RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11692
         (171 letters)



>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score =  101 bits (253), Expect = 1e-27
 Identities = 40/83 (48%), Positives = 56/83 (67%)

Query: 68  LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 127
           LFY V  I+P +LIS L +LVFYLP +AGEK++L IS LL++ VFLLL++  +P TSL +
Sbjct: 2   LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 128 PLIAKYLLFTFIMNTVKSACLHY 150
           P+I +YL+F  I+          
Sbjct: 62  PIIIRYLMFIMILVAFSVILSVV 84


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score =  100 bits (250), Expect = 3e-27
 Identities = 44/84 (52%), Positives = 55/84 (65%)

Query: 68  LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 127
           LFY +N I P VLISFL  L FYLPAE+GEK++  IS+LL+  VFLLL S+ LP T+L +
Sbjct: 2   LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 128 PLIAKYLLFTFIMNTVKSACLHYF 151
           PLI KYL+F   + T         
Sbjct: 62  PLIGKYLMFIMSLVTGVIVNCGIV 85


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 96.1 bits (238), Expect = 2e-25
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 68  LFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTLGISILLSLVVFLLLVSKILPPTSLV 126
           LFY +N+I P VLIS L VLV++LPA+A G+K TL IS+LL+  +FL L+++ +P TSL 
Sbjct: 2   LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLN 61

Query: 127 LPLIAKYLLFTFIMNTVKSACLHYF 151
           +PLI KYL+F   ++ +        
Sbjct: 62  VPLIGKYLIFVMFVSMLIVMNCVIV 86


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 92.1 bits (228), Expect = 4e-24
 Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 68  LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 127
           L++ VN+I+P +L SFL  LVFYLP ++GEK+TL IS+LLSL VFLL++ +++P TS  +
Sbjct: 2   LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 128 PLIAKYLLFTFIMNTVKSACLHYFLLY 154
           PLI KY+LFT I     S  +   ++ 
Sbjct: 62  PLIGKYMLFTMIFVIS-SIIITVVVIN 87


>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 54.4 bits (130), Expect = 3e-10
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 1   MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDIT 58
           +K GSWT +  ++S+    + N  D   + +   ++I++V    N   Y        D+ 
Sbjct: 139 IKIGSWTHHSREISVDPTTE-NSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVE 197

Query: 59  FYIIIRRK 66
             +  R+K
Sbjct: 198 VSLNFRKK 205


>d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
           protein {Murine minute virus, strain i [TaxId: 10794]}
          Length = 549

 Score = 27.9 bits (62), Expect = 0.68
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 147 CLHYFLLYELLATGNTFDMNTYQ 169
            +       LL TG+ F   TY 
Sbjct: 211 TIENTQQITLLRTGDEFATGTYY 233


>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 204

 Score = 26.8 bits (58), Expect = 1.1
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 4  GSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDITFYI 61
          G W+F  D         +        W+SG    + VP+  N    D          +Y 
Sbjct: 22 GLWSFRADFSDNRRRGFEEQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYE 81


>d1edya_ b.2.4.1 (A:) alpha-1-macroglobulin {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 134

 Score = 24.1 bits (52), Expect = 8.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 41  PAYLNVYDEHQPTETDITFY 60
           PA + VYD ++  E  I  Y
Sbjct: 107 PAPVKVYDYYETDEFAIEEY 126


>d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 130

 Score = 23.7 bits (51), Expect = 9.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 41  PAYLNVYDEHQPTETDITFY 60
           PA + VYD ++  E  +  Y
Sbjct: 106 PAIVKVYDYYETDEFAVAEY 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.433 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 645,396
Number of extensions: 28804
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 12
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.6 bits)