTSCCCTTTCCCCCSSCCCC
T ss_pred CCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eE-CCEeeecCccccccccccccCCCccCCCceEE
Confidence 46899999999987767889999999999999999999998776 44 799999999999999888888877766544 4
Q ss_pred eecCccccCCCCCCCC
Q psy11691 173 AIGDDRYHAELNSDKS 188 (271)
Q Consensus 173 ~~gg~~YH~ecFs~ks 188 (271)
.+.+..||++||.|..
T Consensus 137 ~a~~~~~H~~CF~C~~ 152 (182)
T 2jtn_A 137 RAQDFVYHLHCFACVV 152 (182)
T ss_dssp EETTEECCTTTCCCTT
T ss_pred ecCCCCEEeCCCcCCC
Confidence 5789999999999543
No 7
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.64 E-value=1.7e-16 Score=136.77 Aligned_cols=129 Identities=21% Similarity=0.425 Sum_probs=97.7
Q ss_pred CCcchhhhhccCCcc-ccccccCCccccccccccCCCccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11691 8 RHHKHYQRSYLGGAV-VNALDFGSGVAAARYLFHSIDLGDQLTNSNTDNPLSLPGVDVPQKTTSPAHREPGAPRAPSQPP 86 (271)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~~g~g~~~g~~~~~~~s~d~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ps~~~ 86 (271)
+.-+.||+.+|...+ ++++|+|.++|. +.+|.+.+|..+++... . ..+ .....+...
T Consensus 52 ~~g~~yC~~cy~~~f~~~c~~c~~~~g~-----~~~~~~~~~~~~~~~~~----~-------~~p------~~~~~~~~~ 109 (192)
T 1b8t_A 52 HGDEIYCKSCYGKKYGPKGKGKGMGAGT-----LSTDKGESLGIKYEEGQ----S-------HRP------TNPNASRMA 109 (192)
T ss_dssp ETTEEEEHHHHHHHHSCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCC----C-------CCC------CCCCCCCCC
T ss_pred cCCEeeChhhhHhhcCcccccccccccc-----EecCCCccccccccccc----c-------cCC------CCcCccccc
Confidence 345789999999999 999999999998 89999888755442110 0 000 001111112
Q ss_pred CCCCCCcCCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccCCCC
Q psy11691 87 STLPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLTDPL 162 (271)
Q Consensus 87 ~~~~g~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~~rc 162 (271)
..+. .+++|++|++.|+.++.|.++++.||.+||+|..|+++|..+.|+.. ++.+||+.||.+.+++....|
T Consensus 110 ~~~~---~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~f~~kc~~C 181 (192)
T 1b8t_A 110 QKVG---GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADK-DGEIYCKGCYAKNFGPKGFGF 181 (192)
T ss_dssp CCCC---CCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEE-TTEEEEHHHHHHHTCCCCCCC
T ss_pred cccC---CCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCccccc-CCEEeCHHHHHHhcCCcCCCC
Confidence 1222 25889999999998899999999999999999999999999899885 799999999998887765433
No 8
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.63 E-value=9.9e-17 Score=135.65 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=80.5
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccCCCCCCCCCCCCce-e
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLTDPLRSSDRPDGHH-A 173 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~~rc~~~~~~~~~I-~ 173 (271)
.++|++|++.|+..+.+.++|+.||++||+|..|+++|....| .. ||.+||+.||.+.+++....|...+..++.+ .
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~-~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~ 83 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SR-GESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 83 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ES-SSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEE
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-cc-CCeeeecccccccccccccccccccCCCcEEEE
Confidence 5889999999987667889999999999999999999998775 54 7999999999999988888787777665544 5
Q ss_pred ecCccccCCCCCCCCCCc
Q psy11691 174 IGDDRYHAELNSDKSTNL 191 (271)
Q Consensus 174 ~gg~~YH~ecFs~ks~~l 191 (271)
+.+..||.+||.|..++.
T Consensus 84 a~~~~~H~~CF~C~~C~~ 101 (169)
T 2rgt_A 84 AQDFVYHLHCFACVVCKR 101 (169)
T ss_dssp ETTEEEEGGGCBCTTTCC
T ss_pred cCCceEeeCCCcCCCCCC
Confidence 789999999999765443
No 9
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.9e-16 Score=117.33 Aligned_cols=63 Identities=30% Similarity=0.720 Sum_probs=57.1
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeec-CCCeeeccCCCCCcccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYET-HTGQFCCEVCPDEEERS 157 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~-~dG~~yCk~CY~~~~~~ 157 (271)
+++|.+|++.|+.+|++.++++.||++||+|..|+++|..+.|+.. +|+.+||+.||.+.+..
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 5899999999999999999999999999999999999999998842 48999999999977653
No 10
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=4.7e-15 Score=109.79 Aligned_cols=68 Identities=19% Similarity=0.513 Sum_probs=60.5
Q ss_pred CcCCCcccccCceeec---ceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccCC
Q psy11691 92 SLKLNSCSLCGEKVYL---AQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLTD 160 (271)
Q Consensus 92 ~~~s~kCa~Cgk~V~~---~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~~ 160 (271)
..++++|++|+++|+. ++.+.++++.||++||+|..|+++|....|+.. ++.+||+.||.+.+.++..
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~f~~~C~ 72 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQ-NKEIFCQKCGSGMDTDISG 72 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEE-TTEEEETTTTCCCCCCSSS
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeE-CCEEECHHHhhhhhCCcCC
Confidence 4578999999999973 478999999999999999999999998889885 7999999999988887654
No 11
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.52 E-value=1.8e-15 Score=108.89 Aligned_cols=64 Identities=20% Similarity=0.415 Sum_probs=57.4
Q ss_pred CcCCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccc
Q psy11691 92 SLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERS 157 (271)
Q Consensus 92 ~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~ 157 (271)
..++++|++|++.|+ ++.+.++++.||++||+|..|+++|.+..|+.. ++.+||+.||.+.+++
T Consensus 2 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 2 SMGVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYER-KGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEE-TTEEECHHHHHHHCSC
T ss_pred CcCCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeE-CCcEECHHHHHHHhCC
Confidence 346789999999997 888999999999999999999999999899886 7999999999876654
No 12
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=4.3e-15 Score=108.61 Aligned_cols=66 Identities=20% Similarity=0.475 Sum_probs=57.9
Q ss_pred CcCCCcccccCceeec---ceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc
Q psy11691 92 SLKLNSCSLCGEKVYL---AQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL 158 (271)
Q Consensus 92 ~~~s~kCa~Cgk~V~~---~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I 158 (271)
+.++++|++|++.|+. .+.+.++++.||++||+|..|+++|....|+.. ++.+||+.||.+.+++.
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~~p~ 70 (72)
T 1x4l_A 2 SSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTE-RDDILCPDCGKDISGPS 70 (72)
T ss_dssp CSCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEEC-SSSEECHHHHHTCCCSS
T ss_pred CCCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeE-CCEEEChhHcCcccCCC
Confidence 4467899999999975 356889999999999999999999998888875 79999999999877664
No 13
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=3.7e-15 Score=108.38 Aligned_cols=65 Identities=28% Similarity=0.568 Sum_probs=58.0
Q ss_pred CcCCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc
Q psy11691 92 SLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL 158 (271)
Q Consensus 92 ~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I 158 (271)
+..+++|++|++.|+ ++.+.++++.||++||+|..|+++|....|+.. ++.+||+.||.+.+.+.
T Consensus 2 s~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 2 SSGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKN-AGRHLCRPCHNREKASG 66 (70)
T ss_dssp CCCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEE-TTEEECHHHHHHHHCCC
T ss_pred CCCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeE-CCeEECHHHhhhhcCCC
Confidence 456789999999996 678999999999999999999999999988875 79999999999776654
No 14
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=4.8e-15 Score=107.97 Aligned_cols=67 Identities=22% Similarity=0.509 Sum_probs=59.6
Q ss_pred CcCCCcccccCceeecce-eEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 92 SLKLNSCSLCGEKVYLAQ-RFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 92 ~~~s~kCa~Cgk~V~~~E-rI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
..++++|++|++.|+..+ .+.++++.||.+||+|..|+++|..+.|+.. ++.+||+.||.+.+++..
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~f~~~C 69 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPK-DNQNFCVPCYEKQHASGP 69 (72)
T ss_dssp CSCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEE-TTEEEEHHHHHHHTSSCC
T ss_pred CccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCcc-CCeEECHHHHhHHhCCCC
Confidence 456799999999998765 6889999999999999999999999999886 799999999998777653
No 15
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=9.3e-15 Score=111.41 Aligned_cols=63 Identities=21% Similarity=0.497 Sum_probs=56.7
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL 158 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I 158 (271)
...+|.+|++.|+ ++.+.++++.||.+||+|..|++.|..+.|+.. ++.+||+.||.+.|++.
T Consensus 24 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~y~~~f~p~ 86 (89)
T 1x64_A 24 RMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFV-EGELYCETHARARTSGP 86 (89)
T ss_dssp SCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEE-TTEEECHHHHHHHSSSC
T ss_pred cCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeE-CCEEECHHHHHHHhCCC
Confidence 4689999999997 477999999999999999999999999889886 79999999999877654
No 16
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=6.1e-15 Score=109.01 Aligned_cols=64 Identities=28% Similarity=0.531 Sum_probs=58.5
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeecc-CCCCCccccc
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCE-VCPDEEERSL 158 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk-~CY~~~~~~I 158 (271)
++++|++|++.|+.++.+.++++.||++||+|..|+++|....|+.. ++.+||+ .||.+.+.+.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEH-DGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEE-TTEEECTTTHHHHHSCSS
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeE-CCEEecchHHHHHhcccc
Confidence 46899999999998999999999999999999999999999889886 7999999 7999877654
No 17
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=6e-15 Score=118.88 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=65.7
Q ss_pred CCcCCCcccccCceeecceeEEeeCceeccccccccccCCccC--CcCeeecCCCeeeccCCCCCcccc--cCCCCCCCC
Q psy11691 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLT--CINAYETHTGQFCCEVCPDEEERS--LTDPLRSSD 166 (271)
Q Consensus 91 g~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~--s~~f~~~~dG~~yCk~CY~~~~~~--I~~rc~~~~ 166 (271)
|+..+++|++|++.|+..+.+.++++.||++||+|..|+++|. +..|+.. ++.+||+.||.+.+++ ....|...+
T Consensus 1 gs~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRLFGNSGAGGSGGHMG 79 (122)
T ss_dssp CCSCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEE-TTEEECHHHHHHHHCCCCSSSCSSCCS
T ss_pred CCCCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEE-CCeeecHHHHHHHcCCCCccccCCCCc
Confidence 4566799999999998777799999999999999999999997 3578885 7999999999999887 666666655
Q ss_pred CC
Q psy11691 167 RP 168 (271)
Q Consensus 167 ~~ 168 (271)
..
T Consensus 80 ~~ 81 (122)
T 1m3v_A 80 SG 81 (122)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 18
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.3e-14 Score=109.23 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=56.2
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL 158 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I 158 (271)
.++|.+|++.|+.++.+.++++.||++||+|..|+++|.. .|+.. |+.+||+.||.+.|.+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~-~g~~yC~~~y~~~fg~~ 76 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISK-DGVPYCESDYHAQFGSG 76 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEE-TTEEECTTHHHHHTTCC
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEE-CCEEECHHHHHHHcCCC
Confidence 5789999999998999999999999999999999999985 78875 79999999999877654
No 19
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=6e-15 Score=107.11 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=59.2
Q ss_pred CCcCCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 91 g~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
|+.++++|.+|++.|. ++.+.++++.||++||+|..|+++|....|+.. ++.+||+.||.+.+++..
T Consensus 1 g~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 1 GSSGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTAR-DDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp CCCCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEES-SSSEECHHHHHHHTCCCC
T ss_pred CCCCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEee-CCeEECHHHHHHHhcccc
Confidence 4557899999999996 677999999999999999999999999889885 799999999998777653
No 20
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=6.4e-15 Score=106.84 Aligned_cols=65 Identities=18% Similarity=0.458 Sum_probs=57.9
Q ss_pred CcCCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc
Q psy11691 92 SLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL 158 (271)
Q Consensus 92 ~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I 158 (271)
+.++++|++|++.|+ ++.|.++++.||++||+|..|+++|.+..|+.. ++.+||+.||.+.+++.
T Consensus 2 s~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~f~~~ 66 (69)
T 2cur_A 2 SSGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAV-EDQYYCVDCYKNFVSGP 66 (69)
T ss_dssp CCCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEEC-SSCEEEHHHHHHHHTCS
T ss_pred CCCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeE-CCEEECHHHhHHHhcCC
Confidence 456799999999996 678999999999999999999999998889885 79999999999776654
No 21
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.5e-14 Score=110.53 Aligned_cols=64 Identities=22% Similarity=0.488 Sum_probs=57.9
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
+.++|++|++.| .++.|.++++.||++||+|..|+++|....|+.. ++.+||+.||.+.|++..
T Consensus 24 ~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~f~~~c 87 (90)
T 2dar_A 24 RTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEE-KGALYCELCYEKFFASGP 87 (90)
T ss_dssp CCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEES-SSCEECHHHHHHHTSCCC
T ss_pred CCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeE-CCEEECHHHHHHHcCCCC
Confidence 468999999999 4788999999999999999999999999899885 799999999998877654
No 22
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=6.6e-15 Score=107.44 Aligned_cols=65 Identities=31% Similarity=0.545 Sum_probs=56.9
Q ss_pred CCcCCCcccccCceeecce-eEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccc
Q psy11691 91 GSLKLNSCSLCGEKVYLAQ-RFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEER 156 (271)
Q Consensus 91 g~~~s~kCa~Cgk~V~~~E-rI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~ 156 (271)
|+.++++|++|++.|+..+ .+.++++.||.+||+|..|+++|....|+.. ++.+||+.||.+.++
T Consensus 1 g~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 1 GSSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAV-ERRAYCEGCYVATLE 66 (72)
T ss_dssp CCSCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEES-SSCEEEHHHHHHHHH
T ss_pred CCCCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEee-CCeEECHHHHHHHHc
Confidence 3456799999999998754 7899999999999999999999988889886 799999999986654
No 23
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=8.8e-15 Score=106.57 Aligned_cols=66 Identities=24% Similarity=0.571 Sum_probs=58.7
Q ss_pred cCCCcccccCceeecc-eeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 93 LKLNSCSLCGEKVYLA-QRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 93 ~~s~kCa~Cgk~V~~~-ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
.++++|.+|++.|+.+ +.+.++++.||.+||+|..|+++|..+.|+.. ++.+||+.||.+.+++..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~f~~~C 69 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPD-KGAHYCVPCYENKFASGP 69 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEE-TTEEEEHHHHHHHTSCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCc-CCeEECHHHHHHHccCcC
Confidence 3578999999999875 67889999999999999999999999999886 799999999998777653
No 24
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.2e-14 Score=105.95 Aligned_cols=66 Identities=27% Similarity=0.521 Sum_probs=59.4
Q ss_pred CcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeecc-CCCCCcccccCCCC
Q psy11691 96 NSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCE-VCPDEEERSLTDPL 162 (271)
Q Consensus 96 ~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk-~CY~~~~~~I~~rc 162 (271)
++|++|++.|+.++.+.++++.||.+||+|..|+++|..+.|+.. ++.+||+ .||.+.+++....|
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~cy~~~f~~~C~~C 67 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEH-EGKPYCNHPCYSAMFGPKGFGR 67 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEE-TTEEEETTTHHHHHSSCCCSSC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECc-CCeEeeCHHHHHHHhCccCCCc
Confidence 579999999988999999999999999999999999999999886 7999999 79998888765433
No 25
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.46 E-value=1.3e-14 Score=108.51 Aligned_cols=64 Identities=28% Similarity=0.625 Sum_probs=56.8
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
+++|.+|++.|+.++.+.++++.||++||+|..|+++|....|+.. ++.+||+.||.+.+.+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~f~~~c 70 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIH-DAEVYCKSCYGKKYGPKG 70 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEE-TTEEECSHHHHHHCC---
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEee-CCEEECHHHHHHHhCCcc
Confidence 5899999999998999999999999999999999999999989886 799999999998777654
No 26
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=1.6e-14 Score=107.81 Aligned_cols=62 Identities=23% Similarity=0.472 Sum_probs=55.8
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL 158 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I 158 (271)
.++|++|++.|+ ++.+.++++.||.+||+|..|++.|....|+.. ++.+||+.||.+.+++.
T Consensus 15 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~p~ 76 (79)
T 1x62_A 15 LPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFV-EDQIYCEKHARERVSGP 76 (79)
T ss_dssp CCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEES-SSCEECHHHHHHHHSSC
T ss_pred CCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeE-CCEEECHHHHHHHhCCC
Confidence 588999999997 578999999999999999999999998889886 79999999999777653
No 27
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=2.4e-14 Score=105.78 Aligned_cols=64 Identities=17% Similarity=0.439 Sum_probs=55.4
Q ss_pred CCcCCCcccccCceeecceeEEeeCceeccccccccccCCccC-CcCeeecCCCeeeccCCCCCccc
Q psy11691 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLT-CINAYETHTGQFCCEVCPDEEER 156 (271)
Q Consensus 91 g~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~-s~~f~~~~dG~~yCk~CY~~~~~ 156 (271)
|+.++++|++|+++|+ ++.|.++++.||++||+|..|+++|. ...|+.. ++.+||+.||...+.
T Consensus 1 ~s~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~-~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 1 GSSGSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQ-GSSIWHPACRQAART 65 (73)
T ss_dssp CCCSCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEE-TTEEECTTHHHHTSS
T ss_pred CCcCcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEee-CCEEEChHHChHhhc
Confidence 4567899999999996 57889999999999999999999998 5567775 799999999986544
No 28
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.44 E-value=4.3e-14 Score=114.95 Aligned_cols=63 Identities=25% Similarity=0.454 Sum_probs=55.1
Q ss_pred CcCCCcccccCceeecceeEEeeCceeccccccccccCCccC--CcCeeecCCCeeeccCCCCCcc
Q psy11691 92 SLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLT--CINAYETHTGQFCCEVCPDEEE 155 (271)
Q Consensus 92 ~~~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~--s~~f~~~~dG~~yCk~CY~~~~ 155 (271)
..++++|++|++.|+..+.+.++++.||++||+|..|+++|. ...|+.. +|.+||+.||.+.|
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~-dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRLF 122 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCS-SSCCBCHHHHHHHC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEE-CCEEeCHHHhhhhc
Confidence 345799999999998777799999999999999999999997 3578885 79999999998655
No 29
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=2e-14 Score=105.98 Aligned_cols=64 Identities=27% Similarity=0.416 Sum_probs=56.9
Q ss_pred CCCcccccCceeeccee-EEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc
Q psy11691 94 KLNSCSLCGEKVYLAQR-FAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL 158 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~Er-I~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I 158 (271)
.+++|++|++.|+..++ +.++|+.||.+||+|..|+++|..+.|+.. +|.+||+.||.+.+++.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~y~~~f~~~ 74 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEF-EGRKYCEHDFQMLFAPC 74 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEE-TTEEECHHHHHHHCCCC
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeE-CCeEeCHHHHHHHhhcc
Confidence 35899999999987665 679999999999999999999999999886 79999999999877654
No 30
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=5.1e-14 Score=107.71 Aligned_cols=64 Identities=25% Similarity=0.552 Sum_probs=58.7
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
.++|++|++.|+.++.+.++++.||.+||+|..|+++|..+.|+.. ++.+||+.||.+.+.+..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~y~~~f~~kc 78 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASL-HGRIYCKPHFNQLFKSKG 78 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCS-SSCCCCHHHHHHHSCCCS
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeE-CCEEECHHHHHHHhCCCc
Confidence 5889999999998899999999999999999999999999888885 799999999998877654
No 31
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=3.1e-14 Score=106.24 Aligned_cols=64 Identities=17% Similarity=0.531 Sum_probs=57.4
Q ss_pred CCCcccccCceeeccee-EEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCccccc
Q psy11691 94 KLNSCSLCGEKVYLAQR-FAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSL 158 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~Er-I~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I 158 (271)
++++|++|++.|+.+++ +.++++.||++||+|..|+++|..+.|+.. ++.+||+.||.+.+++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~f~~~ 78 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPK-GEDFYCVTCHETKFASG 78 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEE-TTEEEEHHHHHHHTSCC
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEee-CCEEECHHHHHHHhCCC
Confidence 46899999999987765 889999999999999999999999999886 79999999999777654
No 32
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.42 E-value=3.7e-14 Score=102.51 Aligned_cols=61 Identities=28% Similarity=0.445 Sum_probs=54.6
Q ss_pred CCCcccccCceeeccee-EEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcc
Q psy11691 94 KLNSCSLCGEKVYLAQR-FAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEE 155 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~Er-I~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~ 155 (271)
..++|++|++.|+..++ +.++++.||++||+|..|+++|..+.|+.. +|.+||+.||.+.|
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEF-EGRKYCEHDFQMLF 71 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEE-TTEEECHHHHHHHT
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeE-CCeEeCHHHHHHhh
Confidence 35789999999988886 579999999999999999999999888886 79999999998654
No 33
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=103.21 Aligned_cols=65 Identities=25% Similarity=0.490 Sum_probs=56.9
Q ss_pred CCCcccccCceeec-ceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 94 KLNSCSLCGEKVYL-AQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~-~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
++++|++|++.|+. ++.+.++++.||.+||+|..|+++|.+..|+.. ++.+||+.||.+.+++..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~-~~~~~C~~c~~~~~~~~C 79 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQ-DSELLCNDCYCSAFSSGP 79 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEE-TTEEEETTTSSCCGGGSS
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEee-CCEEECHHHHhhhcCCCC
Confidence 46899999999974 445778999999999999999999999889886 799999999998877643
No 34
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=7.7e-14 Score=103.66 Aligned_cols=64 Identities=20% Similarity=0.428 Sum_probs=57.5
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
++++|++|+++|+ ++.|.++++.||.+||+|..|+++|..+.|+.. ++.+||+.||.+.++++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~~y~~~f~~~C 77 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFEL-DGRPFCELHYHHRRGSGP 77 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEES-SSCEECHHHHHHHHSSSC
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeE-CCEEECHHHHHHHcCCCC
Confidence 4689999999997 478999999999999999999999999889886 799999999998877654
No 35
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=7.2e-14 Score=104.69 Aligned_cols=63 Identities=27% Similarity=0.495 Sum_probs=55.8
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
..++|++|++.|+ ++.|.++++.||++||+|..|+++|....| .. ++.+||+.||.+.++++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~-~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-EL-KGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EE-TTEEECHHHHHTTSCCSS
T ss_pred CCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eE-CCEEeCHHHHHHhCCCCC
Confidence 3589999999997 778999999999999999999999998754 64 799999999998887753
No 36
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=1.1e-13 Score=103.32 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=56.8
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
++++|++|+++|+ ++.+.++++.||++||+|..|+++|.+..|+...++.+||+.||.+.+++..
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C 78 (81)
T 2dlo_A 14 TLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78 (81)
T ss_dssp SCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSS
T ss_pred CCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcC
Confidence 4689999999996 6689999999999999999999999988787643689999999998877654
No 37
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=99.62 Aligned_cols=59 Identities=24% Similarity=0.513 Sum_probs=52.8
Q ss_pred CCCcccccCceeecc-eeEEeeCceec--cccccccccCCccCCcCeeecCCCeeec-cCCCCC
Q psy11691 94 KLNSCSLCGEKVYLA-QRFAFNARLFH--RTCFKCARCQSQLTCINAYETHTGQFCC-EVCPDE 153 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~-ErI~a~gk~wH--~~CFrC~~C~k~L~s~~f~~~~dG~~yC-k~CY~~ 153 (271)
++++|++|+++|+.+ +.|.++++.|| ++||+|..|+++|.+..|+.. +|.+|| +.||.+
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~~C~~k 63 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPV-EGMVFCSVECKKR 63 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEE-TTEEESSHHHHHT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEE-CCEEecCHHHhhh
Confidence 357899999999874 78999999999 999999999999999889886 799999 889874
No 38
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-13 Score=102.20 Aligned_cols=58 Identities=21% Similarity=0.509 Sum_probs=52.5
Q ss_pred CCCcccccCceeec----ceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCC
Q psy11691 94 KLNSCSLCGEKVYL----AQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPD 152 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~----~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~ 152 (271)
++++|++|++.|+. .+.+.++++.||++||+|..|+++|.+..|+.. ++.+||+.||.
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~-~~~~yC~~cy~ 75 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFH-QEQVYCPDCAK 75 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEE-TTEECCHHHHH
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeE-CCEEEChHHhc
Confidence 46899999999973 477999999999999999999999999889886 79999999986
No 39
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=1.3e-13 Score=102.33 Aligned_cols=64 Identities=20% Similarity=0.407 Sum_probs=57.0
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCcccccC
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLT 159 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~~~~I~ 159 (271)
++++|++|++.|. ++.|.++++.||.+||+|..|+++|....|+.. ++.+||+.||.+.+++..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~f~~~c 77 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSR-DEDPYCVACFGELFASGP 77 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEEC-SSSEEEHHHHHHHTTCST
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeE-CCEEECHHHHHHHcCCCC
Confidence 4689999999996 568999999999999999999999998889885 799999999998777653
No 40
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.37 E-value=2.9e-13 Score=109.12 Aligned_cols=64 Identities=20% Similarity=0.445 Sum_probs=54.6
Q ss_pred CcccccCceeeccee-EEeeCceeccccccccccCCccCCc-CeeecCCCeeeccCCCCCcccccCC
Q psy11691 96 NSCSLCGEKVYLAQR-FAFNARLFHRTCFKCARCQSQLTCI-NAYETHTGQFCCEVCPDEEERSLTD 160 (271)
Q Consensus 96 ~kCa~Cgk~V~~~Er-I~a~gk~wH~~CFrC~~C~k~L~s~-~f~~~~dG~~yCk~CY~~~~~~I~~ 160 (271)
++|++|++.|+..+. +.++++.||.+||+|..|+++|..+ .|+.. ++.+||+.||.+.+.+...
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~~~~~~ 74 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWTKINGG 74 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHHHHHTC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHHhccccC
Confidence 389999999987665 6899999999999999999999544 68875 7999999999988766543
No 41
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=3.3e-13 Score=107.43 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCC--cCeeecCCCeeeccCCCCCcccccCC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTC--INAYETHTGQFCCEVCPDEEERSLTD 160 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s--~~f~~~~dG~~yCk~CY~~~~~~I~~ 160 (271)
.++|++|+++|+..+.+.++++.||++||+|..|+++|.. ..|+.. |+.+||+.||.+.|++...
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~-~g~~yC~~~y~~~f~~~c~ 69 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLRLGGSGGH 69 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCB-TTBCCCHHHHHHHHTSCCS
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEE-CCeeechHHHHHHhCcccC
Confidence 5789999999987778999999999999999999999985 478885 7999999999998887643
No 42
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=5.7e-13 Score=99.48 Aligned_cols=60 Identities=17% Similarity=0.374 Sum_probs=52.6
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCCCc
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEE 154 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~ 154 (271)
++++|++|++.|+ ++.|.++++.||++||+|..|+++|..+.++..+++.+||+.||.+.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred hCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 4689999999997 78899999999999999999999999888877655568999999843
No 43
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=3.3e-13 Score=100.62 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=53.3
Q ss_pred CCCcccccCceeecceeEEeeCceeccccccccccCCccCC-cCeeecCCCeeeccCCCCCcccc
Q psy11691 94 KLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTC-INAYETHTGQFCCEVCPDEEERS 157 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s-~~f~~~~dG~~yCk~CY~~~~~~ 157 (271)
++++|++|++.|+ ++.+.++++.||++||+|..|+++|.. ..|....++.+||+.||.+.+++
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 4689999999997 778999999999999999999999975 45552247999999999876653
No 44
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.02 E-value=5.1e-11 Score=95.85 Aligned_cols=59 Identities=22% Similarity=0.503 Sum_probs=51.1
Q ss_pred cccccCceeecce-eEEeeCceeccccccccccCCccC-CcCeeecCCCeeeccCCCCCccc
Q psy11691 97 SCSLCGEKVYLAQ-RFAFNARLFHRTCFKCARCQSQLT-CINAYETHTGQFCCEVCPDEEER 156 (271)
Q Consensus 97 kCa~Cgk~V~~~E-rI~a~gk~wH~~CFrC~~C~k~L~-s~~f~~~~dG~~yCk~CY~~~~~ 156 (271)
+|.+|+++|+..| .+.++++.||.+||+|..|+++|. +..|+.. ++.+||+.||.+.++
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~-~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLI-NSDIVCEQDIYEWTK 128 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEE-CCEEEcHHHHHHHhh
Confidence 8999999998766 578999999999999999999995 4558875 799999999986543
No 45
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=98.99 E-value=2.5e-10 Score=97.97 Aligned_cols=60 Identities=22% Similarity=0.513 Sum_probs=51.6
Q ss_pred cccccCceeeccee-EEeeCceeccccccccccCCccCC-cCeeecCCCeeeccCCCCCcccc
Q psy11691 97 SCSLCGEKVYLAQR-FAFNARLFHRTCFKCARCQSQLTC-INAYETHTGQFCCEVCPDEEERS 157 (271)
Q Consensus 97 kCa~Cgk~V~~~Er-I~a~gk~wH~~CFrC~~C~k~L~s-~~f~~~~dG~~yCk~CY~~~~~~ 157 (271)
+|.+|++.|+..+. +.++++.||++||+|..|++.|.. ..|+.. ++.+||+.||.+.+.+
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHDRPTALIN 132 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGCCTTTC-
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEE-CCeEECHHHHHHHhcc
Confidence 79999999987665 689999999999999999999965 457775 7999999999977653
No 46
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=98.95 E-value=2.5e-10 Score=91.39 Aligned_cols=60 Identities=22% Similarity=0.434 Sum_probs=51.9
Q ss_pred CCCcccccCceeecce-eEEeeCceec--cccccccccCCccCCcCeeecCCCeeeccCCCCCc
Q psy11691 94 KLNSCSLCGEKVYLAQ-RFAFNARLFH--RTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEE 154 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~E-rI~a~gk~wH--~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~~ 154 (271)
++++|++|+++|...+ .|.++++.|| .+||+|..|+++|.+..|+.. ++.+||+.+|.+.
T Consensus 62 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~-~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 62 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPV-EGMVFCSVECKKR 124 (126)
T ss_dssp SCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEE-TTEEESSHHHHHS
T ss_pred cCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeE-CCEEcchHHhhhh
Confidence 4589999999997644 5899999999 999999999999998888875 7999999766543
No 47
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.94 E-value=1.3e-10 Score=97.97 Aligned_cols=63 Identities=19% Similarity=0.389 Sum_probs=53.2
Q ss_pred CCCcccccCceeeccee-EEeeCceeccccccccccCCccCCc-CeeecCCCeeeccCCCCCccc
Q psy11691 94 KLNSCSLCGEKVYLAQR-FAFNARLFHRTCFKCARCQSQLTCI-NAYETHTGQFCCEVCPDEEER 156 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~Er-I~a~gk~wH~~CFrC~~C~k~L~s~-~f~~~~dG~~yCk~CY~~~~~ 156 (271)
++++|.+|++.|...+. +.++++.||.+||+|..|++.|..+ .|+...|+.+||+.||.+.++
T Consensus 64 f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 64 FGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp HSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred ccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence 45899999999987775 5799999999999999999999854 465545799999999986654
No 48
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.92 E-value=2.1e-10 Score=97.83 Aligned_cols=61 Identities=20% Similarity=0.387 Sum_probs=51.5
Q ss_pred CCCcccccCceeeccee-EEeeCceeccccccccccCCccCCc-CeeecCCCeeeccCCCCCc
Q psy11691 94 KLNSCSLCGEKVYLAQR-FAFNARLFHRTCFKCARCQSQLTCI-NAYETHTGQFCCEVCPDEE 154 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~Er-I~a~gk~wH~~CFrC~~C~k~L~s~-~f~~~~dG~~yCk~CY~~~ 154 (271)
+.++|.+|++.|...+. +.+.++.||+.||+|..|+++|..+ .|+...++++||+.||.+.
T Consensus 118 f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 118 FGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp TSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred cccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 56899999999987665 5799999999999999999999864 4555457999999999743
No 49
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.51 E-value=2.2e-08 Score=63.35 Aligned_cols=29 Identities=28% Similarity=0.808 Sum_probs=27.8
Q ss_pred CCcccccCceeecceeEEeeCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF 123 (271)
+++|++|+|.||++|++.++|+.||+.||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 57899999999999999999999999998
No 50
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=98.11 E-value=2.6e-07 Score=87.21 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=45.0
Q ss_pred CCCCCCCcccCCCCC-CccccchhcchhhhhhcccCCCCCceEEecCCccCchh
Q psy11691 184 NSDKSTNLLTDSEPS-THCDSNLVTASVESTNMERNMDNDDLNILNKCTTDDDK 236 (271)
Q Consensus 184 Fs~ks~~ll~d~~p~-~~c~~~~~~~~~e~~~~~~~~d~~~~~i~~~c~~~~~~ 236 (271)
.++.++..|.++.|. ..-..++...|.+..+|+.|.|||+|+|+|||||||++
T Consensus 11 ~~l~~P~~l~~~~Pls~~~~~~v~~~R~~i~~Il~G~d~rllVIaGPCSied~e 64 (346)
T 3tqk_A 11 KVLIPAEVLIQDIPLLKTSFETVRKSRKEIANIIHGNDDRVAVVVGPCSIHDPA 64 (346)
T ss_dssp CCCCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTSSCSEEEEEECSSCSCHH
T ss_pred ccCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCccCCHH
Confidence 356677778888888 55667777888899999999999999999999999975
No 51
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.10 E-value=1.4e-06 Score=66.72 Aligned_cols=36 Identities=14% Similarity=0.469 Sum_probs=32.2
Q ss_pred CCCcccccCceeecce-eEEeeCceeccccccccccC
Q psy11691 94 KLNSCSLCGEKVYLAQ-RFAFNARLFHRTCFKCARCQ 129 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~E-rI~a~gk~wH~~CFrC~~C~ 129 (271)
+.++|.+|++.|..++ .|.++++.||++||+|..|+
T Consensus 65 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 65 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred cCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 4689999999997665 68999999999999999996
No 52
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=9.5e-06 Score=59.95 Aligned_cols=48 Identities=10% Similarity=-0.039 Sum_probs=39.1
Q ss_pred CCeeeccCCCCCcccccCCCCCCCCCCC-CceeecCccccCCCCCCCCC
Q psy11691 142 TGQFCCEVCPDEEERSLTDPLRSSDRPD-GHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 142 dG~~yCk~CY~~~~~~I~~rc~~~~~~~-~~I~~gg~~YH~ecFs~ks~ 189 (271)
+|.+||+.||.+.+.++...|+..+.++ ..+.+.+..||++||.|..+
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C 49 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRC 49 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTT
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCC
Confidence 4789999999999999888888877743 44567899999999995443
No 53
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=97.87 E-value=1.3e-06 Score=83.29 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccCCCCC-CccccchhcchhhhhhcccCCCCCceEEecCCccCchh
Q psy11691 182 ELNSDKSTNLLTDSEPS-THCDSNLVTASVESTNMERNMDNDDLNILNKCTTDDDK 236 (271)
Q Consensus 182 ecFs~ks~~ll~d~~p~-~~c~~~~~~~~~e~~~~~~~~d~~~~~i~~~c~~~~~~ 236 (271)
....+.++..|..+.|. ..-..++...|++..+|+.|.|+|+|+|+|||||||++
T Consensus 27 ~~~~l~~P~~l~~~~P~~~~~~~~v~~~r~~i~~Il~g~d~rllvIaGPCSIed~e 82 (370)
T 1of8_A 27 GYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLE 82 (370)
T ss_dssp EEECCCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEEEECSCCCCHH
T ss_pred ccccCCCHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCcCCCHH
Confidence 34566677778888888 44556777777788999999999999999999999975
No 54
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1.9e-05 Score=57.48 Aligned_cols=48 Identities=8% Similarity=-0.072 Sum_probs=39.4
Q ss_pred CeeeccCCCCCcccccCCCCCCCCCC----CCceeecCccccCCCCCCCCCC
Q psy11691 143 GQFCCEVCPDEEERSLTDPLRSSDRP----DGHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 143 G~~yCk~CY~~~~~~I~~rc~~~~~~----~~~I~~gg~~YH~ecFs~ks~~ 190 (271)
+.+||+.||.+.++++...|+..+.. .+.+.+.+..||++||.|..+.
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~ 53 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCS 53 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSC
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcC
Confidence 67999999999999888888887774 3567789999999999955443
No 55
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.84 E-value=1.5e-05 Score=58.76 Aligned_cols=46 Identities=11% Similarity=-0.115 Sum_probs=38.7
Q ss_pred CeeeccCCCCCcccccCCCCCCCCCCCCceeecCccccCCCCCCCCC
Q psy11691 143 GQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 143 G~~yCk~CY~~~~~~I~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks~ 189 (271)
+.+||+.||.+++++....|...+. ++.+.+.+..||++||.|..+
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C 47 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSC 47 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTT
T ss_pred CCccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCC
Confidence 5789999999999988888887776 567788999999999995443
No 56
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.80 E-value=2.7e-05 Score=57.07 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=38.5
Q ss_pred CCeeeccCCCCCcccccCCCCCCCCCCCCceeecCccccCCCCCCCC
Q psy11691 142 TGQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKS 188 (271)
Q Consensus 142 dG~~yCk~CY~~~~~~I~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks 188 (271)
+|++||+.||.+.+.+....|+..+.. +.|.+.+..||++||.|..
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~ 46 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQ-GGVTYRDQPWHRECLVCTG 46 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCS-CCEESSSSEECTTTCBCSS
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecC-cEEEECCchhhhhhCCccc
Confidence 478999999999998888888877764 5678899999999999543
No 57
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.79 E-value=2.5e-05 Score=57.52 Aligned_cols=47 Identities=6% Similarity=0.011 Sum_probs=39.2
Q ss_pred CeeeccCCCCCcccccCCCCCCCCCCCC-ceeecCccccCCCCCCCCC
Q psy11691 143 GQFCCEVCPDEEERSLTDPLRSSDRPDG-HHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 143 G~~yCk~CY~~~~~~I~~rc~~~~~~~~-~I~~gg~~YH~ecFs~ks~ 189 (271)
+.+||+.||.+.+.++..+|+..+.+++ .+.+.+..||++||.|..+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C 49 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNC 49 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSS
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhC
Confidence 6799999999999988888888777654 4678999999999995544
No 58
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.74 E-value=3.2e-05 Score=57.04 Aligned_cols=47 Identities=11% Similarity=-0.070 Sum_probs=37.7
Q ss_pred CCeeeccCCCCCcccccCCCCCCCCCCCCceeecCccccCCCCCCCCCC
Q psy11691 142 TGQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 142 dG~~yCk~CY~~~~~~I~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks~~ 190 (271)
||.+||+.||. .+.++...|...+. ++.+.+.+..||++||.|..++
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~ 48 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCH 48 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSC
T ss_pred cCCEECHHHhh-cCCCccccCCCeec-ceeEEECCccccHHhcCcccCC
Confidence 68999999999 67777777777666 4577889999999999965443
No 59
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.74 E-value=4.1e-05 Score=56.12 Aligned_cols=48 Identities=6% Similarity=-0.265 Sum_probs=39.0
Q ss_pred CCeeeccCCCCCcccccCCCCCCCCCCCCceeecCccccCCCCCCCCCC
Q psy11691 142 TGQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 142 dG~~yCk~CY~~~~~~I~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks~~ 190 (271)
++++||+.||.+.+.+....|...+.. +.|.+.+..||++||.|..+.
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~ 48 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCF 48 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSC
T ss_pred CCCccchhHHhhhcCCccccCCCeecc-eeEEECCCeEecCcCChhhCC
Confidence 378999999999998888878776664 567889999999999954433
No 60
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=97.70 E-value=3.5e-06 Score=79.80 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=42.8
Q ss_pred CCCCCCCcccCCCCC-CccccchhcchhhhhhcccCCCCCceEEecCCccCchh
Q psy11691 184 NSDKSTNLLTDSEPS-THCDSNLVTASVESTNMERNMDNDDLNILNKCTTDDDK 236 (271)
Q Consensus 184 Fs~ks~~ll~d~~p~-~~c~~~~~~~~~e~~~~~~~~d~~~~~i~~~c~~~~~~ 236 (271)
..+.++..|.++.|. ..-.+++...|.+..+|+.|.|+|+|+|+|||||||++
T Consensus 14 ~~l~~p~~l~~~~p~~~~~~~~v~~~r~~i~~i~~G~d~rllvIaGPCsie~~e 67 (350)
T 1n8f_A 14 KELLPPVALLQKFPATENAANTVAHARKAIHKILKGNDDRLLVVIGPCSIHDPV 67 (350)
T ss_dssp ECCCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTTSCCCEEEEEECSSCCCHH
T ss_pred ccCCCHHHHHHhCCCCHHHHHHHHHHHHhHhceeeCCCCceEEEEeCCcCCCHH
Confidence 455667777777777 44456666677788899999999999999999999997
No 61
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.68 E-value=2.9e-05 Score=57.26 Aligned_cols=46 Identities=4% Similarity=-0.216 Sum_probs=38.6
Q ss_pred CeeeccCCCCCcccccCCCCCCCCCCCCceeecCccccCCCCCCCCC
Q psy11691 143 GQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 143 G~~yCk~CY~~~~~~I~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks~ 189 (271)
..+||+.||.+.+++....|...+. ++.+.+.+..||++||.|..+
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C 47 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVC 47 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSS
T ss_pred CCCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccC
Confidence 4689999999999988888887766 567889999999999995443
No 62
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=95.17 E-value=0.011 Score=46.72 Aligned_cols=57 Identities=7% Similarity=0.058 Sum_probs=39.3
Q ss_pred cccccCceeec--ceeEEeeCceeccccc--------cccccCCccCC-------------cCeeecCCCeeeccCCCCC
Q psy11691 97 SCSLCGEKVYL--AQRFAFNARLFHRTCF--------KCARCQSQLTC-------------INAYETHTGQFCCEVCPDE 153 (271)
Q Consensus 97 kCa~Cgk~V~~--~ErI~a~gk~wH~~CF--------rC~~C~k~L~s-------------~~f~~~~dG~~yCk~CY~~ 153 (271)
+|..|++.+.. ...+..+|+.|...|| +|..|++.+.. ..|+.. ++.+||+.||..
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~~~g~~~l~g~~f~~~-~~~~yC~~~~~~ 112 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDE-DERLITRLENTQ 112 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESSSSSSSSCCSCTTCCT-TCCCCEECTTTT
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheEEcCCcCCCCCccEec-CCEeEccCcchh
Confidence 47777777731 2346677888887776 68888776653 355554 688999999885
Q ss_pred c
Q psy11691 154 E 154 (271)
Q Consensus 154 ~ 154 (271)
.
T Consensus 113 ~ 113 (122)
T 1m3v_A 113 F 113 (122)
T ss_dssp T
T ss_pred c
Confidence 4
No 63
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=95.07 E-value=0.0084 Score=55.58 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=23.4
Q ss_pred hhhhcccCCCCCceEEecCCccCchh
Q psy11691 211 ESTNMERNMDNDDLNILNKCTTDDDK 236 (271)
Q Consensus 211 e~~~~~~~~d~~~~~i~~~c~~~~~~ 236 (271)
+..+|+.|.|+|+++|.|||||||.+
T Consensus 30 ~~~~i~~G~~~~l~vIaGPCsies~e 55 (298)
T 3fs2_A 30 KVGNVTFSNSAPLALIAGPCQMETRD 55 (298)
T ss_dssp EETTEEECTTSCCEEEEECSBCCCHH
T ss_pred EECCEEECCCCceEEEEeCCcCCCHH
Confidence 34589999999999999999999986
No 64
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=94.49 E-value=0.015 Score=53.66 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.6
Q ss_pred hhhcccCCCCCceEEecCCccCchh
Q psy11691 212 STNMERNMDNDDLNILNKCTTDDDK 236 (271)
Q Consensus 212 ~~~~~~~~d~~~~~i~~~c~~~~~~ 236 (271)
..+|+.|.|+|+++|.|||||||.+
T Consensus 7 ~~~i~iG~~~~~~vIaGPCsie~~~ 31 (288)
T 3tml_A 7 LCDFEVGLDQPFFLIAGTCVVESEQ 31 (288)
T ss_dssp ETTEEESTTSCCEEEEECSBCCCHH
T ss_pred ECCEEECCCCceEEEEeCCcCCCHH
Confidence 4578999999999999999999985
No 65
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=94.32 E-value=0.011 Score=54.42 Aligned_cols=23 Identities=0% Similarity=-0.256 Sum_probs=21.2
Q ss_pred hcccCCCCCceEEecCCccCchh
Q psy11691 214 NMERNMDNDDLNILNKCTTDDDK 236 (271)
Q Consensus 214 ~~~~~~d~~~~~i~~~c~~~~~~ 236 (271)
++..|.|+++++|.|||||||.+
T Consensus 12 ~~~~G~~~~~~viaGPCsie~~e 34 (285)
T 3sz8_A 12 GVTAGNSLPFVLFGGINVLESLD 34 (285)
T ss_dssp TEEEETTSCCEEEEEEEECCCHH
T ss_pred CceECCCCceEEEEeCCcCCCHH
Confidence 57889999999999999999986
No 66
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=93.29 E-value=0.088 Score=39.13 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=16.6
Q ss_pred CceeecCccccCCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~~ 190 (271)
+.|.+.|..||++||.|..+.
T Consensus 38 ~~v~a~~~~~H~~CF~C~~C~ 58 (90)
T 2dar_A 38 PFLVALGKSWHPEEFNCAHCK 58 (90)
T ss_dssp CEEEETTEEECTTTCBCSSSC
T ss_pred eEEEECCccccccCCccCCCC
Confidence 567788999999999955443
No 67
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=93.22 E-value=0.056 Score=37.69 Aligned_cols=22 Identities=9% Similarity=-0.071 Sum_probs=16.7
Q ss_pred CceeecCccccCCCCCCCCCCc
Q psy11691 170 GHHAIGDDRYHAELNSDKSTNL 191 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~~l 191 (271)
+.+.+.|..||++||.|..+..
T Consensus 18 ~~~~a~~~~~H~~CF~C~~C~~ 39 (66)
T 1nyp_A 18 RVVNAMGKQWHVEHFVCAKCEK 39 (66)
T ss_dssp CEECCTTSBEETTTCBCTTTCC
T ss_pred eEEEECccccccCcCEECCCCC
Confidence 4567888999999999655443
No 68
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=93.05 E-value=0.093 Score=37.63 Aligned_cols=21 Identities=5% Similarity=-0.134 Sum_probs=16.6
Q ss_pred CCceeecCccccCCCCCCCCC
Q psy11691 169 DGHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 169 ~~~I~~gg~~YH~ecFs~ks~ 189 (271)
++.|++.+..||++||.|..+
T Consensus 22 ~~~v~a~~~~~H~~CF~C~~C 42 (76)
T 2cu8_A 22 AEKVSSLGKDWHKFCLKCERC 42 (76)
T ss_dssp TTEEEETTEEEETTTCBCSSS
T ss_pred CeEEEECCeEeeCCCCCCCCC
Confidence 356788899999999995443
No 69
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.69 E-value=0.17 Score=36.26 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.2
Q ss_pred CceeecCccccCCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~~ 190 (271)
+.|.+.|..||++||.|..++
T Consensus 18 ~~v~a~~~~wH~~CF~C~~C~ 38 (73)
T 1wig_A 18 RVLEAGEKHYHPSCALCVRCG 38 (73)
T ss_dssp CCBCCSSCCBCTTTSCCSSSC
T ss_pred eeEEeCCCCCCCCcCEeCCCC
Confidence 456788899999999965443
No 70
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.33 E-value=0.12 Score=36.38 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=15.3
Q ss_pred CceeecCccccCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~ 189 (271)
..+.+.|..||++||.|..+
T Consensus 20 ~~~~a~~~~~H~~CF~C~~C 39 (72)
T 1wyh_A 20 RKLEYGGQTWHEHCFLCSGC 39 (72)
T ss_dssp CEECSTTCCEETTTCBCTTT
T ss_pred cEEEECccccCcccCeECCC
Confidence 45567889999999995443
No 71
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.30 E-value=0.14 Score=35.99 Aligned_cols=21 Identities=5% Similarity=-0.031 Sum_probs=16.0
Q ss_pred CceeecCccccCCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~~ 190 (271)
..+.+.|..||++||.|..+.
T Consensus 20 ~~~~a~~~~~H~~CF~C~~C~ 40 (72)
T 1x4k_A 20 RKMEYKGSSWHETCFICHRCQ 40 (72)
T ss_dssp CEEEETTEEEETTTTCCSSSC
T ss_pred eEEEECcCeecccCCcccccC
Confidence 356788999999999965443
No 72
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.28 E-value=0.15 Score=35.75 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=15.6
Q ss_pred CceeecCccccCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~ 189 (271)
+.+.+.+..||++||.|..+
T Consensus 18 ~~~~a~~~~~H~~CF~C~~C 37 (70)
T 2d8z_A 18 GGVTYREQPWHKECFVCTAC 37 (70)
T ss_dssp SEEESSSSEEETTTSBCSSS
T ss_pred ceEEECccccCCCCCccCCC
Confidence 35678889999999995543
No 73
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=91.91 E-value=0.15 Score=40.08 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=16.8
Q ss_pred ceeecCccccCCCCCCCCCCcc
Q psy11691 171 HHAIGDDRYHAELNSDKSTNLL 192 (271)
Q Consensus 171 ~I~~gg~~YH~ecFs~ks~~ll 192 (271)
.+.+.+..||.+||.|..++..
T Consensus 24 ~~~a~~~~~H~~CF~C~~C~~~ 45 (123)
T 2l3k_A 24 TMRVKDKVYHLECFKCAACQKH 45 (123)
T ss_dssp CCCCSSCCCCTTTCBCTTTCCB
T ss_pred EEEECCcccccccCccccCCCC
Confidence 4467889999999998765443
No 74
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.88 E-value=0.17 Score=35.51 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=16.4
Q ss_pred CceeecCccccCCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~~ 190 (271)
+.+.+.+..||++||.|..+.
T Consensus 18 ~~~~a~~~~~H~~CF~C~~C~ 38 (70)
T 2d8x_A 18 RVIKAMNNSWHPECFRCDLCQ 38 (70)
T ss_dssp CCEEETTEEECTTTSBCSSSC
T ss_pred eEEEECcccccccCCEeCCCC
Confidence 456788999999999965443
No 75
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.55 E-value=0.21 Score=36.30 Aligned_cols=33 Identities=18% Similarity=0.491 Sum_probs=22.6
Q ss_pred CeeeccCCCCCcccccCCCCCCCCCCCCceeecCccccCCCCCCCC
Q psy11691 143 GQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKS 188 (271)
Q Consensus 143 G~~yCk~CY~~~~~~I~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks 188 (271)
+...|..|.. +|.+ +.|.+.|..||++||.|..
T Consensus 14 ~~~~C~~C~~----~I~~---------~~v~a~~~~~H~~CF~C~~ 46 (79)
T 2cor_A 14 GKYICQKCHA----IIDE---------QPLIFKNDPYHPDHFNCAN 46 (79)
T ss_dssp CCCBCTTTCC----BCCS---------CCCCCSSSCCCTTTSBCSS
T ss_pred CCCCCccCCC----Eecc---------eEEEECcceeCCCCCEeCC
Confidence 3456766666 3432 4567889999999999543
No 76
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.53 E-value=0.16 Score=36.38 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.1
Q ss_pred CceeecCccccCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKS 188 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks 188 (271)
+.+.+.+..||++||.|..
T Consensus 22 ~~~~a~~~~wH~~CF~C~~ 40 (76)
T 1x68_A 22 KFICFQDSQWHSECFNCGK 40 (76)
T ss_dssp CEEEETTEEEEGGGCBCTT
T ss_pred eeEEECCcccCcccCChhh
Confidence 4567889999999999543
No 77
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=91.46 E-value=0.058 Score=49.17 Aligned_cols=24 Identities=0% Similarity=-0.166 Sum_probs=21.4
Q ss_pred hcccCCCCCceEEecCCccCchhh
Q psy11691 214 NMERNMDNDDLNILNKCTTDDDKV 237 (271)
Q Consensus 214 ~~~~~~d~~~~~i~~~c~~~~~~~ 237 (271)
+++-|.|+|+++|.||||+||.+.
T Consensus 7 ~~~iG~~~~~~vIAGpc~~~~~e~ 30 (280)
T 2qkf_A 7 DITLGNNSPFVLFGGINVLESLDS 30 (280)
T ss_dssp TEEESTTSCCEEEEEEEECCCHHH
T ss_pred CEEECCCCceEEEEecCCCCCHHH
Confidence 577899999999999999999863
No 78
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.42 E-value=0.18 Score=36.90 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=15.5
Q ss_pred CceeecCccccCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~ 189 (271)
+.+++.+..||.+||.|..+
T Consensus 29 e~v~a~~~~wH~~CF~C~~C 48 (82)
T 2co8_A 29 ERLCVNGHFFHRSCFRCHTC 48 (82)
T ss_dssp TBCCBTTBCCBTTTCBCSSS
T ss_pred eEEEECCCeeCCCcCEEcCC
Confidence 45677889999999995443
No 79
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.07 E-value=0.23 Score=36.30 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=24.5
Q ss_pred CeeeccCCCCCcccccCCCCCCCCCCCCceeecCccccCCCCCCCCCC
Q psy11691 143 GQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 143 G~~yCk~CY~~~~~~I~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks~~ 190 (271)
+...|..|.. +|. .++.|.+.+..||++||.|..+.
T Consensus 14 ~~~~C~~C~~----~I~--------~~~~v~a~~~~wH~~CF~C~~C~ 49 (80)
T 2dj7_A 14 GPSHCAGCKE----EIK--------HGQSLLALDKQWHVSCFKCQTCS 49 (80)
T ss_dssp SCSCCTTTCC----CCS--------SSCCEEETTEEECTTTCBCSSSC
T ss_pred CCCCCcCcCC----eeC--------CCeEEEECCcccccccCCcCcCC
Confidence 4556777766 443 23467788999999999955443
No 80
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=90.95 E-value=0.22 Score=34.62 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=13.6
Q ss_pred eeecCccccCCCCCCCC
Q psy11691 172 HAIGDDRYHAELNSDKS 188 (271)
Q Consensus 172 I~~gg~~YH~ecFs~ks 188 (271)
+.+.|..||.+||.|..
T Consensus 28 ~~~~~~~~H~~CF~C~~ 44 (72)
T 3f6q_B 28 VNSNGELYHEQCFVCAQ 44 (72)
T ss_dssp EEETTEEEETTTSSCTT
T ss_pred EEeCcCeeCcCCCcccC
Confidence 45788999999999543
No 81
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=90.83 E-value=0.33 Score=34.13 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=15.4
Q ss_pred CceeecCccccCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~ 189 (271)
..+.+.+..||++||.|..+
T Consensus 20 ~~~~a~~~~~H~~CF~C~~C 39 (72)
T 1x61_A 20 AGVVALDRVFHVGCFVCSTC 39 (72)
T ss_dssp CCEECSSSEECTTTCBCSSS
T ss_pred eEEEECCCeEcccCCccccc
Confidence 35678899999999995443
No 82
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=90.83 E-value=0.27 Score=36.44 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=16.3
Q ss_pred CceeecCccccCCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~~ 190 (271)
+.|.+.+..||.+||.|..+.
T Consensus 29 ~~v~a~~~~~H~~CF~C~~C~ 49 (91)
T 2d8y_A 29 ERLLANQQVFHISCFRCSYCN 49 (91)
T ss_dssp SEEECSSSEEETTTCBCTTTC
T ss_pred eeEEECCCEECCCCCeeCCCC
Confidence 456788899999999965443
No 83
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=90.76 E-value=0.2 Score=36.29 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=26.9
Q ss_pred CeeeccCCCCCcccccCCCCCCCCCCCCceeecCccccCCCCCCCCCCcccCCCCCCccccchh
Q psy11691 143 GQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKSTNLLTDSEPSTHCDSNLV 206 (271)
Q Consensus 143 G~~yCk~CY~~~~~~I~~rc~~~~~~~~~I~~gg~~YH~ecFs~ks~~ll~d~~p~~~c~~~~~ 206 (271)
....|..|.. +|.+ +.+.+.+..||++||. |..|...|.
T Consensus 14 ~~~~C~~C~~----~I~~---------~~~~a~~~~~H~~CF~------------C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGT----GIVG---------VFVKLRDRHRHPECYV------------CTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCC----CCCS---------SCEECSSCEECTTTTS------------CSSSCCCHH
T ss_pred CCCccccCCC----CccC---------cEEEECcceeCcCcCe------------eCCCCCCCC
Confidence 3456766666 4432 3567888999999999 566666664
No 84
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=90.67 E-value=0.13 Score=36.78 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=15.3
Q ss_pred CceeecCccccCCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKSTN 190 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~~ 190 (271)
+.+.+.|..||++||.|..+.
T Consensus 14 ~~v~a~~~~~H~~CF~C~~C~ 34 (76)
T 1iml_A 14 ERVTSLGKDWHRPCLKCEKCG 34 (76)
T ss_dssp GEEEETTEEEETTTCBCTTTC
T ss_pred eEEEECCccccCCCCCccccC
Confidence 456677889999999955443
No 85
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=90.51 E-value=0.37 Score=33.92 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=15.3
Q ss_pred CceeecCccccCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~ 189 (271)
+.+.+.+..||++||.|..+
T Consensus 22 ~~~~a~~~~wH~~CF~C~~C 41 (72)
T 1x4l_A 22 KYISFEERQWHNDCFNCKKC 41 (72)
T ss_dssp SCEECSSCEECTTTCBCSSS
T ss_pred ceEEECCcccCcccCEeccC
Confidence 35567889999999995443
No 86
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=90.23 E-value=0.31 Score=35.96 Aligned_cols=19 Identities=16% Similarity=-0.066 Sum_probs=13.5
Q ss_pred ceeecCccccCCCCCCCCC
Q psy11691 171 HHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 171 ~I~~gg~~YH~ecFs~ks~ 189 (271)
.+.+.+..||++||.|..+
T Consensus 39 ~~~a~~~~~H~~CF~C~~C 57 (89)
T 1x64_A 39 VVKARDKYRHPECFVCADC 57 (89)
T ss_dssp CEESSSCEECTTTCCCSSS
T ss_pred EEEECCceECccCCEecCC
Confidence 3456678899999995443
No 87
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=90.22 E-value=0.26 Score=34.45 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.4
Q ss_pred CceeecCccccCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKS 188 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks 188 (271)
+.|.+.+..||++||.|..
T Consensus 18 ~~~~a~~~~~H~~CF~C~~ 36 (69)
T 2cur_A 18 GGITYQDQPWHADCFVCVT 36 (69)
T ss_dssp TCEEETTEEECTTTTBCTT
T ss_pred ceEEECccccccCcCEECC
Confidence 4577889999999999543
No 88
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=89.79 E-value=0.1 Score=47.97 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=22.0
Q ss_pred hhcccCCCCCceEEecCCccCchhh
Q psy11691 213 TNMERNMDNDDLNILNKCTTDDDKV 237 (271)
Q Consensus 213 ~~~~~~~d~~~~~i~~~c~~~~~~~ 237 (271)
.+++-|.|+|+++|.|||++||.+.
T Consensus 9 ~~~~iG~~~~~~vIAGpc~~~~~e~ 33 (292)
T 1o60_A 9 GNIDVANDKPFVLFGGMNVLESRDM 33 (292)
T ss_dssp TTEEECTTSCCEEEEEEEECCCHHH
T ss_pred CCEEECCCCceEEEEecCCccCHHH
Confidence 4678899999999999999999863
No 89
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=89.55 E-value=0.22 Score=36.04 Aligned_cols=20 Identities=5% Similarity=-0.152 Sum_probs=15.8
Q ss_pred CceeecCccccCCCCCCCCC
Q psy11691 170 GHHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 170 ~~I~~gg~~YH~ecFs~ks~ 189 (271)
+.+.+.+..||++||.|..+
T Consensus 21 ~~~~a~~~~~H~~CF~C~~C 40 (81)
T 1a7i_A 21 EEVQCDGRSFHRCCFLCMVC 40 (81)
T ss_dssp TEEEETTEEEESSSEECSSS
T ss_pred eeEEeCCcccccccCccCCC
Confidence 46678899999999995443
No 90
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.38 E-value=0.36 Score=34.31 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=13.8
Q ss_pred ceeecCccccCCCCCCC
Q psy11691 171 HHAIGDDRYHAELNSDK 187 (271)
Q Consensus 171 ~I~~gg~~YH~ecFs~k 187 (271)
.+.+.|..||++||.|.
T Consensus 27 ~~~a~~~~~H~~CF~C~ 43 (77)
T 1g47_A 27 IVNSNGELYHEQCFVCA 43 (77)
T ss_dssp CEEETTEEECTTTCCCT
T ss_pred EEEeCccEeccccCeEC
Confidence 34688999999999944
No 91
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=89.12 E-value=0.25 Score=34.42 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=16.5
Q ss_pred CceeecCcccc--CCCCCCCCCC
Q psy11691 170 GHHAIGDDRYH--AELNSDKSTN 190 (271)
Q Consensus 170 ~~I~~gg~~YH--~ecFs~ks~~ 190 (271)
+.+.+.|..|| ++||.|..++
T Consensus 17 ~~v~a~~~~wH~~~~CF~C~~C~ 39 (65)
T 2iyb_E 17 QRVTYNNFSWHASTECFLCSCCS 39 (65)
T ss_dssp CEEEETTEEEETTTTTSBCTTTC
T ss_pred eEEEECCCccCCCCCCEECCCCC
Confidence 46778899999 9999965443
No 92
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=87.47 E-value=0.43 Score=37.89 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=14.8
Q ss_pred ceeecCccccCCCCCCCCC
Q psy11691 171 HHAIGDDRYHAELNSDKST 189 (271)
Q Consensus 171 ~I~~gg~~YH~ecFs~ks~ 189 (271)
.+.+.|..||++||.|..|
T Consensus 76 ~v~a~~~~wH~~CF~C~~C 94 (123)
T 2l4z_A 76 LLYAMDSYWHSRCLKCSSC 94 (123)
T ss_dssp EEEETTEEEETTTSBCTTT
T ss_pred EEEeCCcEEcccccCcCcC
Confidence 3677889999999995443
No 93
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=84.25 E-value=0.6 Score=36.12 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=18.3
Q ss_pred ceeecCccccCCCCCCCCCCcccC
Q psy11691 171 HHAIGDDRYHAELNSDKSTNLLTD 194 (271)
Q Consensus 171 ~I~~gg~~YH~ecFs~ks~~ll~d 194 (271)
.+.+.+..||++||.|..+....+
T Consensus 18 ~~~a~~~~wH~~CF~C~~C~~~L~ 41 (114)
T 1j2o_A 18 FLKAIDQYWHEDCLSCDLCGCRLG 41 (114)
T ss_dssp EEECSSSEECTTTCCCSSSCSCCC
T ss_pred EEEECchhHHHhcCcccccCCchh
Confidence 466788999999999976654443
No 94
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=73.76 E-value=1.4 Score=40.06 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=19.7
Q ss_pred hcccCCCCCceEEecCCccCchhh
Q psy11691 214 NMERNMDNDDLNILNKCTTDDDKV 237 (271)
Q Consensus 214 ~~~~~~d~~~~~i~~~c~~~~~~~ 237 (271)
+++-|.| ++++|.|||++||.+.
T Consensus 31 ~~~iG~~-~~~vIAgpc~~~~~e~ 53 (276)
T 1vs1_A 31 GVRIGGG-SKAVIAGPCSVESWEQ 53 (276)
T ss_dssp TEEEBTT-BCEEEEECSBCCCHHH
T ss_pred CEEECCC-CeEEEEecCCCCCHHH
Confidence 5667777 8999999999999874
No 95
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=70.96 E-value=1.8 Score=38.86 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=19.1
Q ss_pred hhcccCCCCCceEEecCCccCchhh
Q psy11691 213 TNMERNMDNDDLNILNKCTTDDDKV 237 (271)
Q Consensus 213 ~~~~~~~d~~~~~i~~~c~~~~~~~ 237 (271)
.+++-|.| +++|.|||++||.+.
T Consensus 16 ~~~~iG~~--~~vIAgpc~~~~~e~ 38 (262)
T 1zco_A 16 NDVKFGEG--FTIIAGPCSIESREQ 38 (262)
T ss_dssp TTEEETSS--CEEEEECSBCCCHHH
T ss_pred CCEEECCC--cEEEEeCCCCCCHHH
Confidence 35677777 999999999999864
No 96
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=68.50 E-value=12 Score=26.06 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=21.3
Q ss_pred CCcccccCceeecceeEE--eeCceecccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFA--FNARLFHRTCFK 124 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~--a~gk~wH~~CFr 124 (271)
...|..|...+...+.+. .-+..||..|+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~ 46 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIV 46 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTH
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHH
Confidence 467999998875544432 357888888874
No 97
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.15 E-value=2.7 Score=30.89 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=21.7
Q ss_pred CCcccccCceeecceeEEeeCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF 123 (271)
...|+.|...|..+++...-+..||..|+
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 36799999999766654445677888887
No 98
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=61.32 E-value=3 Score=36.92 Aligned_cols=38 Identities=18% Similarity=0.530 Sum_probs=26.8
Q ss_pred CCcccccCceeecceeEEeeCceeccccc----------cccccCCcc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF----------KCARCQSQL 132 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF----------rC~~C~k~L 132 (271)
...|..|...|..+.+-.--+..||..|+ +|..|+..+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 46799999999766543335678888888 566666554
No 99
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=61.21 E-value=3.1 Score=39.13 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=19.3
Q ss_pred hcccCCCCCceEEecCCccCchhh
Q psy11691 214 NMERNMDNDDLNILNKCTTDDDKV 237 (271)
Q Consensus 214 ~~~~~~d~~~~~i~~~c~~~~~~~ 237 (271)
++.-|.| ++++|.||||++|.+.
T Consensus 99 ~~~iG~~-~~~vIAgpcs~es~e~ 121 (350)
T 1vr6_A 99 DVKIGNG-YFTIIAGPCSVEGREM 121 (350)
T ss_dssp SCEESTT-EEEEEEECSBCCCHHH
T ss_pred CEEECCC-CeEEEEeCCCcCCHHH
Confidence 4666776 8999999999999883
No 100
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=60.95 E-value=6.7 Score=25.41 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=26.4
Q ss_pred CCCcccccCceeeccee-E--EeeCceeccccc--------cccccCCccC
Q psy11691 94 KLNSCSLCGEKVYLAQR-F--AFNARLFHRTCF--------KCARCQSQLT 133 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~Er-I--~a~gk~wH~~CF--------rC~~C~k~L~ 133 (271)
....|..|.+.+...+. + ..-+..||..|+ +|..|+..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45779999988754322 2 234788999997 3666666553
No 101
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.45 E-value=8.6 Score=26.82 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=28.0
Q ss_pred CCcccccCceeecceeEEe--eCceecccccc--------ccccCCccCC
Q psy11691 95 LNSCSLCGEKVYLAQRFAF--NARLFHRTCFK--------CARCQSQLTC 134 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a--~gk~wH~~CFr--------C~~C~k~L~s 134 (271)
...|..|...+...+.+.. -+..||..|+. |-.|+..+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4679999988866654433 48899999983 6666655543
No 102
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.78 E-value=7.6 Score=26.18 Aligned_cols=39 Identities=18% Similarity=0.509 Sum_probs=27.1
Q ss_pred CCcccccCceeecc----e--eEEeeCceeccccc--------cccccCCccC
Q psy11691 95 LNSCSLCGEKVYLA----Q--RFAFNARLFHRTCF--------KCARCQSQLT 133 (271)
Q Consensus 95 s~kCa~Cgk~V~~~----E--rI~a~gk~wH~~CF--------rC~~C~k~L~ 133 (271)
...|..|...+... + .+..-|..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 46799999876432 1 23445889999998 4777776664
No 103
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.67 E-value=17 Score=25.07 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=26.3
Q ss_pred CCcccccCceeecceeEE--eeCceecccccc--------ccccCCccC
Q psy11691 95 LNSCSLCGEKVYLAQRFA--FNARLFHRTCFK--------CARCQSQLT 133 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~--a~gk~wH~~CFr--------C~~C~k~L~ 133 (271)
...|..|...+...+.+. .-+..||..|+. |-.|+..+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 467999998875555443 347889998873 555555543
No 104
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=52.62 E-value=18 Score=24.58 Aligned_cols=40 Identities=20% Similarity=0.561 Sum_probs=26.6
Q ss_pred CCcccccCceeecceeEE--eeCceecccccc--------ccccCCccCC
Q psy11691 95 LNSCSLCGEKVYLAQRFA--FNARLFHRTCFK--------CARCQSQLTC 134 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~--a~gk~wH~~CFr--------C~~C~k~L~s 134 (271)
...|..|...+..++.+. .-+..||..|+. |-.|+..|..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 467999988775444333 347889999873 6666655543
No 105
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=47.76 E-value=11 Score=25.57 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=26.4
Q ss_pred CCcccccCceeecceeEEeeCceecccccc--------ccccCCccCC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFK--------CARCQSQLTC 134 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFr--------C~~C~k~L~s 134 (271)
...|..|...+.....+..-|..||..|+. |..|+..+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467999988763222333457888988873 7777766654
No 106
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.21 E-value=23 Score=24.28 Aligned_cols=38 Identities=21% Similarity=0.532 Sum_probs=24.2
Q ss_pred CCcccccCceeecceeEEeeCceecccccc--------ccccCCccC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFK--------CARCQSQLT 133 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFr--------C~~C~k~L~ 133 (271)
...|..|...+. .-.+..-+..||..|+. |-.|+..+.
T Consensus 15 ~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 15 VPECAICLQTCV-HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CCBCSSSSSBCS-SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCccCCcccC-CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 467999988762 22334457888888863 555555554
No 107
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=46.68 E-value=8.1 Score=36.57 Aligned_cols=22 Identities=5% Similarity=0.291 Sum_probs=17.0
Q ss_pred hcccCCCCCceEEecCCccCchh
Q psy11691 214 NMERNMDNDDLNILNKCTTDDDK 236 (271)
Q Consensus 214 ~~~~~~d~~~~~i~~~c~~~~~~ 236 (271)
++.-|. |+.++|+||||++|.+
T Consensus 135 ~~~iG~-~~~~~Iigpcsves~e 156 (385)
T 3nvt_A 135 GLPIGN-GEPVFVFGPCSVESYE 156 (385)
T ss_dssp TEEETS-SSCEEEEECSBCCCHH
T ss_pred CEEECC-CCeEEEEEeCCcCCHH
Confidence 445554 4789999999999876
No 108
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=43.92 E-value=12 Score=24.66 Aligned_cols=43 Identities=16% Similarity=0.453 Sum_probs=29.9
Q ss_pred CCcccccCceeecc----e--eEEeeCceeccccc--------cccccCCccCCcCe
Q psy11691 95 LNSCSLCGEKVYLA----Q--RFAFNARLFHRTCF--------KCARCQSQLTCINA 137 (271)
Q Consensus 95 s~kCa~Cgk~V~~~----E--rI~a~gk~wH~~CF--------rC~~C~k~L~s~~f 137 (271)
...|+.|...+... + .+..-|..||..|+ .|-.|+..+.....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 35699998876432 1 34456889999998 58888888766443
No 109
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=41.46 E-value=23 Score=26.70 Aligned_cols=60 Identities=18% Similarity=0.458 Sum_probs=43.0
Q ss_pred CCcccccCceeecc----e--eEEeeCceeccccc--------cccccCCccCCcCeee--cCCCeeeccCCCCCc
Q psy11691 95 LNSCSLCGEKVYLA----Q--RFAFNARLFHRTCF--------KCARCQSQLTCINAYE--THTGQFCCEVCPDEE 154 (271)
Q Consensus 95 s~kCa~Cgk~V~~~----E--rI~a~gk~wH~~CF--------rC~~C~k~L~s~~f~~--~~dG~~yCk~CY~~~ 154 (271)
...|+.|.+.+... + .+..=|..||..|+ .|-.|++.+....+.. ..+....|..|.+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~ 82 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGY 82 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCcc
Confidence 46799998876322 1 34456899999998 7999999998765532 235667888888743
No 110
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=40.62 E-value=21 Score=23.01 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=21.0
Q ss_pred CCcccccCceeecceeEE---eeCceecccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFA---FNARLFHRTCFK 124 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~---a~gk~wH~~CFr 124 (271)
...|.-|.+.+..++.+. .-+..||..|+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~ 37 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVD 37 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHH
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHH
Confidence 467999988876555422 257889988874
No 111
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=40.16 E-value=19 Score=26.31 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=22.4
Q ss_pred CCCcccccCceeecceeEE--eeCceecccccc
Q psy11691 94 KLNSCSLCGEKVYLAQRFA--FNARLFHRTCFK 124 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI~--a~gk~wH~~CFr 124 (271)
....|..|...+..++.+. .-+..||..|+.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~ 71 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVS 71 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHH
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHH
Confidence 3467999998876665543 347889998873
No 112
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=38.17 E-value=11 Score=25.53 Aligned_cols=42 Identities=17% Similarity=0.449 Sum_probs=29.0
Q ss_pred CCcccccCceeecc----e--eEEeeCceeccccc--------cccccCCccCCcC
Q psy11691 95 LNSCSLCGEKVYLA----Q--RFAFNARLFHRTCF--------KCARCQSQLTCIN 136 (271)
Q Consensus 95 s~kCa~Cgk~V~~~----E--rI~a~gk~wH~~CF--------rC~~C~k~L~s~~ 136 (271)
...|+.|.+.+... + .+..-|..||..|+ .|-.|+..+....
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 46799999876432 2 23345889999998 6777877776543
No 113
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.03 E-value=16 Score=26.26 Aligned_cols=40 Identities=23% Similarity=0.541 Sum_probs=26.3
Q ss_pred CCcccccCceeec-----------cee--EE-eeCceecccccc--------ccccCCccCC
Q psy11691 95 LNSCSLCGEKVYL-----------AQR--FA-FNARLFHRTCFK--------CARCQSQLTC 134 (271)
Q Consensus 95 s~kCa~Cgk~V~~-----------~Er--I~-a~gk~wH~~CFr--------C~~C~k~L~s 134 (271)
...|+-|...+.. .+. +. .-+..||..|+. |-.|++.|..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 3568888776632 222 22 258899999984 8888777654
No 114
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=31.93 E-value=21 Score=30.56 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred CCcccccCceeecceeEEeeCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF 123 (271)
+-.|..||+.|+...-...+|+..-+.||
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~ 200 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDY 200 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHH
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhh
Confidence 57799999999655444555665555554
No 115
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.40 E-value=37 Score=23.27 Aligned_cols=40 Identities=20% Similarity=0.501 Sum_probs=26.5
Q ss_pred CCcccccCceeecceeEEeeCceeccccc--------cccccCCccCC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF--------KCARCQSQLTC 134 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF--------rC~~C~k~L~s 134 (271)
...|..|.+.+...-.+..-|..||..|+ +|-.|+..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 46799998876322122246788888887 57777776654
No 116
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.19 E-value=68 Score=23.74 Aligned_cols=41 Identities=29% Similarity=0.582 Sum_probs=25.9
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccCCCC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPD 152 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~ 152 (271)
..+|..|++.|.+. =|+| .|+..+-+.-.+. ..--|.-.|.
T Consensus 25 ~~RC~~C~kkvgL~-------------~f~C-rCg~~FCs~HRy~---e~H~C~fDyk 65 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT-------------GFKC-RCGSTFCGTHRYP---ESHECQFDFK 65 (74)
T ss_dssp CCBCSSSCCBCTTT-------------CEEC-TTSCEECTTTCST---TTSCCCSCTT
T ss_pred CccchhhcCccccc-------------ceEe-ccCCEeccccCCC---cCCCCcCchh
Confidence 47899999887432 1888 6887776643332 1234665565
No 117
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=29.89 E-value=27 Score=26.71 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=34.9
Q ss_pred CCcccccCceeecceeEEeeCceeccccccccccCCccCCcCeeecCCCeeeccC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEV 149 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~ 149 (271)
.-+|..|.+.+...-.+..-...-|+=||.|..=. +... ...++.||.+
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s--Ik~q----~~~~EvyCPS 63 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES--IKAQ----GATGEVYCPS 63 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH--HHHH----HSSSCCCCTT
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHH--HHhc----CCCCcEECCC
Confidence 36799999999777788888889999999997532 1111 1246678843
No 118
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=29.13 E-value=1.4e+02 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.544 Sum_probs=20.0
Q ss_pred CCcccccCceeecceeEEee--Cceecccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFN--ARLFHRTCFK 124 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~--gk~wH~~CFr 124 (271)
...|..|++.-.+.+.|.-. ++.||..|..
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~ 38 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD 38 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTT
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhC
Confidence 46799998764333334433 5899999875
No 119
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.24 E-value=98 Score=20.75 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=17.5
Q ss_pred CCcccccCceeecceeEEeeCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF 123 (271)
...|..|...+. .-.+..-|..||..|+
T Consensus 20 ~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci 47 (73)
T 2ysl_A 20 EVICPICLDILQ-KPVTIDCGHNFCLKCI 47 (73)
T ss_dssp CCBCTTTCSBCS-SEEECTTCCEEEHHHH
T ss_pred CCEeccCCcccC-CeEEcCCCChhhHHHH
Confidence 467999988763 2223344667777665
No 120
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=26.94 E-value=86 Score=21.54 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=18.2
Q ss_pred CCcccccCceeecceeEEe-eCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAF-NARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a-~gk~wH~~CF 123 (271)
...|..|...+. .-.+.. -|..||..|+
T Consensus 15 ~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci 43 (74)
T 2yur_A 15 ELLCLICKDIMT-DAVVIPCCGNSYCDECI 43 (74)
T ss_dssp GGSCSSSCCCCT-TCEECSSSCCEECTTHH
T ss_pred CCCCcCCChHHh-CCeEcCCCCCHHHHHHH
Confidence 467999988763 222333 4788888885
No 121
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.09 E-value=29 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=20.0
Q ss_pred CCcccccCceeecceeEEeeCceecccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCFK 124 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CFr 124 (271)
...|..|...... .+..-+..||..|+.
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~ 42 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCID 42 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHHH
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHHH
Confidence 4679999887643 445567888888864
No 122
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.43 E-value=75 Score=22.11 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=27.2
Q ss_pred CCcccccCceeecceeEEeeCceeccccc--------cccccCCccC
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF--------KCARCQSQLT 133 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF--------rC~~C~k~L~ 133 (271)
...|..|...+. .-.+..-|..||..|+ .|..|+..+.
T Consensus 15 ~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQ-NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCC-SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhc-CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 357999988773 2234445888999997 4888888775
No 123
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.26 E-value=1e+02 Score=20.97 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=17.2
Q ss_pred CCcccccCceeecceeEEeeCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF 123 (271)
...|..|...+.. ..+..-+..||..|+
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci 46 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVSADCNHSFCRACI 46 (85)
T ss_dssp TTSCTTTCSCCSS-CEECTTSCCBCHHHH
T ss_pred CCCCcCCChhhCc-ceeCCCCCHHHHHHH
Confidence 4679999887632 223334666666665
No 124
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=23.75 E-value=1.7e+02 Score=20.80 Aligned_cols=44 Identities=27% Similarity=0.650 Sum_probs=29.5
Q ss_pred CcccccCceeecceeEEeeC-----ceeccccccccccCCccCCcCeeecCCCeeeccCCCCC
Q psy11691 96 NSCSLCGEKVYLAQRFAFNA-----RLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDE 153 (271)
Q Consensus 96 ~kCa~Cgk~V~~~ErI~a~g-----k~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~ 153 (271)
..| .|++.- .++.|..++ .-||..|.. |... ..+.+||..|-..
T Consensus 17 ~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg-------l~~~-----p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 17 TYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK-----PRGKWFCPRCSQE 65 (71)
T ss_dssp CCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT-------CSSC-----CSSCCCCTTTSSC
T ss_pred CEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC-------cCcC-----CCCCEECCCCCcc
Confidence 568 698865 366666665 468988874 4332 2478999999764
No 125
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=23.33 E-value=1.9e+02 Score=21.94 Aligned_cols=9 Identities=22% Similarity=0.504 Sum_probs=5.8
Q ss_pred Cceeccccc
Q psy11691 115 ARLFHRTCF 123 (271)
Q Consensus 115 gk~wH~~CF 123 (271)
++.||..|+
T Consensus 33 ~~~~H~~Cl 41 (112)
T 3v43_A 33 GNSGHPSCL 41 (112)
T ss_dssp CCEECHHHH
T ss_pred CCCCCCchh
Confidence 456777665
No 126
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.60 E-value=53 Score=21.97 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=16.9
Q ss_pred CCcccccCceeecceeEEeeCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF 123 (271)
...|..|...+... .+..-|..||..|+
T Consensus 15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci 42 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQTECGHRFCESCM 42 (66)
T ss_dssp CEECTTTCCEESSC-CCCSSSCCCCHHHH
T ss_pred CCCCCCCChHhcCe-eECCCCCHHHHHHH
Confidence 35699998776322 22344666776665
No 127
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.11 E-value=45 Score=24.11 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=19.4
Q ss_pred CCCcccccCceeecceeE---EeeCceec
Q psy11691 94 KLNSCSLCGEKVYLAQRF---AFNARLFH 119 (271)
Q Consensus 94 ~s~kCa~Cgk~V~~~ErI---~a~gk~wH 119 (271)
....|..|+..||++..+ ..+|+.++
T Consensus 3 ~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 3 RWNVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CCCBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred ceeEecCcCCcccCCCCeEEEecCCcEEE
Confidence 357899999999998853 34566665
No 128
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.03 E-value=1.3e+02 Score=20.52 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=16.6
Q ss_pred CCcccccCceeecceeEEeeCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAFNARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a~gk~wH~~CF 123 (271)
...|..|...+.. -.+..-|..||..|+
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci 46 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQACL 46 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTTHH
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHHHH
Confidence 4679999887632 222334566666665
No 129
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=21.92 E-value=29 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.446 Sum_probs=26.3
Q ss_pred CcccccCceeecceeEE-eeCceeccccc--------cccccCCccCC
Q psy11691 96 NSCSLCGEKVYLAQRFA-FNARLFHRTCF--------KCARCQSQLTC 134 (271)
Q Consensus 96 ~kCa~Cgk~V~~~ErI~-a~gk~wH~~CF--------rC~~C~k~L~s 134 (271)
..|..|...+.. -.+. .-|..||..|+ .|..|+..+..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 569999887632 2222 36888888886 57777777765
No 130
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.52 E-value=22 Score=23.18 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=19.6
Q ss_pred CcccccCceeecceeEEeeCceeccccccccccCCccCCc
Q psy11691 96 NSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCI 135 (271)
Q Consensus 96 ~kCa~Cgk~V~~~ErI~a~gk~wH~~CFrC~~C~k~L~s~ 135 (271)
-.|..|++.......+.. ..=|.|..|++.+...
T Consensus 19 ~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp EECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCC
T ss_pred eeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCH
Confidence 458888877633222222 3447777777666543
No 131
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.27 E-value=1.6e+02 Score=21.10 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=19.3
Q ss_pred CCcccccCceeecceeEEe-e-----Cceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQRFAF-N-----ARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~ErI~a-~-----gk~wH~~CF 123 (271)
...|..|......++.+.. - .+.||..|+
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl 49 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACL 49 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHH
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHH
Confidence 4679999876544444432 1 378999997
No 132
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.91 E-value=1.4e+02 Score=20.69 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=19.3
Q ss_pred CCcccccCceeecce---eEEeeCceeccccc
Q psy11691 95 LNSCSLCGEKVYLAQ---RFAFNARLFHRTCF 123 (271)
Q Consensus 95 s~kCa~Cgk~V~~~E---rI~a~gk~wH~~CF 123 (271)
...|..|...+...+ .+..-|..||..|+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci 46 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCL 46 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHH
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHH
Confidence 467999998875433 22335778888885
No 133
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=20.27 E-value=82 Score=22.21 Aligned_cols=45 Identities=22% Similarity=0.539 Sum_probs=29.3
Q ss_pred CcccccCceeecceeEEee--CceeccccccccccCCccCCcCeeecCCCeeeccCCCCC
Q psy11691 96 NSCSLCGEKVYLAQRFAFN--ARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDE 153 (271)
Q Consensus 96 ~kCa~Cgk~V~~~ErI~a~--gk~wH~~CFrC~~C~k~L~s~~f~~~~dG~~yCk~CY~~ 153 (271)
..|..|++. ++.|.-+ .+.||..|.. -.|.. ..++.+||..|-..
T Consensus 13 ~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~-----P~l~~-----~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG---TDVLRCTHCAAAFHWRCHF-----PAGTS-----RPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC---TTCEECSSSCCEECHHHHC-----TTTCC-----CCSSSCCCTTTTTC
T ss_pred CCcCCCCCC---CeEEECCCCCCceecccCC-----CccCc-----CCCCCEECccccCC
Confidence 569999853 4445433 5889998863 23322 23578999999764
Done!