RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11691
(271 letters)
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 60.2 bits (146), Expect = 3e-12
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C + VY +R N ++FH +CF+C+ C ++L+ Y + G+ C+
Sbjct: 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGT-YASLHGRIYCKPH 69
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 58.8 bits (142), Expect = 8e-12
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 77 GAPRAPSQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCIN 136
G+ + Q G L C+LCGE +Y+ +R N FHR+CF+C C++ L
Sbjct: 1 GSSGSSGQHQEAGAGDL----CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGG 56
Query: 137 -AYETHTGQFCCEVC 150
G F C
Sbjct: 57 YEQHPGDGHFYCLQH 71
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 55.9 bits (135), Expect = 1e-10
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQ-FCCEVCPDE 153
C C + VY A++ + + +H+ C KC RC LT + H G+ FC + C
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGG-HAEHDGKPFCHKPCYAT 67
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 55.4 bits (134), Expect = 1e-10
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C ++VY A+R + +HR C KC +C LT E +C C
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPC 55
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 54.7 bits (132), Expect = 2e-10
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 96 NSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
N C CG VY A+ + R FHR CF C C+ L H + C+ C
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTT-VAIHDAEVYCKSC 61
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 53.5 bits (128), Expect = 6e-09
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C +C + VY A+ FH++CF C C+ L H + C+ C
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAV-HGDEIYCKSC 61
Score = 50.4 bits (120), Expect = 7e-08
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 63 DVPQKTTSPAHREPGAPRAPSQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTC 122
D + + C CG+ VY A++ + +H++C
Sbjct: 83 DKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSC 142
Query: 123 FKCARCQSQLTCINAYETHTGQFCCEVC 150
F+CA+C L + G+ C+ C
Sbjct: 143 FRCAKCGKSLESTTLAD-KDGEIYCKGC 169
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 47.0 bits (112), Expect = 1e-07
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 98 CSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C A++ N+ L+H CF CA+C Q YE G+ CE
Sbjct: 14 CERCKGGFAPAEK-IVNSNGELYHEQCFVCAQCFQQFPEGLFYE-FEGRKYCEHD 66
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 46.6 bits (111), Expect = 2e-07
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 98 CSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C A++ N+ L+H CF CA+C Q YE G+ CE
Sbjct: 14 CERCKGGFAPAEK-IVNSNGELYHEQCFVCAQCFQQFPEGLFYE-FEGRKYCEHD 66
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 44.3 bits (105), Expect = 1e-06
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 91 GSLKLNSCSLCGEKVYLAQRF-AFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEV 149
GS + CS CGE V R + + +H CF C+ C+ L + G C
Sbjct: 1 GSSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP-DKGAHYCVP 59
Query: 150 C 150
C
Sbjct: 60 C 60
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 45.4 bits (107), Expect = 1e-06
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 98 CSLCGEKVYLAQRFAFNAR--LFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEE 155
C+ C +++ A + ++H CFKCA CQ + + Y CE E
Sbjct: 11 CASCDKRIR-AYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69
Query: 156 RSLTDPLRSSDRPDGHHAIGDDRYHAELNSDKSTNLLT 193
+ S +G+ D+ L+T
Sbjct: 70 KINGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERLIT 107
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 45.1 bits (106), Expect = 2e-06
Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 6/97 (6%)
Query: 60 PGVDVPQKTTSPAHREP-----GAPRAPSQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFN 114
PG D+ Q + G L C+ CG K+
Sbjct: 21 PGADLSQYKMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAM 80
Query: 115 ARLFHRTCFKCARCQSQLTCINA-YETHTGQFCCEVC 150
+H C KC+ CQ+QL I T +G C
Sbjct: 81 DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRND 117
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 41.7 bits (98), Expect = 2e-05
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 76 PGAPRAP-SQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTC 134
RAP ++ + ++ C CG + A A + + H CF CA C L
Sbjct: 5 SSGVRAPVTKVHGGAGSAQRMPLCDKCGSGIVGAVVKARD-KYRHPECFVCADCNLNLKQ 63
Query: 135 INAYETHTGQFCCEVC 150
+ G+ CE
Sbjct: 64 KGYFF-VEGELYCETH 78
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 41.2 bits (97), Expect = 2e-05
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 98 CSLCGEKVYLAQRF-AFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C + + + + ++H+ CF C+ C+ + + + F C C
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP-KGEDFYCVTC 70
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 40.8 bits (96), Expect = 2e-05
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 91 GSLKLNSCSLCGEKVYLAQRF-AFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEV 149
GS + C C + + R + +H TCF C RCQ + + Q C
Sbjct: 1 GSSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP-KDNQNFCVP 59
Query: 150 C 150
C
Sbjct: 60 C 60
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 40.5 bits (95), Expect = 3e-05
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 83 SQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHT 142
S ++ + KL C CG + + R H C+ C C + L +
Sbjct: 3 SGSSGSIGNAQKLPMCDKCGTGI-VGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFF-VE 60
Query: 143 GQFCCEVC 150
Q CE
Sbjct: 61 DQIYCEKH 68
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 40.2 bits (94), Expect = 4e-05
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 96 NSCSLCGEKVYLAQRF-AFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
N+C+ C + + R + R FH CF+C RCQ L + + C C
Sbjct: 16 NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLAD-EPFTCQDSELLCNDC 70
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 39.8 bits (93), Expect = 4e-05
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 91 GSLKLNSCSLCGEKV---YLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCC 147
GS + C C + + A+ F +H CF C +C L + T + C
Sbjct: 1 GSSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVG-KGFLTQNKEIFC 59
Query: 148 EVCPDEEERSLTDP 161
+ C + ++ P
Sbjct: 60 QKCGSGMDTDISGP 73
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 39.7 bits (93), Expect = 6e-05
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 78 APRAPSQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCI 135
S P + G + C+ C E++ + A + +H +CFKC C LT
Sbjct: 1 GSSGSSGKPIKIRG---PSHCAGCKEEIK--HGQSLLALDKQWHVSCFKCQTCSVILT-- 53
Query: 136 NAYETHTGQFCCEVC 150
Y + G CE
Sbjct: 54 GEYISKDGVPYCESD 68
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 39.3 bits (92), Expect = 8e-05
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 91 GSLKLNSCSLCGEKVYLAQRF--AFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCE 148
GS + C CGE V A + R+FH CF C+ C++QL + Y + CE
Sbjct: 1 GSSGSSGCGGCGEDVVGDGAGVVALD-RVFHVGCFVCSTCRAQLRGQHFYA-VERRAYCE 58
Query: 149 VC 150
C
Sbjct: 59 GC 60
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 38.6 bits (90), Expect = 2e-04
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C + + A + +H CF CA C+ + + + C+ C
Sbjct: 18 CFSCDQFIEGEVVSALG-KTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKC 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 45/150 (30%)
Query: 10 HKHYQRSYLGGAVVNA----LDFGSGVAAARYLF-HSIDLGDQLTNSNT--DN------P 56
++ Y +G + + + A +F +++ + L N + D P
Sbjct: 177 YQTY-HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 57 LSLPGVDVPQKTTSPAH-----REPGAPRAPSQPPSTLPGSLK--LNSCSLCGEKVYLA- 108
+S P + V Q AH + G PG L+ L + + + A
Sbjct: 236 ISCPLIGVIQL----AHYVVTAKLLGFT----------PGELRSYLKGATGHSQGLVTAV 281
Query: 109 --------QRFAFNARLFHRTCFKC-ARCQ 129
+ F + R F RC
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Score = 30.0 bits (67), Expect = 1.0
Identities = 25/208 (12%), Positives = 53/208 (25%), Gaps = 63/208 (30%)
Query: 34 AARYLFHSIDLGDQLTNSNTDNPLS----------LPGVDV---------PQKTTSPAHR 74
++L + L + D L+ L G D+ TT +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 75 EP-----GAPRAPSQPPSTLPGSLKLNSCSLCGE-KVYLAQRFAFNARLF-----HRTCF 123
E A +P S + G ++ +F F
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVA---------IFGGQGNTDDYF 170
Query: 124 KCARCQSQLTCI-NAYETHTGQFCCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDRYHAE 182
+ +L + Y G +L++ +R++ + G +
Sbjct: 171 E------ELRDLYQTYHVLVGDLI-----KFSAETLSELIRTTLDAEKVFTQGLN-ILEW 218
Query: 183 LNSDKSTNLLTDSEPSTHCDSNLVTASV 210
L + + P L++ +
Sbjct: 219 LEN-------PSNTPD---KDYLLSIPI 236
Score = 28.1 bits (62), Expect = 3.6
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 25 ALDFGSGVAAARYLFHSIDLGDQLTNSNTD 54
LDFG G A+ LG LT+ N D
Sbjct: 501 ILDFGPGGASG--------LGV-LTHRNKD 521
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 38.2 bits (89), Expect = 4e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINAYETHTGQFCCE 148
GS + C C + + A + R +H TCF+CA+C L + + C
Sbjct: 1 GSSGSSGCVECRKPI-GADSKEVHYKNRFWHDTCFRCAKCLHPLAN-ETFVAKDNKILCN 58
Query: 149 VC 150
C
Sbjct: 59 KC 60
Score = 28.9 bits (65), Expect = 0.52
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 98 CSLCGEKVYLAQRF--AFNARLFHRTCFKCARC 128
C C + + + ++H+ CF
Sbjct: 69 CKGCFKAIVAGDQNVEYKG-TVWHKDCFSGPSS 100
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 38.4 bits (89), Expect = 4e-04
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINA-YETHTGQFCC 147
GSL C+ CG K+ RF A +H C KC+ CQ+QL I T +G C
Sbjct: 1 GSLSWKRCAGCGGKIA--DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 58
Query: 148 EVC 150
Sbjct: 59 RND 61
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 36.9 bits (86), Expect = 4e-04
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
GS+ + C C + A + +H F CA+C+ YE G CE
Sbjct: 1 GSMGVPICGACRRPIEGRVVNAMG-KQWHVEHFVCAKCEKPFLGHRHYE-RKGLAYCETH 58
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 39.2 bits (91), Expect = 5e-04
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINA-YETHTGQFCC 147
GSL C+ CG K+ A RF A +H C KC+ CQ+QL I T +G C
Sbjct: 1 GSLSWKRCAGCGGKI--ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 58
Query: 148 EVC 150
Sbjct: 59 RND 61
Score = 33.8 bits (77), Expect = 0.031
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 98 CSLCGEKVYLAQRFAFNAR--LFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
CS CG+ + A A+ ++H CF C+ C+++L + + G CE
Sbjct: 72 CSACGQSIP-ASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 125
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 39.1 bits (91), Expect = 5e-04
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 67 KTTSPAHREPGAPRAPSQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNA--RLFHRTCFK 124
+ T S G+ ++ C+ C + + RF A R +H C K
Sbjct: 32 ENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHI--LDRFILKALDRHWHSKCLK 89
Query: 125 CARCQSQLTCINAYETHTGQFCCEVC 150
C+ C L + C+
Sbjct: 90 CSDCHVPLA--ERCFSRGESVYCKDD 113
Score = 34.1 bits (78), Expect = 0.023
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 98 CSLCGEKVYLAQRF--AFNARLFHRTCFKCARCQSQLTCINA-YETHTGQFCCEVC 150
C+ C + Q A + ++H CF C C+ QL + Y + C+
Sbjct: 122 CAACQLGIPPTQVVRRAQD-FVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 176
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 36.6 bits (85), Expect = 7e-04
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
GS + C C + + + + +H+ CF C C+ QL+ + C C
Sbjct: 1 GSSGSSGCVQCKKPI-TTGGVTYREQPWHKECFVCTACRKQLSG-QRFTARDDFAYCLNC 58
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 36.2 bits (84), Expect = 9e-04
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
GS + C C + + + + + +H CF C C +L + Q+ C C
Sbjct: 1 GSSGSSGCVKCNKAI-TSGGITYQDQPWHADCFVCVTCSKKLAG-QRFTAVEDQYYCVDC 58
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 36.0 bits (83), Expect = 0.001
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 91 GSLKLNSCSLCGEKV---YLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCC 147
GS + C+ C + + +F R +H CF C +C L + T C
Sbjct: 1 GSSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVG-RGFLTERDDILC 59
Query: 148 EVC 150
C
Sbjct: 60 PDC 62
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 36.6 bits (84), Expect = 0.002
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 95 LNSCSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINA-YETHTGQFCCEVC 150
L +C C + + R+ A + +H C C C +L + G+ C
Sbjct: 3 LLTCGGCQQNIG--DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 59
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 35.5 bits (82), Expect = 0.002
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
GS + C CGE + A N +H CF+C CQ L I + + G+ C C
Sbjct: 1 GSSGSSGCHQCGEFIIGRVIKAMN-NSWHPECFRCDLCQEVLADIGFVK-NAGRHLCRPC 58
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 36.3 bits (84), Expect = 0.002
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 96 NSCSLCGEKVYLAQRF--AFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C+ C +++ + + +++H CFKCA CQ + Y CE
Sbjct: 67 GLCASCDKRIRAYEMTMRVKD-KVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 122
Score = 36.3 bits (84), Expect = 0.002
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 95 LNSCSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINA-YETHTGQFCCEVC 150
L +C C + + R+ A + +H C C C +L + G+ C
Sbjct: 2 LLTCGGCQQNIG--DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 58
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 35.1 bits (81), Expect = 0.002
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAY-ETHTGQFCCEVC 150
C C + A + +H CF C C+ + +AY C C
Sbjct: 18 CHGCSLLMTGPFMVAGEFK-YHPECFACMSCKVIIEDGDAYALVQHATLYCGKC 70
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 35.0 bits (81), Expect = 0.002
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C+ C + + L + + +H CF C C L I T Q C
Sbjct: 18 CATCSQPI-LDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIED 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 41/291 (14%), Positives = 80/291 (27%), Gaps = 69/291 (23%)
Query: 3 VRPRPRH---HKHYQRSYL------GGAVVNALDFGSGVAAARYLFHSIDLG--DQLTNS 51
++ R K Y+ L NA + + L + D L+ +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTTRFKQVTDFLSAA 284
Query: 52 NTDNPLSLPGVDVPQKTTSPAHREPGAPRAPSQPPSTLPGSLKLNS---CSLCGEKVYLA 108
T + + T + + P LP + + S+ E +
Sbjct: 285 TTTH---ISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAES--IR 338
Query: 109 QRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLTDPLRSSDRP 168
A H C K + +N E P E R + D L
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIE--SSLNVLE-----------PAEY-RKMFDRL------ 378
Query: 169 DGHHAIGDDRYHAELNSDKSTNLLTD--SEPSTHCDSNLVTASVESTNMERNMDND---- 222
++ ++ T LL+ + +V + + +E+
Sbjct: 379 ----SVFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 223 -DLNILNKCTTDDDK------VNSVQNSIRFFDNPAPTKPKPDMKQYNAIM 266
+ + K +++ V+ N + FD+ P D Y+ I
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 27.1 bits (59), Expect = 8.9
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 203 SNLVTASVESTNMERNMDNDDLNI----LNKCTTDDDKVNSVQNSIRFFDNPAPTKPKPD 258
+ + S ++ MD I L C + + + +Q + D ++
Sbjct: 164 TWVALDVCLSYKVQCKMDF---KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 35.1 bits (81), Expect = 0.003
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 116 RLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
+ +H F CA C++ + I E G CE+C
Sbjct: 45 KSWHPEEFNCAHCKNTMAYIGFVE-EKGALYCELC 78
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 35.0 bits (81), Expect = 0.003
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C V A + ++H CF C C + + + +E G+ CE+
Sbjct: 18 CGGCNRPVLENYLSAMD-TVWHPECFVCGDCFTSFSTGSFFE-LDGRPFCELH 68
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 34.0 bits (78), Expect = 0.006
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 98 CSLCGEKVYLAQRFA----FNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C+ C + + + + + +H CF C +C L + H Q C C
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLAN-KRFVFHQEQVYCPDC 73
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 35.1 bits (81), Expect = 0.006
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 98 CSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C+ C E ++ A + +H F C C S L Y + C+ C
Sbjct: 6 CAGCDELIF--SNEYTQAENQNWHLKHFCCFDCDSILAG-EIYVMVNDKPVCKPC 57
Score = 28.9 bits (65), Expect = 0.71
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 98 CSLCGEKVYLAQRFA-FNARLFHRT--CFKCARCQSQLTCINAYETHTGQFCCEVC 150
C C + + +N +H + CF C+ C L + G C V
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIG-QKFMPVEGMVFCSVE 120
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 33.2 bits (75), Expect = 0.012
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 1/71 (1%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
GS + C C + + A +H +C C RC C
Sbjct: 1 GSSGSSGCDSCEKYITGRVLEAGEKH-YHPSCALCVRCGQMFAEGEEMYLQGSSIWHPAC 59
Query: 151 PDEEERSLTDP 161
+ P
Sbjct: 60 RQAARTEDSGP 70
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 34.4 bits (79), Expect = 0.015
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 92 SLKLNSCSLCGEKVYLAQRFAFNA--RLFHRTCFKCARCQSQLTCINAYETHTGQFCCEV 149
+ ++ C+ C + + RF A R +H C KC+ C L + C+
Sbjct: 3 TPEIPMCAGCDQHI--LDRFILKALDRHWHSKCLKCSDCHVPLA--ERCFSRGESVYCKD 58
Query: 150 C 150
Sbjct: 59 D 59
Score = 34.4 bits (79), Expect = 0.017
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 96 NSCSLCGEKVYLAQRF--AFNARLFHRTCFKCARCQSQLTCINA-YETHTGQFCCEVCPD 152
C+ C + Q A + ++H CF C C+ QL + Y + C+ +
Sbjct: 66 TKCAACQLGIPPTQVVRRAQD-FVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124
Query: 153 EEERSLTDPLRSSDRPDGHHAI--GDDRYHAE 182
++ + S G + H
Sbjct: 125 TAKQGGSG---GSGGSGGGTPMVAASPERHDG 153
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 32.8 bits (75), Expect = 0.017
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDE 153
C C + Q F +H F CA C +LT G+ C C D+
Sbjct: 18 CQKCH-AIIDEQPLIFKNDPYHPDHFNCANCGKELT--ADARELKGELYCLPCHDK 70
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 32.3 bits (74), Expect = 0.027
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 98 CSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVC 150
C+ C + + + + +HR C C CQ+ L + + C C
Sbjct: 18 CARCSKTL-TQGGVTYRDQPWHRECLVCTGCQTPLAG-QQFTSRDEDPYCVAC 68
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 31.8 bits (72), Expect = 0.032
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 96 NSCSLCGEKVYL-AQRFAFNARLFHRT--CFKCARCQSQL 132
C C + QR +N +H + CF C+ C L
Sbjct: 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL 42
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 27.9 bits (62), Expect = 0.59
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 119 HRTCFKCARCQSQLTCINA---YETHTGQFCCEVC 150
+R FKC C S T + A ++ TG F C C
Sbjct: 11 NRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFC 45
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 26.9 bits (59), Expect = 0.80
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 97 SCSLCGEKVYLAQRFAFNARLFHRTCF 123
+C+ CG+ VY ++ + +H+ CF
Sbjct: 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 0.98
Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 1/27 (3%)
Query: 124 KCARCQSQLTCINAYETHTGQFCCEVC 150
C C+ I G C +C
Sbjct: 23 TCPECKVYPPKI-VERFSEGDVVCALC 48
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.44.1.3
Length = 93
Score = 26.7 bits (58), Expect = 2.9
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 81 APSQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYET 140
S + + C++C E++ + H+ CF C+R I A
Sbjct: 1 GSSGSSGSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR-----ESIKAQGA 55
Query: 141 HTGQFC--CEVCP 151
+C E CP
Sbjct: 56 TGEVYCPSGEKCP 68
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 74
Score = 26.4 bits (58), Expect = 3.1
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 19/61 (31%)
Query: 68 TTSPAHREPGAPRAPSQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCAR 127
+ S R + AP PP + C C +KV + T FKC R
Sbjct: 3 SGSSGTRGGDSAAAPLDPPKSTA-----TRCLSCNKKVGV-------------TGFKC-R 43
Query: 128 C 128
C
Sbjct: 44 C 44
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase;
non-mevalonate pathway, GHMP superfamily; 1.70A
{Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Length = 275
Score = 27.9 bits (63), Expect = 3.3
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 38 LFHSIDLGDQLTNSNTDNPLSLPGVD 63
LF L D+L + L G
Sbjct: 29 LFAPFSLADRLVVEPVSSGLHFQGPY 54
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 27.5 bits (60), Expect = 4.1
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 17/94 (18%)
Query: 98 CSLCGEKVYLAQ--RFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQF---------- 145
C++C +A+ T C C+ + + T +
Sbjct: 78 CNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSV 137
Query: 146 -CCEVCPDEEERSLTDPLRSSDRPDGHHAIGDDR 178
C +C +T L D +H G R
Sbjct: 138 FTCPICEKRSIVGVTANLVH----DHNHDTGWGR 167
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 27.8 bits (62), Expect = 4.7
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 122 CFKCARCQSQLTCINAYETHTGQFCCEVCPDEE 154
C+ C C+ YE +F C C +
Sbjct: 504 CWICIPCEP-------YEYLVDEFTCMDCGPGQ 529
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.80.1.1
Length = 85
Score = 25.7 bits (56), Expect = 6.4
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 75 EPGAPRAPSQPPSTLPGSLKLNSCSLCGEKVYLAQRF 111
G P + C LCG+K LA F
Sbjct: 5 SSGIHHLPPVKAPLQTKKKIMKHCFLCGKKTGLATSF 41
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics,
structural genomics consor SGC, fatty acid metabolism,
hydrolase; HET: COA; 2.70A {Homo sapiens}
Length = 333
Score = 27.0 bits (60), Expect = 6.7
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 200 HCDSNLVTASVESTNMERNMDNDDL 224
H + VTASV+ E +
Sbjct: 63 HAGVSCVTASVDDIQFEETARVGQV 87
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 26.8 bits (58), Expect = 7.8
Identities = 10/71 (14%), Positives = 18/71 (25%)
Query: 96 NSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEE 155
+ C L + + R R + C +C+ C P
Sbjct: 118 DECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVP 177
Query: 156 RSLTDPLRSSD 166
S L ++
Sbjct: 178 SSPGQELCGNN 188
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 26.6 bits (59), Expect = 9.0
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 91 GSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCFKCARCQSQL 132
GS C CG+ + A + KC C +
Sbjct: 132 GSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV 173
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 26.7 bits (58), Expect = 9.9
Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 119 HRTCFKCARCQSQLTCINAYETHTGQFCCEVCPDEEERSLTDPLRSSDRPDGHH 172
RTC C + C G F C C E P R S + G
Sbjct: 38 GRTCQDVNECAEEGYCSQGCTNSEGAFQC-WCEAGYEL---RPDRRSCKALGPE 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.404
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,021,244
Number of extensions: 219204
Number of successful extensions: 640
Number of sequences better than 10.0: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 92
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)