BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11692
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTET---DI 57
+KF + +N +++S+ L +D + ++G W+II PA N+Y + P T D+
Sbjct: 146 LKFTALNYNANEISMDL-----IIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDV 200
Query: 58 TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXX 117
TFY+IIRRK LFY +N I P VLISFL L FYLPAE+GEK++
Sbjct: 201 TFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTS 260
Query: 118 XXXPPTSLVLPLIAKYLLF 136
P T+L +PLI KYL+F
Sbjct: 261 QRLPETALAVPLIGKYLMF 279
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 83/151 (54%), Gaps = 17/151 (11%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDY---W---------KSGTWDIIEVPAYLNVYD 48
+KF + +N +++S+ L D +D DY W ++G W+II PA N+Y
Sbjct: 167 LKFTALNYNANEISMDLMTDT--IDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYG 224
Query: 49 EHQPTET---DITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXX 105
+ P T D+TFY+IIRRK LFY +N I P VLISFL L FYLPAE+GEK++
Sbjct: 225 DKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICV 284
Query: 106 XXXXXXXXXXXXXXXPPTSLVLPLIAKYLLF 136
P T+L +PLI KYL+F
Sbjct: 285 LLAQAVFLLLTSQRLPETALAVPLIGKYLMF 315
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLN-VYDEHQPTET--DI 57
MK G WT++G +VS++ +D+ DLS + +SG W + + + + VY P DI
Sbjct: 168 MKLGIWTYDGTKVSISPESDRP--DLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDI 225
Query: 58 TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXX 117
T++ I++R L++ VN+I+P +L SFL VLVFYLP ++GEK+T
Sbjct: 226 TYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIV 285
Query: 118 XXXPPTSLVLPLIAKYLLFTFI 139
P TS +PLI KY+LFT I
Sbjct: 286 ELIPSTSSAVPLIGKYMLFTMI 307
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution.
pdb|2BG9|D Chain D, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLN-VYDEHQPTET--DI 57
MK G WT++G +VS++ +D+ DLS + +SG W + + + + VY P DI
Sbjct: 144 MKLGIWTYDGTKVSISPESDRP--DLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDI 201
Query: 58 TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXX 117
T++ I++R L++ VN+I+P +L SFL VLVFYLP ++GEK+T
Sbjct: 202 TYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIV 261
Query: 118 XXXPPTSLVLPLIAKYLLFTFI 139
P TS +PLI KY+LFT I
Sbjct: 262 ELIPSTSSAVPLIGKYMLFTMI 283
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFY 60
M F S+T++ +V L D ++ + ++G W I P+ N + P+ D+TFY
Sbjct: 144 MVFKSYTYDTSEVILQHALDA-MINQDAFTENGQWSIEHKPSRKN-WRSDDPSYEDVTFY 201
Query: 61 IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXXXX 120
+II+RK LFY V I+P +LIS L +LVFYLP +AGEK++
Sbjct: 202 LIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKV 261
Query: 121 PPTSLVLPLIAKYLLFTFIM 140
P TSL +P+I YL+F I+
Sbjct: 262 PETSLSVPIIISYLMFIMIL 281
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 5/145 (3%)
Query: 3 FGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETD---ITF 59
F S T+N +V+L L ++ +D D+ ++G W I PA N + + D I F
Sbjct: 145 FRSQTYNAHEVNLQLSAEEG-IDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIF 203
Query: 60 YIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTXXXXXXXXXXXXXXXXXX 118
++II+RK LFY +N+I P VLIS L VLV++LPA+A G+K T
Sbjct: 204 FLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQ 263
Query: 119 XXPPTSLVLPLIAKYLLFTFIMNTV 143
P TSL +PLI KYL+F ++ V
Sbjct: 264 KVPETSLNVPLIGKYLIFVMFVSLV 288
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Query: 1 MKFGSWTFNGDQVSLALYNDKN--------FVDLSDYWKSGTWDIIEVPAYLNVYDEHQP 52
M F S+T++ +V L D ++ + ++G W I P+ N + P
Sbjct: 168 MVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKN-WRSDDP 226
Query: 53 TETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXX 112
+ D+TFY+II+RK LFY V I+P +LIS L +LVFYLP +AGEK++
Sbjct: 227 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVF 286
Query: 113 XXXXXXXXPPTSLVLPLIAKYLLFTFIM 140
P TSL +P+I YL+F I+
Sbjct: 287 LLLLADKVPETSLSVPIIISYLMFIMIL 314
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query: 3 FGSWTFNGDQVSLALYNDKN------FVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETD 56
F S T+N +V+L L ++ +D D+ ++G W I PA N + + D
Sbjct: 145 FRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDID 204
Query: 57 ---ITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTXXXXXXXXXXXX 112
I F++II+RK LFY +N+I P VLIS L VLV++LPA+A G+K T
Sbjct: 205 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 264
Query: 113 XXXXXXXXPPTSLVLPLIAKYLLFT-FIMNTVKSACLHYFLLYELLATGNTFDMNTYQKN 171
P TSL +PLI KYL+F F+ + + C+ +L L T NT ++ K+
Sbjct: 265 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCV--IVLNVSLRTPNTHSLSEKIKH 322
>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine
Receptor B2 Subunit
Length = 164
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 64 RRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXXXXPPT 123
RRK LFYT+NLI+P VLI+ L +LVFYLP++ GEK+T PPT
Sbjct: 25 RRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPT 84
Query: 124 SLVLPLIAKYLLFTFIMNT---VKSACL 148
SL +PL+ KYL+FT ++ T V S C+
Sbjct: 85 SLDVPLVGKYLMFTMVLVTFSIVTSVCV 112
>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXXXXPPTSLVL 127
LFY +N I P VLISFL L FYLPAE+GEK++ P T+L +
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 128 PLIAKYLLF 136
PLI KYL+F
Sbjct: 62 PLIGKYLMF 70
>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr
A4 Subunit
Length = 137
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 44/77 (57%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXXXXPPTSLVL 127
LFYT+NLI+P +LIS L VLVFYLP+E GEK+T P TS V
Sbjct: 8 LFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSSVS 67
Query: 128 PLIAKYLLFTFIMNTVK 144
P I +YLLFT I T+
Sbjct: 68 PSIGEYLLFTMIFVTLS 84
>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2
Subunit
Length = 137
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 64 RRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXXXXPPT 123
+ LFYT+NLI+P VLI+ L +LVFYLP++ GEK+T PPT
Sbjct: 4 EEEPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPT 63
Query: 124 SLVLPLIAKYLLFTFIMNT---VKSACL 148
S P + +YL+FT ++ T V S C+
Sbjct: 64 SSDSPSVGEYLMFTMVLVTFSIVTSVCV 91
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron
Images
pdb|1OED|D Chain D, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 227
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXXXXPPTSLVL 127
L++ VN+I+P +L SFL LVFYLP ++GEK+T P TS +
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 128 PLIAKYLLFTFI 139
PLI KY+LFT I
Sbjct: 62 PLIGKYMLFTMI 73
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 250
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXXXXPPTSLVL 127
LFY V I+P +LIS L +LVFYLP +AGEK++ P TSL +
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 128 PLIAKYLLFTFIM 140
P+I +YL+F I+
Sbjct: 62 PIIIRYLMFIMIL 74
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTXXXXXXXXXXXXXXXXXXXXPPTSLV 126
LFY +N+I P VLIS L VLV++LPA+A G+K T P TSL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLN 61
Query: 127 LPLIAKYLLFTF------IMNTV 143
+PLI KYL+F +MN V
Sbjct: 62 VPLIGKYLIFVMFVSMLIVMNCV 84
>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The
Neuronal Acetylcholine Receptor Beta 2 Subunit
Length = 35
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 64 RRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEK 98
RRK LFYT+NLI+P VLI+ L +LVFYLP++ GEK
Sbjct: 1 RRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEK 35
>pdb|2LKG|A Chain A, Wsa Major Conformation
pdb|2LKH|A Chain A, Wsa Minor Conformation
Length = 140
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXXXXPPTSLVL 127
L++ VN+I P S L LVFYLP ++GEK+T P TS +
Sbjct: 50 LYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAV 109
Query: 128 PLIAKYLLFT--FIMNTVK 144
PLI KY+LFT F+ +++K
Sbjct: 110 PLIGKYMLFTKEFVESSIK 128
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Nicotinic Acetylcholine Receptor 1 Subunit Bound To
Alpha-Bungarotoxin At 1.9 A Resolution
Length = 212
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLN-VYDEHQPTET--DI 57
MK G+ T++G V++ +D+ DLS++ +SG W I E + + V+ PT DI
Sbjct: 145 MKLGTRTYDGSAVAINPESDQP--DLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDI 202
Query: 58 TFYIIIRR 65
T++ +++R
Sbjct: 203 TYHFVMQR 210
>pdb|2XNT|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|F Chain F, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|G Chain G, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|H Chain H, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|I Chain I, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|J Chain J, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|F Chain F, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|G Chain G, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|H Chain H, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|I Chain I, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|J Chain J, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
Length = 236
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D + VDLS Y+ S ++I+
Sbjct: 159 VKFGSWVYSGFEIDLK--TDTDQVDLSSYYASSKYEILSA 196
>pdb|2BR7|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|B Chain B, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|C Chain C, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|D Chain D, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|E Chain E, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR8|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|B Chain B, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|C Chain C, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|D Chain D, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|E Chain E, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2C9T|A Chain A, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|B Chain B, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|C Chain C, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|D Chain D, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|E Chain E, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|F Chain F, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|G Chain G, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|H Chain H, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|I Chain I, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|J Chain J, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2UZ6|A Chain A, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|B Chain B, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|C Chain C, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|D Chain D, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|E Chain E, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|F Chain F, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|G Chain G, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|H Chain H, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|I Chain I, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|J Chain J, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2W8F|A Chain A, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|B Chain B, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|C Chain C, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|D Chain D, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|E Chain E, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|F Chain F, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|G Chain G, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|H Chain H, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|I Chain I, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|J Chain J, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8G|A Chain A, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|B Chain B, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|C Chain C, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|D Chain D, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|E Chain E, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2XYS|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYT|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|F Chain F, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|G Chain G, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|H Chain H, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|I Chain I, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|J Chain J, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2Y7Y|A Chain A, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|B Chain B, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|C Chain C, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|D Chain D, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|E Chain E, Aplysia Californica Achbp In Apo State
pdb|2Y54|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y56|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y57|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y58|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|4AFO|A Chain A, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|B Chain B, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|C Chain C, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|D Chain D, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|E Chain E, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFT|A Chain A, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|B Chain B, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|C Chain C, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|D Chain D, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|E Chain E, Aplysia Californica Achbp In Complex With Varenicline
Length = 217
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 140 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 177
>pdb|3T4M|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|B Chain B, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|C Chain C, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|D Chain D, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|E Chain E, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|F Chain F, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|G Chain G, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|H Chain H, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|I Chain I, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|J Chain J, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
Length = 230
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW+++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 151 VKFGSWSYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 188
>pdb|2XZ6|A Chain A, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|B Chain B, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|C Chain C, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|D Chain D, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|E Chain E, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|F Chain F, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|G Chain G, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|H Chain H, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|I Chain I, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|J Chain J, Mtset-Modified Y53c Mutant Of Aplysia Achbp
Length = 217
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 140 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 177
>pdb|2XZ5|A Chain A, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
pdb|2XZ5|B Chain B, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
pdb|2XZ5|C Chain C, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
pdb|2XZ5|D Chain D, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
pdb|2XZ5|E Chain E, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
Length = 217
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 140 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 177
>pdb|2BYP|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
Length = 214
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D + VDLS Y+ S ++I+
Sbjct: 148 VKFGSWVYSGFEIDLK--TDTDQVDLSSYYASSKYEILSA 185
>pdb|3GUA|A Chain A, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|B Chain B, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|C Chain C, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|D Chain D, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|E Chain E, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|F Chain F, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|G Chain G, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|H Chain H, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|I Chain I, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|J Chain J, Sulfates Bound In The Vestibule Of Achbp
Length = 217
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D + VDLS Y+ S ++I+
Sbjct: 151 VKFGSWVYSGFEIDLK--TDTDQVDLSSYYASSKYEILSA 188
>pdb|2YME|A Chain A, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|B Chain B, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|C Chain C, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|D Chain D, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|E Chain E, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|F Chain F, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|G Chain G, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|H Chain H, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|I Chain I, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|J Chain J, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
Length = 205
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D + VDLS Y+ S ++I+
Sbjct: 140 VKFGSWVYSGFEIDLK--TDTDQVDLSSYYASSKYEILSA 177
>pdb|2BYN|A Chain A, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|B Chain B, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|C Chain C, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|D Chain D, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|E Chain E, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYQ|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYR|A Chain A, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|B Chain B, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|C Chain C, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|D Chain D, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|E Chain E, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|F Chain F, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|G Chain G, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|H Chain H, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|I Chain I, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|J Chain J, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYS|A Chain A, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|B Chain B, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|C Chain C, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|D Chain D, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|E Chain E, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|F Chain F, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|G Chain G, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|H Chain H, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|I Chain I, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|J Chain J, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|3C79|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C84|A Chain A, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|B Chain B, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|C Chain C, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|D Chain D, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|E Chain E, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|2WNC|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNL|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|F Chain F, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|G Chain G, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|H Chain H, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|I Chain I, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|J Chain J, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
Length = 227
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 150 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 187
>pdb|3PMZ|A Chain A, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|B Chain B, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|C Chain C, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|D Chain D, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|E Chain E, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|F Chain F, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|G Chain G, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|H Chain H, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|I Chain I, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|J Chain J, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
Length = 227
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 150 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 187
>pdb|2X00|D Chain D, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
Length = 227
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 150 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 187
>pdb|2WN9|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WNJ|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WZY|A Chain A, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|B Chain B, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|C Chain C, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|D Chain D, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|E Chain E, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|F Chain F, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|G Chain G, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|H Chain H, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|I Chain I, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|J Chain J, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2X00|A Chain A, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|B Chain B, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|C Chain C, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|E Chain E, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|3PEO|A Chain A, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|B Chain B, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|C Chain C, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|D Chain D, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|E Chain E, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|F Chain F, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|G Chain G, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|H Chain H, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|I Chain I, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|J Chain J, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
Length = 228
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 151 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 188
>pdb|2PGZ|A Chain A, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|B Chain B, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|C Chain C, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|D Chain D, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|E Chain E, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PH9|A Chain A, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|B Chain B, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|C Chain C, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|D Chain D, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|E Chain E, Galanthamine Bound To An Ach-Binding Protein
pdb|4DBM|A Chain A, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|B Chain B, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|C Chain C, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|D Chain D, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|E Chain E, Aplysia Californica-Achbp In Complex With Triazole 18
Length = 230
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+
Sbjct: 151 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSA 188
>pdb|3SIO|A Chain A, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|B Chain B, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|C Chain C, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|D Chain D, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|E Chain E, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|F Chain F, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|G Chain G, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|H Chain H, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|I Chain I, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|J Chain J, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
Length = 230
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW++ G ++ L D+ VDLS Y+ S ++I+
Sbjct: 151 VKFGSWSYGGWEIDLKTDTDQ--VDLSSYYASSKYEILSA 188
>pdb|3SH1|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|B Chain B, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|C Chain C, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|D Chain D, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|E Chain E, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|F Chain F, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|G Chain G, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|H Chain H, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|I Chain I, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|J Chain J, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
Length = 230
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+KFGSW++ G ++ L D+ VDLS Y+ S ++I+
Sbjct: 151 VKFGSWSYGGWEIDLKTDTDQ--VDLSSYYASSKYEILSA 188
>pdb|2YMD|A Chain A, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|B Chain B, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|C Chain C, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|D Chain D, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|E Chain E, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|F Chain F, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|G Chain G, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|H Chain H, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|I Chain I, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|J Chain J, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
Length = 212
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEV 40
+ FGSW ++G ++ L D + VDLS Y+ S ++I+
Sbjct: 140 LTFGSWVYSGFEIDLK--TDTDQVDLSSYYASSKYEILSA 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,641,680
Number of Sequences: 62578
Number of extensions: 164514
Number of successful extensions: 459
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 37
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)