RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11691
         (271 letters)



>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 35

 Score = 38.2 bits (89), Expect = 2e-05
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 98  CSLCGEKVYLAQRFAFNARLFHRTCF 123
           C  C + VY  +R   N ++FH +CF
Sbjct: 10  CVECQKTVYPMERLLANQQVFHISCF 35


>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
           CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 43

 Score = 38.3 bits (89), Expect = 3e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 82  PSQPPSTLPGSLKLNSCSLCGEKVYLAQRFAFNARLFHRTCF 123
            S+    + GS     C  CG+ VY A++     + +H++CF
Sbjct: 5   ASRMAQKVGGSDG---CPRCGQAVYAAEKVIGAGKSWHKSCF 43


>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
           homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 36

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 98  CSLCGEKVYLAQRFAFNARLFHRTCF 123
           C+LCGE +Y+ +R   N   FHR+CF
Sbjct: 11  CALCGEHLYVLERLCVNGHFFHRSCF 36


>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP,
           CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 35

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 96  NSCSLCGEKVYLAQRFAFNARLFHRTCF 123
             C +C + VY A+        FH++CF
Sbjct: 8   KKCGVCQKAVYFAEEVQCEGSSFHKSCF 35


>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP,
           CRIP {Japanese quail (Coturnix coturnix japonica), CRP2
           [TaxId: 93934]}
          Length = 28

 Score = 33.0 bits (75), Expect = 0.002
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 96  NSCSLCGEKVYLAQRFAFNARLFHRTCF 123
           N C  CG  VY A+    + R FHR CF
Sbjct: 1   NKCGACGRTVYHAEEVQCDGRSFHRCCF 28


>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 27.4 bits (61), Expect = 0.34
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 119 HRTCFKCARCQSQLTCINA---YETHTGQFCCEVC 150
           +R  FKC  C S  T + A   ++  TG F C  C
Sbjct: 11  NRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFC 45


>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 67

 Score = 26.9 bits (59), Expect = 0.57
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 13/70 (18%)

Query: 96  NSCSLCGEKVYLAQRFAFNARLFHRTCFKCAR-----CQSQLTCINAYETHTGQFCCEVC 150
           ++C +C +K        F+       C  C         S    +     +     C+ C
Sbjct: 6   DACMICSKK--------FSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSC 57

Query: 151 PDEEERSLTD 160
            ++ E  +TD
Sbjct: 58  FEDYEFIVTD 67


>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP,
           CRIP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 25.5 bits (56), Expect = 0.90
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 98  CSLCGEKVYLAQRFAFNARLFHRTC 122
           C  C + VY A++ +   + +H+ C
Sbjct: 5   CPKCDKTVYFAEKVSSLGKDWHKFC 29


>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein,
           CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
           CRP2 [TaxId: 93934]}
          Length = 28

 Score = 24.9 bits (54), Expect = 1.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 96  NSCSLCGEKVYLAQRFAFNARLFHRTC 122
             CS CG+ VY A++     + +H+ C
Sbjct: 2   EKCSRCGDSVYAAEKVIGAGKPWHKNC 28


>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 30

 Score = 24.5 bits (53), Expect = 2.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 97  SCSLCGEKVYLAQRFAFNARLFHRTCF 123
           +C+ CG+ VY  ++     + +H+ CF
Sbjct: 4   NCARCGKIVYPTEKVNCLDKFWHKACF 30


>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
           Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 23.1 bits (50), Expect = 6.2
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 123 FKCARCQSQLTCINAYETHTGQFCCEVC 150
           F CA+C  Q      YE   G+  CE  
Sbjct: 1   FVCAQCFQQFPEGLFYE-FEGRKYCEHD 27


>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
           protein At1g12440 {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 74

 Score = 23.7 bits (51), Expect = 9.6
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 5/38 (13%)

Query: 68  TTSPAHREPGAPRAPSQPPSTLPGSLKLNSCSLCGEKV 105
           + S   R   +  AP  PP +         C  C +KV
Sbjct: 3   SGSSGTRGGDSAAAPLDPPKS-----TATRCLSCNKKV 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 974,547
Number of extensions: 42504
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 29
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)