RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11693
(579 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 168 bits (428), Expect = 2e-49
Identities = 71/180 (39%), Positives = 95/180 (52%), Gaps = 1/180 (0%)
Query: 268 AFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFS 327
+ + L G + C +CGK+FSR HL +H H GEKP+KC C K+FS
Sbjct: 2 SEFGSSSSVAQAALE-PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 328 HKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSE 387
K L H TH+ K ++C C K+F+ R +L+AH H G P+ C EC K FS +
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 388 LNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
L H + H G KP+ C C KSF ++ L H TH+ KPY C C KSF +R+ H
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 168 bits (428), Expect = 3e-49
Identities = 70/183 (38%), Positives = 97/183 (53%), Gaps = 2/183 (1%)
Query: 246 LDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLV 305
+ G KPY C C K+F++ +L H H G ++C +CGK+FS K L
Sbjct: 9 SVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTH-TGEKPYKCPECGKSFSDKKDLT 66
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTN 365
+H H GEKP+KC C K+FS + +L H TH+ K + C C K+F+ HL+AH
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 366 KHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSK 425
H G P+ C EC K FS + L+ H + H G KP+ C C KSF ++ L H TH+
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 426 VKP 428
K
Sbjct: 187 KKT 189
Score = 107 bits (270), Expect = 4e-27
Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 46/227 (20%)
Query: 115 AFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFND 172
+ ++ + + + + C C K FS +H+ H + + C C +SF+D
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 173 RKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGG 232
+K+ H H EK + C C K F ++ L AH
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH------------------------- 96
Query: 233 VGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCD 292
Q +H G KPY C C K+F+Q +L+ H H G ++C
Sbjct: 97 ------------------QRTHTGEKPYACPECGKSFSQLAHLRAHQRTH-TGEKPYKCP 137
Query: 293 QCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
+CGK+FSR+ +L H H GEKP+KC C K+FS + LN H TH
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 44.7 bits (107), Expect = 2e-05
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCE 164
+ C C ++F++ A+L+ H H + + C C K FS H+ H + + C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 165 VCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH 207
C +SF+ + H H EK + C C K F R+D L H
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 135 bits (343), Expect = 3e-37
Identities = 50/212 (23%), Positives = 76/212 (35%), Gaps = 37/212 (17%)
Query: 251 QTSHRGIKPYVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRCDQ--CGKAFSRKGHLVQ 306
+ K Y+C C A+ + + L+ HL H G F C + C K F+ HL +
Sbjct: 4 KALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH-TGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 307 HSFVHGGEKPFKCS--YCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHT 364
HS H GEK F C C F+ K ++ +H K
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK--------------------- 101
Query: 365 NKHEGVLPHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACT--VCNKSFLQKTQLQNHL 420
+ + C C K F ++L H H P+ C C+K F ++L+ H
Sbjct: 102 -----ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
Query: 421 YTHSKVKPYNCGICAKSFVQRNTYIKHLEIVH 452
H+ C+ Y+KH+ H
Sbjct: 157 KVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 112 bits (282), Expect = 7e-29
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 305 VQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKY--CPKTFTLRKHL 360
+ + K + CS+ C A++ L HL H+ K F CK C K FT HL
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 361 KAHTNKHEGVLPHTCLE--CSKCFSTKSELNRHAQIHGGVK--PFACTV--CNKSFLQKT 414
H+ H G TC C F+TK+ + +H +K + C C K+F +
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 415 QLQNHLYTHSKVKPYNC--GICAKSFVQRNTYIKH 447
QL+ H ++H++ PY C C K F + +H
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 80.7 bits (200), Expect = 9e-18
Identities = 51/207 (24%), Positives = 73/207 (35%), Gaps = 35/207 (16%)
Query: 152 KHKMVH--RQVFTCEV--CMRSFNDRKEFNEHIMKHEKEKLFSCN--FCLKPFLRKDLLE 205
K + + + C C ++N + H+ KH EK F C C K F L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 206 AHVNSVHKDVKKYNCEE--CDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIK--PYV 261
H H K + C+ CD + + + + H IK YV
Sbjct: 62 RHSL-THTGEKNFTCDSDGCDLRF-TT------------KANMKKH-FNRFHNIKICVYV 106
Query: 262 CEI--CSKAFTQQYNLKHHLLLHGDGNSLFRCDQ--CGKAFSRKGHLVQHSFVHGG---E 314
C C KAF + LK H H + C C K FS L +H VH G +
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 165
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYTHSE 341
K CS+ K ++ +L H +
Sbjct: 166 KDDSCSFVGKTWTL--YLKHVAECHQD 190
Score = 70.3 bits (173), Expect = 3e-14
Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 358 KHLKAHTNKHEGVLPHTC--LECSKCFSTKSELNRHAQIHGGVKPFACT--VCNKSFLQK 413
+ C +C ++ +L H H G KPF C C K F
Sbjct: 2 GEKALPV----VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSL 57
Query: 414 TQLQNHLYTHSKVKPYNC--GICAKSFVQRNTYIKHLEIVHG 453
L H TH+ K + C C F + KH H
Sbjct: 58 HHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Score = 44.1 bits (105), Expect = 3e-05
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 11/126 (8%)
Query: 110 EVCQQAFTRNADLKVHSMVHKIAQLHKCE--LCYKMFSDKLLYEKHKMVH----RQVFTC 163
E C++ FT L HS+ H + C+ C F+ K +KH V+ C
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107
Query: 164 EV--CMRSFNDRKEFNEHIMKHEKEKLFSCN--FCLKPFLRKDLLEAHVNSVHKDVKKYN 219
C ++F + H H ++ + C C K F L+ H VH
Sbjct: 108 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKK 166
Query: 220 CEECDK 225
+ C
Sbjct: 167 DDSCSF 172
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 122 bits (309), Expect = 6e-33
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLH--GDGNSLFRCDQCG-----KAFSRKGHLVQHSFV 310
+ CS+ F Q L HH+ F C G + F + LV H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 311 HGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKY--CPKTFTLRKHLKAHTNK 366
H GEKP KC++ C K++S +L HL +H+ K + C++ C K F+ H N+
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 367 -HEGVLPHTC--LECSKCFSTKSELNRHAQIHGG 397
H P+ C C+K ++ S L +H + G
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 120 bits (302), Expect = 5e-32
Identities = 46/178 (25%), Positives = 68/178 (38%), Gaps = 39/178 (21%)
Query: 289 FRCDQCGKAFSRKGHLVQH---SFVHGGEKPFKCSYC-----PKAFSHKGHLNEHLYTHS 340
R D C + F + LV H +HG K F C + + F + L H+ H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 341 ENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKP 400
K +C + C K +S L H + H G KP
Sbjct: 64 GEKPHKCTFE--------------------------GCRKSYSRLENLKTHLRSHTGEKP 97
Query: 401 FACT--VCNKSFLQKTQLQNHLY-THSKVKPYNCGI--CAKSFVQRNTYIKHLEIVHG 453
+ C C+K+F + H THS KPY C + C K + ++ KH++ VHG
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 101 bits (255), Expect = 2e-25
Identities = 51/192 (26%), Positives = 73/192 (38%), Gaps = 51/192 (26%)
Query: 186 EKLFSCNFCLKPFLRKDLLEAHVNS--VHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQ 243
E + C + F ++ L H+NS +H + K++ C
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------------------- 41
Query: 244 GELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCD--QCGKAFSRK 301
C + F QY L H+ H G +C C K++SR
Sbjct: 42 ------------------CSRELRPFKAQYMLVVHMRRH-TGEKPHKCTFEGCRKSYSRL 82
Query: 302 GHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLY-THSENKCFQCKY--CPKTFT- 355
+L H H GEKP+ C + C KAFS+ +H THS K + CK C K +T
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142
Query: 356 ---LRKHLKAHT 364
LRKH+K
Sbjct: 143 PSSLRKHVKTVH 154
Score = 94.6 bits (236), Expect = 6e-23
Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 30/146 (20%)
Query: 314 EKPFKCSYCPKAFSHKGHLNEHLYT---HSENKCFQCKYCPKTFTLRKHLKAHTNKHEGV 370
E + C + F + L H+ + H E K F C +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG-------------------- 40
Query: 371 LPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSKVKP 428
C + F + L H + H G KP CT C KS+ + L+ HL +H+ KP
Sbjct: 41 ---GCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP 97
Query: 429 YNC--GICAKSFVQRNTYIKHLEIVH 452
Y C C+K+F + KH H
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 72.2 bits (178), Expect = 3e-15
Identities = 47/241 (19%), Positives = 65/241 (26%), Gaps = 97/241 (40%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQ---LHKCELCYKMFSDKLLYEKHKMVHRQVFTC 163
+ C Q F L H I C C
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG---------------------GC 42
Query: 164 EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEEC 223
+R F + H+ +H EK C F E C
Sbjct: 43 SRELRPFKAQYMLVVHMRRHTGEKPHKCTF---------------------------EGC 75
Query: 224 DKYYLSQGGVGCVFLYYLSQGE-LDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 282
K Y S+ E L +H+++ H G KPY+CE
Sbjct: 76 RKSY--------------SRLENLKTHLRS-HTGEKPYMCEH------------------ 102
Query: 283 GDGNSLFRCDQCGKAFSRKGHLVQHSF-VHGGEKPFKCSY--CPKAFSHKGHLNEHLYTH 339
+ C KAFS +H H EKP+ C C K ++ L +H+ T
Sbjct: 103 ---------EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Query: 340 S 340
Sbjct: 154 H 154
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 118 bits (299), Expect = 6e-32
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEH---LYTHSENKCF 345
C C K F K +L H+ H GEKPF+C C K + K +L EH + + F
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 346 QCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRH-AQIHGGVK 399
C C +TF R L+ H H G +P+ C CS+ F K +L H ++H G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 116 bits (292), Expect = 6e-31
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAH---TNKH 367
G +C C K F K +L H H+ K F+C C K + +++L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 368 EGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNH 419
TC C + F + EL H H G P+ C+ C++ F+QK LQ+H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 79.9 bits (198), Expect = 3e-18
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNH---LYTH 423
G C C K F +K L H + H G KPF C C K + +K L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 424 SKVKPYNCGICAKSFVQRNTYIKH 447
+ + C +C ++F +R H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLH 85
Score = 78.3 bits (194), Expect = 1e-17
Identities = 36/155 (23%), Positives = 49/155 (31%), Gaps = 45/155 (29%)
Query: 183 HEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLS 242
C C K FL K L+ H N H K + C +C K Y +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCY-FR------------ 47
Query: 243 QGELDSH--VQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSR 300
+ L H +R + + C + C + F R
Sbjct: 48 KENLLEHEARNCMNRSEQVFTCSV-----------------------------CQETFRR 78
Query: 301 KGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEH 335
+ L H H GE P+KCS C + F K L H
Sbjct: 79 RMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 62.1 bits (152), Expect = 6e-12
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH--VNSVHKDVKKY 218
C C + F + H KH EK F C C K + RK+ L H N +++ + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 219 NCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHH 278
C C + + + + EL H SH G PY C CS+ F Q+ +L+ H
Sbjct: 68 TCSVCQETF-RR------------RMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 53.3 bits (129), Expect = 6e-09
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHR-----QVF 161
C C + F LKVH+ H + +C C K + K +H+ + QVF
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 162 TCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVH 212
TC VC +F R E H++ H E + C+ C + F++K L++H+ +H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 117 bits (295), Expect = 4e-31
Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 36/161 (22%)
Query: 254 HRGIKPYVCEICSKAFTQQYNLKHHLLLH--------GDGNSLFRCDQCGKAFSRKGHLV 305
+ C + F+ + L H+ + C + GK+F K LV
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 306 QHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAH 363
H VH GEKPF C + C K F+ +L H TH+ K F+C++
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF-------------- 125
Query: 364 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
C + F+ S+ +H +H K +
Sbjct: 126 ------------EGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 117 bits (294), Expect = 6e-31
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 294 CGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH-------SENKCFQ 346
G + + ++ + C + FS L H+ + + C+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 347 --CKYCPKTFTLRKHLKAHTNKHEGVLPHTC--LECSKCFSTKSELNRHAQIHGGVKPFA 402
C K+F + L H H G P C C K F+ L H + H G KPF
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 403 CTV--CNKSFLQKTQLQNHLYTHSKVKPYNC 431
C C++ F + + H++ H+ K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 80.4 bits (199), Expect = 4e-18
Identities = 33/164 (20%), Positives = 51/164 (31%), Gaps = 39/164 (23%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNC 220
+ C R+F+ E H+ N C
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW--------------------EEC 65
Query: 221 EECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEI--CSKAFTQQYNLKHH 278
K + + +L +H++ H G KP+ C C K F + NLK H
Sbjct: 66 PREGKSF-KA------------KYKLVNHIRV-HTGEKPFPCPFPGCGKIFARSENLKIH 111
Query: 279 LLLHGDGNSLFRC--DQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
H G F+C + C + F+ +H VH +K S
Sbjct: 112 KRTH-TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 56.1 bits (136), Expect = 1e-09
Identities = 11/80 (13%), Positives = 19/80 (23%), Gaps = 9/80 (11%)
Query: 377 ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY------- 429
+ I C+++F +L H+ P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 430 --NCGICAKSFVQRNTYIKH 447
C KSF + + H
Sbjct: 62 WEECPREGKSFKAKYKLVNH 81
Score = 39.2 bits (92), Expect = 0.001
Identities = 6/48 (12%), Positives = 14/48 (29%)
Query: 406 CNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 453
S Q + + C ++F + + H+ + H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV 50
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 113 bits (285), Expect = 5e-30
Identities = 43/145 (29%), Positives = 55/145 (37%), Gaps = 31/145 (21%)
Query: 289 FRCDQ--CGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQ 346
C C K F + +H HG + C+ C KAF L H H+ K FQ
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 347 CKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTV- 405
C T C K FS L H +IH G +P+ C
Sbjct: 65 C--------------------------TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 98
Query: 406 -CNKSFLQKTQLQNHLYTHSKVKPY 429
CNK F Q T L++H+ TH+K K
Sbjct: 99 GCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 97.6 bits (244), Expect = 2e-24
Identities = 39/140 (27%), Positives = 50/140 (35%), Gaps = 35/140 (25%)
Query: 314 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 371
+ C + C K F + +HL+TH
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPR----------------------------- 33
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSKVKPY 429
H C EC K F S+L RH +H G KPF CT C K F L+ H+ H+ +PY
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 430 NCGI--CAKSFVQRNTYIKH 447
C C K F Q H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSH 113
Score = 91.8 bits (229), Expect = 2e-22
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 246 LDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRC--DQCGKAFSRKGH 303
+ H+ T H G + +VC C KAF + LK H L+H G F+C + CGK FS +
Sbjct: 23 MRKHLHT-H-GPRVHVCAECGKAFVESSKLKRHQLVH-TGEKPFQCTFEGCGKRFSLDFN 79
Query: 304 LVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQ 346
L H +H G++P+ C + C K F+ +L H+ TH++ K Q
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 71.4 bits (176), Expect = 3e-15
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 185 KEKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLS 242
+ + +C C K F + H++ H + + C EC K + +
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLH-THGP-RVHVCAECGKAF-VE------------ 46
Query: 243 QGELDSHVQTSHRGIKPYVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRC--DQCGKAF 298
+L H Q H G KP+ C C K F+ +NL+ H+ +H G+ + C D C K F
Sbjct: 47 SSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH-TGDRPYVCPFDGCNKKF 104
Query: 299 SRKGHLVQHSFVHGGEKPFK 318
++ +L H H K +
Sbjct: 105 AQSTNLKSHILTHAKAKNNQ 124
Score = 44.0 bits (105), Expect = 1e-05
Identities = 40/180 (22%), Positives = 57/180 (31%), Gaps = 72/180 (40%)
Query: 107 FTC--EVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQVFTCE 164
C + C + F N+ ++ H H + V C
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHG--------------------PR-------VHVCA 38
Query: 165 VCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECD 224
C ++F + + H + H EK F C F E C
Sbjct: 39 ECGKAFVESSKLKRHQLVHTGEKPFQCTF---------------------------EGCG 71
Query: 225 KYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEI--CSKAFTQQYNLKHHLLLH 282
K + S L +HV+ H G +PYVC C+K F Q NLK H+L H
Sbjct: 72 KRF-SL------------DFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 37.9 bits (89), Expect = 0.002
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCEL--CYKMFSDKLLYEKHKMVH--RQVFT 162
C C +AF ++ LK H +VH + +C C K FS H +H + +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 163 CEV--CMRSFNDRKEFNEHIMKHEKEK 187
C C + F HI+ H K K
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKAK 121
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 107 bits (270), Expect = 4e-28
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 252 TSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVH 311
+ G K Y C+ C K+FT + H+ +H G + C CGK F K HLV H +H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 312 GGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKA 362
G KP++C+ C K F + + H S K ++ + T +
Sbjct: 61 TGIKPYECNICAKRFMWRDSFHRH--VTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 102 bits (258), Expect = 2e-26
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 293 QCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPK 352
QCGK+F+ K +H +H G +P+ C C K F K HL H+ H+ K ++C C K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 353 TFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELN 389
F R H + + + + + S +
Sbjct: 74 RFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 92.9 bits (232), Expect = 5e-23
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 31/132 (23%)
Query: 310 VHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEG 369
G+K + C C K+F+HK + H+ H +
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLR-------------------------- 36
Query: 370 VLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 429
P+ C C K F K L H +IH G+KP+ C +C K F+ + H + S K Y
Sbjct: 37 --PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSY 92
Query: 430 NCGICAKSFVQR 441
++ +
Sbjct: 93 EAAKAEQNTTEA 104
Score = 88.3 bits (220), Expect = 2e-21
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 246 LDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLV 305
D H + H G++PY C +C K F +++L H+ +H G + C+ C K F +
Sbjct: 25 RDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-TGIKPYECNICAKRFMWRDSFH 82
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLN 333
+H V K ++ + + + +
Sbjct: 83 RH--VTSCTKSYEAAKAEQNTTEASGPS 108
Score = 78.3 bits (194), Expect = 9e-18
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKV 426
G + C +C K F+ KS+ +RH +H G++P+ C VC K F K L H+ H+ +
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 427 KPYNCGICAKSFVQRNTYIKH 447
KPY C ICAK F+ R+++ +H
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 42.4 bits (101), Expect = 3e-05
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCE 164
+ C+ C ++FT + H +H + + C +C K F K H +H + + C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 165 VCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRK 201
+C + F R F+ H+ K + +
Sbjct: 70 ICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEA 104
Score = 41.7 bits (99), Expect = 6e-05
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 136 KCELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNF 193
C+ C K F+ K ++H +H + + C VC + F + H+ H K + CN
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 194 CLKPFLRKDLLEAHVNSVHKDVKKYNCEECDK 225
C K F+ +D H V K Y + ++
Sbjct: 71 CAKRFMWRDSFHRH---VTSCTKSYEAAKAEQ 99
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 106 bits (266), Expect = 1e-27
Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 258 KPYVCE--ICSKAFTQQYNLKHHLLLHGDGNSLFRCD--QCGKAFSRKGHLVQHSFVHGG 313
+P++C C+K + + +L+ H H G ++CD C + FSR L +H H G
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 314 EKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPH 373
KPF+C C + FS HL H TH+ K F C++
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRW------------------------ 99
Query: 374 TCLECSKCFSTKSELNRHAQIH 395
C K F+ EL RH +H
Sbjct: 100 --PSCQKKFARSDELVRHHNMH 119
Score = 105 bits (264), Expect = 3e-27
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 313 GEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKY--CPKTFTLRKHLKAHTNKHE 368
++PF C+Y C K + HL H H+ K +QC + C + F+ LK H +H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 369 GVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC--TVCNKSFLQKTQLQNHLYTH 423
GV P C C + FS L H + H G KPF+C C K F + +L H H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 70.2 bits (173), Expect = 8e-15
Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 50/160 (31%)
Query: 186 EKLFSCN--FCLKPFLRKDLLEAHVNSVHKDVKKYNCE--ECDKYYLSQGGVGCVFLYYL 241
++ F C C K + + L+ H H K Y C+ +C++ + S+
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRF-SR----------- 50
Query: 242 SQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRK 301
+L H + H G+KP+ C+ C + FSR
Sbjct: 51 -SDQLKRHQRR-HTGVKPFQCKT-----------------------------CQRKFSRS 79
Query: 302 GHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTH 339
HL H+ H GEKPF C + C K F+ L H H
Sbjct: 80 DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 44.0 bits (105), Expect = 1e-05
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 107 FTCE--VCQQAFTRNADLKVHSMVHKIAQLHKCEL--CYKMFSDKLLYEKHKMVHRQV-- 160
F C C + + + + L++HS H + ++C+ C + FS ++H+ H V
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNF--CLKPFLRKDLLEAH 207
F C+ C R F+ H H EK FSC + C K F R D L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 41.4 bits (98), Expect = 8e-05
Identities = 31/156 (19%), Positives = 45/156 (28%), Gaps = 51/156 (32%)
Query: 135 HKCE--LCYKMFSDKLLYEKHKMVH--RQVFTCEV--CMRSFNDRKEFNEHIMKHEKEKL 188
C C K + + H H + + C+ C R F+ + H +H K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 189 FSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDS 248
F C C + F R D L+ H
Sbjct: 67 FQCKTCQRKFSRSDHLKTH----------------------------------------- 85
Query: 249 HVQTSHRGIKPYVCEI--CSKAFTQQYNLKHHLLLH 282
+H G KP+ C C K F + L H +H
Sbjct: 86 --TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.1 bits (74), Expect = 0.14
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 107 FTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFT 162
+ C+ C++ F+R+ LK H H + +C+ C + FS + H H + F+
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 163 CEV--CMRSFNDRKEFNEHIMKH 183
C C + F E H H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 100 bits (253), Expect = 5e-26
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 253 SHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHG 312
S P+ CE+C K F+++ LK H+ H G ++C C A + L +H +H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 313 GEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
E+PFKC CP A + L HL +H+ +
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 98.3 bits (246), Expect = 4e-25
Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 28/122 (22%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGV 370
G P KC C K FS K L H+ H+ GV
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHT----------------------------GV 34
Query: 371 LPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYN 430
P+ C C + S LN+H +IH +PF C +C + +QL HL +H+ +
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPS 94
Query: 431 CG 432
G
Sbjct: 95 SG 96
Score = 97.9 bits (245), Expect = 6e-25
Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 28/115 (24%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
+C+ CGK FSRK L H H G KP+KC C A + LN+HL HS+ +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER----- 63
Query: 349 YCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
P C C S+L H + H G +
Sbjct: 64 -----------------------PFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 85.2 bits (212), Expect = 2e-20
Identities = 29/84 (34%), Positives = 39/84 (46%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKV 426
PH C C KCFS K +L H + H GVKP+ C C+ + + L HL HS
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 427 KPYNCGICAKSFVQRNTYIKHLEI 450
+P+ C IC + + HL
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRS 86
Score = 80.9 bits (201), Expect = 6e-19
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 216 KKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNL 275
+ CE C K + S+ + +L +H H G+KPY C+ C A +L
Sbjct: 7 GPHKCEVCGKCF-SR------------KDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSL 52
Query: 276 KHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKC 319
HL +H F+C C A L H H G+
Sbjct: 53 NKHLRIH-SDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 42.0 bits (100), Expect = 3e-05
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCE 164
CEVC + F+R LK H H + +KC+ C +D KH +H + F C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 165 VCMRSFNDRKEFNEHIMKHEKEKLFSC 191
+C + + + H+ H + S
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 40.1 bits (95), Expect = 1e-04
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNC 220
CEVC + F+ + + H+ H K + C C L H +H D + + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKC 67
Query: 221 EECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVC 262
+ C +L H SH G
Sbjct: 68 QICPYAS-RN------------SSQLTVH-LRSHTGDSGPSS 95
Score = 39.3 bits (93), Expect = 3e-04
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 135 HKCELCYKMFSDKLLYEKHKMVHRQV--FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCN 192
HKCE+C K FS K + H H V + C+ C + D N+H+ H E+ F C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 193 FCLKPFLRKDLLEAH 207
C L H
Sbjct: 69 ICPYASRNSSQLTVH 83
Score = 30.5 bits (70), Expect = 0.36
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 422 THSKVKPYNCGICAKSFVQRNTYIKH 447
+ P+ C +C K F +++ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTH 27
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 100 bits (252), Expect = 1e-25
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 246 LDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLV 305
+ + K ++C+ C + FT+ YNL H H + CD C KAF R+ HL
Sbjct: 5 SSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLR 62
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
H ++H EKPFKC C K F L H H +
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 100 bits (252), Expect = 1e-25
Identities = 26/104 (25%), Positives = 38/104 (36%)
Query: 301 KGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHL 360
+K F C +C + F+ +L H TH++ + + C C K F + HL
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 361 KAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ H H P C EC K F L H +H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 83.3 bits (207), Expect = 1e-19
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 355 TLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKT 414
C C + F+ L H + H +P+ C +C+K+F ++
Sbjct: 4 GSSGGRLPSK----TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Query: 415 QLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
L++H Y HSK KP+ C C K F Q T H
Sbjct: 60 HLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 79.0 bits (196), Expect = 3e-18
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 211 VHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFT 270
K K++ C+ C +++ ++ L H + +H +PY C+IC KAF
Sbjct: 11 PSKTKKEFICKFCGRHF-TK------------SYNLLIH-ERTHTDERPYTCDICHKAFR 56
Query: 271 QQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+Q +L+ H +H F+C +CGK F + L H +H +
Sbjct: 57 RQDHLRDHRYIH-SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 63.2 bits (155), Expect = 1e-12
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 385 KSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTY 444
S + K F C C + F + L H TH+ +PY C IC K+F +++
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 445 IKH 447
H
Sbjct: 62 RDH 64
Score = 41.7 bits (99), Expect = 5e-05
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCE 164
F C+ C + FT++ +L +H H + + C++C+K F + H+ +H + F C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 165 VCMRSFNDRKEFNEHIMKHEKEKLFSCN 192
C + F + H H + +
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 95.3 bits (238), Expect = 5e-24
Identities = 33/85 (38%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 254 HRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGG 313
G CEIC K F Y+L H L H G + C CG F RK + H H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 314 E--KPFKCSYCPKAFSHKGHLNEHL 336
KP+ C C K FS HLN H+
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHI 85
Score = 91.8 bits (229), Expect = 8e-23
Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 27/112 (24%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
C+ CGK F HL +H H GEKP+ C C F K ++ H+ +H
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG------- 60
Query: 349 YCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQ-IHGGVK 399
P+ C C K FS LN H + +H G
Sbjct: 61 -------------------SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 84.8 bits (211), Expect = 2e-20
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHS-- 424
G C C K F LNRH H G KP++C VC F +K ++ H+ +H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 425 KVKPYNCGICAKSFVQRNTYIKHLEIVH 452
KPY C C K F + + H++ VH
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 70.2 bits (173), Expect = 3e-15
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 216 KKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNL 275
CE C K + L+ H + SH G KPY C +C F ++ +
Sbjct: 6 SGVACEICGKIF-RD------------VYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRM 51
Query: 276 KHHLLLH-GDGNSLFRCDQCGKAFSRKGHLVQHS-FVHGGEK 315
+H+ H G + C CGK FSR HL H VH G
Sbjct: 52 SYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 40.2 bits (95), Expect = 1e-04
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH----RQVFT 162
CE+C + F L H + H + + C +C F K H H + +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 163 CEVCMRSFNDRKEFNEHI 180
C+ C + F+ N HI
Sbjct: 68 CQSCGKGFSRPDHLNGHI 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 92.9 bits (232), Expect = 3e-23
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
F+C C + FSR HL H H GEKPF C C + F+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED 62
Query: 349 YCPKTFTLRKHLKAH 363
+ + HL+
Sbjct: 63 KVEELLSKNYHLENE 77
Score = 79.1 bits (196), Expect = 3e-18
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 29/105 (27%)
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHT 374
KPF+C C + FS HL H+ TH+ K P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEK----------------------------PFA 33
Query: 375 CLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNH 419
C C + F+ E RH I P + + L+N
Sbjct: 34 CDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENE 77
Score = 77.9 bits (193), Expect = 6e-18
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
P C C + FS L H + H G KPFAC +C + F + + + H P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILE 61
Query: 432 GICAKSFVQRNTYIKH 447
+ +
Sbjct: 62 DKVEELLSKNYHLENE 77
Score = 72.9 bits (180), Expect = 3e-16
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 215 VKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYN 274
+K + C C + + S+ L +H++T H G KP+ C+IC + F +
Sbjct: 1 MKPFQCRICMRNF-SR------------SDHLTTHIRT-HTGEKPFACDICGRKFARSDE 46
Query: 275 LKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSF---VHGGEK 315
K H + D+ + S+ HL GE+
Sbjct: 47 RKRHRDIQHILP--ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 54.8 bits (133), Expect = 9e-10
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 398 VKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+KPF C +C ++F + L H+ TH+ KP+ C IC + F + + +H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 47.5 bits (114), Expect = 3e-07
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 44/118 (37%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNC 220
F C +CMR+F+ HI H EK F+C+ C + F R D + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH------------- 50
Query: 221 EECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHH 278
+ I P + + + ++ Y+L++
Sbjct: 51 ------------------------------RDIQ-HILPILEDKVEELLSKNYHLENE 77
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQV-FTCEV 165
F C +C + F+R+ L H H + C++C + F+ ++H+ + + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 166 CMRSFNDR---KEFNEHIMKHEKEK 187
+ + + K E+
Sbjct: 64 VEELLSKNYHLENEVARLKKLVGER 88
Score = 37.9 bits (89), Expect = 7e-04
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 135 HKCELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCN 192
+C +C + FS H H + F C++C R F E H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILED 62
Query: 193 FCLKPFLRKDLLEAHV 208
+ + LE V
Sbjct: 63 KVEELLSKNYHLENEV 78
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 91.3 bits (228), Expect = 1e-22
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
F C CGK+F R L H +H +P+ C YC K F K + +H + H+ K +C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 349 YCPKTFTLRKHLKAHTNKHEG 369
C K F+ +L H+ KH G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 75.5 bits (187), Expect = 3e-17
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 375 CLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGIC 434
C C K F S L+ H IH +P+ C C K F QK+ ++ H + H+ KP+ C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 435 AKSFVQRNTYIKH 447
K+F Q + I H
Sbjct: 64 GKAFSQSSNLITH 76
Score = 71.3 bits (176), Expect = 9e-16
Identities = 31/79 (39%), Positives = 38/79 (48%)
Query: 345 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
F CK C K+F L H H P+ C C K F KS++ +H IH G KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 405 VCNKSFLQKTQLQNHLYTH 423
VC K+F Q + L H H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 62.8 bits (154), Expect = 9e-13
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 43/122 (35%)
Query: 218 YNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKH 277
++C+ C K + + L +H H +PY C+
Sbjct: 2 FDCKICGKSF-KR------------SSTLSTH-LLIHSDTRPYPCQY------------- 34
Query: 278 HLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLY 337
CGK F +K + +H+F+H GEKP KC C KAFS +L H
Sbjct: 35 ----------------CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Query: 338 TH 339
H
Sbjct: 79 KH 80
Score = 43.9 bits (105), Expect = 5e-06
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 401 FACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
F C +C KSF + + L HL HS +PY C C K F Q++ KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 42.4 bits (101), Expect = 2e-05
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 189 FSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDS 248
F C C K F R L H +H D + Y C+ C K + Q + ++
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRF-HQ------------KSDMKK 47
Query: 249 HVQTSHRGIKPYVCEICSKAFTQQYNLKHH 278
H H G KP+ C++C KAF+Q NL H
Sbjct: 48 H-TFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 33.9 bits (79), Expect = 0.014
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCE 164
F C++C ++F R++ L H ++H + + C+ C K F K +KH +H + C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 165 VCMRSFNDRKEFNEHIMKH 183
VC ++F+ H KH
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 33.9 bits (79), Expect = 0.014
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 136 KCELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNF 193
C++C K F H ++H + + C+ C + F+ + + +H H EK C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 194 CLKPFLRKDLLEAH 207
C K F + L H
Sbjct: 63 CGKAFSQSSNLITH 76
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 91.0 bits (227), Expect = 2e-22
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 289 FRC--DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQ 346
+ C + C + FS+ G L +H +H G+KPF+C C + FS HL H+ TH+ K
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK--- 61
Query: 347 CKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVK 399
P C C + F+ E RH +IH K
Sbjct: 62 -------------------------PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 82.9 bits (206), Expect = 1e-19
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 30/112 (26%)
Query: 314 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 371
E+P+ C C + FS G L H+ H+ K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQK---------------------------- 33
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTH 423
P C C + FS L H + H G KPFAC +C + F + + + H H
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 81.7 bits (203), Expect = 3e-19
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 372 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 429
P+ C C + FS L RH +IH G KPF C +C ++F + L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 430 NCGICAKSFVQRNTYIKHLEI 450
C IC + F + + +H +I
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 74.4 bits (184), Expect = 1e-16
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 216 KKYNC--EECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQY 273
+ Y C E CD+ + SQ G L H++ H G KP+ C IC + F++
Sbjct: 3 RPYACPVESCDRRF-SQ------------SGSLTRHIRI-HTGQKPFQCRICMRNFSRSD 48
Query: 274 NLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 315
+L H+ H G F CD CG+ F+R +H+ +H +K
Sbjct: 49 HLTTHIRTH-TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 43.6 bits (104), Expect = 7e-06
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 135 HKCEL--CYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFS 190
+ C + C + FS +H +H ++ F C +CMR+F+ HI H EK F+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 191 CNFCLKPFLRKDLLEAH 207
C+ C + F R D + H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 43.6 bits (104), Expect = 7e-06
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 107 FTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFT 162
+ C V C + F+++ L H +H + +C +C + FS H H + F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CEVCMRSFNDRKEFNEHIMKHEKEK 187
C++C R F E H H ++K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 89.5 bits (223), Expect = 5e-22
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 254 HRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCD--QCGKAFSRKGHLVQHSFVH 311
C K +T+ +LK HL H G + CD CG F+R L +H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 312 GGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
G +PF+C C +AFS HL H+ H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 84.5 bits (210), Expect = 3e-20
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 339 HSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC--LECSKCFSTKSELNRHAQIHG 396
+ C KT+T HLKAH H G P+ C C F+ EL RH + H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 397 GVKPFACTVCNKSFLQKTQLQNHLYTH 423
G +PF C C+++F + L H+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 82.6 bits (205), Expect = 2e-19
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQ 346
CGK +++ HL H H GEKP+ C + C F+ L H H+ ++ FQ
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 347 CKYCPKTFTLRKHLKAHTNKH 367
C+ C + F+ HL H +H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 77.2 bits (191), Expect = 1e-17
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 366 KHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTH 423
K C K ++ S L H + H G KP+ C C F + +L H H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 424 SKVKPYNCGICAKSFVQRNTYIKH 447
+ +P+ C C ++F + + H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALH 84
Score = 47.1 bits (113), Expect = 4e-07
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 182 KHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNC--EECDKYYLSQGGVGCVFLY 239
K C K + + L+AH+ H K Y+C + C + ++
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKF-AR--------- 49
Query: 240 YLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 282
EL H + H G +P+ C+ C +AF++ +L H+ H
Sbjct: 50 ---SDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 41.0 bits (97), Expect = 5e-05
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 152 KHKMVHRQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCN--FCLKPFLRKDLLEAHVN 209
K H C +++ H+ H EK + C+ C F R D L H
Sbjct: 1 KRTATH--TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Query: 210 SVHKDVKKYNCEECDK 225
H + + C++CD+
Sbjct: 59 K-HTGHRPFQCQKCDR 73
Score = 35.2 bits (82), Expect = 0.006
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 135 HKCELCYKMFSDKLLYEKHKMVHR--QVFTC--EVCMRSFNDRKEFNEHIMKHEKEKLFS 190
C K ++ + H H + + C + C F E H KH + F
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 191 CNFCLKPFLRKDLLEAHV 208
C C + F R D L H+
Sbjct: 68 CQKCDRAFSRSDHLALHM 85
Score = 26.3 bits (59), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
F C+ C +AF+R+ L +H H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 89.1 bits (222), Expect = 6e-22
Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 24/109 (22%)
Query: 302 GHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLK 361
G H GEKP+ CS+C K F K L+ H K
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLD------------------------MHFK 36
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSF 410
+ + + C +C K F+ ++ + RHA G S
Sbjct: 37 RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 88.0 bits (219), Expect = 2e-21
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 244 GELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSL---FRCDQCGKAFSR 300
G S +H G KPY C C K F Q+ L H + D N + F C +CGK F+R
Sbjct: 1 GSSGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 301 KGHLVQHSFVHGGEKPFKCSYCPKAF 326
+ + +H+ G + +
Sbjct: 60 RNTMARHADNCAGPDGVEGENSGPSS 85
Score = 77.6 bits (192), Expect = 7e-18
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 359 HLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGG----VKPFACTVCNKSFLQKT 414
+ H G P+ C C K F K L+ H + + F C+ C K+F ++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 415 QLQNHLYTHSKVKPYNCGICAKSF 438
+ H + S
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 61.8 bits (151), Expect = 3e-12
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 388 LNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTH----SKVKPYNCGICAKSFVQRNT 443
+ H G KP+AC+ C+K+F QK L H + + C C K+F +RNT
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 444 YIKH 447
+H
Sbjct: 63 MARH 66
Score = 32.5 bits (75), Expect = 0.048
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 6/70 (8%)
Query: 135 HKCELCYKMFSDKLLYEKHKMVH------RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKL 188
+ C C K F K L + H + F C C ++F R H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 189 FSCNFCLKPF 198
Sbjct: 76 VEGENSGPSS 85
Score = 32.5 bits (75), Expect = 0.052
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 416 LQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 453
+ TH+ KPY C C K+F Q+ H + H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40
Score = 30.6 bits (70), Expect = 0.29
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH----KIAQLHKCELCYKMFSDKLLYEKHKMVH--RQV 160
+ C C + F + L +H + + C C K F+ + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 161 FTCEVCMRSF 170
E S
Sbjct: 76 VEGENSGPSS 85
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 85.8 bits (213), Expect = 1e-20
Identities = 36/101 (35%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 325 AFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC--LECSKCF 382
+ G E H C C K +T HLKAH H G P+ C C F
Sbjct: 2 SSGSSGPDLEKRRIH---YC-DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 383 STKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTH 423
+ EL RH + H G KPF C VCN+SF + L H+ H
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 84.2 bits (209), Expect = 4e-20
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 248 SHVQTSHRGIKPYVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRC--DQCGKAFSRKGH 303
+ + C+ C+K +T+ +LK HL H G ++C + C F+R
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDE 62
Query: 304 LVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
L +H H G KPF+C C ++FS HL H+ H
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 81.1 bits (201), Expect = 7e-19
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 289 FRCD--QCGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKC 344
CD C K +++ HL H H GEKP+KC++ C F+ L H H+ K
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 345 FQCKYCPKTFT----LRKHLKAHTN 365
FQC C ++F+ L H+K H N
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 72.3 bits (178), Expect = 8e-16
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 353 TFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSF 410
+ H P C+K ++ S L H + H G KP+ CT C+ F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 411 LQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHL 448
+ +L H H+ KP+ CG+C +SF + + H+
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 41.8 bits (99), Expect = 4e-05
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 157 HRQVFTCEV--CMRSFNDRKEFNEHIMKHEKEKLFSCNF--CLKPFLRKDLLEAHVNSVH 212
R++ C+ C + + H+ H EK + C + C F R D L H H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKH 70
Query: 213 KDVKKYNCEECDK 225
K + C C++
Sbjct: 71 TGAKPFQCGVCNR 83
Score = 38.8 bits (91), Expect = 4e-04
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 135 HKCEL--CYKMFSDKLLYEKHKMVH--RQVFTC--EVCMRSFNDRKEFNEHIMKHEKEKL 188
H C+ C K+++ + H H + + C E C F E H KH K
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 189 FSCNFCLKPFLRKDLLEAHV 208
F C C + F R D L H+
Sbjct: 76 FQCGVCNRSFSRSDHLALHM 95
Score = 32.2 bits (74), Expect = 0.10
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 107 FTC--EVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMF--SDKLLYEKHKMVH 157
+ C E C F R+ +L H H A+ +C +C + F SD L H H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL--ALHMKRH 98
Score = 31.1 bits (71), Expect = 0.22
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 107 FTCEV--CQQAFTRNADLKVHSMVHKIAQLHKC--ELCYKMF--SDKLLYEKHKMVHRQV 160
C+ C + +T+++ LK H H + +KC E C F SD+L +H H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL--TRHYRKHTGA 73
Query: 161 --FTCEVCMRSFNDRKEFNEHIMKHE 184
F C VC RSF+ H+ +H+
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQ 99
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 80.3 bits (199), Expect = 7e-19
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 244 GELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH-GDGNSLFRCDQCGKAFSRKG 302
G S +T H G KPY C IC FTQ +K H+L + + F C C +RK
Sbjct: 1 GSSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Query: 303 HLVQHS-FVHGGEKPF 317
L H H P
Sbjct: 60 DLGVHLRKQHSYSGPS 75
Score = 76.4 bits (189), Expect = 2e-17
Identities = 21/102 (20%), Positives = 30/102 (29%), Gaps = 27/102 (26%)
Query: 302 GHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLK 361
G H GEKP++C C F+ G + H+
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH--------------------- 39
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQ-IHGGVKPFA 402
E V C C + KS+L H + H P +
Sbjct: 40 -----TENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 71.0 bits (175), Expect = 1e-15
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 359 HLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGG--VKPFACTVCNKSFLQKTQL 416
+ H G P+ C C F+ + H V F C C+ +K+ L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 417 QNHL-YTHSKVKPY 429
HL HS P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 67.2 bits (165), Expect = 3e-14
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 388 LNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHS--KVKPYNCGICAKSFVQRNTYI 445
+ H G KP+ C +C+ F Q ++ H+ V ++C C +++
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 446 KHLEIVH 452
HL H
Sbjct: 63 VHLRKQH 69
Score = 40.6 bits (96), Expect = 6e-05
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 179 HIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVH--KDVKKYNCEECDKYYLSQGGVGCV 236
H EK + C C F + ++ H+ ++V K++C CD ++
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVI-AR------ 57
Query: 237 FLYYLSQGELDSHVQTSHRGIKPY 260
+ +L H++ H P
Sbjct: 58 ------KSDLGVHLRKQHSYSGPS 75
Score = 40.2 bits (95), Expect = 8e-05
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKH--EKEKLFSCNFCLKPFLRKDLLEAHVNSVH 212
+ C +C F HI++ E F C C RK L H+ H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 38.3 bits (90), Expect = 5e-04
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH--KIAQLHKCELCYKMFSDK 147
+ C +C FT++ +K+H + + C C + + K
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Score = 36.3 bits (85), Expect = 0.002
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 416 LQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 453
+ THS KPY C IC F Q T H+ H
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
Score = 28.6 bits (65), Expect = 1.2
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 107 FTCEVCQQAFTRNADLKVH 125
F C C R +DL VH
Sbjct: 46 FHCPHCDTVIARKSDLGVH 64
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 79.9 bits (198), Expect = 8e-19
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 254 HRGIKPYVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRCDQ--CGKAFSRKGHLVQHSF 309
G C+ C + F+ + L HH F C + CGK+F+ K HL +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 310 VHGGEKPFKCSYCPKAF 326
+H + + C + +
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 73.7 bits (182), Expect = 1e-16
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 29/103 (28%)
Query: 311 HGGEKPFKCSY--CPKAFSHKGHLNEHL-YTHSENKCFQCKYCPKTFTLRKHLKAHTNKH 367
G C + C + FS++ +LN H Y H K F C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEP----------------- 44
Query: 368 EGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSF 410
C K F+ K L H ++H + + C S
Sbjct: 45 ---------ACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 72.2 bits (178), Expect = 4e-16
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 367 HEGVLPHTC--LECSKCFSTKSELNRHAQI-HGGVKPFACT--VCNKSFLQKTQLQNHLY 421
G C C + FS + LN H + H K F+C C KSF K L+ H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 422 THSKVKPYNCGICAKSF 438
HS + Y C S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 47.2 bits (113), Expect = 3e-07
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 395 HGGVKPFACTV--CNKSFLQKTQLQNHL-YTHSKVKPYNC--GICAKSFVQRNTYIKHLE 449
G C C + F + L +H Y H K ++C C KSF + +H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 450 I 450
+
Sbjct: 62 L 62
Score = 39.5 bits (93), Expect = 2e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 183 HEKEKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCEE--CDKYYLSQGGVGCVFL 238
C+F C + F + L H H K ++C E C K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGK------------- 48
Query: 239 YYLSQGELDSHVQTSHRGIKPYVCEICSKAF 269
+ + L H++ H + Y+CE +
Sbjct: 49 SFNFKKHLKEHMKL-HSDTRDYICEFSGPSS 78
Score = 31.0 bits (71), Expect = 0.19
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 161 FTCE--VCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPF 198
F+C C +SFN +K EH+ H + + C F
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 30.6 bits (70), Expect = 0.21
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 107 FTCEV--CQQAFTRNADLKVHS-MVHKIAQLHKCE--LCYKMFSDKLLYEKHKMVHR--Q 159
C+ C + F+ L H H + C C K F+ K ++H +H +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 160 VFTCEVCMRSF 170
+ CE S
Sbjct: 68 DYICEFSGPSS 78
Score = 26.7 bits (60), Expect = 5.1
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 2/32 (6%)
Query: 423 HSKVKPYNCGI--CAKSFVQRNTYIKHLEIVH 452
S C C + F R H + H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 75.6 bits (187), Expect = 2e-17
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
+C +C + S K L H +H ++PFKC+YC +L++H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 68.3 bits (168), Expect = 7e-15
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 253 SHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHG 312
S P C CS + + + L+ H +H + F+C+ C + +L +H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 313 GEKPFKCS 320
G+ S
Sbjct: 62 GDMSGPSS 69
Score = 67.5 bits (166), Expect = 2e-14
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 366 KHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTH 423
P C ECS S+K+ L H +IH +PF C C+ Q + L H+
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 65.6 bits (161), Expect = 7e-14
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 310 VHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEG 369
P KCS C + S K L H H ++ F+C YC +L H K G
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 59.0 bits (144), Expect = 2e-11
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 395 HGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 453
P C+ C+ S K L+ H H +P+ C C+ Q + KH++ HG
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 31.7 bits (73), Expect = 0.073
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 422 THSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ S P C C+ S + H I
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERI 31
Score = 29.8 bits (68), Expect = 0.32
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 157
C C + + A L++H +H + KC C KH
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 29.0 bits (66), Expect = 0.77
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH 207
C C S + + H H ++ F CN+C + L H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 27.5 bits (62), Expect = 2.3
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 135 HKCELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEK 187
KC C S K H+ +H + F C C ++H+ K +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 73.7 bits (182), Expect = 8e-17
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 289 FRCDQCGKAFSRKGHLVQH--SFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
+RC C + ++ + +H + K + C +C K F+ K ++ H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 68.3 bits (168), Expect = 7e-15
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQI--HGGVKPFACTVCNKSFLQKTQLQNHLYTHS 424
EG + C CS+ ++ S RH VK + C C K F +K + H+
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 425 KV 426
K+
Sbjct: 65 KI 66
Score = 66.4 bits (163), Expect = 4e-14
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHL--YTHSENKCFQCKYCPKTFTLRKHLKAHTNKHE 368
GE ++C C + ++H + H K + C +C K FT + ++ AH
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 369 GV 370
+
Sbjct: 65 KI 66
Score = 59.5 bits (145), Expect = 9e-12
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 394 IHGGVKPFACTVCNKSFLQKTQLQNHL--YTHSKVKPYNCGICAKSFVQRNTYIKHLEIV 451
G + C VC++ + + H VK Y C C K F +++ H++I+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 452 HGV 454
H +
Sbjct: 64 HKI 66
Score = 47.9 bits (115), Expect = 1e-07
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 216 KKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTS-HRGIKPYVCEICSKAFTQQYN 274
Y C+ C + Y + H TS R +K Y C C K FT++ N
Sbjct: 9 HTYRCKVCSRVY-TH------------ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDN 55
Query: 275 LKHHLLLH 282
+ H+ +
Sbjct: 56 MTAHVKII 63
Score = 43.3 bits (103), Expect = 5e-06
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 161 FTCEVCMRSFNDRKEFNEH--IMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHK 213
+ C+VC R + F H K++ C FC K F RKD + AHV +HK
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 107 FTCEVCQQAFTRNADLKVH--SMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQV 160
+ C+VC + +T ++ H + + +++ C C+K F+ K H + ++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 74.0 bits (182), Expect = 1e-16
Identities = 17/76 (22%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Query: 254 HRGIKPYVCEICSKAFTQQYNLKHHLLLH--GDGNSLFRCDQCGKAFSRKGHLVQHSFVH 311
G CEIC Q+ +L H H F C+ CGK F + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 312 GGEKPFKCSYCPKAFS 327
S
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 73.6 bits (181), Expect = 1e-16
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVH---GGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCF 345
+C+ CG +K L H H F C +C K F + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 346 QCKYCPK 352
+
Sbjct: 68 APQESSG 74
Score = 68.2 bits (167), Expect = 1e-14
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHSEN---KCFQCKYCPKTFTLRKHLKAHTNKH 367
G +C C K LN H H+E F C++C K F + AH +K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 368 EGVLPHTCLECSK 380
L E S
Sbjct: 62 HPALLLAPQESSG 74
Score = 66.7 bits (163), Expect = 4e-14
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 4/71 (5%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIH---GGVKPFACTVCNKSFLQKTQLQNHLYT-HSKVK 427
C C K+ LN H + H F C C K F + + H H +
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 428 PYNCGICAKSF 438
S
Sbjct: 67 LAPQESSGPSS 77
Score = 63.6 bits (155), Expect = 5e-13
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 395 HGGVKPFACTVCNKSFLQKTQLQNHLYTHSKV---KPYNCGICAKSFVQRNTYIKHLEIV 451
G C +C + QK L H H++ + C C K F + ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 452 HG 453
H
Sbjct: 62 HP 63
Score = 51.6 bits (124), Expect = 8e-09
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 15/85 (17%)
Query: 216 KKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQ--TSHRGIKPYVCEICSKAFTQQY 273
CE C Q + L+ H + + CE C K F +
Sbjct: 6 SGLQCEICGFTC-RQ------------KASLNWHQRKHAETVAALRFPCEFCGKRFEKPD 52
Query: 274 NLKHHLLLHGDGNSLFRCDQCGKAF 298
++ H L + G +
Sbjct: 53 SVAAHRSKSHPALLLAPQESSGPSS 77
Score = 49.7 bits (119), Expect = 4e-08
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKH---EKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKK 217
CE+C + + N H KH F C FC K F + D + AH + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 218 YNCEEC 223
E
Sbjct: 68 APQESS 73
Score = 42.8 bits (101), Expect = 1e-05
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 135 HKCELCYKMFSDKLLYEKHKMVHRQV-----FTCEVCMRSFNDRKEFNEHIMKHEKEKLF 189
+CE+C K H+ H + F CE C + F H K L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 190 SCNFCLKP 197
+ P
Sbjct: 68 APQESSGP 75
Score = 31.6 bits (72), Expect = 0.11
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCE 138
F CE C + F + + H A L +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 72.5 bits (179), Expect = 2e-16
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEH 335
F C+ C +AF+R+ HL +H H EKP+ C C +AF+ + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 60.6 bits (148), Expect = 4e-12
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSF-VHGGEK 315
+ +VCE+C++AF +Q +LK H H + C C +AF+R+ L++H+ +H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH-TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 59.4 bits (145), Expect = 9e-12
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNH 419
C C++ F+ + L RH + H KP+ C +CN++F ++ L H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 57.5 bits (140), Expect = 4e-11
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 399 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVH 452
+ F C VC ++F ++ L+ H +H+ KPY CG+C ++F +R+ I+H + +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 55.2 bits (134), Expect = 3e-10
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 343 KCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQ-IHGG 397
+ F C+ C + F ++HLK H H P+ C C++ F+ + L RHAQ IH G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 39.0 bits (92), Expect = 1e-04
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 216 KKYNCEECDKYYLSQGGVGCVFLYYLSQGE-LDSHVQTSHRGIKPYVCEICSKAFTQQYN 274
+ + CE C + F ++ E L H SH KPY C +C++AFT++
Sbjct: 1 RSFVCEVCTR----------AF----ARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDL 45
Query: 275 LKHH 278
L H
Sbjct: 46 LIRH 49
Score = 39.0 bits (92), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVH 212
F CEVC R+F ++ H H EK + C C + F R+DLL H +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 29.8 bits (68), Expect = 0.27
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHK 154
F CEVC +AF R LK H H + + C LC + F+ + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 73.4 bits (181), Expect = 2e-16
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 288 LFRCD--QCGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENK 343
++ C CGKAF + L H F H + P++C + C K FS L H H+
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 344 CFQCKYCPKTFTLRKHLKAH 363
C + C H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 67.3 bits (165), Expect = 3e-14
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 343 KCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC--LECSKCFSTKSELNRHAQIHGGVKP 400
C + C K F LK H H LP+ C C K FS S L RH ++H G
Sbjct: 3 VC-HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 401 FACTVCNKSFLQKTQLQNH 419
C+ T H
Sbjct: 62 KKDDSCSFVGKTWTLYLKH 80
Score = 64.6 bits (158), Expect = 3e-13
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 260 YVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRCDQ--CGKAFSRKGHLVQHSFVHGGEK 315
YVC C KAF + LK H H + C C K FS L +H VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 316 PFKCSYCPKAFSHKGHLNEH 335
K C +H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 61.9 bits (151), Expect = 2e-12
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 374 TCLECSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSKVKPYNC 431
C K F ++L H H P+ C C+K F ++L+ H H+
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 432 GICAKSFVQRNTYIKHLEIVH 452
C+ Y+KH+ H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 34.9 bits (81), Expect = 0.008
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 108 TCEVCQQAFTRNADLKVHSMVHKIAQLHKC--ELCYKMFSDKLLYEKHKMVH--RQVFTC 163
E C +AF ++ LKVH H ++C E C K FS ++H+ VH
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 164 EVCMRSFNDRKEFNEHIMKHEK 185
+ C K + ++ +
Sbjct: 65 DSCSFVG---KTWTLYLKHVAE 83
Score = 29.9 bits (68), Expect = 0.48
Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 188 LFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNC--EECDKYYLSQGGVGCVFLYYLSQ 243
++ C+F C K F + + L+ H H Y C E CDK +
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPS------------ 47
Query: 244 GELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHH 278
L H + H G + CS H
Sbjct: 48 -RLKRHEKV-HAGYPCKKDDSCSFVGKTWTLYLKH 80
Score = 29.9 bits (68), Expect = 0.49
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 107 FTC--EVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKM 155
+ C E C + F+ + LK H VH K + C + LY KH
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 72.5 bits (179), Expect = 3e-16
Identities = 28/57 (49%), Positives = 32/57 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCF 345
+ C +CGKAFSR LVQH VH GEKP+KC C KAFS L H H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 68.3 bits (168), Expect = 9e-15
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 251 QTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFV 310
H G KPY C C KAF++ L H +H G ++C +CGKAFS+ L+ H +
Sbjct: 6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 311 HGGEKPF 317
H
Sbjct: 65 HTSGPSS 71
Score = 67.5 bits (166), Expect = 2e-14
Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 304 LVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAH 363
S +H GEKP+ C C KAFS L +H H+ K ++C
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL--------------- 46
Query: 364 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFA 402
EC K FS S L H +IH
Sbjct: 47 -------------ECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 66.0 bits (162), Expect = 6e-14
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 356 LRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQ 415
H+ G P+ C+EC K FS S L +H ++H G KP+ C C K+F Q +
Sbjct: 2 SSGSSGIHS----GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSG 57
Query: 416 LQNHLYTHSKVKPY 429
L NH H+
Sbjct: 58 LINHQRIHTSGPSS 71
Score = 59.8 bits (146), Expect = 9e-12
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 388 LNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + IH G KP+ C C K+F + + L H H+ KPY C C K+F Q + I H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 448 LEI 450
I
Sbjct: 62 QRI 64
Score = 30.5 bits (70), Expect = 0.22
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 157
+ C C +AF+R++ L H VH + +KC C K FS H+ +H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 26.7 bits (60), Expect = 4.7
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH 207
+ C C ++F+ +H H EK + C C K F + L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 72.1 bits (178), Expect = 4e-16
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
++CD+C +F KG+L H VH GEKP++C+ C F+ +L H H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 70.2 bits (173), Expect = 2e-15
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 28/99 (28%)
Query: 303 HLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKA 362
H HS + +KP+KC C +F +KG+L H H+ K
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK------------------- 44
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPF 401
P+ C C F+ + L H +IH G KP+
Sbjct: 45 ---------PYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 70.2 bits (173), Expect = 2e-15
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 246 LDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLV 305
H KPY C+ C +F + NL H +H G +RC+ CG F+R +L
Sbjct: 5 HHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRPANLK 62
Query: 306 QHSFVHGGEKPF 317
H+ +H GEKP+
Sbjct: 63 THTRIHSGEKPY 74
Score = 69.0 bits (170), Expect = 6e-15
Identities = 23/71 (32%), Positives = 31/71 (43%)
Query: 359 HLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQN 418
H H++ P+ C C F K L H +H G KP+ C +C F + L+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 419 HLYTHSKVKPY 429
H HS KPY
Sbjct: 64 HTRIHSGEKPY 74
Score = 61.3 bits (150), Expect = 3e-12
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 386 SELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYI 445
+ H+ + KP+ C C SF K L +H H+ KPY C IC F +
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 446 KH 447
H
Sbjct: 63 TH 64
Score = 32.8 bits (76), Expect = 0.030
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 157
+ C+ CQ +F +L H VH + ++C +C F+ + H +H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 29.0 bits (66), Expect = 0.85
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH 207
+ C+ C SF + H H EK + CN C F R L+ H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 26.6 bits (60), Expect = 5.3
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 135 HKCELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEK 187
+KC+ C F K HK VH + + C +C FN H H EK
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 71.7 bits (177), Expect = 7e-16
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
++CD+CGK+FS L +H H GEKP+KC C KAF + HL H H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 71.7 bits (177), Expect = 7e-16
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 246 LDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLV 305
+ R + Y C+ C K+F+ +L H H G ++CD+CGKAF ++ HL+
Sbjct: 6 SGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLI 63
Query: 306 QHSFVHGGEKPFK 318
H VH G P
Sbjct: 64 GHHRVHTGSGPSS 76
Score = 69.0 bits (170), Expect = 7e-15
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 28/101 (27%)
Query: 301 KGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHL 360
G + + + +KC C K+FSH L++H TH+ K
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEK----------------- 45
Query: 361 KAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPF 401
P+ C EC K F +S L H ++H G P
Sbjct: 46 -----------PYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 65.5 bits (161), Expect = 9e-14
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 355 TLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKT 414
+ + + C EC K FS S+L++H + H G KP+ C C K+F+Q++
Sbjct: 5 SSGRSEWQQR----ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 415 QLQNHLYTHSKVKPY 429
L H H+ P
Sbjct: 61 HLIGHHRVHTGSGPS 75
Score = 60.9 bits (149), Expect = 4e-12
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 385 KSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTY 444
R + + C C KSF + L H TH+ KPY C C K+F+QR+
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 445 IKH 447
I H
Sbjct: 63 IGH 65
Score = 34.7 bits (81), Expect = 0.006
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 412 QKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + Y C C KSF + KH
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 30.5 bits (70), Expect = 0.24
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 157
+ C+ C ++F+ ++DL H H + +KC+ C K F + H VH
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 27.4 bits (62), Expect = 2.8
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 183 HEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDK 225
+ + + C+ C K F L H H K Y C+EC K
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGK 54
Score = 26.3 bits (59), Expect = 6.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH 207
+ C+ C +SF+ + ++H H EK + C+ C K F+++ L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 70.6 bits (172), Expect = 6e-15
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 299 SRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHL-----YTHSENKCFQCKYCPKT 353
S + + G F+C C A+ L H+ Y ++ +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 354 FTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRH 391
++ L K + C+ C F + +L+ H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 59.0 bits (142), Expect = 6e-11
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 254 HRGIKPYVCEICSKAFTQQYNLKHHLLLHG----DGNSLFRCDQCGKAFSRKGHLVQHSF 309
G + C+ CS A+ L H+ G D + + + RK L++
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG 73
Query: 310 VHGGEKPFKCSYCPKAFSHKGHLNEHL 336
+K KC YC +F L+ H+
Sbjct: 74 KEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 55.9 bits (134), Expect = 6e-10
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 270 TQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQH-----SFVHGGEKPFKCSYCPK 324
+ + K + + G S FRC C A+ L H + + +
Sbjct: 2 SSGSSGKLYGSIF-TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 325 AFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKH 367
+ K L E K +C YC +F + L H K
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 55.5 bits (133), Expect = 1e-09
Identities = 19/95 (20%), Positives = 26/95 (27%), Gaps = 5/95 (5%)
Query: 359 HLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHG-----GVKPFACTVCNKSFLQK 413
K + + G C +CS + T EL H G + S +K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 414 TQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHL 448
L K C C SF H+
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 42.8 bits (100), Expect = 3e-05
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 105 QVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH------- 157
F C+ C A+ +L VH M + + + +
Sbjct: 18 SKFRCKDCSAAYDTLVELTVH-MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 158 -RQVFTCEVCMRSFNDRKEFNEHIMKH 183
++V C C SF ++ + H++K
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 41.7 bits (97), Expect = 6e-05
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 383 STKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHL-----YTHSKVKPYNCGICAKS 437
S+ S + I G F C C+ ++ +L H+ Y + N S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 438 FVQRNTYIKHLEIVHG 453
++ + ++
Sbjct: 62 KPRKRSLLEMEGKEDA 77
Score = 39.4 bits (91), Expect = 5e-04
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 10/101 (9%)
Query: 179 HIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFL 238
+ F C C + L H+N + + E D
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGH--YRDDNHETDN--------NNPKR 59
Query: 239 YYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHL 279
+ + ++ K C C +F +L H+
Sbjct: 60 WSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 38.6 bits (89), Expect = 8e-04
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 117 TRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH-------RQVFTCEVCMRS 169
+ + K++ + A +C+ C + + H + S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 170 FNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH 207
++ E K + +K+ C +C F L H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 65.0 bits (159), Expect = 1e-13
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 359 HLKAHTNKHEGVLPHTC--LECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQL 416
+L + P+ C C + FS EL RH +IH G KPF C +C ++F + L
Sbjct: 8 NLLNYVVPKMR--PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 417 QNHLYTHS 424
H+ TH+
Sbjct: 66 TTHIRTHT 73
Score = 62.7 bits (153), Expect = 1e-12
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 289 FRCD--QCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHS 340
+ C C + FSR L +H +H G+KPF+C C + FS HL H+ TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 60.8 bits (148), Expect = 4e-12
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 298 FSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFT 355
+L+ + V +P+ C C + FS L H+ H+ K FQC+ C + F+
Sbjct: 3 PHPMNNLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 356 LRKHLKAHTNKH 367
HL H H
Sbjct: 61 RSDHLTTHIRTH 72
Score = 52.7 bits (127), Expect = 3e-09
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 389 NRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIK 446
N + ++P+AC V C++ F + +L H+ H+ KP+ C IC ++F + +
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 447 HL 448
H+
Sbjct: 68 HI 69
Score = 51.9 bits (125), Expect = 6e-09
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 326 FSHKGHLNEHLYTHSENKCFQCKY--CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFS 383
+L ++ + + C C + F+ L H H G P C C + FS
Sbjct: 3 PHPMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 384 TKSELNRHAQIH 395
L H + H
Sbjct: 61 RSDHLTTHIRTH 72
Score = 40.8 bits (96), Expect = 5e-05
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 244 GELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 282
EL H++ H G KP+ C IC + F++ +L H+ H
Sbjct: 35 DELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.1 bits (89), Expect = 4e-04
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 153 HKMVHRQVFTC--EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHV 208
+ + + + C E C R F+ E HI H +K F C C++ F R D L H+
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 33.0 bits (76), Expect = 0.029
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 179 HIMKHEKEKLFSCN--FCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDK 225
+++ + ++C C + F R D L H+ +H K + C C +
Sbjct: 12 YVVPKMRP--YACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMR 57
Score = 29.6 bits (67), Expect = 0.48
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 107 FTC--EVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMF--SDKLLYEKHKMVH 157
+ C E C + F+R+ +L H +H + +C +C + F SD L H H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL--TTHIRTH 72
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 63.8 bits (156), Expect = 2e-13
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 289 FRCDQCGKAFSRKGHLVQHS-FVHGGEKPFKCSYCPKAFS 327
+ C CGK FSR HL H VH E+P KC S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 57.6 bits (140), Expect = 3e-11
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHL-YTHSENKCFQCKYCPKTFT 355
KP+ C C K FS HLN H+ H+ + +C+ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 54.5 bits (132), Expect = 5e-10
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQ-IHGGVKPFACTVCNKSF 410
+ + P+ C C K FS LN H + +H +P C V
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 52.2 bits (126), Expect = 3e-09
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHL-YTHSKVKPYNCGICAKSF 438
KP+ C C K F + L H+ H+ +P+ C +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 338 THSENKCFQCKYCPKTFTLRKHLKAHTNK-HEGVLPHTCLECSKCFST 384
+ S K + C+ C K F+ HL H + H PH C S+
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 43.0 bits (102), Expect = 5e-06
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 15/64 (23%)
Query: 209 NSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGE-LDSHVQTSHRGIKPYVCEICSK 267
S K Y C+ C K + S+ + L+ H++ H +P+ C++
Sbjct: 4 GSSGSVGKPYICQSCGKGF--------------SRPDHLNGHIKQVHTSERPHKCQVWVS 49
Query: 268 AFTQ 271
+
Sbjct: 50 GPSS 53
Score = 39.9 bits (94), Expect = 5e-05
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 183 HEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDK 225
K + C C K F R D L H+ VH + + C+
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 422 THSKVKPYNCGICAKSFVQRNTYIKHLEIVH 452
+ S KPY C C K F + + H++ VH
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 34.1 bits (79), Expect = 0.006
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 107 FTCEVCQQAFTRNADLKVHS-MVHKIAQLHKCELCYKMFSD 146
+ C+ C + F+R L H VH + HKC++ S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 28.3 bits (64), Expect = 0.83
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMK-HEKEKLFSCNFCLKPF 198
+ C+ C + F+ N HI + H E+ C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 59.7 bits (144), Expect = 7e-12
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 343
+ C++CG + L +H H +P+ C+YC +F KG+L +H+ + + +K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 52.8 bits (126), Expect = 2e-09
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 260 YVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 315
Y+CE C + LK H+ H + C C +F KG+L +H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTH-TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 49.3 bits (117), Expect = 3e-08
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 373 HTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVK 427
+ C EC S L +H + H V+P+ CT CN SF K L H+ + + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.5 bits (107), Expect = 6e-07
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 345 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVK 399
+ C+ C LK H H V P+ C C+ F TK L +H + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.5 bits (107), Expect = 8e-07
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 317 FKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEG 369
+ C C L +H+ TH++ + + C YC +F + +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 41.2 bits (96), Expect = 2e-05
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 403 CTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 453
C C + + L+ H+ TH+ V+PY+C C SF + KH++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 37.0 bits (85), Expect = 8e-04
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
Query: 217 KYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLK 276
KY CEEC L H++T H ++PY C C+ +F + NL
Sbjct: 1 KYICEECGIRXKKPS-------------MLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLT 46
Query: 277 HHLLLH 282
H+
Sbjct: 47 KHMKSK 52
Score = 30.8 bits (69), Expect = 0.10
Identities = 13/51 (25%), Positives = 18/51 (35%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 157
+ CE C + + LK H H + + C C F K KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 30.5 bits (68), Expect = 0.14
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNS 210
+ CE C +HI H + + C +C F K L H+ S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 60.0 bits (145), Expect = 1e-11
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 254 HRGIKPYVCEICSKAFTQQYNLKHHLL---LHGDGNSLFRC-----DQCGKAFSRKGHLV 305
+ C + F+ + L H+ + G + C + GK+F K LV
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 306 QHSFVHGGEKPFKCS 320
H VH GEK S
Sbjct: 80 NHIRVHTGEKSGPSS 94
Score = 55.4 bits (133), Expect = 7e-10
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQ-IHGGVKPFA--------CTVCNKSFLQKTQLQ 417
E L C + FST EL H H G C KSF K +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 418 NHLYTHSKVKPYNC 431
NH+ H+ K
Sbjct: 80 NHIRVHTGEKSGPS 93
Score = 50.7 bits (121), Expect = 3e-08
Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 21/96 (21%)
Query: 310 VHGGEKPFKCSYCPKAFSHKGHLNEHLY-THSENKCFQCKYCPKTFTLRKHLKAHTNKHE 368
+ + C + FS L H+ H C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW---------------- 62
Query: 369 GVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
C K F K +L H ++H G K +
Sbjct: 63 ----EECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 38.4 bits (89), Expect = 6e-04
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 394 IHGGVKPFACTVCNKSFLQKTQLQNHLY-THSKVKPY--------NCGICAKSFVQRNTY 444
I C+++F +L H+ H C KSF +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 445 IKHL 448
+ H+
Sbjct: 79 VNHI 82
Score = 37.3 bits (86), Expect = 0.001
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 183 HEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLS 242
E + C + F L HV H + N C + G Y L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 243 QGELDSHVQTSHRGIKPYVC 262
+H++ H G K
Sbjct: 80 -----NHIRV-HTGEKSGPS 93
Score = 28.4 bits (63), Expect = 2.1
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 19/86 (22%)
Query: 107 FTCEVCQQAFTRNADLKVH-SMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQVFTCEV 165
+ C + F+ +L H +M H +CY C
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW------------------EECPR 67
Query: 166 CMRSFNDRKEFNEHIMKHEKEKLFSC 191
+SF + + HI H EK
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 27.2 bits (60), Expect = 4.4
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 422 THSKVKPYNCGICAKSFVQRNTYIKHLEIVH 452
C ++F + + H+ + H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C++CGK F R HL++H H EK S
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 51.4 bits (124), Expect = 4e-09
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE+P+ C+ C K F HL EHL H K
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G +P+ C C K+F + + L HL H + K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C EC K F S L H + H K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 31.3 bits (72), Expect = 0.060
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ S +PY C C K+F + + I+HL+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 55.5 bits (134), Expect = 3e-10
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 329 KGHLNEHLYTHSENKCFQCKY--CPKTFTLRKHLKAHTNKHEGVLPHTC--LECSKCFST 384
+ S + C + C KT+ HLKAHT H G P +C C + F+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 385 KSELNRHAQIH 395
EL+RH + H
Sbjct: 62 SDELSRHRRTH 72
Score = 53.5 bits (129), Expect = 1e-09
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 357 RKHLKAHTNKHEGVLPHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQ 412
+ H C C K + S L H + H G KPF+C+ C + F +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 413 KTQLQNHLYTH 423
+L H TH
Sbjct: 62 SDELSRHRRTH 72
Score = 53.2 bits (128), Expect = 2e-09
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 29/91 (31%)
Query: 251 QTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFV 310
Q I+ ++C CGK + + HL H+
Sbjct: 9 QIDSSRIRSHICSH---------------------------PGCGKTYFKSSHLKAHTRT 41
Query: 311 HGGEKPFKCSY--CPKAFSHKGHLNEHLYTH 339
H GEKPF CS+ C + F+ L+ H TH
Sbjct: 42 HTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 50.5 bits (121), Expect = 2e-08
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 301 KGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKY--CPKTFTL 356
+ CS+ C K + HL H TH+ K F C + C + F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 357 RKHLKAHTNKH 367
L H H
Sbjct: 62 SDELSRHRRTH 72
Score = 42.8 bits (101), Expect = 8e-06
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 385 KSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSKVKPYNCGI--CAKSF 438
S + ++ C+ C K++ + + L+ H TH+ KP++C C + F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59
Score = 27.7 bits (62), Expect = 2.0
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 161 FTCEV--CMRSFNDRKEFNEHIMKHEKEKLFSCNF--CLKPFLRKDLLEAH 207
C C +++ H H EK FSC++ C + F R D L H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 54.5 bits (132), Expect = 4e-10
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F C C KAFS K +L+ H H EKP S
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 51.0 bits (123), Expect = 5e-09
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 310 VHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPF CS C KAFS K +L H TH+E K
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 394 IHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C+ C K+F K+ L H TH++ KP
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
G P C C K FS+KS L H Q H KP +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 31.4 bits (72), Expect = 0.055
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 338 THSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
S K F C C K F+ + +L H H P
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 29.8 bits (68), Expect = 0.19
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 422 THSKVKPYNCGICAKSFVQRNTYIKH 447
S KP+ C C K+F ++ + H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 24.8 bits (55), Expect = 10.0
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 14/54 (25%)
Query: 209 NSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVC 262
+S K + C C+K + S + L H Q +H KP
Sbjct: 2 SSGSSGEKPFGCSCCEKAF-SS------------KSYLLVH-QQTHAEEKPSGP 41
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 7e-10
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C++CGK F R+ HL H +H EK S
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE+PFKC+ C K F + HL HL HS K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G +PF C C K F +++ L HL HS+ K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P C EC K F +S L H ++H K +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 31.4 bits (72), Expect = 0.063
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ S +P+ C C K F +R+ HL +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 8e-10
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C +CGK+++++ HL QH VH GEKP S
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C C KS+ Q+ L H H+ KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPFKC C K+++ + HL +H H+ K
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P C EC K ++ + L +H ++H G KP +
Sbjct: 2 SSGSSGT----GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.16
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KP+ CG C KS+ QR +H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 9e-10
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+CD CGK+F + L +HS VH EKP S
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPFKC C K+F + LN H H+ K
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C +C KSF +++L H H+ KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C C K F +S LNRH+ +H KP +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.013
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KP+ C IC KSF R+ +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K F+C C K+F R L H+ H P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 25.5 bits (57), Expect = 6.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
F C++C ++F + L HSMVH
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-09
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+C++CGK+F + HL+QH +H GEKP S
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE+P KC+ C K+F HL +H H+ K
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G +P C C KSF+Q L H H+ KP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G PH C EC K F + L +H +IH G KP +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + +P+ C C KSF+Q I+H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-09
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F C +C KAF+ K +L+ H H GEKP S
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPF+CS C KAF+ K +L H TH+ K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C+ C K+F K+ L H TH+ KP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 3e-07
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C EC K F+TKS L H + H G KP +
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.025
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KP+ C C K+F ++ I H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-09
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++CD CGK FS+ HL H VH GEKP S
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEK +KC C K FS HL H H+ K
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G K + C VC K F Q + LQ H H+ KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G + C C K FS S L H ++H G KP +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.021
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ KC++C C K F+ HL+ H H G P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.28
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ K Y C +C K F Q + H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-09
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGK+FSR L++H +H GEKP S
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G + C EC K FS L +H ++H G KP +
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEK + C C K+FS L +H HS K
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G K + C C KSF + L H HS KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.020
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + K YNC C KSF + +KH
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 30.2 bits (69), Expect = 0.16
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K + CK C K+F+ L H H G P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGKAFSRK L+ H H GEKP S
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE P++C C KAFS K L H TH+ K
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G P+ C C K+F +K QL +H TH+ KP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C EC K FS K +L H + H G KP +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.095
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + PY C C K+F ++ I H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGKAF+RK L+ H +H GEKP S
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE+ ++CS C KAF+ K L H H+ K
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 6e-07
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G + + C+ C K+F +K+ L H H+ KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G + C EC K F+ KS L H +IH G KP +
Sbjct: 2 SSGSSGT----GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.044
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + Y C C K+F +++T I H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 30.2 bits (69), Expect = 0.16
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 334 EHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + + ++C C K F + L H H G P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C++CGK F++ HL H VH GEKP S
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPF+C C K F+ HL+ H H+ K
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C C K F Q + L +H H+ KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P C EC K F+ S L+ H ++H G KP +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 334 EHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K FQC+ C K FT HL +H H G P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ S KP+ C C K F Q + H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F C +CGKAF+RK L H +H GEKP S
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G K F+C+ C KAF+ K L+ H H+ K
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G C EC K F+ KS L+ H +IH G KP +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 8e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G K F CT C K+F +K+ L H H+ KP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.11
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + K + C C K+F +++T H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 30.6 bits (70), Expect = 0.11
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K F+C C K FT + L H H G P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C +CGK FSR+ L H +H GEKP S
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPFKC C K FS + LN H H+ K
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C+EC K FS +S LN H ++H G KP +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C C K F +++ L H H+ KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.070
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KP+ C C K F +R+ H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C +CGKAF + HL H +H GEKP S
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPFKC C KAF HL HL H+ K
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C C K+F Q L +HL H+ KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C EC K F L H +IH G KP +
Sbjct: 2 SSGSSGS----GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.011
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K F+CK C K F HL +H H G P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.26
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ S KP+ C C K+F Q HL I
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGKAFS+ HL+QH VH GEKP S
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++C C KAFS HL +H H+ K
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F Q T L H H+ KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 8e-06
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C EC K FS + L +H ++H G KP +
Sbjct: 2 SSGSSGT----GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.056
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++CK C K F+ HL H H G P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.17
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K+F Q I+H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+RC +CGKAF++K +L QH +H GEKP S
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++C C KAF+ K +L +H H+ K
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F QK L H H+ KP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F+ K+ L +H +IH G KP +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.063
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY CG C K+F Q+ +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F C +CGK F+ K +L+ H +H GE+P S
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 48.6 bits (117), Expect = 4e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE PF CS C K F+HK +L H H+ +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C EC K F+ K+ L H +IH G +P +
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G PF C+ C K F KT L H H+ +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 32.1 bits (74), Expect = 0.026
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + P+ C C K F + I H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 30.2 bits (69), Expect = 0.14
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + F C C K FT + +L H H G P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F C CGK+F KG+LV H +H GEK S
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G+KPF+C++C K+F KG+L H H+ K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF CT C KSF K L H H+ K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C C K F K L H +IH G K +
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 31.7 bits (73), Expect = 0.038
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K F+C +C K+F + +L H H G
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 31.4 bits (72), Expect = 0.049
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KP+ C C KSF + + H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C QC K+FS K L+ H +H EKP S
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G P+KCS C K+FS K L H H+ K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + GV P+ C +C K FS K L H ++H KP +
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
GV P+ C+ C KSF K +L H H++ KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 32.1 bits (74), Expect = 0.032
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + V PY C C KSF + + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 31.0 bits (71), Expect = 0.069
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + ++C C K+F+ + L H H P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 25.2 bits (56), Expect = 9.4
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 210 SVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVC 262
S V Y C +C+K + S + L H Q H KP
Sbjct: 5 SSGAGVNPYKCSQCEKSF-SG------------KLRLLVH-QRMHTREKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +C K F + GHL QH VH GE+ S
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
G+KP++C C K F GHLN+H H+ +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 46.0 bits (110), Expect = 3e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F+Q L H H+ +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ + G P+ C EC K F LN+H ++H G +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLE 377
+ S K ++CK C KTF HL H H G
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 32.5 bits (75), Expect = 0.022
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ S KPY C C K+F+Q +H +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C+ CGKAF HL QH VH E S
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
GEKP+ C+ C KAF HLN+HL H++
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP++C VC K+F+ L HL H++
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P++C C K F + LN+H ++H +
Sbjct: 2 SSGSSGT----GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 32.5 bits (75), Expect = 0.019
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 334 EHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K + C C K F L HL H H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 29.4 bits (67), Expect = 0.24
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ + + KPY+C +C K+FV +HL +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV 34
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C+ CGK ++R+ +L H VH GEK S
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
EKP+KC C K ++ + +L+ H H K
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 46.3 bits (111), Expect = 3e-07
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
KP+ C C K + ++ L H H K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + P+ C +C K ++ + L+ H ++H G K +
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 32.1 bits (74), Expect = 0.031
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + S KPY C C K + +R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 30.9 bits (71), Expect = 0.089
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K ++C+ C K + R +L H H G
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 25.9 bits (58), Expect = 5.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
+ CE C + + R +L +H VH
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F C +CGK+FS L H +H GEKP S
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 3e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPF+C+ C K+FS L H H+ K
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 3e-07
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C C KSF +QL H H+ KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P C EC K FS S+L H +IH G KP +
Sbjct: 2 SSGSSGT----GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.095
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K F+C C K+F++ L H H G P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.15
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KP+ C C KSF + H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C +CGK + R+ L H VH GEK S
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC C K + + L+ H H+ K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K + ++ L H H+ K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C+EC K + + +L+ H ++H G K +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 31.3 bits (72), Expect = 0.047
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K ++C C K + R L H H G
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 31.3 bits (72), Expect = 0.061
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + S KPY C C K + +R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C +CGKAF R HL +H +H G +P S
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 48.6 bits (117), Expect = 3e-08
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KCS C KAF HLNEH H+ +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C+ C K+F + T L H H+ +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C EC K F + LN H +IH G +P +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 29.0 bits (66), Expect = 0.36
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ S KPY C C K+F + +H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C +CGK F R HL +H +H GEKP S
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 45.9 bits (110), Expect = 3e-07
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC C K F HL H H+ K
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.5 bits (109), Expect = 5e-07
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F + + L H H+ KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F S L RH IH G KP +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.97
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K F + + +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK FSR L QH +H GEKP S
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEK +KC+ C K FS L++H H+ K
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G K + C C K F + +QL H H+ KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G + C EC K FS S+L++H +IH G KP +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.74
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ + K Y C C K F + + +H +I
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI 34
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C CGKAF HLVQH VH GE+P S
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC C KAF HL +H HS +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C VC K+F + L H HS +P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C C K F S L +H +H G +P +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 31.7 bits (73), Expect = 0.045
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 334 EHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C+ C K F + HL H + H G P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 28.6 bits (65), Expect = 0.52
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C +C K+F + ++H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK F++ HL H +H GEKP S
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F Q + L NH H+ KP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C K F+ HL H H+ K
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F+ S L H +IH G KP +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.10
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ + S KPY C C K F Q + H I
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 52.1 bits (126), Expect = 2e-09
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
S GGEKP+ C C F H L HL H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 45.6 bits (109), Expect = 5e-07
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 429
+ GG KP+ C +C F L++HL H+ P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 44.4 bits (106), Expect = 1e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 251 QTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 282
S G KPY CEIC F LK HL +H
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 44.0 bits (105), Expect = 1e-06
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPF 317
+ C+ CG F L H +H G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 42.9 bits (102), Expect = 5e-06
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFA 402
+ G P+ C C F L H +IH G P +
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 32.1 bits (74), Expect = 0.023
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ KPY C IC F T HL I
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 30.5 bits (70), Expect = 0.087
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHT 374
+ K + C+ C F + LK+H H G P +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 28.2 bits (64), Expect = 0.67
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
+ CE+C F LK H +H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C++CGK+F +K HL +H +H GEKP S
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+ C+ C K+F K HLN H H+ K
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C KSF+QK+ L H H+ KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C EC K F KS LNRH +IH G KP +
Sbjct: 2 SSGSSGT----GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.18
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C KSF+Q++ +H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK F++ HL H +H G KP S
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F Q + L NH H+ VKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C K F+ HL H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C EC K F+ S L H +IH GVKP +
Sbjct: 2 SSGSSGT----GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 29.8 bits (68), Expect = 0.23
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K F Q + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ CD CGKAF LV+H +H GEKP S
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+ C YC KAF L H H+ K
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F +L H H+ KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C C K F +EL RH +IH G KP +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.062
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K + C YC K F L L H H G P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.13
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ S KPY C C K+F ++H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+RC +CGKAF+ + +L H +H GEKP S
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 3e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++C+ C KAF+ + +L H H+ K
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F ++ L H H+ KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ + G P+ C EC K F+ +S L H +IH G KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.026
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K+F R+ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 30.2 bits (69), Expect = 0.15
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C C K FT R +L H H G P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 2e-09
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C +CGK+FS L QH H EKP S
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++CS C K+FS L +H TH+ K
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + EG P+ C EC K FS L +H H KP +
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C+ C KSF +L H TH++ KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 32.9 bits (76), Expect = 0.017
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ KPY C C KSF +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 31.4 bits (72), Expect = 0.051
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ K +QC C K+F+ L H H P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-09
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C++CGK F++ L H VH GEKP S
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C C K F Q +QL +H H+ KP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPFKC C K F+ L+ H H+ K
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P C EC K F+ S+L+ H ++H G KP +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.052
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + S KP+ C C K F Q + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 31.3 bits (72), Expect = 0.055
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K F+C+ C K FT L +H H G P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-09
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK F++ HLV+H +H GEKP S
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F Q + L H H+ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 45.5 bits (109), Expect = 5e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C K F+ HL H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 43.2 bits (103), Expect = 3e-06
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F+ S L RH IH G KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 30.1 bits (69), Expect = 0.16
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C K F Q + ++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 52.7 bits (126), Expect = 3e-09
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 242 SQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRK 301
S G Q H G + C C F ++ L C++C K ++
Sbjct: 2 SSGSSGKR-QKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQE 52
Query: 302 GHLVQHSFVHGGEKPF 317
L + G+K
Sbjct: 53 AALNKDEGNESGKKTS 68
Score = 50.8 bits (121), Expect = 1e-08
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 300 RKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKH 359
G + +H G++ KCS C F + L+ K C+ C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAA 54
Query: 360 LKAHTNKHEG 369
L G
Sbjct: 55 LNKDEGNESG 64
Score = 50.0 bits (119), Expect = 2e-08
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 384 TKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNT 443
+ + +IH G + C+ C F++++ T S+ K C C K Q
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRS-------TLSRRKTPMCEKCRKDSCQEAA 54
Query: 444 YIKHLEI 450
K
Sbjct: 55 LNKDEGN 61
Score = 48.1 bits (114), Expect = 1e-07
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 274 NLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLN 333
+ +H G+ +C +CG F R+ L + K C C K + LN
Sbjct: 5 SSGKRQKIH-LGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 334 EHLYTHSENK 343
+ S K
Sbjct: 57 KDEGNESGKK 66
Score = 46.6 bits (110), Expect = 4e-07
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 359 HLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQN 418
H G C +C F +S L+R K C C K Q+ L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 419 HLYTHSKVKPY 429
S K
Sbjct: 58 DEGNESGKKTS 68
Score = 35.8 bits (82), Expect = 0.003
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 118 RNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQVFTCEVCMRSFNDRKEFN 177
+ +H + KC C +F + + K CE C + N
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK-----TPMCEKCRKDSCQEAALN 56
Query: 178 EHIMKHEKEK 187
+ +K
Sbjct: 57 KDEGNESGKK 66
Score = 28.5 bits (63), Expect = 1.1
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 175 EFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDK 225
+ H ++ C+ C F+R+ S K CE+C K
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRR--------STLSRRKTPMCEKCRK 47
Score = 28.5 bits (63), Expect = 1.2
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 157
C C F R + L + CE C K + K +
Sbjct: 19 QKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 27.7 bits (61), Expect = 2.0
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 9/58 (15%)
Query: 152 KHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH 207
K + +H + C C F + K C C K ++ L
Sbjct: 8 KRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 3e-09
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C C KAF++K HL QH H GEKP S
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
GEKP++C C KAF+ K HL +H TH+ K
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C VC+K+F QK L H TH+ KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C CSK F+ K+ L +H + H G KP +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLE 377
+ + K ++CK C K FT + HL H H G P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.094
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C +C+K+F Q+ +H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 3e-09
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGKAF+ + +L++H +H +KP S
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+ C+ C KAF+ + +L +H H++ K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F+ +S L +H +IH KP +
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 44.8 bits (107), Expect = 8e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F ++ L H H+K KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 32.5 bits (75), Expect = 0.022
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C K+F R+ IKH
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 30.6 bits (70), Expect = 0.090
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K + C C K FT+R +L H H P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 3e-09
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F C CGKAFS L QH +H GEKP S
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPF C C KAFS LN+H H+ K
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C C K+F L H H+ KP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C++C K FS LN+H +IH G KP +
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KP++C C K+F +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 30.2 bits (69), Expect = 0.16
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K F C C K F+ L H H G P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 3e-09
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGKAFS K +L+ H H GEKP S
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+ CS C KAFS K +L H+ THS K
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C+ C K+F K+ L H+ THS KP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K FS+KS L H + H G KP +
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 31.8 bits (73), Expect = 0.036
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K + C C K F+ + +L H H G P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 31.8 bits (73), Expect = 0.041
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C K+F ++ I H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 3e-09
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGKAF K L+ H H GEKP S
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
G++P++C C KAF K L H +H+ K
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G +P+ C C K+F K+ L H +H+ KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C+EC K F TKS L H + H G KP +
Sbjct: 2 SSGSSGT----GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.074
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + +PY C C K+F +++ I H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLE 377
+ + + ++C C K F + L H H G P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 3e-09
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ CD C KAFS L QH VH GEKP S
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 49.0 bits (118), Expect = 3e-08
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++C C KAFSH L +H HS K
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C VC K+F L H HS KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C C K FS + L +H ++H G KP +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.12
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C +C K+F + +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK ++ K +L H VH GE+P S
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC C K ++ K +L+ H H+ +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K + K L H H+ +P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C +C K +++K L+ H ++H G +P +
Sbjct: 2 SSGSSGT----GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 29.8 bits (68), Expect = 0.22
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K + + H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 28.3 bits (64), Expect = 0.64
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C+ C K + + +L H H G P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 51.4 bits (124), Expect = 3e-09
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKC 319
+ C +CGKAF+RK L+ H H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE P++CS C KAF+ K L H TH+
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 393 QIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
G P+ C+ C K+F +K QL +H TH+ + G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 42.9 bits (102), Expect = 4e-06
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
G P+ C EC K F+ K +L H + H G +
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 31.7 bits (73), Expect = 0.037
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 338 THSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
S ++C C K F + L +H H G +
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 31.3 bits (72), Expect = 0.045
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 422 THSKVKPYNCGICAKSFVQRNTYIKH 447
S PY C C K+F +++ I H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISH 29
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 4e-09
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK F++ HL +H VH G KP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C K F+ HL H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F Q + L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F+ S L RH ++H G KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 29.0 bits (66), Expect = 0.38
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K F Q + +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.4 bits (124), Expect = 4e-09
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+C +CG+ F+ K HL QH +H GEKP S
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 47.2 bits (113), Expect = 1e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ H C EC + F+ KS LN+H +IH G KP +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
K C C + F K+ L H H+ KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
K +C C + F+ K HLN+H H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 33.7 bits (78), Expect = 0.009
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K QC C + FTL+ HL H H G P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.010
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ + S K + C C + F ++ +H I
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 4e-09
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGKAFS+ L +H +H GEKP S
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F Q ++L H H+ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C KAFS L H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C EC K FS S+L RH +IH G KP +
Sbjct: 2 SSGSSGT----GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C K+F Q + +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 4e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK F++ HL +H +H GEKP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G+KP+KC+ C K F+ HL H H+ K
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F Q + L H H+ KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 8e-06
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F+ S L RH IH G KP +
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.34
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ + KPY C C K F Q + +H I
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI 34
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 4e-09
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C+QCGKAFS + L H +H G+KP S
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
GEKP++C+ C KAFS + L H H+ K
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 44.8 bits (107), Expect = 8e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F ++ L H H+ KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C +C K FS +S L H IH G KP +
Sbjct: 2 SSGSSGT----GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K+F R++ H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 4e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
C +CGK+FS L+ H +H GE P S
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP +C C K+FS L H H+
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G PH C EC K FS S+L H +IH G P +
Sbjct: 2 SSGSSGT----GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 44.8 bits (107), Expect = 8e-07
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP C C KSF +QL H H+ P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.13
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K +C+ C K+F+ L H H G P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KP+ C C KSF + I H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 4e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK F++ HL +H +H GEKP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C K F+ HL H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F Q + L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C EC K F+ S L RH IH G KP +
Sbjct: 2 SSGSSGT----GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.33
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K F Q + +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 4e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C++C K F++ L H +H GEKP S
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G+K FKC+ C K F+ L H H+ K
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G K F C C K+F Q + L H H+ KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G C EC K F+ S L H +IH G KP +
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.093
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + K + C C K+F Q ++ H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 4e-09
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C++CGKAFS L H +H GEKP S
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G KP+ C+ C KAFS L H H+ K
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
GVKP+ C C K+F + L H H+ KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ + GV P+ C EC K FS S L H IH G KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.064
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + VKPY C C K+F ++ H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 4e-09
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C CGKAF+ + +L++H +H GEKP S
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE+P+ C+ C KAF+ + +L +H H+ K
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G +P+ CTVC K+F ++ L H H+ KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ + G P+ C C K F+ +S L +H +IH G KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.026
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + +PY C +C K+F R+ IKH
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + + + C C K FT R +L H H G P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 5e-09
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+C +CGKAF K L+ H H +K S
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP KC+ C KAF K L H TH ++K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 47.6 bits (114), Expect = 1e-07
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C EC K F KS+L H + H K +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP CT C K+F K+QL H TH K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 32.5 bits (75), Expect = 0.020
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K +C C K F + L H H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 32.5 bits (75), Expect = 0.024
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KP C C K+F ++ I H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 5e-09
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 291 CDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
C CGKAFS + L H +H G+KP S
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 49.0 bits (118), Expect = 3e-08
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++CS C KAFSH+ L+ H HS K
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C+VC K+F + L H HS KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C C K FS + L+ H +IH G KP +
Sbjct: 2 SSGSSGT----GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 30.6 bits (70), Expect = 0.096
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C +C K+F R + H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 29.4 bits (67), Expect = 0.31
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C C K F+ R+ L H H G P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 5e-09
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C++CGKAF L +H +H GEKP S
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F+ +QLQ H H+ KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+ C C KAF H L EH H+ K
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C EC K F S+L H +IH G KP +
Sbjct: 2 SSGSSGT----GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.083
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPYNC C K+F+ + +H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 28.3 bits (64), Expect = 0.61
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K + C+ C K F L+ H H G P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 5e-09
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGKAFS+ L +H VH GEKP S
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G KP++C+ C KAFS L H H+ K
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F Q ++L H H+ KP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C EC K FS S+L RH ++H G KP +
Sbjct: 2 SSGSSGT----GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K+F Q + +H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 5e-09
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK F +L +H +H GEKP S
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C K F H +L+ H H+ K
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F + L H H+ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C EC K F S L+RH +IH G KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C K F + +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 51.0 bits (123), Expect = 5e-09
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C QC K FS K L+ H H G KP S
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
GVKP+ C+ C K+F K+QL H +H+ VKP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G KP+ CS C K FS K L H +H+ K
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T GV P+ C +C+K FS KS+L H + H GVKP +
Sbjct: 2 SSGSSGT----GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + VKPY C CAK+F ++ I H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 33.3 bits (77), Expect = 0.011
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K + C C KTF+L+ L H H GV P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 53.0 bits (126), Expect = 6e-09
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 133 QLHKCELCYKMFSDKLLYEKHKMVHRQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCN 192
++++C LC S L H+ + R C C F + EH K E +K +C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKK-LTCL 73
Query: 193 FCLKPFLRKDLLEAHVNSVH 212
C++ F + H VH
Sbjct: 74 ECMRTFKSSFSIWRHQVEVH 93
Score = 50.3 bits (119), Expect = 5e-08
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 313 GEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 372
++ ++C C S H C YC F + + H +K E
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKCEYK-K 69
Query: 373 HTCLECSKCFSTKSELNRH 391
TCLEC + F + + RH
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 46.0 bits (108), Expect = 2e-06
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 282 HGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSE 341
+ +++C C S H + C YC F EH
Sbjct: 10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEY 67
Query: 342 NKCFQCKYCPKTFTLRKHLKAH 363
K C C +TF + H
Sbjct: 68 KK-LTCLECMRTFKSSFSIWRH 88
Score = 45.7 bits (107), Expect = 2e-06
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 255 RGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 314
+ Y C +C+ + H L + C C F +H
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHE-SKCEY 67
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYT-HSEN 342
K C C + F + H H++N
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 44.5 bits (104), Expect = 5e-06
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 361 KAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHL 420
+ + E + C C+ S+ E H ++ C C+ F Q H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEH- 61
Query: 421 YTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 453
+ + K C C ++F + +H VH
Sbjct: 62 ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 28.7 bits (63), Expect = 1.7
Identities = 14/101 (13%), Positives = 24/101 (23%), Gaps = 18/101 (17%)
Query: 178 EHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVF 237
E ++++ C C +H C C + S
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPE------ 56
Query: 238 LYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHH 278
H S K C C + F +++ H
Sbjct: 57 -------LKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRH 88
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGKAF +L H +H GEKP S
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C KAF +L H H+ K
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F + L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 7e-06
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F S L H IH G KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.28
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ + KPY C C K+F + H I
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI 34
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 6e-09
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C++CGK F H H GEKP S
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPFKC C K F H +HS K
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPF C C K F +Q +H +HS KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C EC K F T S+ H + H G KP +
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.065
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K F+C+ C K F +H H G P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.075
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + S KP+ C C K F + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C CGK+F +K L H +H GE P S
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++CS C K+F K L+ H H+
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C+ C KSF++K+QL H H+ P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ T G P+ C +C K F KS+L+ H +IH G P
Sbjct: 2 SSGSSGT----GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 31.4 bits (72), Expect = 0.048
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C KSF++++ H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 29.8 bits (68), Expect = 0.19
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C C K+F + L H H G P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-09
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C CGKAF+RK L H H GE+ S
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KCS C KAF+ K L+ H +H+ +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C+ C K+F +K+ L H +H+ +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G P+ C +C K F+ KS L+ H Q H G + +
Sbjct: 2 SSGSSGT----GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 31.3 bits (72), Expect = 0.054
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C C K FT + L H H G
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 30.2 bits (69), Expect = 0.14
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C K+F +++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-09
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGKAF +K L H +H GEKP S
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE+ ++CS C KAF K L+ H H K
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G + + C+ C K+F+QK+ L H H KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ T G + C EC K F KS L+ H +IH G KP +
Sbjct: 2 SSGSSGT----GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.064
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + Y C C K+F+Q++T H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 30.6 bits (70), Expect = 0.11
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 334 EHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + + ++C C K F + L H H G P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-09
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C++CGK FS+K L H H GEKP S
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+ C+ C K FS K L+ H TH+ K
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F QK+ L H TH+ KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K FS KS L+ H + H G KP +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.060
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ S KPY C C K+F Q++ H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 25.6 bits (57), Expect = 5.9
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 179 HIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEE 222
EK + CN C K F +K +L AH H K
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH-QRTHTGEKPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 7e-09
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGKAF + L H H GEKP S
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC+ C KAF + L H THS K
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F ++ L H THS KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C EC K F +S L H H G KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.34
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K+F R++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 50.6 bits (122), Expect = 8e-09
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
RC CGK F + + +QH +H GEKP S
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G H C +C K F S +H +IH G KP +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 9e-07
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G + C+ C K FLQ + H H+ KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE+ +CS C K F + +H H+ K
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.005
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + + C C K F+Q + +I+H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 50.8 bits (122), Expect = 8e-09
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 362 AHTNKHEGVLPHTC--LECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P C C FS EL+RH + H GVKP +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 46.5 bits (111), Expect = 2e-07
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 391 HAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KPFACT C F + +L H +HS VKP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 42.3 bits (100), Expect = 7e-06
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 289 FRCDQ--CGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F C CG FSR L +H H G KP S
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 335 HLYTHSENKCFQCKY--CPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K F C + C F+ L H H GV P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.6 bits (122), Expect = 9e-09
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C++CGK F + L H VH GEKP S
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F + +L H +H G KP +
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC C K F + L H H+ K
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K F+ + L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.063
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C K F+ R H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 28.7 bits (65), Expect = 0.44
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C+ C K F R+ L H H G P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.3 bits (121), Expect = 9e-09
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C +CGKAF QH +H G++P S
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 45.3 bits (108), Expect = 7e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC C KAF +H H+ +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C+EC K F S +H ++H G +P +
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C K+F + H H+ +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 31.0 bits (71), Expect = 0.068
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C K+F ++ +H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 9e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C +C FS+ L H VH GEKP S
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 12/41 (29%), Positives = 13/41 (31%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEK +KC C FS L H H K
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G C EC CFS S L H +H G KP +
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G K + C C+ F Q + L+ H H KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ K ++C+ C F+ L+ H N H G P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.11
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ K + C C F Q ++ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 26.0 bits (58), Expect = 5.3
Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 210 SVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVC 262
S K + C ECD + SQ L H Q H G KP
Sbjct: 5 SSGMGEKTWKCRECDMCF-SQ------------ASSLRLH-QNVHVGEKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKC 319
+ C +CGK FSRK LV H H G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
G P+ C C K F +K QL +H THS + G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 46.3 bits (111), Expect = 3e-07
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GE P++C C K FS K L H THS
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ + G P+ C EC K FS K +L H + H G +
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 31.7 bits (73), Expect = 0.043
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + PY C C K F +++ + H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 28.6 bits (65), Expect = 0.49
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + ++C C K F+ + L +H H G +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C CGK+F++K L H +H GEKP S
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
GEKP++CS C K+F+ K L+ H H+ K
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C++C KSF +K+QL H H+ KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G P+ C C K F+ KS+L+ H QIH G KP +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.028
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C IC KSF +++ H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 30.6 bits (70), Expect = 0.097
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C C K+FT + L H H G P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
S GGEKP+KC C F HL H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYN 430
+ GG KP+ C C F+Q L+ H+ H+ P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 45.6 bits (109), Expect = 4e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPF 317
++C+ CG F + HL H +H G P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 42.1 bits (100), Expect = 8e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 251 QTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 282
S G KPY CE C F Q +L+ H+L+H
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFA 402
+ G P+ C C F + L H IH G P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 33.3 bits (77), Expect = 0.009
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHT 374
+ K ++C+ C F HL+AH H G P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 31.3 bits (72), Expect = 0.043
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ KPY C C FVQ H+ I
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 27.1 bits (61), Expect = 1.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
+ CE C F + A L+ H ++H
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIH 34
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
G KP+ C C K+F+ K+ L H TH+ V + G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKC 319
+ C++CGKAF K L+ H H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++C+ C KAF K L H TH+
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ + G P+ C EC K F KS L H + H GV +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 33.3 bits (77), Expect = 0.012
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K ++C C K F + L H H GV +
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.1 bits (74), Expect = 0.031
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + S KPY C C K+F+ ++ I H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++CD C K+F L H +H GEKP S
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KC C K+F + L H H+ K
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C VC+KSF + L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C C K F S L H +IH G KP +
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.30
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C +C KSF ++ H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 49.9 bits (120), Expect = 1e-08
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
+ C +CGK+F L++H VH GEKP S
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 348
GEKP+ C C K+F L +H HS K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 45.3 bits (108), Expect = 7e-07
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C C KSF + L H HS KP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C EC K F S L +H ++H G KP +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.078
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLE 377
+ + K + CK C K+F L H H G P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.098
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPYNC C KSF + +KH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKC 319
+ C++C KAF+ K +L+ H H GE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP++C+ C KAF+ K +L H TH+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
G KP+ C C K+F K+ L H TH+ + G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 43.2 bits (103), Expect = 3e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ + G P+ C EC K F+TKS L H + H G +
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.090
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + KPY C C K+F ++ + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKC 319
+ C++CGKAF K +L+ H+ H GE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
G+KP+ C C K+F K+ L H TH+ + G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
G KP+ C+ C KAF K +L H TH+
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 43.2 bits (103), Expect = 3e-06
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ T G+ P+ C EC K F +KS L H + H G +
Sbjct: 2 SSGSSGT----GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 32.1 bits (74), Expect = 0.025
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K + C C K F + +L HT H G +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.087
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + +KPY C C K+F ++ I H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 2e-08
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
++C CGK+F+ K L H H GE+ S
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKP+KCS C K+F+ K L H H+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ + G P+ C +C K F+ KS L H + H G + +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G KP+ C+ C KSF K++L+ H H+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.1 bits (74), Expect = 0.033
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ + + KPY C C KSF ++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 31.0 bits (71), Expect = 0.080
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K ++C C K+FT + L+ H H G
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-08
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
G KPF C C +F L HL +H + P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 48.0 bits (115), Expect = 8e-08
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
F+C +CG FS L +H H P S
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 47.6 bits (114), Expect = 1e-07
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEKPF+C C FS L +HL +H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ + G P C EC FS L +H + H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 34.5 bits (80), Expect = 0.004
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ + K FQCK C F+ L H HE P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 32.2 bits (74), Expect = 0.027
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHL 448
+ + KP+ C C +F + KHL
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 48.3 bits (116), Expect = 5e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 289 FRCDQCGKAFSRKGHLVQHS-FVHGGEKPFKCS 320
+ C +CGKAF + L++H + H GEKP S
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 44.9 bits (107), Expect = 8e-07
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHL-YTHSENKCFQC 347
G+KP++C C KAF L H Y H+ K
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 42.6 bits (101), Expect = 6e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHL-YTHSKVKPYNC 431
G KP+ C C K+F+Q T L H Y H+ KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHA-QIHGGVKPFACT 404
+ + G P+ C+EC K F + L RH H G KP +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVH 452
+ + + KPY C C K+F+Q + I+H H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 27.1 bits (61), Expect = 1.8
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNK-HEGVLPHTC 375
+ + K ++C C K F L H H G P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 25.2 bits (56), Expect = 9.8
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 183 HEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNC 220
+K + C C K F++ L H H K
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 48.3 bits (116), Expect = 5e-08
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPF 317
+RCDQCGKAFS+KG L+ H VH G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 47.2 bits (113), Expect = 1e-07
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
S GGEKP++C C KAFS KG L H+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 44.9 bits (107), Expect = 8e-07
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYN 430
+ GG KP+ C C K+F QK L H+ H+ P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFA 402
+ G P+ C +C K FS K L H ++H G P +
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 31.8 bits (73), Expect = 0.034
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ KPY C C K+F Q+ + I H+ +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 29.8 bits (68), Expect = 0.19
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHT 374
+ K ++C C K F+ + L H H G P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 47.6 bits (114), Expect = 9e-08
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPF 317
+ C +CGK+F +KG L H +H G P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 42.6 bits (101), Expect = 5e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
G++ ++C C K+F KG L H H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 39.5 bits (93), Expect = 7e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 364 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFA 402
++ G + C EC K F K L H +IH G P +
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 37.2 bits (87), Expect = 4e-04
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 392 AQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYN 430
+ G + + C C KSF QK L H H+ P +
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 29.1 bits (66), Expect = 0.31
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 427 KPYNCGICAKSFVQRNTYIKH 447
+ Y C C KSF Q+ + H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH 29
Score = 27.2 bits (61), Expect = 1.7
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 338 THSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHT 374
S + ++C+ C K+F + L H H G P +
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.6 bits (113), Expect = 1e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYC 322
C+ CGK F HL +H H GEKP+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 45.3 bits (107), Expect = 6e-07
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCN 407
C C K F LNRH H G KP++ +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 44.2 bits (104), Expect = 2e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 399 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICA 435
K AC +C K F L H +HS KPY+ G +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 42.2 bits (99), Expect = 9e-06
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYC 350
K C C K F HLN H +HS K +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 41.1 bits (96), Expect = 2e-05
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 251 QTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQC 294
+S R K CEIC K F Y+L H L H G +
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSH-SGEKPYSSGPS 46
Score = 38.4 bits (89), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 338 THSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECS 379
+ K C+ C K F HL H H G P++ S
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 33.4 bits (76), Expect = 0.011
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 158 RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFC 194
R+ CE+C + F D N H + H EK +S
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.8 bits (64), Expect = 0.50
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 182 KHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEEC 223
K +C C K F L H S H K Y+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
Score = 28.0 bits (62), Expect = 0.95
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
CE+C + F L H + H
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSH 35
Score = 28.0 bits (62), Expect = 1.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 129 HKIAQLHKCELCYKMFSDKLLYEKHKMVH 157
+ + CE+C K+F D +HK+ H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 47.3 bits (113), Expect = 1e-07
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 343
S GGE P+ C C K+F+ +G L H + S++
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 46.1 bits (110), Expect = 3e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFK 318
+ C QCGK+F+++G L H P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 41.5 bits (98), Expect = 1e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 429
+ GG P+ C C KSF Q+ L H + S+ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 40.3 bits (95), Expect = 4e-05
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFA 402
+ G P+ C +C K F+ + L H + P +
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 31.9 bits (73), Expect = 0.036
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 422 THSKVKPYNCGICAKSFVQRNTYIKH 447
+ PY CG C KSF QR + H
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 29.2 bits (66), Expect = 0.31
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 338 THSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHT 374
+ + C C K+FT R L H P +
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 25.3 bits (56), Expect = 8.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
+ C C ++FT+ L VH
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSC 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 49.5 bits (117), Expect = 1e-07
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 251 QTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQH 307
+ + I +VC +C F+ +LK H+ C C K F+ + H
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT---KVCPVCKKEFTSTDSALDH 119
Score = 48.8 bits (115), Expect = 3e-07
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 13/129 (10%)
Query: 90 QSKEKKAKKTKVPMVQVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLL 149
+S K + + V + R H + + +L + + + + +LL
Sbjct: 3 ESDVDSGSKKYLSNHKGIFIHVTLEELKR-----YHQLTPEQKRLIRAIVKTLIHNPQLL 57
Query: 150 YEKHKMVH------RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDL 203
E + F C +C+ F+ +HI E K C C K F D
Sbjct: 58 DESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDS 115
Query: 204 LEAHVNSVH 212
HV H
Sbjct: 116 ALDHVCKKH 124
Score = 46.1 bits (108), Expect = 3e-06
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 3/118 (2%)
Query: 340 SENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVK 399
S +K + L + + T + + S L R
Sbjct: 15 SNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI-S 73
Query: 400 PFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHGVITS 457
F C +C F L+ H+ C +C K F ++ + H+ H + S
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNICVS 129
Score = 45.3 bits (106), Expect = 4e-06
Identities = 15/104 (14%), Positives = 24/104 (23%), Gaps = 6/104 (5%)
Query: 294 CGKAFSRKGHLVQHSFVHGGEKPFKC----SYCPKAFSHKGHLNEHLYTHSENKCFQCKY 349
+ + H ++ + + L F C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 350 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQ 393
C F+ LK H E C C K F++ H
Sbjct: 80 CLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVC 121
Score = 43.4 bits (101), Expect = 2e-05
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 7/120 (5%)
Query: 256 GIKPYVC--EICSKAFTQQYNLKHHLLLHGDG---NSLFRCDQCGKAFSRKGHLVQHSFV 310
G K Y+ + T + ++H L ++ + + +
Sbjct: 9 GSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA 68
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGV 370
F C C FS L +H+ K C C K FT H K +
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 33.0 bits (74), Expect = 0.078
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 356 LRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTV----CNKSFL 411
+ K + + H+G+ H LE H + V N L
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLE--------ELKRYHQLTPEQKRLIRAIVKTLIHNPQLL 57
Query: 412 QKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHL 448
++ L + + C +C F + +H+
Sbjct: 58 DESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI 94
Score = 29.1 bits (64), Expect = 1.7
Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 152 KHKMVHRQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSV 211
K + + + V + + + + + + + L +
Sbjct: 11 KKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA-- 68
Query: 212 HKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQ 271
K + ++ C C + S L H++ + VC +C K FT
Sbjct: 69 SKAISQFVCPLCLMPFSSSVS-------------LKQHIRYTEH---TKVCPVCKKEFTS 112
Query: 272 QYNLKHHL 279
+ H+
Sbjct: 113 TDSALDHV 120
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
K + C+ C KAF+ HL H H+
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKC 319
+ C++CGKAF+R HL +H +H +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
K + C C K+F + L H H++ + G
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 36.8 bits (86), Expect = 6e-04
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 358 KHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
+ T + C EC K F+ L RH +IH +
Sbjct: 2 SSGSSGT----DSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 29.9 bits (68), Expect = 0.16
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 334 EHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEG 369
+ +++K + C C K FT HL H H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 28.7 bits (65), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ + K YNC C K+F + +H +I
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/41 (29%), Positives = 13/41 (31%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
GEK C C K F + L H H KC
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
CD+CGK F L H VH GEK S
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 404
+ G HTC EC K F S L H ++H G K +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 43.0 bits (102), Expect = 4e-06
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 431
G K C C K+F + L+ H H K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 31.0 bits (71), Expect = 0.069
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 419 HLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
+ S K + C C K+F + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 26.8 bits (60), Expect = 2.7
Identities = 10/41 (24%), Positives = 12/41 (29%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
+ S K C C K F L+ H H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 45.6 bits (108), Expect = 4e-07
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 306 QHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKC 344
GE PFKCS C + F+ + +L +H TH+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 41.4 bits (97), Expect = 2e-05
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 283 GDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKP 316
G G + F+C +C + F+++ +LVQH H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 37.9 bits (88), Expect = 2e-04
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 390 RHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
G PF C+ C++ F Q+ L H TH++ + G
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
Score = 36.8 bits (85), Expect = 6e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 251 QTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGD 284
+S G P+ C C + FTQ+ L H H
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 36.4 bits (84), Expect = 0.001
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 362 AHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKP 400
+ + G P C +C + F+ ++ L +H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 32.1 bits (73), Expect = 0.029
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 418 NHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
+ + + P+ C C + F QRN ++H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 30.6 bits (69), Expect = 0.095
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEG 369
+ + F+C C + FT R +L H H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 2e-06
Identities = 81/568 (14%), Positives = 154/568 (27%), Gaps = 201/568 (35%)
Query: 103 MVQVFTCEVCQQAFTRNADLK-VHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH-RQV 160
++ VF + AF N D K V M I L K E+ D ++ K + ++
Sbjct: 21 ILSVF-----EDAFVDNFDCKDVQDMPKSI--LSKEEI------DHIIMSKDAVSGTLRL 67
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSC--NFCLKPFLRKDLLEAHVNSVHKDV--- 215
F + + ++F E +++ + L S +P + + + ++ D
Sbjct: 68 FWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 216 KKYNCEECDKYY-----LSQ------------GGVG---------------CVF---LYY 240
KYN Y L + G G C +++
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 241 LSQGELDS------HVQTSHRGIKPYVCEICSKAFTQQYN-------LKHHLLLHGDGNS 287
L+ +S +Q I P + + L+ L N
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 288 LFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQC 347
L VQ++ AF+ C
Sbjct: 247 LLVLLN-----------VQNAKAW------------NAFN-----------------LSC 266
Query: 348 KYCPKT-FTLRKH-----LKAHTNKH-------EGVLPHTCLE-CSKCFSTK-SELNRHA 392
K T R L A T H + P K + +L R
Sbjct: 267 K----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 393 -QIHGGVKPFACTVCNKSFLQKTQLQNHL-----YTHSKVKPYNCGICAKSFV------- 439
+ P ++ +S +++ L + H I +S +
Sbjct: 323 LTTN----PRRLSIIAES------IRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAE 370
Query: 440 QRNTYIKHLEIVHGVITSNSANMNIPLQ-------HITPQV------QLHQQQ--QQQPP 484
R + L + + +IP + +LH+ ++QP
Sbjct: 371 YRKMF-DRLSVF-------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 485 PQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQ-NIQQNLQQNIQQNIQHLLQQ 543
IP + + ++++ +H SI + NI + + L+
Sbjct: 423 ESTISIPSIYL-ELKVKLENEY--ALHRSI------VDHYNIPKTFDSD------DLIPP 467
Query: 544 NM------HVANSSHHMSQQRMHQLYAL 565
+ H+ HH+ + L
Sbjct: 468 YLDQYFYSHIG---HHLKNIEHPERMTL 492
Score = 31.7 bits (71), Expect = 0.76
Identities = 52/403 (12%), Positives = 109/403 (27%), Gaps = 118/403 (29%)
Query: 201 KDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHRGIKPY 260
KD+L ++ + + ++ K + LS+ E+D + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPK------SI-------LSKEEIDHIIMSKDAVSGTL 65
Query: 261 VCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKP---- 316
LF K + FV +
Sbjct: 66 R--------------------------LFWT------LLSKQEEMVQKFVEEVLRINYKF 93
Query: 317 ----FKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYC---PKTFT-LRKHLKAHTNKHE 368
K + + ++ + +++N+ F KY + + LR+ L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALL-ELRPAK 151
Query: 369 GVLPH-------TCL----------EC-----------SKCFSTKSELNRHAQIHGGVKP 400
VL T + +C C S ++ L ++ + P
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 401 FACTVCNKSF---LQKTQLQNHLYTHSKVKPY-NCGICAKSFVQRNTYIKHLEIVHG--- 453
+ + S L+ +Q L K KPY NC + V N +++ + +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLN--VQNAKAWNAFNL 264
Query: 454 -----VITSNSANMNIPLQHITPQVQLHQQQQQQPPPQP-------AHIP----PPQIQH 497
+ T + T + L P + P ++
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 498 IPPPIQHQPVQNIHPSIQHIQQNLQQNIQQNLQQNIQQNIQHL 540
P ++I + N + L I+ ++ L
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVL 366
Score = 31.0 bits (69), Expect = 1.4
Identities = 32/241 (13%), Positives = 77/241 (31%), Gaps = 48/241 (19%)
Query: 7 RFEIYLLILLLTLTIVLVLPVVSVELLP---MQQSKEKKA---KKTKVPMVQVADFVSGV 60
++ + + LT ++ S+ +L ++ ++ + +P + +S +
Sbjct: 343 TWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAHIPT-IL---LSLI 395
Query: 61 W--SLEYVEQS------------KEKKAKKTKVPMVQVLEYVEQSKEKKAKKTKVPMVQ- 105
W ++ K+ K +P + LE + + + A +V
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRS--IVDH 452
Query: 106 -VFTCEVCQQAFTRNAD---LKVHSMVH--KIAQLHKCELCYKMFSDKLLYEKHKMVHRQ 159
H H I + L +F D + + K+ H
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDS 511
Query: 160 VFTCEV--CMRSFNDRKEFNEHIMKHEK--EKLFSCNFCLKPFLRKDLLEAH-VNSVHKD 214
+ + K + +I ++ E+L + + FL K +E + + S + D
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN---AILDFLPK--IEENLICSKYTD 566
Query: 215 V 215
+
Sbjct: 567 L 567
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 43.5 bits (103), Expect = 2e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 307 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
+ G KPF+C C ++FS HL H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 39.2 bits (92), Expect = 8e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 391 HAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKV 426
+ G+KPF C C++SF + L H H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 363 HTNKHEGVLPHTCLECSKCFSTKSELNRHAQIH 395
T G+ P C +C + FS L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.5 bits (77), Expect = 0.009
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 253 SHRGIKPYVCEICSKAFTQQYNLKHHLLLH 282
GIKP+ C C ++F++ +L H H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.1 bits (76), Expect = 0.010
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVH 311
F+C C ++FSR HL H H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.5 bits (72), Expect = 0.044
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 335 HLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKH 367
+ K FQC C ++F+ HL H +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.5 bits (64), Expect = 0.55
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 179 HIMKHEKEKLFSCNFCLKPFLRKDLLEAHV 208
K F C C + F R D L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 27.3 bits (61), Expect = 1.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 419 HLYTHSKVKPYNCGICAKSF 438
+ +KP+ C C +SF
Sbjct: 2 STRGSTGIKPFQCPDCDRSF 21
Score = 26.9 bits (60), Expect = 1.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
F C C ++F+R+ L +H H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 43.9 bits (104), Expect = 2e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 308 SFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHS 340
S GEKP+ C+ C + FS L +H H+
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 42.7 bits (101), Expect = 5e-06
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKC 319
+ C +C + FS LVQH +H +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 37.3 bits (87), Expect = 3e-04
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 403
G P++C EC + FS + L +H ++H +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.5 bits (85), Expect = 6e-04
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 395 HGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 432
G KP++C C ++F +L H H+ + G
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 31.9 bits (73), Expect = 0.037
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 422 THSKVKPYNCGICAKSFVQRNTYIKH 447
S KPY+C C ++F N ++H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 30.8 bits (70), Expect = 0.097
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 338 THSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
S K + C C +TF+ L H H +
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 46.7 bits (110), Expect = 2e-05
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 2/117 (1%)
Query: 465 PLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQN 524
LQ+ L Q Q PP PA Q PP P + Q+ L Q
Sbjct: 13 QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQ 72
Query: 525 IQQ--NLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMHQLYALHHDGYMTATASIMQ 579
I Q ++ + L+ N ++ + Q ++ M
Sbjct: 73 IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129
Score = 46.4 bits (109), Expect = 2e-05
Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 2/107 (1%)
Query: 457 SNSANMNIPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQH 516
+ M +P Q P + QQQ P + H Q + V + P+
Sbjct: 40 MSYGQMGMPPQGAVPSMG--QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97
Query: 517 IQQNLQQNIQQNLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMHQLY 563
Q Q QQ Q + + + M+Q L
Sbjct: 98 QPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLL 144
Score = 44.4 bits (104), Expect = 1e-04
Identities = 20/112 (17%), Positives = 32/112 (28%)
Query: 452 HGVITSNSANMNIPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIH 511
H I + +MN H P V + Q Q P Q Q Q + P QP +
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129
Query: 512 PSIQHIQQNLQQNIQQNLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMHQLY 563
+++ + Q ++ L I + Y
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181
Score = 43.7 bits (102), Expect = 2e-04
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 1/97 (1%)
Query: 462 MNIPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQP-VQNIHPSIQHIQQN 520
M+ + + PQ QL Q P QPA PPQ Q + QQ
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60
Query: 521 LQQNIQQNLQQNIQQNIQHLLQQNMHVANSSHHMSQQ 557
Q+ L Q I Q + ++H +
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97
Score = 42.1 bits (98), Expect = 4e-04
Identities = 12/95 (12%), Positives = 23/95 (24%)
Query: 467 QHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQNIQ 526
Q +TP + QQ Q + + + P QP + QQ
Sbjct: 60 QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119
Query: 527 QNLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMHQ 561
Q + ++ + +
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDL 154
Score = 39.8 bits (92), Expect = 0.002
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 2/113 (1%)
Query: 456 TSNSANMNIPLQHITPQVQLHQQQQQQPPPQP-AHIPPPQIQHIPPPIQHQPVQNIHPSI 514
T ++ + T + P P A++ P + P+Q Q P+
Sbjct: 63 TPAQEQLHQQIDQATTSMN-DMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
Query: 515 QHIQQNLQQNIQQNLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMHQLYALHH 567
+ QN++ Q + L + + L
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSEL 174
Score = 38.7 bits (89), Expect = 0.006
Identities = 13/103 (12%), Positives = 24/103 (23%), Gaps = 3/103 (2%)
Query: 462 MNIPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNL 521
+ Q PP Q Q + P + Q + ++
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVP-SMGQQQFLTPAQEQLHQQIDQATTS--MNDM 83
Query: 522 QQNIQQNLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMHQLYA 564
+ + N Q +Q + M+ Q A
Sbjct: 84 HLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126
Score = 36.3 bits (83), Expect = 0.028
Identities = 10/103 (9%), Positives = 26/103 (25%)
Query: 477 QQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQNIQQNLQQNIQQN 536
+++ P P P + + Q + Q
Sbjct: 3 HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62
Query: 537 IQHLLQQNMHVANSSHHMSQQRMHQLYALHHDGYMTATASIMQ 579
Q + + ++ M+ +H + + + YM +
Sbjct: 63 TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQM 105
Score = 29.0 bits (64), Expect = 4.8
Identities = 14/87 (16%), Positives = 22/87 (25%)
Query: 465 PLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQN 524
P + L QQQQ P Q++ P Q P+ + I
Sbjct: 99 PQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPP 158
Query: 525 IQQNLQQNIQQNIQHLLQQNMHVANSS 551
+ L + S+
Sbjct: 159 PPLVIPPERMLVPSELSNASPDYIRST 185
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 37.2 bits (85), Expect = 5e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 283 GDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 314
G + C +CGK F L++H +H GE
Sbjct: 7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 39.7 bits (92), Expect = 8e-04
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 5/115 (4%)
Query: 99 TKVPMVQVFTCEVCQQAFTRN---ADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKM 155
K C V + N D + + E C + L +
Sbjct: 46 IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAH 105
Query: 156 VHRQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNS 210
+ C C R F + N HI+K + SC+ C +D E H +
Sbjct: 106 CEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFED-KEIHDQN 158
Score = 33.1 bits (75), Expect = 0.11
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 6/124 (4%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPF 317
+ C + ++ + + + + +C G + ++ H
Sbjct: 52 AGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALM 111
Query: 318 KCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLE 377
C C + F H+N H+ + C C + H+ P
Sbjct: 112 DCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFEDK-----EIHDQNCPLALEH 165
Query: 378 CSKC 381
Sbjct: 166 HHHH 169
Score = 27.7 bits (61), Expect = 8.3
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 336 LYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHE-GVLPHTCLECSKCFSTKSELNRHAQI 394
+ + +C + + + K E L C + Q
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104
Query: 395 HGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 450
H C C + F + + H+ + +C CA S H +
Sbjct: 105 HCEFALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQN 158
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 41.4 bits (96), Expect = 0.001
Identities = 8/56 (14%), Positives = 12/56 (21%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVK 427
S S + C VC+ L H+ +H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 37.1 bits (85), Expect = 0.019
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 253 SHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNS 287
+ Y C +CS +L H+ HG +
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 36.8 bits (84), Expect = 0.025
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 291 CDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSE 341
+ S+ V ++C C L+ H+ +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 36.8 bits (84), Expect = 0.026
Identities = 7/52 (13%), Positives = 13/52 (25%)
Query: 345 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHG 396
+ + + C CS + +L+ H HG
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 34.1 bits (77), Expect = 0.15
Identities = 10/53 (18%), Positives = 11/53 (20%)
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKH 367
S T S +QC C L AH H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.3 bits (75), Expect = 0.24
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 398 VKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHGVITS 457
+ + + T S Y C +C+ H+ HG+ +
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLHGN 208
Query: 458 NS 459
+
Sbjct: 209 MT 210
Score = 32.9 bits (74), Expect = 0.32
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 1/69 (1%)
Query: 66 VEQSKEKKAKKTKVPMVQVLE-YVEQSKEKKAKKTKVPMVQVFTCEVCQQAFTRNADLKV 124
V+ K + + V + + + C VC DL
Sbjct: 139 VDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDA 198
Query: 125 HSMVHKIAQ 133
H H +
Sbjct: 199 HVASHGLHG 207
Score = 32.9 bits (74), Expect = 0.35
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 242 SQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRK 301
G +D+ ++ + + + E S ++ G+ ++C C
Sbjct: 135 RSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHG-YQCHVCSAVLFSP 193
Query: 302 GHLVQHSFVHG 312
L H HG
Sbjct: 194 LDLDAHVASHG 204
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.8 bits (87), Expect = 0.001
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 331 HLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAH-TNKHEGVL---PHTCLECSKCFSTKS 386
H + + ++CKYC H ++H V+ + C+EC+
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 387 ELNRH-AQIHGGVKPFACTV 405
L+ H + H G + F T+
Sbjct: 65 ALSEHNLKYHPGEENFKLTM 84
Score = 35.5 bits (81), Expect = 0.006
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 249 HVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLL-HGD--GNSLFRCDQCGKAFSRKGHLV 305
H Q + + Y C+ C+ H+ H + NS + C +C R L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 306 QHSF-VHGGEKPFKCS 320
+H+ H GE+ FK +
Sbjct: 68 EHNLKYHPGEENFKLT 83
Score = 34.0 bits (77), Expect = 0.025
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 4/70 (5%)
Query: 303 HLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH----SENKCFQCKYCPKTFTLRK 358
H + E ++C YC H+ + N + C C
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 359 HLKAHTNKHE 368
L H K+
Sbjct: 65 ALSEHNLKYH 74
Score = 33.6 bits (76), Expect = 0.029
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 143 MFSDKLLYEKHKMVHRQVFTCEVCMRSFNDRKEFNEHI-MKH---EKEKLFSCNFCLKPF 198
M + + + C+ C D F H+ +H + C C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 199 LRKDLLEAHVNSVH 212
R D L H H
Sbjct: 61 KRYDALSEHNLKYH 74
Score = 28.2 bits (62), Expect = 2.9
Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 4/89 (4%)
Query: 386 SELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYT-HSKVK---PYNCGICAKSFVQR 441
+ + Q + C C H+ + H V Y C C +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 442 NTYIKHLEIVHGVITSNSANMNIPLQHIT 470
+ +H H + M
Sbjct: 64 DALSEHNLKYHPGEENFKLTMVKRNNQTI 92
Score = 27.0 bits (59), Expect = 7.4
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 176 FNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKK---YNCEECDKYYLSQGG 232
+ + + E + C +C ++ HV+S H +V Y C EC+
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 233 V 233
+
Sbjct: 66 L 66
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 35.1 bits (80), Expect = 0.002
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 254 HRGIKPYVCEICSKAFTQQYNLKHHLLLHGD 284
G +P+VC IC AFT + N HL +H D
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 31.3 bits (70), Expect = 0.057
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHSE 341
G++PF C C AF+ K + HL H++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 29.0 bits (64), Expect = 0.31
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 395 HGGVKPFACTVCNKSFLQKTQLQNHLYTHS 424
G +PF C +C +F K HL H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 28.6 bits (63), Expect = 0.42
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 367 HEGVLPHTCLECSKCFSTKSELNRHAQIH 395
G P C C F+TK+ RH ++H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.9 bits (81), Expect = 0.002
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 372 PHTC--LECSKCFSTKSELNRHAQIHGGVK 399
P C C K F+ EL RH + H G K
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 32.2 bits (74), Expect = 0.019
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 289 FRCD--QCGKAFSRKGHLVQHSFVHGGEK 315
F C CGK F+R L +H H GEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.4 bits (72), Expect = 0.035
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 399 KPFACTV--CNKSFLQKTQLQNHLYTHSKVK 427
+PF CT C K F + +LQ H TH+ K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.3 bits (69), Expect = 0.091
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 315 KPFKCSY--CPKAFSHKGHLNEHLYTHSENK 343
+PF C++ C K F+ L H TH+ K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.8 bits (60), Expect = 1.7
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 258 KPYVC--EICSKAFTQQYNLKHHLLLH 282
+P++C C K FT+ L+ H H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 37.9 bits (87), Expect = 0.003
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 459 SANMNIPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQN-IHPSIQHI 517
+A + P QH+ Q Q+ QQ + + PP Q Q + + P IQ +
Sbjct: 22 AAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 81
Query: 518 QQNLQQNIQQNLQQNIQQNIQHLLQ 542
L I L + + H+L+
Sbjct: 82 HPTLAGKITGMLLEIDNSELLHMLE 106
Score = 33.7 bits (76), Expect = 0.061
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 7/90 (7%)
Query: 460 ANMNIPLQHITPQVQLHQ-----QQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSI 514
A P PQ + QQ PQ P P+ + + P
Sbjct: 6 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQE 65
Query: 515 QH--IQQNLQQNIQQNLQQNIQQNIQHLLQ 542
Q + + L IQ + LL+
Sbjct: 66 QKQMLGERLFPLIQAMHPTLAGKITGMLLE 95
Score = 27.5 bits (60), Expect = 6.4
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 9/76 (11%)
Query: 477 QQQQQQPPPQP---------AHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQNIQQ 527
P + P + P QP ++ L Q
Sbjct: 5 SAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 64
Query: 528 NLQQNIQQNIQHLLQQ 543
+Q + + + L+Q
Sbjct: 65 EQKQMLGERLFPLIQA 80
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.8 bits (78), Expect = 0.005
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 343
+ F C C +AF+ + HL H +H+ K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.4 bits (77), Expect = 0.008
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEK 315
F C+ C +AF+R+ HL +H H EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.9 bits (73), Expect = 0.026
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLH 282
+ +VCE+C++AF +Q +LK H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 30.7 bits (70), Expect = 0.060
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 399 KPFACTVCNKSFLQKTQLQNHLYTHSKVK 427
+ F C VC ++F ++ L+ H +H+ K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.3 bits (61), Expect = 0.97
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 343 KCFQCKYCPKTFTLRKHLKAHTNKHEG 369
+ F C+ C + F ++HLK H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 27.3 bits (61), Expect = 1.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVK 399
C C++ F+ + L RH + H K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.7 bits (57), Expect = 3.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
F CEVC +AF R LK H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein
transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Length = 554
Score = 37.8 bits (87), Expect = 0.009
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 465 PLQHITPQVQLHQQQQQ--QPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQ 522
L I + + Q Q+ + +P PQ + P + ++ + L
Sbjct: 10 DLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSGHTVTVHAVD--LD 67
Query: 523 QNIQQNLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMHQLYALHHDGYMTATASI 577
++ L +Q L + + + + + + GY T+ +
Sbjct: 68 FGVEGRLFD-PAPLVQDYLNRPLDNEQLFLLV--KALSAAL--YDRGYATSIVTF 117
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 33.0 bits (74), Expect = 0.017
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHS 340
GEKP+ C C F K ++ H+ +H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 29.5 bits (65), Expect = 0.23
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 183 HEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKK 217
EK +SC C F RKD + HV S V K
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 29.1 bits (64), Expect = 0.38
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 395 HGGVKPFACTVCNKSFLQKTQLQNHLYTHS 424
G KP++C VC F +K ++ H+ +H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 28.7 bits (63), Expect = 0.50
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 339 HSENKCFQCKYCPKTFTLRKHLKAHTNKHEG 369
S K + C C F + + H H+G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.0 bits (61), Expect = 0.98
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 252 TSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNS 287
+ G KPY C +C F ++ + +H+ H
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 38
Score = 27.2 bits (59), Expect = 1.6
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 423 HSKVKPYNCGICAKSFVQRNTYIKHLEIVHGVITSN 458
S KPY+C +C F +++ H+ G + +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
Score = 27.2 bits (59), Expect = 1.9
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 364 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGG 397
++ G P++C C F K ++ H + H G
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.4 bits (57), Expect = 3.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGG 313
+ C CG F RK + H H G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.3 bits (54), Expect = 9.4
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 107 FTCEVCQQAFTRNADLKVHSMVH 129
++C VC F R + H H
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSH 33
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 32.9 bits (75), Expect = 0.019
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 241 LSQGELDSHVQTSHRGIKPYVCEI--CSKAFTQQYNLKHHLLLH 282
L +G +D +V+ K + C C+K F ++YN++ H+ H
Sbjct: 2 LPRGSIDKYVKEMPD--KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 30.2 bits (68), Expect = 0.17
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 341 ENKCFQCKY--CPKTFTLRKHLKAHTNKH 367
+K F+C + C KTF R ++++H H
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 29.1 bits (65), Expect = 0.37
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 312 GGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENK 343
+K F+C + C K F + ++ H+ TH E++
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.6 bits (56), Expect = 5.9
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 284 DGNSLFRC--DQCGKAFSRKGHLVQHSFVHGGEK 315
+ F C C K F R+ ++ H H ++
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.2 bits (55), Expect = 8.1
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 399 KPFACTV--CNKSFLQKTQLQNHLYTH 423
K F C C K+F ++ +++H+ TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 32.1 bits (73), Expect = 0.020
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 427 KPYNCGICAKSFVQRNTYIKHLEIVHG 453
K Y CG+C ++F +R+ I+H + +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 31.0 bits (70), Expect = 0.060
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 187 KLFSCNFCLKPFLRKDLLEAHVNSVHK 213
K ++C C + F R+DLL H +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 30.2 bits (68), Expect = 0.10
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 372 PHTCLECSKCFSTKSELNRHAQ-IHGG 397
+ C C++ F+ + L RHAQ IH G
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 26.0 bits (57), Expect = 3.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 399 KPFACTVCNKSFLQKTQLQNH 419
K +AC +CN++F ++ L H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
Score = 24.8 bits (54), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 258 KPYVCEICSKAFTQQ-YNLKHHLLLHG 283
K Y C +C++AFT++ ++H +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (73), Expect = 0.027
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 283 GDGNSLFRCDQCGKAFSRKGHLVQHSFVH 311
G F+C++C K FS +L QH +H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 31.7 bits (71), Expect = 0.042
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 311 HGGEKPFKCSYCPKAFSHKGHLNEHLYTHS 340
EK FKC+ C K FS +L +H H+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 29.8 bits (66), Expect = 0.19
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 338 THSENKCFQCKYCPKTFTLRKHLKAHTNKH 367
+ + KCF+C C KTF+ K+L H H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.2 bits (54), Expect = 8.5
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 252 TSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDG 285
+S + K + C C K F+ L H +H G
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRG 38
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.028
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 343
KP+KC C A + K +LN HL H+ K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.6 bits (63), Expect = 0.51
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEK 315
++C QC A + K +L H H GEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.6 bits (55), Expect = 6.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVK 399
P+ C +CS + K+ LN H + H G K
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 31.3 bits (70), Expect = 0.052
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 343
KP+ C +C + F+ G L H+ H+ K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.7 bits (66), Expect = 0.18
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVK 399
P+ C+ C + F+ L RH +IH G K
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.8 bits (61), Expect = 0.74
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 257 IKPYVCEICSKAFTQQYNLKHHLLLH 282
+KPYVC C + F L+ H+ +H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
Score = 27.4 bits (60), Expect = 1.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEK 315
+ C C + F+ G L +H +H GEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.3 bits (57), Expect = 2.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 398 VKPFACTVCNKSFLQKTQLQNHLYTHSKVK 427
+KP+ C C + F LQ H+ H+ K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.6 bits (76), Expect = 0.12
Identities = 16/144 (11%), Positives = 33/144 (22%), Gaps = 20/144 (13%)
Query: 259 PYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFK 318
PY +I ++ + L+ N D + + V S
Sbjct: 101 PYEGQISTQ---DKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVIS---------- 147
Query: 319 CSYCPK---AFSHKGHL----NEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 371
+ AF H + + + + + K H N G
Sbjct: 148 REEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEK 207
Query: 372 PHTCLECSKCFSTKSELNRHAQIH 395
+ + +L +
Sbjct: 208 RLQREKSEQVLDNPEDLRGPIHLS 231
Score = 30.6 bits (68), Expect = 1.2
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 375 CLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHL 420
+ K + S+ H + G K + L+ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
Score = 29.0 bits (64), Expect = 3.6
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 251 QTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 282
+ RG K E + +L+ + L
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 30.0 bits (68), Expect = 0.14
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 312 GGEKPFKCSY--CPKAFSHKGHLNEHLYTHS 340
G +K C C K + HL HL H+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 28.9 bits (65), Expect = 0.41
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 289 FRCD--QCGKAFSRKGHLVQHSFVHGGEK 315
C CGK + + HL H H GE+
Sbjct: 9 HICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.7 bits (62), Expect = 1.0
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 340 SENKCFQCKY--CPKTFTLRKHLKAHTNKHEG 369
+ K C C K + HL+AH H G
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
Score = 26.2 bits (58), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 258 KPYVCEI--CSKAFTQQYNLKHHLLLH 282
K ++C I C K + + +L+ HL H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 25.8 bits (57), Expect = 4.8
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 396 GGVKPFACTV--CNKSFLQKTQLQNHLYTHS 424
G K C + C K + + + L+ HL H+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 29.1 bits (65), Expect = 0.25
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 401 FACTVCNKSFLQKTQLQNHLYTHSKVKP 428
FAC C K F++ L H+ H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 28.3 bits (63), Expect = 0.55
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 317 FKCSYCPKAFSHKGHLNEHLYTHSENK 343
F C CPK F HL++H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
Score = 28.3 bits (63), Expect = 0.59
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFK 318
F C +C K F R HL +H +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 30.6 bits (69), Expect = 0.26
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 401 FACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKH 447
F C C +S ++K Q++ H+ + +C C K F + Y H
Sbjct: 11 FTCNACGES-VKKIQVEKHVSNCRNCECLSCIDCGKDF-WGDDYKSH 55
Score = 28.3 bits (63), Expect = 1.6
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 345 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKS 386
F C C ++ + ++ H + +C++C K F
Sbjct: 11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWGDD 51
Score = 27.1 bits (60), Expect = 4.4
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAF---SHKGH 331
F C+ CG++ +K + +H + C C K F +K H
Sbjct: 11 FTCNACGES-VKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSH 55
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.27
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 398 VKPFACTVCNKSFLQKTQLQNHLYTHSKVK 427
K F C CNK F K LQ HL H+ K
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.5 bits (60), Expect = 1.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 340 SENKCFQCKYCPKTFTLRKHLKAHTNKHEG 369
S K F C+YC K F + L+AH H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 27.1 bits (59), Expect = 1.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 343
K F C YC K F K L HL H+ K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.7 bits (58), Expect = 2.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 157 HRQVFTCEVCMRSFNDRKEFNEHIMKHEKEK 187
++FTCE C + F + H+ H EK
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.7 bits (58), Expect = 2.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 104 VQVFTCEVCQQAFTRNADLKVHSMVH 129
++FTCE C + F L+ H +H
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 26.4 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 287 SLFRCDQCGKAFSRKGHLVQHSFVHGGEK 315
+F C+ C K F K L H +H EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 3.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 252 TSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 282
+S K + CE C+K F +++L+ HL +H
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 32.3 bits (71), Expect = 0.39
Identities = 41/266 (15%), Positives = 67/266 (25%), Gaps = 29/266 (10%)
Query: 182 KHEKEKLFSCNFC-LKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFLYY 240
H K+ +C C + F + + + K C K + CV +
Sbjct: 22 IHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVRCHS 81
Query: 241 LSQGELDSHVQ---------TSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRC 291
S + ++ H + C C + G S C
Sbjct: 82 GSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKGKSCGAC 141
Query: 292 DQCGKAFSRKGHLVQHSFVHGGEKPFKCS---YCPKAFSHKGHLNEHLYTHSENKCFQCK 348
AF+ G+ + K AFSH+ HL + +C
Sbjct: 142 HNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMY----------KCN 191
Query: 349 YCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNK 408
C K + +C C S + + H G+KP T
Sbjct: 192 ECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTS 251
Query: 409 SFLQKTQLQNHLYTHSKVKPYNCGIC 434
H + + C C
Sbjct: 252 VGEAYFDHDIH------LSMFKCADC 271
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 28.5 bits (63), Expect = 0.39
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 399 KPFACTVCNKSFLQKTQLQNHLYTH 423
KP+ C C K F+Q +QL NH+ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 27.0 bits (59), Expect = 1.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLH 282
KPYVCE C K F Q L +H+ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 31.0 bits (69), Expect = 0.40
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 478 QQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIH 511
+ Q P A +P P PP P H
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAH 123
Score = 30.2 bits (67), Expect = 0.95
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 449 EIVHGVITSNSANMNIPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPP 500
EI++ ++ + + TP PP AH+PPP ++
Sbjct: 83 EIINILVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.3 bits (67), Expect = 0.43
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 242 SQGELDSHVQTSHRGIKPYVCEICSKAFTQQY-NLKHHLLLHGDGNSLFRCDQCGKAFSR 300
G + Q + VC C+ + LK H+ + +C C K F
Sbjct: 7 GPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKS 66
Query: 301 KGHLVQHSFVHGGEKP 316
K L H+ KP
Sbjct: 67 KAGLNYHTMAEHSAKP 82
Score = 29.9 bits (66), Expect = 0.57
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 235 CVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLL 280
C + + L H++ + C+ C K F + L +H +
Sbjct: 30 CNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 28.4 bits (62), Expect = 1.9
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 376 LECSKC----FSTKSELNRHAQI-HGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 428
C C T L +H ++ C C K F K L H KP
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 27.2 bits (59), Expect = 5.5
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 107 FTCEVCQQAFTRN-ADLKVH-SMVHKIAQLHKCELCYKMFSDKLLYEKHKMV 156
C C + LK H + K+ KC+ C K F K H M
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 26.8 bits (58), Expect = 6.5
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 185 KEKLFSCNFCLKPFLRKDL--LEAHVNSVHKDVKKYNCEECDKYYLSQGGV 233
+ C C RK L L+ H+ K C+ C K + S+ G+
Sbjct: 21 ERGEAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGL 70
Score = 26.8 bits (58), Expect = 7.3
Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 289 FRCDQCGKAFSR--KGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 343
C C + G + KC +C K F K LN H K
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 28.3 bits (63), Expect = 0.45
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 317 FKCSYCPKAFSHKGHLNEHLYTHSENK 343
F C CPK F HL H+ H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 27.9 bits (62), Expect = 0.59
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 401 FACTVCNKSFLQKTQLQNHLYTHSKVK 427
FAC C K F++ L H+ H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 27.9 bits (62), Expect = 0.67
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEK 315
F C +C K F R HL H +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 31.6 bits (71), Expect = 0.59
Identities = 15/58 (25%), Positives = 19/58 (32%)
Query: 451 VHGVITSNSANMNIPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQ 508
VH VI + I + +TP Q Q PP P PP + V
Sbjct: 22 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 79
Score = 29.3 bits (65), Expect = 2.7
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 464 IPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPS 513
+ P+ ++ + P +Q QP +++ P
Sbjct: 58 VVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (62), Expect = 0.65
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 343 KCFQCKYCPKTFTLRKHLKAHTNKHEG 369
K ++C C TF LRKHL H H
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHAA 37
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.65
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 315 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 343
KPFKCS C A K +L H+ HS K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 27.2 bits (59), Expect = 1.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 399 KPFACTVCNKSFLQKTQLQNHLYTHSKVK 427
KPF C++C + K+ L+ H+ HS K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.8 bits (58), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLH 282
KP+ C +C A + NLK H+ H
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 29.0 bits (64), Expect = 0.73
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 429 YNCGICAKSFVQRNTYIKHLEIVHGVITSNSANMNIPLQHITPQVQLHQQQQQQPP 484
CG+C K F N ++ E HGV + +++P P++ + P
Sbjct: 14 LPCGLCGKVFTDANR-LRQHEAQHGVTSLQLGYIDLP----PPRLGENGLPISGPS 64
Score = 28.3 bits (62), Expect = 1.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 286 NSLFRCDQCGKAFSRKGHLVQHSFVHG 312
+ C CGK F+ L QH HG
Sbjct: 11 AGILPCGLCGKVFTDANRLRQHEAQHG 37
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.2 bits (63), Expect = 0.75
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 343 KCFQCKYCPKTFTLRKHLKAHTNKH 367
+ + C +C + F + L H N H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 26.3 bits (58), Expect = 3.6
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 315 KPFKCSYCPKAFSHK----GHLNEH 335
+ + CS+C + F GH+N H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.2 bits (62), Expect = 0.76
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 289 FRCDQCGKAFSRKGHLVQHSFVHGGEK 315
+C +CG+ F + L++H +H G+K
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.9 bits (61), Expect = 1.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 372 PHTCLECSKCFSTKSELNRHAQIHGGVK 399
H C EC + F L H +H G K
Sbjct: 12 SHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.5 bits (55), Expect = 6.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLH 282
K + C C + F Q +L H +LH
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLH 35
Score = 25.2 bits (54), Expect = 8.5
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 424 SKVKPYNCGICAKSFVQRNTYIKHLEIVH 452
S+ K + C C + F Q + I+H +++H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEH-QVLH 35
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 29.0 bits (65), Expect = 1.0
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 136 KCELCYKMFSDKLLYEKHKMVHRQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 195
+C C + +++ K H F C VC F K C C
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRV------TFNGKECMCQKCS 70
Query: 196 KP 197
P
Sbjct: 71 LP 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 1.1
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 40 EKKAKKTKVPMVQVADF--------VSG-VWSLEYVEQS-KEKKAKKTKVPMVQVLEYVE 89
E+ K+T +V++ ++ +G + +L+ V K +K + +Q +E
Sbjct: 1831 ERVGKRTGW-LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Query: 90 QSKEK 94
+ +
Sbjct: 1890 EVEGH 1894
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.4 bits (60), Expect = 1.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 260 YVCEICSKAFTQQYNLKHHLLLHGD 284
Y C IC + F + + H+L+HGD
Sbjct: 10 YDCHICERKFKNELDRDRHMLVHGD 34
Score = 25.1 bits (54), Expect = 8.0
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 134 LHKCELCYKMFSDKLLYEKHKMVH 157
L+ C +C + F ++L ++H +VH
Sbjct: 9 LYDCHICERKFKNELDRDRHMLVH 32
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 30.9 bits (69), Expect = 1.3
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 465 PLQHITPQVQLHQQQQQQPPPQ-PAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQ 523
P T + + +QP P+ PA PP + +P H + ++ + + +++
Sbjct: 78 PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIKR 137
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 27.1 bits (59), Expect = 1.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 398 VKPFACTVCNKSFLQKTQLQNHLYTHS 424
++P++C+VC K F K Q++ H H+
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 26.7 bits (58), Expect = 1.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 370 VLPHTCLECSKCFSTKSELNRHAQIHGG 397
+ P++C C K FS K ++ H ++H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.5 bits (55), Expect = 5.5
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 257 IKPYVCEICSKAFTQQYNLKHHLLLH 282
++PY C +C K F+ ++ ++ H +H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVH 26
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLHGD 284
K ++C++C K F + LK H LLH
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTA 34
Score = 26.7 bits (58), Expect = 2.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 291 CDQCGKAFSRKGHLVQHSFVHGGE 314
CD CGK F KG L H +H +
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.2 bits (54), Expect = 8.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 135 HKCELCYKMFSDKLLYEKHKMVH 157
H C++C K F K + HK++H
Sbjct: 10 HLCDMCGKKFKSKGTLKSHKLLH 32
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein
interaction, signaling protein; 2.85A {Homo sapiens}
SCOP: d.217.1.2
Length = 99
Score = 28.7 bits (64), Expect = 1.8
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 329 KGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 375
KG L LY+ C QC C + K + H+ H+ + TC
Sbjct: 15 KGLLVPELYSSPSAACIQCLDCRLMYPPHKFV-VHS--HKALENRTC 58
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 2.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 258 KPYVCEI--CSKAFTQQYNLKHHLLLHGD 284
+PY C+ C KAF + ++L H H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 26.5 bits (58), Expect = 2.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 314 EKPFKCSY--CPKAFSHKGHLNEHLYTHSEN 342
++P+ C + C KAF L H +H E
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 25.4 bits (55), Expect = 6.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 289 FRCD--QCGKAFSRKGHLVQHSFVH 311
+ CD C KAF R L++H H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 25.0 bits (54), Expect = 7.5
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 107 FTCEV--CQQAFTRNADLKVHSMVH 129
++C+ C +AF RN DL H H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSH 28
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 30.0 bits (66), Expect = 2.1
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 460 ANMNIP---LQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQH 516
A+ N P ++++ + + + + P + P Q+
Sbjct: 191 ASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQ--PQFQN 248
Query: 517 IQQNLQQN---IQQNLQQNIQQNIQHLLQQNMH 546
++Q +QQN + LQQ Q+N Q LLQQ
Sbjct: 249 MRQVIQQNPALLPALLQQLGQENPQ-LLQQISR 280
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 30.1 bits (66), Expect = 2.2
Identities = 29/254 (11%), Positives = 72/254 (28%), Gaps = 19/254 (7%)
Query: 57 VSGVWSLEYVEQSKEKKAKKTKVPMVQVLEYVEQSKEKKAKKTKVPMVQVFTCEVCQQAF 116
VS W ++ + + + V ++++ +++K+ + + +
Sbjct: 190 VSITWVSLSEKEDIYQVTENAGLSDEDVKKWLKFAEKKENSRVLERIAIYPLLVKILDSL 249
Query: 117 TRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQV----FTCEVCMRSFND 172
+ + + KC +C + + H + C +C+
Sbjct: 250 GERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKRYY 309
Query: 173 RKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGG 232
+K+ + L K+ + KD+ E + +
Sbjct: 310 PVWIRSKTG----QKIRFESVVDVALLYKNWRKIFDEKYGKDLVSKAREVSEDFVKDNML 365
Query: 233 VGCVFLYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYN-----LKHHLLLHGDGNS 287
V Y + S + + I + Y K++ +L DG+
Sbjct: 366 VDSDLYYSSTWESGLSKKLKNKKEIDEEKVKEVVDFLNAAYKEIGNPPKYYAILVMDGDD 425
Query: 288 LFRCDQCGKAFSRK 301
+ GK S +
Sbjct: 426 M------GKVISGE 433
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA
decay, P-BODY, gene regulation; 1.9A {Drosophila
melanogaster}
Length = 139
Score = 29.1 bits (65), Expect = 2.2
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 510 IHPSIQHIQQNLQQNIQQNLQQNIQQNIQHLLQQNMHVANS 550
+ L +N QQ ++ + + + ++ M +
Sbjct: 93 TREHAPKVLTELYRNCQQFIKNSPKNSQFSNVRLLMKAIIT 133
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.9 bits (56), Expect = 3.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 314 EKPFKCSYCPKAFSHKGHLNEHLYTH 339
EKPF CS CP+ + +HL TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.7 bits (58), Expect = 3.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 258 KPYVCEICSKAFTQQYNLKHH 278
KPY C+IC K + + L +H
Sbjct: 6 KPYACDICGKRYKNRPGLSYH 26
Score = 25.5 bits (55), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 399 KPFACTVCNKSFLQKTQLQNHLYTHS 424
KP+AC +C K + + L H Y HS
Sbjct: 6 KPYACDICGKRYKNRPGLSYH-YAHS 30
Score = 25.5 bits (55), Expect = 8.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 314 EKPFKCSYCPKAFSHKGHLNEHLYTHS 340
+KP+ C C K + ++ L+ H Y HS
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH-YAHS 30
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 29.7 bits (65), Expect = 3.6
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 465 PLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQN 524
P Q + QQ +Q PA + Q + + QN S+Q ++
Sbjct: 584 PETPEEQQWLVEAQQAKQGQQDPA-MVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVEAQ 642
Query: 525 IQQNLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMHQ 561
Q N + + L + ++ + +
Sbjct: 643 NQLNAARIAEIFNNMDLSKQSEFREFLKTVASFQQDR 679
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 29.2 bits (66), Expect = 3.8
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 281 LHGDGNSLF--RCDQCGKAFSRKGHLVQHSFVHGGEKPFKCS 320
LHG ++F C C K ++Q + + P +C
Sbjct: 148 LHG---NVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP 186
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 25.9 bits (56), Expect = 4.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 258 KPYVCEICSKAFTQQYNLKHHLLLH 282
KP C +C KAFTQ +L H+ H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 25.1 bits (54), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 291 CDQCGKAFSRKGHLVQHSFVHGGEK 315
C CGKAF++ L+ H H GEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 29.3 bits (63), Expect = 4.3
Identities = 29/216 (13%), Positives = 47/216 (21%), Gaps = 23/216 (10%)
Query: 291 CDQC-GKAFSRKGHLVQHSFVHGGEK--PFKCSYC---------------PKAFSHKGHL 332
C +C +S + +HGG + C C A H H
Sbjct: 253 CIKCHSTNYSDTSSTAKPLALHGGRRIGIANCQVCHTSYSKDPETGSPLDMGAMVHAIHK 312
Query: 333 NEHLYTHSENKCFQC----KYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSEL 388
+ + ++ + LP + C C ST +
Sbjct: 313 GTYAMVGYSGTAYDFSGTMAKAAAESGYPQYREGKDVSERVTLPVSIGNCQSCHSTDDKG 372
Query: 389 NRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVK-PYNCGICAKSFVQRNTYIKH 447
A K AC C+ S L K G +
Sbjct: 373 PVDAASFKHHKGLACASCHMSGFNPVDNSEWLTPPEGQKDRGFVGNYFHYYATPEIDGIP 432
Query: 448 LEIVHGVITSNSANMNIPLQHITPQVQLHQQQQQQP 483
+ V + Q + H +
Sbjct: 433 GVNLVHVFQNGGCASCHAEQGEEGSAKYHLAKANAT 468
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.4 bits (55), Expect = 4.9
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 289 FRCDQCGKAFSRKGHLVQH 307
F C C K F R L +H
Sbjct: 3 FACPACPKRFMRSDALSKH 21
Score = 25.1 bits (54), Expect = 7.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 317 FKCSYCPKAFSHKGHLNEHLYT 338
F C CPK F L++H+ T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
Score = 25.1 bits (54), Expect = 7.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 401 FACTVCNKSFLQKTQLQNHLYT 422
FAC C K F++ L H+ T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 28.8 bits (63), Expect = 5.3
Identities = 10/37 (27%), Positives = 11/37 (29%)
Query: 476 HQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHP 512
PPQ +PPPQ Q I Q
Sbjct: 16 VNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural
genomics, MCSG, S genomics, unknown function; 2.82A
{Synechococcus SP}
Length = 150
Score = 28.1 bits (62), Expect = 5.4
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 494 QIQHIPPPIQHQPVQNIHPSIQHIQQNLQQNIQQNLQQNIQQNIQHLLQQN 544
+ Q + ++ Q + P +Q N+QQ + + +Q L QQ
Sbjct: 51 EGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQA 101
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 28.1 bits (62), Expect = 5.6
Identities = 14/110 (12%), Positives = 23/110 (20%), Gaps = 15/110 (13%)
Query: 289 FRCDQCGKAFSRKGH---------LVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 339
+C C G L ++ ++ CS C ++ +
Sbjct: 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNV 92
Query: 340 SENKCFQCKYCPKTFTLRKHLKAHTNK------HEGVLPHTCLECSKCFS 383
KCF C C L + L
Sbjct: 93 YHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGG 142
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 28.7 bits (63), Expect = 5.7
Identities = 12/96 (12%), Positives = 23/96 (23%)
Query: 465 PLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQN 524
PL IT + QQ P P Q + +
Sbjct: 4 PLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAV 63
Query: 525 IQQNLQQNIQQNIQHLLQQNMHVANSSHHMSQQRMH 560
+ +++ IQ L+ + + +
Sbjct: 64 PTIHFKESPFYKIQRLIPELVMNVEVTGGRGMCSAK 99
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex,
methylation, mRNA processing, mRNA nucleus,
phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo
sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A
2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Length = 88
Score = 26.9 bits (59), Expect = 5.7
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 485 PQPAHIPPPQIQHIPPPIQHQPVQN-IHPSIQHIQQNLQQNIQQNLQQNIQQNIQHLLQ 542
P + + + PP Q Q + + P IQ + L I L + + H+L+
Sbjct: 2 PLGSPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLE 60
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 25.4 bits (55), Expect = 5.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 160 VFTC--EVCMRSFNDRKEFNEHIMKH 183
V+ C E C RSFNDR++ N H H
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIH 27
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 26.7 bits (59), Expect = 5.8
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 136 KCELCYKMFSDKLLYEKHKMVHRQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFC 194
C C + + + H + F C C D + + L+ C C
Sbjct: 17 FCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYAL----VQHATLY-CGKC 70
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 28.6 bits (62), Expect = 6.2
Identities = 32/244 (13%), Positives = 69/244 (28%), Gaps = 27/244 (11%)
Query: 137 CELCYKMFSDKLLYEKHKMVHR-QVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 195
C C+ + K + K + TC C +E M + +
Sbjct: 145 CIDCHVDVNKKDKADHTKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAGRPS- 203
Query: 196 KPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGGVGCVFLYYLSQGELDSHVQTSHR 255
H +++ + +++G C H ++
Sbjct: 204 -----------HALDYTANIETTVWATMPQREVAEGCTMCHTNQNKCDNCHTRHEFSAAE 252
Query: 256 GIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 315
KP C C + + HG L ++ + + +F GG+
Sbjct: 253 SRKPEACATCHSGVDHNNWEAYTMSKHGK---LAEMNRDKWNWEVRLK---DAFSKGGQN 306
Query: 316 PFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTN-KHEGVLPHT 374
C+ C + + YTH+ + + P + +++ + + T
Sbjct: 307 APTCAACHMEYEGE-------YTHNITRKTRWANYPFVPGIAENITSDWSEARLDSWVLT 359
Query: 375 CLEC 378
C +C
Sbjct: 360 CTQC 363
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 27.2 bits (60), Expect = 7.2
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 508 QNIHPSIQHIQQNLQQNIQQNLQQNIQQNIQHLLQQNMH 546
QNI P +Q + L+ QQ LQ +QQ + L+
Sbjct: 2 QNIPPQVQAMLGQLES-YQQQLQLVVQQKQKVQLELTEA 39
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.2 bits (54), Expect = 7.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 189 FSCNFCLKPFLRKDLLEAHVNSVHKDVK 216
+ C CLK F+ L +H+ VH +
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 26.7 bits (58), Expect = 8.2
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 134 LHKCELCYKMFSDKLLYEKHKMVHRQVFTCEVCMRSFNDR-----KEFNEHIMKHEKEKL 188
+H C+ C K H + C + D+ + + I + + L
Sbjct: 1 VHFCDKCGLPIKVYGRMIPCK--HVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSL 58
Query: 189 FSC---NFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECD 224
F C C + +L + L+AH+N H K
Sbjct: 59 FMCSIVQGCKRTYLSQRDLQAHINHRHMRAGKPVTRASL 97
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 28.3 bits (62), Expect = 8.5
Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 3/148 (2%)
Query: 101 VPMVQVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQV 160
V + + ++ + + N V S+V I K+ L + + +
Sbjct: 346 VGPLTAYQYQLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSM 405
Query: 161 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNC 220
C+V S + + + + E + CN C + L N + C
Sbjct: 406 KHCQVQRESLVRAGKKIAYQGRVKDEPAYYCNEC-DVEVFNILFVTSENGSRNTYLVH-C 463
Query: 221 EECDKYYLSQGGVGCVFLYYLSQGELDS 248
E C + S G G V L EL
Sbjct: 464 EGCAR-RRSAGLQGVVVLEQYRTEELAQ 490
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.1 bits (57), Expect = 9.0
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 314 EKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEG 369
+ C +C S L EH + + C C L K LK H
Sbjct: 15 LRLAVCQHCDLELSILK-LKEHED-YCGARTELCGNC-GRNVLVKDLKTHPEVCGR 67
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 25.0 bits (54), Expect = 9.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 340 SENKCFQCKY--CPKTFTLRKHLKAHTNKHEGVL 371
S++K F C C + FT HL H +KHE L
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL 35
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.9 bits (61), Expect = 9.5
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 387 ELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHL 420
+ K C C++ F + ++HL
Sbjct: 279 HSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHL 312
>3hhc_A Interleukin-28B; interferon, IL-22, antiviral, antiviral defense,
cytokine, secreted; 2.80A {Homo sapiens}
Length = 196
Score = 27.5 bits (60), Expect = 9.7
Identities = 15/103 (14%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 448 LEIVHGVITSNSANMNIPLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPV 507
L+++ ++ A ++ Q + + Q + PQP P + +
Sbjct: 102 LKVLEATADTDPALGDVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGR----------- 150
Query: 508 QNIHPSIQHIQQNLQQNIQQNLQQNIQQNIQHLLQQNMHVANS 550
+H + +Q+ ++ L+ ++ N+ LL ++++ S
Sbjct: 151 --LHHWLHRLQEAPKKESPGCLEASVTFNLFRLLTRDLNCVAS 191
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 27.7 bits (61), Expect = 9.8
Identities = 6/72 (8%), Positives = 15/72 (20%)
Query: 465 PLQHITPQVQLHQQQQQQPPPQPAHIPPPQIQHIPPPIQHQPVQNIHPSIQHIQQNLQQN 524
+ Q+ QP P + + + P + + +
Sbjct: 8 TFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPK 67
Query: 525 IQQNLQQNIQQN 536
+ Q
Sbjct: 68 KTPPPKPKKTQK 79
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.4 bits (57), Expect = 9.8
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 376 LECSKC----FSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 428
+ C C T L +H + + F C C K ++ H+ + P
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.414
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,274,662
Number of extensions: 466793
Number of successful extensions: 4784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3841
Number of HSP's successfully gapped: 1485
Length of query: 579
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 480
Effective length of database: 3,937,614
Effective search space: 1890054720
Effective search space used: 1890054720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.6 bits)