RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11692
(171 letters)
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 179 bits (454), Expect = 5e-55
Identities = 63/146 (43%), Positives = 96/146 (65%), Gaps = 5/146 (3%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVY---DEHQPTETDI 57
MK G WT++G +VS++ +D+ DLS + +SG W + + + + DI
Sbjct: 168 MKLGIWTYDGTKVSISPESDR--PDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDI 225
Query: 58 TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVS 117
T++ I++R L++ VN+I+P +L SFL VLVFYLP ++GEK+TL IS+LLSL VFLL++
Sbjct: 226 TYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIV 285
Query: 118 KILPPTSLVLPLIAKYLLFTFIMNTV 143
+++P TS +PLI KY+LFT I
Sbjct: 286 ELIPSTSSAVPLIGKYMLFTMIFVIS 311
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 168 bits (427), Expect = 9e-52
Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVY---DEHQPTETDI 57
MK G WT++G +VS++ +D+ DLS + +SG W + + + + DI
Sbjct: 144 MKLGIWTYDGTKVSISPESDR--PDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDI 201
Query: 58 TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVS 117
T++ I++R L++ VN+I+P +L SFL VLVFYLP ++GEK+TL IS+LLSL VFLL++
Sbjct: 202 TYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIV 261
Query: 118 KILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDMNTYQKN 171
+++P TS +PLI KY+LFT I S + ++ + +T K
Sbjct: 262 ELIPSTSSAVPLIGKYMLFTMIFVIS-SIIVTVVVINTHHRSPSTHSAIEGVKY 314
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 165 bits (419), Expect = 1e-50
Identities = 68/170 (40%), Positives = 100/170 (58%), Gaps = 3/170 (1%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFY 60
M F S+T++ +V L D ++ + ++G W I P+ N + P+ D+TFY
Sbjct: 144 MVFKSYTYDTSEVILQHALDAM-INQDAFTENGQWSIEHKPSRKN-WRSDDPSYEDVTFY 201
Query: 61 IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKIL 120
+II+RK LFY V I+P +LIS L +LVFYLP +AGEK++L IS LL+L VFLLL++ +
Sbjct: 202 LIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKV 261
Query: 121 PPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDMNTYQK 170
P TSL +P+I YL+F I+ S L +L + NT + K
Sbjct: 262 PETSLSVPIIISYLMFIMILVAF-SVILSVVVLNLHHRSPNTHEAVEAIK 310
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 159 bits (403), Expect = 3e-48
Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 5/147 (3%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTE---TDI 57
+ F S T+N +V+L L ++ +D D+ ++G W I PA N + + +I
Sbjct: 143 LVFRSQTYNAHEVNLQLSAEEG-IDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEI 201
Query: 58 TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTLGISILLSLVVFLLLV 116
F++II+RK LFY +N+I P VLIS L VLV++LPA+A G+K TL IS+LL+ +FL L+
Sbjct: 202 IFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLI 261
Query: 117 SKILPPTSLVLPLIAKYLLFTFIMNTV 143
++ +P TSL +PLI KYL+F ++ V
Sbjct: 262 AQKVPETSLNVPLIGKYLIFVMFVSLV 288
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 161 bits (408), Expect = 5e-48
Identities = 62/151 (41%), Positives = 91/151 (60%), Gaps = 9/151 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNF--------VDLSDYWKSGTWDIIEVPAYLNVYDEHQP 52
M F S+T++ +V L D ++ + ++G W I P+ N + P
Sbjct: 168 MVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKN-WRSDDP 226
Query: 53 TETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVF 112
+ D+TFY+II+RK LFY V I+P +LIS L +LVFYLP +AGEK++L IS LL+L VF
Sbjct: 227 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVF 286
Query: 113 LLLVSKILPPTSLVLPLIAKYLLFTFIMNTV 143
LLL++ +P TSL +P+I YL+F I+
Sbjct: 287 LLLLADKVPETSLSVPIIISYLMFIMILVAF 317
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 157 bits (398), Expect = 2e-47
Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 9/168 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYD---EHQPTETDI 57
+KF + +N +++S+ +D + ++G W+II PA N+Y + D+
Sbjct: 146 LKFTALNYNANEISM-----DLIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDV 200
Query: 58 TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVS 117
TFY+IIRRK LFY +N I P VLISFL L FYLPAE+GEK++ I +LL+ VFLLL S
Sbjct: 201 TFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTS 260
Query: 118 KILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDM 165
+ LP T+L +PLI KYL+F + T +L T +T
Sbjct: 261 QRLPETALAVPLIGKYLMFIMSLVTG-VVVNCGIVLNFHFRTPSTHSG 307
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 159 bits (404), Expect = 3e-47
Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 13/156 (8%)
Query: 1 MKFGSWTFNGDQVSLALYND----------KNFVDLSDYWKSGTWDIIEVPAYLNVY--- 47
+KF + +N +++S+ L D +D + ++G W+II PA N+Y
Sbjct: 167 LKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDK 226
Query: 48 DEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILL 107
+ D+TFY+IIRRK LFY +N I P VLISFL L FYLPAE+GEK++ I +LL
Sbjct: 227 FPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLL 286
Query: 108 SLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTV 143
+ VFLLL S+ LP T+L +PLI KYL+F + T
Sbjct: 287 AQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTG 322
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 158 bits (400), Expect = 6e-47
Identities = 62/153 (40%), Positives = 94/153 (61%), Gaps = 10/153 (6%)
Query: 1 MKFGSWTFNGDQVSLALYND------KNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTE 54
+ F S T+N +V+L L + +D D+ ++G W I PA N + +
Sbjct: 143 LVFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDD 202
Query: 55 ---TDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTLGISILLSLV 110
+I F++II+RK LFY +N+I P VLIS L VLV++LPA+A G+K TL IS+LL+
Sbjct: 203 IDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQT 262
Query: 111 VFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTV 143
+FL L+++ +P TSL +PLI KYL+F ++ V
Sbjct: 263 IFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLV 295
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 152 bits (387), Expect = 3e-46
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 9/156 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDIT 58
+ + + + L D V +D WDI A + + E+ +
Sbjct: 132 IYLIVRSVDTRNIVL--AVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLD 189
Query: 59 FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSK 118
+ + I R+ Y N+ILP + I F+ F+ + VTL +S L++ + F +LV
Sbjct: 190 YQLRISRQYFSYIPNIILPMLFILFISWTAFWSTS-YEANVTLVVSTLIAHIAFNILVET 248
Query: 119 ILPPTSLVLPLIAKYLLFTFIMNT---VKSACLHYF 151
LP T + + ++ ++ HY
Sbjct: 249 CLPKTPYM-TYTGAIIFMIYLFYFVAVIEVTVQHYL 283
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 128 bits (324), Expect = 6e-37
Identities = 28/163 (17%), Positives = 62/163 (38%), Gaps = 16/163 (9%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPA-------YLNVYDEHQPT 53
++ +++N Q+ + + + + D + W I + Y ++
Sbjct: 128 LELEPFSYNNQQL--RFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQ 185
Query: 54 E--TDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVV 111
+ IT I R +Y + ILP LI VF+L + E++ +++L++V
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLES-FSERLQTSFTLMLTVVA 244
Query: 112 FLLLVSKILPPTSLVLPLIAKYLLFTFIMNT---VKSACLHYF 151
+ S ILP +I + ++ + + H+
Sbjct: 245 YAFYTSNILPRLPYT-TVIDQMIIAGYGSIFAAILLIIFAHHR 286
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 120 bits (303), Expect = 1e-35
Identities = 53/97 (54%), Positives = 71/97 (73%)
Query: 47 YDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISIL 106
++ F RRK LFYT+NLI+P VLI+ L +LVFYLP++ GEK+TL IS+L
Sbjct: 8 STSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVL 67
Query: 107 LSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTV 143
L+L VFLLL+SKI+PPTSL +PL+ KYL+FT ++ T
Sbjct: 68 LALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTF 104
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 115 bits (289), Expect = 1e-33
Identities = 50/81 (61%), Positives = 62/81 (76%)
Query: 63 IRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPP 122
LFYT+NLI+P +LIS L VLVFYLP+E GEK+TL IS+LLSL VFLLL+++I+P
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPS 62
Query: 123 TSLVLPLIAKYLLFTFIMNTV 143
TS V P I +YLLFT I T+
Sbjct: 63 TSSVSPSIGEYLLFTMIFVTL 83
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 108 bits (272), Expect = 3e-31
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 18 YNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKT------LFYT 71
++ + + D+ +D I +V + I + ++ L++
Sbjct: 3 HHHHHHAMVIDHILKCVFDKICKIGTESV---------EAGRLIELSQEGGGGGGPLYFV 53
Query: 72 VNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIA 131
VN+I P S L LVFYLP ++GEK+T S+L SL L + +++P TS +PLI
Sbjct: 54 VNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPLIG 113
Query: 132 KYLLFTFIMNTV 143
KY+LFT
Sbjct: 114 KYMLFTKEFVES 125
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 106 bits (266), Expect = 4e-29
Identities = 44/76 (57%), Positives = 55/76 (72%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 127
LFY +N I P VLISFL L FYLPAE+GEK++ IS+LL+ VFLLL S+ LP T+L +
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 128 PLIAKYLLFTFIMNTV 143
PLI KYL+F + T
Sbjct: 62 PLIGKYLMFIMSLVTG 77
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 104 bits (261), Expect = 2e-28
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 127
LFY V I+P +LIS L +LVFYLP +AGEK++L IS LL++ VFLLL++ +P TSL +
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 128 PLIAKYLLFTFIMNTV 143
P+I +YL+F I+
Sbjct: 62 PIIIRYLMFIMILVAF 77
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 103 bits (257), Expect = 5e-28
Identities = 42/76 (55%), Positives = 58/76 (76%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 127
L++ VN+I+P +L SFL LVFYLP ++GEK+TL IS+LLSL VFLL++ +++P TS +
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 128 PLIAKYLLFTFIMNTV 143
PLI KY+LFT I
Sbjct: 62 PLIGKYMLFTMIFVIS 77
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 104 bits (260), Expect = 2e-27
Identities = 21/156 (13%), Positives = 60/156 (38%), Gaps = 6/156 (3%)
Query: 1 MKFGSWTFNGDQVSLAL-YNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITF 59
+ S+ + + + + + ++ + + + +
Sbjct: 146 IDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRT 205
Query: 60 YIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTLGISILLSLVVFLLLVSK 118
I ++R+ FY + L +P+ ++ + + F+ A +VTLG++ LL++ ++
Sbjct: 206 TIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINS 265
Query: 119 ILPPTSLVLPLIAKYLLFTFIMNT---VKSACLHYF 151
LPP S + I ++ ++ A +++
Sbjct: 266 QLPPVSYI-KAIDVWIGACMTFIFCALLEFALVNHI 300
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 100 bits (249), Expect = 1e-26
Identities = 40/77 (51%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 68 LFYTVNLILPTVLISFLCVLVFYLPAEAG-EKVTLGISILLSLVVFLLLVSKILPPTSLV 126
LFY +N+I P VLIS L VLV++LPA+AG +K TL IS+LL+ +FL L+++ +P TSL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLN 61
Query: 127 LPLIAKYLLFTFIMNTV 143
+PLI KYL+F ++ +
Sbjct: 62 VPLIGKYLIFVMFVSML 78
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 89.2 bits (221), Expect = 1e-22
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDIT 58
+FGSW ++ D+V + +DK ++ + + +I+E A Y + ++
Sbjct: 148 FQFGSWVYSVDEVDIHFMDDK--AEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMK 205
Query: 59 FYIIIRRKTLFYTVN 73
+ + +R + T +
Sbjct: 206 YLLALRSENGNSTYS 220
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 87.6 bits (217), Expect = 4e-22
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDIT 58
+KFGSW ++G ++ L D+ VDLS Y+ S ++I+ V Y D+
Sbjct: 151 VKFGSWVYSGFEIDLKTDTDQ--VDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVN 208
Query: 59 FYIIIRRKTLFYTVNLIL 76
+ R + L
Sbjct: 209 LVVKFRERRAGNGFFRNL 226
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 82.2 bits (203), Expect = 4e-20
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDIT 58
+K GSWT + ++S+ + N D + + ++I++V N Y D+
Sbjct: 139 IKIGSWTHHSREISVDPTTE-NSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVE 197
Query: 59 FYIIIRRKTLFYTV 72
+ R+K +
Sbjct: 198 VSLNFRKKGRSEIL 211
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 76.3 bits (188), Expect = 6e-18
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV-YDEHQPTET--DI 57
MK G+ T++G V++ +D+ DLS++ +SG W I E + + + PT DI
Sbjct: 145 MKLGTRTYDGSAVAINPESDQ--PDLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDI 202
Query: 58 TFYIIIRRK 66
T++ +++R
Sbjct: 203 TYHFVMQRL 211
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 76.0 bits (187), Expect = 7e-18
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDIT 58
+K GSWT + Q +L + V++++Y+ S +D++ LN Y + DI
Sbjct: 137 IKVGSWTHDNKQFALITGEE-GVVNIAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIE 195
Query: 59 FYIIIRRK 66
R+K
Sbjct: 196 ITFAFRKK 203
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 72.9 bits (179), Expect = 1e-16
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDIT 58
+KFGSWT + ++ L + D+S Y ++++ V + Y+ + D+T
Sbjct: 140 LKFGSWTHHSRELDLQMQE----ADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVT 195
Query: 59 FYIIIRRK 66
F + R+K
Sbjct: 196 FTVTFRKK 203
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 62.0 bits (151), Expect = 1e-12
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDIT 58
+ + + + L D V +D WDI A + + E+ +
Sbjct: 128 IYLIVRSVDTRNIVL--AVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLD 185
Query: 59 FYIIIRRKTLFY 70
+ + I R+ +
Sbjct: 186 YQLRISRQGGHH 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.019
Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 39/103 (37%)
Query: 10 GDQVSLALYN-DKNFVDLSDYWKSGTWDIIEVPAYL-----NVYDEHQPTETD---ITFY 60
G QV ++L N KN V + SG P L + P+ D I F
Sbjct: 363 GKQVEISLVNGAKNLV-V-----SGP------PQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 61 IIIRRKTLFYTVNLILPTVLISFLCVLV-F---YLPAEAGEKV 99
RK FL V F L A + +
Sbjct: 411 ---ERK----------LKFSNRFLPVASPFHSHLL-VPASDLI 439
Score = 28.5 bits (63), Expect = 1.6
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 18/64 (28%)
Query: 117 SKILP-----------PTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATG-NTFD 164
+KILP PT+ L+ K+L ++ + V+ + + F ++L F+
Sbjct: 38 NKILPEPTEGFAADDEPTT-PAELVGKFL--GYVSSLVEPSKVGQFD--QVLNLCLTEFE 92
Query: 165 MNTY 168
N Y
Sbjct: 93 -NCY 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.41
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 37/159 (23%)
Query: 21 KNFVDLSDYWKSGTWD----IIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLIL 76
++ + D WK D IIE + LNV + P E + +F +++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIE--SSLNVLE---PAEY----------RKMFDRLSVFP 382
Query: 77 PTVLIS--FLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYL 134
P+ I L ++ F + V ++ + LV K +++ +P I YL
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV-------VNKLHKYSLVEKQPKESTISIPSI--YL 433
Query: 135 LFTFIMNTVKSACLHYFLL--YELLATGNTFDMNTYQKN 171
+ LH ++ Y + TFD +
Sbjct: 434 ELK--VKLENEYALHRSIVDHYNIPK---TFDSDDLIPP 467
Score = 26.4 bits (57), Expect = 6.6
Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 45/152 (29%)
Query: 12 QVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYT 71
L D N+ SD+ + I + A L + +P Y L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-------Y----ENCL--- 247
Query: 72 VNLIL-----PTVLISFL--C-VLV--------FYLPAEAGEKVTL-----GISILLSLV 110
L+L +F C +L+ +L A ++L ++
Sbjct: 248 --LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 111 VFLLLVSKI---LPPTS-----LVLPLIAKYL 134
+ L + LP L +IA+ +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 27.8 bits (62), Expect = 1.9
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 4 GSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDITFYI 61
G W+F D + W+SG + VP+ N D +Y
Sbjct: 23 GLWSFRADFSDNRRRGFEEQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWY- 81
Query: 62 IIRRKTLF 69
+ +
Sbjct: 82 ---EREVI 86
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Streptomyces coelicolor}
Length = 405
Score = 27.4 bits (61), Expect = 2.9
Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 12/72 (16%)
Query: 6 WTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLN---VYDEHQ---PTETDIT- 58
N +LA + VD+ Y +PA L + P
Sbjct: 68 VMVNLYDKTLAWTDVGATVDVKPYLDDWGLRGRVLPAALADWTDDEGRVRAFPYFATNWP 127
Query: 59 -FYIIIRRKTLF 69
Y + L
Sbjct: 128 VAY----NRALL 135
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 26.7 bits (59), Expect = 5.0
Identities = 9/82 (10%), Positives = 21/82 (25%), Gaps = 13/82 (15%)
Query: 6 WTFNGDQVSLALYNDKN-FVDLSDYWKSGTWDIIEVPAYLNV--YDEHQ---PTETDIT- 58
+ + + + N DLS ++ W +++ Y P +
Sbjct: 63 FQVHAGMELIGTWVVANRMEDLSALFRQEGWLQAFPKGLIDLISYKGGIWSVPVNIHRSN 122
Query: 59 --FYIIIRRKTLFYTVNLILPT 78
+Y + P
Sbjct: 123 VMWY----LPAKLKGWGVNPPR 140
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein;
solute-binding protein, blood group antigen,
carbohydrate transport; HET: A2G GAL FUC; 2.35A
{Streptococcus pneumoniae}
Length = 430
Score = 26.3 bits (58), Expect = 6.1
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 9 NGDQVSLALYNDKNFVDLSDYW-KSGTWDIIEVPAYLNVYDEHQ---PTETDIT--FYII 62
G+ VSLA K +DL Y + + + N D + +Y
Sbjct: 106 AGNAVSLAAIEQKLVLDLKPYIDSNKLEKNVGLNYKQNQKDGKIYTVHEQLFTMGLWY-- 163
Query: 63 IRRKTLF 69
K +F
Sbjct: 164 --NKDIF 168
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 26.2 bits (57), Expect = 6.3
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 12 QVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYT 71
++ N+ + S + G + ++E L+ D H T + + R L Y
Sbjct: 57 TITKVYANNSGGLSFSIFNNRGKYVVLE----LSTEDLHSNTIVFGPNF-LNTRMKLDYI 111
Query: 72 VNLILP 77
V+ ++P
Sbjct: 112 VSQLVP 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.433
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,610,740
Number of extensions: 147580
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 45
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.1 bits)