BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11694
(655 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS- 354
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 355 --NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSAYRAATCRKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GEK
Sbjct: 178 EYWLVKNSWGHNFGEK 193
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDMS---NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 44 KLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 101 YDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GEK
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEK 193
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQN 52
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCRKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GEK
Sbjct: 178 EYWLVKNSWGHNFGEK 193
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 44 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 101 YDSKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GEK
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEK 193
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQN 52
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 44 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 101 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GE+
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 193
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 51
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q LVDC
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 120
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 121 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 180
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 181 EYWLVKNSWGHNFGEE 196
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 47 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 103
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 104 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 161
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GE+
Sbjct: 162 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 196
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q+
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQN 55
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 44 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 101 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GE+
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 193
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQN 52
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 44 KLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 101 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GE+
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 193
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQN 52
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q LVDC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 118
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 178
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 179 EYWLVKNSWGHNFGEE 194
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 45 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 101
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 102 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 159
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GE+
Sbjct: 160 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQN 53
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 112/196 (57%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q LVDC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 118
Query: 413 YGEEEEMKKWVATRGPLSVGMNA---------NGLFYYSGGVIDLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A +G++Y ++N + YG
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 178
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 179 EYWLVKNSWGHNFGEE 194
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 45 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 101
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 102 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 159
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GE+
Sbjct: 160 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C CWAFSAVG +EA ++ L LS Q+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQN 53
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q LVDC
Sbjct: 99 LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 158
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 159 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 215
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 216 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 275
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 276 EYWLVKNSWGHNFGEE 291
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDMS---NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
KL L+ + LVDC N GCNGG M A QYIIDN G+ SD +YPYKA + +
Sbjct: 142 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 198
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
Y+ +PYG E+ +K+ VA +GP+SVG++A F Y GV + C
Sbjct: 199 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 256
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH +++VGYG+ K+ YW+VKNSWG ++GE+
Sbjct: 257 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 291
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q
Sbjct: 99 LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQ 149
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 119/212 (56%), Gaps = 28/212 (13%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
DLP + DWR +G ++ VK+QGKC CWAFS V VE ++AI+ SL LS Q+L+DCD +
Sbjct: 3 DLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA 62
Query: 355 -NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXX----YS 409
N GC GG MD+A +YI +NGG++++ AYPY+A+ RG +
Sbjct: 63 DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA---RGTCNVARAAQNSPVVVHIDGHQ 119
Query: 410 RIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGV--------IDLNQRLYGTSI-- 457
+P EE++ + VA + P+SV + A+G +YS GV +D + G +
Sbjct: 120 DVPANSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAE 178
Query: 458 ---PYWIVKNSWGSDWGE----KVEDKVGSSG 482
YW VKNSWG WGE +VE G+SG
Sbjct: 179 DGKAYWTVKNSWGPSWGEQGYIRVEKDSGASG 210
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 19/170 (11%)
Query: 490 LTGVLPSKLSRLATEKLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE 548
+ + L L+ ++L+DCD + N GC GG MD+A +YI +NGG++++ AYPY+A+
Sbjct: 40 INAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA--- 96
Query: 549 RGCLXXXXXXXXXXXXX----YSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGG 602
RG + +P EE++ + VA + P+SV + A+G +YS G
Sbjct: 97 RGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQ-PVSVAVEASGKAFMFYSEG 155
Query: 603 VIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
V C + +H + +VGYG E DG + YW VKNSWG WGE+
Sbjct: 156 VFTGE---CGTE-LDHGVAVVGYGVAE--DGKA--YWTVKNSWGPSWGEQ 197
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
DLP + DWR +G ++ VK+QGKC CWAFS V VE ++AI+ +L LS Q
Sbjct: 3 DLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQE 55
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q LVDC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 118
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 178
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 179 EYWLVKNSWGHNFGEE 194
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 469 DWGEK---VEDKVGSSGNRTRDLELTGVLPS-------KLSRLATEKLVDCDM---SNGG 515
DW EK E K S + G L + KL L+ + LVDC N G
Sbjct: 7 DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 66
Query: 516 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 575
CNGG M A QYIIDN G+ SD +YPYKA + + Y+ +PYG E+
Sbjct: 67 CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELPYGRED 123
Query: 576 EMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDG 633
+K+ VA +GP+SVG++A F Y GV + C NH +++VGYG+ K+
Sbjct: 124 VLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSCTQNV-NHGVLVVGYGDLNGKE- 179
Query: 634 TSIPYWIVKNSWGSDWGEK 652
YW+VKNSWG ++GE+
Sbjct: 180 ----YWLVKNSWGHNFGEE 194
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQN 53
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 469 DWGEK---VEDKVGSSGNRTRDLELTGVLPS-------KLSRLATEKLVDCDM---SNGG 515
DW EK E K S + G L + KL L+ + LVDC N G
Sbjct: 6 DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 516 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 575
CNGG M A QYIIDN G+ SD +YPYKA + + Y+ +PYG E+
Sbjct: 66 CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELPYGRED 122
Query: 576 EMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDG 633
+K+ VA +GP+SVG++A F Y GV + C NH +++VGYG+ K+
Sbjct: 123 VLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSCTQNV-NHGVLVVGYGDLNGKE- 178
Query: 634 TSIPYWIVKNSWGSDWGEK 652
YW+VKNSWG ++GE+
Sbjct: 179 ----YWLVKNSWGHNFGEE 193
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQN 52
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 113/202 (55%), Gaps = 15/202 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P A DWRA G ++ VK+QG+C CWAFSA+G VE + G+ LT LS Q LV CD ++
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GC+GG M++A ++I+ +NG V ++ +YPY + E + +P
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGV--------IDLNQRLYG----TSIPYWIV 462
+E ++ W+A GP++V ++A+ Y+GGV +D L G ++PYWI+
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWII 180
Query: 463 KNSWGSDWGEKVEDKVGSSGNR 484
KNSW + WGE+ ++ N+
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQ 202
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 12/157 (7%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXX 555
L+ L+ + LV CD ++ GC+GG M++A ++I+ +NG V ++ +YPY + E
Sbjct: 45 LTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS 104
Query: 556 XXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
+ +P +E ++ W+A GP++V ++A+ Y+GGV+ C +
Sbjct: 105 GHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQ 159
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
+H +++VGY D ++PYWI+KNSW + WGE+
Sbjct: 160 LDHGVLLVGY-----NDSAAVPYWIIKNSWTTQWGEE 191
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
P A DWRA G ++ VK+QG+C CWAFSA+G VE + G+ LT LS Q
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQ 51
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q LVDC
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 119
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 120 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 179
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 180 EYWLVKNSWGHNFGEE 195
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 469 DWGEK---VEDKVGSSGNRTRDLELTGVLPS-------KLSRLATEKLVDCDM---SNGG 515
DW EK E K S + G L + KL L+ + LVDC N G
Sbjct: 8 DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 67
Query: 516 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 575
CNGG M A QYIIDN G+ SD +YPYKA + + Y+ +PYG E+
Sbjct: 68 CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELPYGRED 124
Query: 576 EMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDG 633
+K+ VA +GP+SVG++A F Y GV + C NH +++VGYG+ K+
Sbjct: 125 VLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSCTQNV-NHGVLVVGYGDLNGKE- 180
Query: 634 TSIPYWIVKNSWGSDWGEK 652
YW+VKNSWG ++GE+
Sbjct: 181 ----YWLVKNSWGHNFGEE 195
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q+
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQN 54
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 113/202 (55%), Gaps = 15/202 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P A DWRA G ++ VK+QG+C CWAFSA+G VE + G+ LT LS Q LV CD ++
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GC+GG M++A ++I+ +NG V ++ +YPY + E + +P
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGV--------IDLNQRLYG----TSIPYWIV 462
+E ++ W+A GP++V ++A+ Y+GGV +D L G ++PYWI+
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYWII 180
Query: 463 KNSWGSDWGEKVEDKVGSSGNR 484
KNSW + WGE+ ++ N+
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQ 202
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 89/157 (56%), Gaps = 12/157 (7%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXX 555
L+ L+ + LV CD ++ GC+GG M++A ++I+ +NG V ++ +YPY + E
Sbjct: 45 LTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS 104
Query: 556 XXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
+ +P +E ++ W+A GP++V ++A+ Y+GGV+ C +A
Sbjct: 105 GHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEA 159
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
+H +++VGY D ++PYWI+KNSW + WGE+
Sbjct: 160 LDHGVLLVGY-----NDSAAVPYWIIKNSWTTQWGEE 191
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
P A DWRA G ++ VK+QG+C CWAFSA+G VE + G+ LT LS Q
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQ 51
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
N GCNGG M A QYIIDN G+ SD +YPYKA + + Y+ +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
YG E+ +K+ VA +GP+SVG++A F Y GV ++N + YG
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 469 DWGEK---VEDKVGSSGNRTRDLELTGVLPS-------KLSRLATEKLVDCDM---SNGG 515
DW EK E K S + G L + KL L+ + LVDC N G
Sbjct: 6 DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 516 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 575
CNGG M A QYIIDN G+ SD +YPYKA + + Y+ +PYG E+
Sbjct: 66 CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLK---CQYDSKYRAATCSKYTELPYGRED 122
Query: 576 EMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDG 633
+K+ VA +GP+SVG++A F Y GV + C NH +++VGYG+ K+
Sbjct: 123 VLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSCTQNV-NHGVLVVGYGDLNGKE- 178
Query: 634 TSIPYWIVKNSWGSDWGEK 652
YW+VKNSWG ++GE+
Sbjct: 179 ----YWLVKNSWGHNFGEE 193
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G +++VK QG C WAFSAVG +EA ++ L LS Q+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQN 52
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 15/202 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P A DWRA G ++ VK+QG+C CWAFSA+G VE + G+ LT L+ Q LV CD ++
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GC+GG M++A ++I+ +NG V ++ +YPY + E + +P
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGVID--LNQRL----------YGTSIPYWIV 462
+E ++ W+A GP++V ++A+ Y+GGV+ ++++L G ++PYWI+
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWII 180
Query: 463 KNSWGSDWGEKVEDKVGSSGNR 484
KNSW + WGE+ ++ N+
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQ 202
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 12/157 (7%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXX 555
L+ LA + LV CD ++ GC+GG M++A ++I+ +NG V ++ +YPY + E
Sbjct: 45 LTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS 104
Query: 556 XXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
+ +P +E ++ W+A GP++V ++A+ Y+GGV+ C +
Sbjct: 105 GHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQ 159
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
+H +++VGY DG ++PYWI+KNSW + WGE+
Sbjct: 160 LDHGVLLVGY-----NDGAAVPYWIIKNSWTTQWGEE 191
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
P A DWRA G ++ VK+QG+C CWAFSA+G VE + G+ LT L+ Q
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQ 51
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 15/202 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P A DWRA G ++ VK+QG+C CWAFSA+G VE + G+ LT L+ Q LV CD ++
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GC+GG M++A ++I+ +NG V ++ +YPY + E + +P
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGVID--LNQRL----------YGTSIPYWIV 462
+E ++ W+A GP++V ++A+ Y+GGV+ ++++L G ++PYWI+
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWII 180
Query: 463 KNSWGSDWGEKVEDKVGSSGNR 484
KNSW + WGE+ ++ N+
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQ 202
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 12/157 (7%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXX 555
L+ LA + LV CD ++ GC+GG M++A ++I+ +NG V ++ +YPY + E
Sbjct: 45 LTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS 104
Query: 556 XXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
+ +P +E ++ W+A GP++V ++A+ Y+GGV+ C +
Sbjct: 105 GHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQ 159
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
+H +++VGY DG ++PYWI+KNSW + WGE+
Sbjct: 160 LDHGVLLVGY-----NDGAAVPYWIIKNSWTTQWGEE 191
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
P A DWRA G ++ VK+QG+C CWAFSA+G VE + G+ LT L+ Q
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQ 51
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 105/193 (54%), Gaps = 18/193 (9%)
Query: 294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM 353
DDLP++ DWR G + VK QG C CWAFS V VE ++ I L LS QQLVDC
Sbjct: 1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT 60
Query: 354 SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
+N GC GG M+ A Q+I++NGG+ S++ YPY+ + G Y +P
Sbjct: 61 ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD---GICNSTVNAPVVSIDSYENVPS 117
Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFY--YSGGV------IDLNQRL----YGTS--IPY 459
E+ ++K VA + P+SV M+A G + Y G+ I N L YGT +
Sbjct: 118 HNEQSLQKAVANQ-PVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDF 176
Query: 460 WIVKNSWGSDWGE 472
WIVKNSWG +WGE
Sbjct: 177 WIVKNSWGKNWGE 189
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 15/161 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
++ L L+ ++LVDC +N GC GG M+ A Q+I++NGG+ S++ YPY+ + G
Sbjct: 42 IVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD---GIC 98
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRL 610
Y +P E+ ++K VA + P+SV M+A G + Y G+ +
Sbjct: 99 NSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ-PVSVTMDAAGRDFQLYRSGIFTGS--- 154
Query: 611 CNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
CN A NHAL +VGYG E KD +WIVKNSWG +WGE
Sbjct: 155 CNISA-NHALTVVGYGTENDKD-----FWIVKNSWGKNWGE 189
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 146 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
DDLP++ DWR G + VK QG C CWAFS V VE ++ I +L LS Q
Sbjct: 1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQ 54
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 135 bits (341), Expect = 6e-32, Method: Composition-based stats.
Identities = 77/188 (40%), Positives = 103/188 (54%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LPE DWR +G ++ VK QGKC CWAFS V VE+++ I+ +L LS QQLVDC+ N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
GC GG A QYIIDNGG+ ++ YPYKA + C Y +P+
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP--C---RAAKKVVRIDGYKGVPHCN 115
Query: 416 EEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------LNQR--LYGTSIPYWIVKNS 465
E +KK VA++ P V ++A+ +Y G+ LN + G YWIV+NS
Sbjct: 116 ENALKKAVASQ-PSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWKDYWIVRNS 174
Query: 466 WGSDWGEK 473
WG WGE+
Sbjct: 175 WGRYWGEQ 182
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L L+ ++LVDC+ N GC GG A QYIIDNGG+ ++ YPYKA + C
Sbjct: 45 LISLSEQQLVDCNKKNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP--C---RAA 99
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLCNPKA 615
Y +P+ E +KK VA++ P V ++A+ +Y G+ C K
Sbjct: 100 KKVVRIDGYKGVPHCNENALKKAVASQ-PSVVAIDASSKQFQHYKSGIF---SGPCGTKL 155
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH ++IVGY ++ YWIV+NSWG WGE+
Sbjct: 156 -NHGVVIVGYWKD---------YWIVRNSWGRYWGEQ 182
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LPE DWR +G ++ VK QGKC CWAFS V VE+++ I+ NL LS Q
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQ 52
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 135 bits (339), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/188 (40%), Positives = 103/188 (54%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LPE DWR +G ++ VK QG C CWAFS V VE+++ I+ +L LS Q+LVDCD N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
GC GG A QYII+NGG+ + YPYKA + C Y+ +P+
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP--C---QAASKVVSIDGYNGVPFCN 115
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVID------LNQ--RLYGTSIPYWIVKNS 465
E +K+ VA + P +V ++A+ + YS G+ LN + G YWIV+NS
Sbjct: 116 EXALKQAVAVQ-PSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQANYWIVRNS 174
Query: 466 WGSDWGEK 473
WG WGEK
Sbjct: 175 WGRYWGEK 182
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 72/195 (36%), Positives = 94/195 (48%), Gaps = 32/195 (16%)
Query: 462 VKN--SWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGG 519
VKN S GS W V S N+ R TG L S L+ ++LVDCD N GC GG
Sbjct: 16 VKNQGSCGSCWAFSTVSTV-ESINQIR----TGNLIS----LSEQELVDCDKKNHGCLGG 66
Query: 520 RMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKK 579
A QYII+NGG+ + YPYKA + C Y+ +P+ E +K+
Sbjct: 67 AFVFAYQYIINNGGIDTQANYPYKAVQGP--C---QAASKVVSIDGYNGVPFCNEXALKQ 121
Query: 580 WVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIP 637
VA + P +V ++A+ + YS G+ C K NH + IVGY
Sbjct: 122 AVAVQ-PSTVAIDASSAQFQQYSSGIF---SGPCGTKL-NHGVTIVGYQAN--------- 167
Query: 638 YWIVKNSWGSDWGEK 652
YWIV+NSWG WGEK
Sbjct: 168 YWIVRNSWGRYWGEK 182
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LPE DWR +G ++ VK QG C CWAFS V VE+++ I+ NL LS Q
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQ 51
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 109/194 (56%), Gaps = 19/194 (9%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-S 354
+P + DWR +G ++ VK+QG+C CWAFS + VE ++ I+ N L LS Q+LVDCD
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
N GCNGG MD A ++I GG+ ++ YPY+A + C + +P
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGT--CDVSKENAPAVSIDGHENVPEN 119
Query: 415 EEEEMKKWVATRGPLSVGMNANG--LFYYSGGVI------DLNQRL----YGTSI---PY 459
+E + K VA + P+SV ++A G +YS GV +L+ + YGT+I Y
Sbjct: 120 DENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKY 178
Query: 460 WIVKNSWGSDWGEK 473
W VKNSWG +WGEK
Sbjct: 179 WTVKNSWGPEWGEK 192
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 14/163 (8%)
Query: 493 VLPSKLSRLATEKLVDCDM-SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGC 551
+ +KL L+ ++LVDCD N GCNGG MD A ++I GG+ ++ YPY+A + C
Sbjct: 41 IKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGT--C 98
Query: 552 LXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQR 609
+ +P +E + K VA + P+SV ++A G +YS GV +
Sbjct: 99 DVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFTGS-- 155
Query: 610 LCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
C + +H + IVGYG DGT YW VKNSWG +WGEK
Sbjct: 156 -CGTEL-DHGVAIVGYG--TTIDGTK--YWTVKNSWGPEWGEK 192
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
+P + DWR +G ++ VK+QG+C CWAFS + VE ++ I+ N L LS Q
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQE 53
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 132 bits (331), Expect = 9e-31, Method: Composition-based stats.
Identities = 76/188 (40%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LPE DWRA+G + +K QGKC CWAFS V VE+++ I+ +L LS QQLVDC N
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
GC GG D A QYII NGG+ ++ YPYKA + C +P
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP--C---RAAKKVVRIDGCKGVPQCN 115
Query: 416 EEEMKKWVATRGPLSVGMNANG--LFYYSGGVI------DLNQR--LYGTSIPYWIVKNS 465
E +K VA++ P V ++A+ +Y GG+ LN + G YWIV+NS
Sbjct: 116 ENALKNAVASQ-PSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGKDYWIVRNS 174
Query: 466 WGSDWGEK 473
WG WGE+
Sbjct: 175 WGRHWGEQ 182
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L L+ ++LVDC N GC GG D A QYII NGG+ ++ YPYKA + C
Sbjct: 45 LISLSEQQLVDCSKKNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP--C---RAA 99
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLCNPKA 615
+P E +K VA++ P V ++A+ +Y GG+ C K
Sbjct: 100 KKVVRIDGCKGVPQCNENALKNAVASQ-PSVVAIDASSKQFQHYKGGIF---TGPCGTKL 155
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NH ++IVGYG++ YWIV+NSWG WGE+
Sbjct: 156 -NHGVVIVGYGKD---------YWIVRNSWGRHWGEQ 182
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LPE DWRA+G + +K QGKC CWAFS V VE+++ I+ NL LS Q
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQ 52
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 143/300 (47%), Gaps = 41/300 (13%)
Query: 194 ELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDS---GTAVFGVNKFFDL-SESD 249
EL + H K Y++ D + R + N++ + E S T +N D+ SE
Sbjct: 12 ELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEV 71
Query: 250 LQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVIS 309
+Q++TGL + + +L P + E RA P++ D+R +G ++
Sbjct: 72 VQKMTGLKVPLSHSRSNDTLYIP------EWEGRA------------PDSVDYRKKGYVT 113
Query: 310 KVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQY 369
VK QG+C CWAFS+VG +E + L LS Q LVDC N GC GG M +A QY
Sbjct: 114 PVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQY 173
Query: 370 IIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPL 429
+ N G+ S+ AYPY E C+ Y IP G E+ +K+ VA GP+
Sbjct: 174 VQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPV 230
Query: 430 SVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYWIVKNSWGSDWGEK 473
SV ++A+ +YS GV +LN + YG +WI+KNSWG +WG K
Sbjct: 231 SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNK 290
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ + LVDC N GC GG M +A QY+ N G+ S+ AYPY E C+
Sbjct: 143 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 199
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
Y IP G E+ +K+ VA GP+SV ++A+ +YS GV CN
Sbjct: 200 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 257
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NHA++ VGYG ++ +WI+KNSWG +WG K
Sbjct: 258 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 290
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 48 FMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDS-GTAVFEV--NKFFDLSDSDL-Q 103
+ + H K Y++ D + R + N++ + E S G +E+ N D++ ++ Q
Sbjct: 14 WKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQ 73
Query: 104 QLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKV 163
++TGL + + +L P + E RA P++ D+R +G ++ V
Sbjct: 74 KMTGLKVPLSHSRSNDTLYIP------EWEGRA------------PDSVDYRKKGYVTPV 115
Query: 164 KEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
K QG+C CWAFS+VG +E + L LS Q+
Sbjct: 116 KNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQN 151
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 146/294 (49%), Gaps = 44/294 (14%)
Query: 200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSE-DSGTAVF--GVNKFFDLSESDLQQLTGL 256
H K YSS + +RR F NV K ++ ++ + G + +N+F D+S+ + L +
Sbjct: 34 HKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEF--LAYV 91
Query: 257 NLDSTLEDIQP-SLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
N + P +L+ P+ S++ L + DWR+ V S+VK+QG
Sbjct: 92 NRGKAQKPKHPENLRMPYVSSKKP----------------LAASVDWRSNAV-SEVKDQG 134
Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGRMDDALQYIIDN 373
+C W+FS G VE A+Q LT LS Q L+DC S N GC+GG MD A YI D
Sbjct: 135 QCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY 194
Query: 374 GGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGM 433
G++S+ AYPY E++ Y +P G+E + V GP++V +
Sbjct: 195 -GIMSESAYPY---EAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAI 250
Query: 434 NA-NGLFYYSGGVI--------DLNQRL----YGT--SIPYWIVKNSWGSDWGE 472
+A + L +YSGG+ DLN + YG+ YWI+KNSWGS WGE
Sbjct: 251 DATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGE 304
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 14/158 (8%)
Query: 497 KLSRLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L+ L+ + L+DC S N GC+GG MD A YI D G ++S+ AYPY E++
Sbjct: 158 RLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYG-IMSESAYPY---EAQGDYCRF 213
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNP 613
Y +P G+E + V GP++V ++A + L +YSGG+ + CN
Sbjct: 214 DSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGL--FYDQTCNQ 271
Query: 614 KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
NH +++VGYG + +D YWI+KNSWGS WGE
Sbjct: 272 SDLNHGVLVVGYGSDNGQD-----YWILKNSWGSGWGE 304
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 50/254 (19%)
Query: 22 IKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEK-AEDYQ 80
+++ L ++FQ + + F H K YSS + +RR F NV K AE
Sbjct: 13 LEICSLPKSLFQEQ---------WSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNA 63
Query: 81 REDSGTAVFE--VNKFFDLSDSDLQQLTGLNLDSTLEDIQP-SLQAPFSSNQTDTEMRAF 137
+ + G + +N+F D+S + L +N + P +L+ P+ S++
Sbjct: 64 KFEKGEVTYSKAMNQFGDMSKEEF--LAYVNRGKAQKPKHPENLRMPYVSSKKP------ 115
Query: 138 QFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSV 197
L + DWR+ V S+VK+QG+C W+FS G VE A+Q LT LS
Sbjct: 116 ----------LAASVDWRSNAV-SEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSE 164
Query: 198 QH-----------------HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVN 240
Q+ D +S + D E+ E DY DS +V ++
Sbjct: 165 QNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSES-AYPYEAQGDYCRFDSSQSVTTLS 223
Query: 241 KFFDLSESDLQQLT 254
++DL D L
Sbjct: 224 GYYDLPSGDENSLA 237
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 110/207 (53%), Gaps = 23/207 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LP+ DWR+ G + +K+QG+C CWAFS + VE ++ I L LS Q+LVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
GC+GG M D Q+II+NGG+ ++ YPY A E + C Y +PY
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ--CNLDLQQEKYVSIDTYENVPY 118
Query: 414 GEEEEMKKWVATRGPLSVGMNANG--LFYYSGGV--------IDLNQRL--YGT--SIPY 459
E ++ VA + P+SV + A G +YS G+ +D + YGT I Y
Sbjct: 119 NNEWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDY 177
Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
WIVKNSWG+ WGE +++ VG G
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNVGGVG 204
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
+ L L+ ++LVDC + GC+GG M D Q+II+NGG+ ++ YPY A E +
Sbjct: 40 IATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ-- 97
Query: 551 CLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQ 608
C Y +PY E ++ VA + P+SV + A G +YS G+
Sbjct: 98 CNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIF---T 153
Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
C A +HA+ IVGYG E I YWIVKNSWG+ WGE+
Sbjct: 154 GPCG-TAVDHAVTIVGYGTE-----GGIDYWIVKNSWGTTWGEE 191
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LP+ DWR+ G + +K+QG+C CWAFS + VE ++ I +L LS Q
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQ 51
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 129 bits (324), Expect = 5e-30, Method: Composition-based stats.
Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LP DWR+ G + +K QG+C CWAFSA+ VE ++ I L LS Q+L+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
GCNGG + D Q+II+NGG+ +++ YPY A + E C Y +PY
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGE--CNVDLQNEKYVTIDTYENVPY 118
Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRL--YGTS--IPY 459
E ++ V T P+SV ++A G + YS G+ ID + YGT I Y
Sbjct: 119 NNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDY 177
Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
WIVKNSW + WGE ++ VG +G
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAG 204
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 24/169 (14%)
Query: 490 LTGVLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 547
+TGVL S L+ ++L+DC + GCNGG + D Q+II+NGG+ +++ YPY A +
Sbjct: 41 VTGVLIS----LSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDG 96
Query: 548 ERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVID 605
E C Y +PY E ++ V T P+SV ++A G + YS G+
Sbjct: 97 E--CNVDLQNEKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGI-- 151
Query: 606 LNQRLCNP--KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
P A +HA+ IVGYG E I YWIVKNSW + WGE+
Sbjct: 152 ----FTGPCGTAIDHAVTIVGYGTE-----GGIDYWIVKNSWDTTWGEE 191
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LP DWR+ G + +K QG+C CWAFSA+ VE ++ I L LS Q
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQ 51
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 110/204 (53%), Gaps = 23/204 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LP DWR++G ++ +K Q +C CWAFSAV VE+++ I+ L LS Q+LVDCD ++
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
GCNGG M++A QYII NGG+ + Q YPY A + + R+
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS----CKPYRLRVVSINGFQRVTRNN 116
Query: 416 EEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------LNQRL----YGTSIP--YWI 461
E ++ VA++ P+SV + A G +YS G+ N + YGT YWI
Sbjct: 117 ESALQSAVASQ-PVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWI 175
Query: 462 VKNSWGSDWGEK----VEDKVGSS 481
V+NSWG +WG + +E V SS
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASS 199
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
+L L+ ++LVDCD ++ GCNGG M++A QYII NGG+ + Q YPY A +
Sbjct: 44 QLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS----CKPY 99
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLCNPK 614
+ R+ E ++ VA++ P+SV + A G +YS G+ C
Sbjct: 100 RLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTVEAAGAPFQHYSSGIFT---GPCG-T 154
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
AQNH ++IVGYG + K+ YWIV+NSWG +WG +
Sbjct: 155 AQNHGVVIVGYGTQSGKN-----YWIVRNSWGQNWGNQ 187
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LP DWR++G ++ +K Q +C CWAFSAV VE+++ I+ L LS Q
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQ 51
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P A DWR +G ++ VK+QG+C CWAFS +G +E + GN L LS Q LV CD +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 357 GCNGGRMDDALQYIID-NGG-VVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GC GG MD+A +I++ NGG V ++ +YPY + E+ + +P
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGV--------IDLNQRLYG----TSIPYWIV 462
+E+ + ++A GPL++ ++A Y+GG+ +D L G ++ PYWI+
Sbjct: 121 DEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPYWII 180
Query: 463 KNSWGSDWGE 472
KNSW + WGE
Sbjct: 181 KNSWSNMWGE 190
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 12/161 (7%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIID-NGG-VVSDQAYPYKASESERG 550
V + L L+ + LV CD + GC GG MD+A +I++ NGG V ++ +YPY + E+
Sbjct: 40 VAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQP 99
Query: 551 CLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRL 610
+ +P +E+ + ++A GPL++ ++A Y+GG++
Sbjct: 100 QCQMNGHEIGAAITDHVDLPQ-DEDAIAAYLAENGPLAIAVDATSFMDYNGGIL----TS 154
Query: 611 CNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
C + +H +++VGY D ++ PYWI+KNSW + WGE
Sbjct: 155 CTSEQLDHGVLLVGY-----NDASNPPYWIIKNSWSNMWGE 190
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
P A DWR +G ++ VK+QG+C CWAFS +G +E + GN L LS Q
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQ 51
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LP+ DWR+ G + +K+QG+C WAFS + VE ++ I L LS Q+LVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
GC+GG M D Q+II+NGG+ ++ YPY A E + C Y +PY
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ--CNLDLQQEKYVSIDTYENVPY 118
Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRL--YGT--SIPY 459
E ++ VA + P+SV + A G + YS G+ +D + YGT I Y
Sbjct: 119 NNEWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDY 177
Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
WIVKNSWG+ WGE +++ VG G
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNVGGVG 204
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
+ L L+ ++LVDC + GC+GG M D Q+II+NGG+ ++ YPY A E +
Sbjct: 40 IATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ-- 97
Query: 551 CLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQ 608
C Y +PY E ++ VA + P+SV + A G + YS G+
Sbjct: 98 CNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIF---T 153
Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
C A +HA+ IVGYG E I YWIVKNSWG+ WGE+
Sbjct: 154 GPCG-TAVDHAVTIVGYGTE-----GGIDYWIVKNSWGTTWGEE 191
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LP+ DWR+ G + +K+QG+C WAFS + VE ++ I +L LS Q
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQ 51
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 107/220 (48%), Gaps = 34/220 (15%)
Query: 282 MRAFQFNSLRHGD--------DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMH 333
M FQ R G + P + DWR +G ++ VK QG+C CWAFSA G +E
Sbjct: 17 MNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQM 76
Query: 334 AIQGNSLTELSVQQLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 391
+ L LS Q LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 77 FRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES- 135
Query: 392 GCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSG----- 443
+ IP +E+ + K VAT GP+SV ++A LFY G
Sbjct: 136 --CKYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP 192
Query: 444 ---------GVIDLNQRLYGTSI---PYWIVKNSWGSDWG 471
GV+ + T YW+VKNSWG +WG
Sbjct: 193 DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 232
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 82 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 138
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 139 NPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 194
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 195 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 232
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 134 MRAFQFNSLRHGD--------DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMH 185
M FQ R G + P + DWR +G ++ VK QG+C CWAFSA G +E
Sbjct: 17 MNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQM 76
Query: 186 AIQGNNLTELSVQH 199
+ L LS Q+
Sbjct: 77 FRKTGRLISLSEQN 90
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q LVDC N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GC GG M +A QY+ N G+ S+ AYPY E C+ Y IP G E
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNE 117
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
+ +K+ VA GP+SV ++A+ +YS GV +LN + YG +W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 461 IVKNSWGSDWGEK 473
I+KNSWG +WG K
Sbjct: 178 IIKNSWGENWGNK 190
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ + LVDC N GC GG M +A QY+ N G+ S+ AYPY E C+
Sbjct: 43 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 99
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
Y IP G E+ +K+ VA GP+SV ++A+ +YS GV CN
Sbjct: 100 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 157
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NHA++ VGYG ++ +WI+KNSWG +WG K
Sbjct: 158 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 190
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q+
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQN 51
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q LVDC N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GC GG M +A QY+ N G+ S+ AYPY E C+ Y IP G E
Sbjct: 64 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNE 120
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
+ +K+ VA GP+SV ++A+ +YS GV +LN + YG +W
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 180
Query: 461 IVKNSWGSDWGEK 473
I+KNSWG +WG K
Sbjct: 181 IIKNSWGENWGNK 193
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ + LVDC N GC GG M +A QY+ N G+ S+ AYPY E C+
Sbjct: 46 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 102
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
Y IP G E+ +K+ VA GP+SV ++A+ +YS GV CN
Sbjct: 103 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 160
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NHA++ VGYG ++ +WI+KNSWG +WG K
Sbjct: 161 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 193
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q+
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQN 54
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q LVDC N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GC GG M +A QY+ N G+ S+ AYPY E C+ Y IP G E
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNE 118
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
+ +K+ VA GP+SV ++A+ +YS GV +LN + YG +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 178
Query: 461 IVKNSWGSDWGEK 473
I+KNSWG +WG K
Sbjct: 179 IIKNSWGENWGNK 191
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ + LVDC N GC GG M +A QY+ N G+ S+ AYPY E C+
Sbjct: 44 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
Y IP G E+ +K+ VA GP+SV ++A+ +YS GV CN
Sbjct: 101 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 158
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NHA++ VGYG ++ +WI+KNSWG +WG K
Sbjct: 159 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 191
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q+
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQN 52
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 102/191 (53%), Gaps = 19/191 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q LVDC N
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GC GG M +A QY+ N G+ S+ AYPY E C+ Y IP G E
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNE 118
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
+ +K+ VA GP+SV ++A+ +YS GV +LN + YG S +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHW 178
Query: 461 IVKNSWGSDWG 471
I+KNSWG +WG
Sbjct: 179 IIKNSWGENWG 189
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ + LVDC N GC GG M +A QY+ N G+ S+ AYPY E C+
Sbjct: 44 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
Y IP G E+ +K+ VA GP+SV ++A+ +YS GV CN
Sbjct: 101 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 158
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
NHA++ VGYGE + +WI+KNSWG +WG
Sbjct: 159 NLNHAVLAVGYGESKGNK-----HWIIKNSWGENWG 189
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q+
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQN 52
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 102/199 (51%), Gaps = 26/199 (13%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
+ P + DWR +G ++ VK QG+C CWAFSA G +E + L LS Q LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 355 NG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
G GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGT 455
+E+ + K VAT GP+SV ++A LFY G GV+ + T
Sbjct: 118 -KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 456 SI---PYWIVKNSWGSDWG 471
YW+VKNSWG +WG
Sbjct: 177 ESDNNKYWLVKNSWGEEWG 195
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 45 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 101
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 102 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 157
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 158 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 195
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
+ P + DWR +G ++ VK QG+C CWAFSA G +E + L LS Q+
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQN 53
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q LVDC N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GC GG M +A QY+ N G+ S+ AYPY + C+ Y IP G E
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES--CM-YNPTGKAAKCRGYREIPEGNE 118
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
+ +K+ VA GP+SV ++A+ +YS GV +LN + YG +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHW 178
Query: 461 IVKNSWGSDWGEK 473
I+KNSWG WG K
Sbjct: 179 IIKNSWGESWGNK 191
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 84/159 (52%), Gaps = 14/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ + LVDC N GC GG M +A QY+ N G+ S+ AYPY + C+
Sbjct: 44 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES--CM-YNP 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGV-IDLNQRLCNP 613
Y IP G E+ +K+ VA GP+SV ++A+ +YS GV D N C+
Sbjct: 101 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDEN---CSS 157
Query: 614 KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NHA++ VGYG ++ +WI+KNSWG WG K
Sbjct: 158 DNLNHAVLAVGYGIQKGNK-----HWIIKNSWGESWGNK 191
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q+
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQN 52
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK QG+C CWAFSA G +E + L LS Q LVDC G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDAGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
+E+ + K VAT GP+SV ++A LFY G GV+ + T
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
YW+VKNSWG +WG
Sbjct: 178 DNNKYWLVKNSWGEEWG 194
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 101 NPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 194
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK QG+C CWAFSA G +E + L LS Q+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQN 52
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK QG+C CWAFSA G +E + L LS Q LVDC G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
+E+ + K VAT GP+SV ++A LFY G GV+ + T
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
YW+VKNSWG +WG
Sbjct: 178 DNNKYWLVKNSWGEEWG 194
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 194
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK QG+C CWAFSA G +E + L LS Q+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQN 52
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
+LP DWR+ G ++ VK+Q C CWAFS G +E H + L LS Q+L+DC +
Sbjct: 6 ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA 65
Query: 355 NG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
G C+GG M+DA QY++D+GG+ S+ AYPY A + E + +P
Sbjct: 66 EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEE---CRAQSCEKVVKILGFKDVP 122
Query: 413 YGEEEEMKKWVATRGPLSVGMNANGL---FYYSGGV-----IDLNQRL----YGT----S 456
E MK +A + P+S+ + A+ + FY+ G DL+ + YGT
Sbjct: 123 RRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESK 181
Query: 457 IPYWIVKNSWGSDWG 471
+WI+KNSWG+ WG
Sbjct: 182 KDFWIMKNSWGTGWG 196
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 19/160 (11%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
KL L+ ++L+DC + G C+GG M+DA QY++D+GG+ S+ AYPY A + E
Sbjct: 50 KLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEE---CRA 106
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF--YYSGGVIDLNQRLCN 612
+ +P E MK +A + P+S+ + A+ + +Y GV D + C
Sbjct: 107 QSCEKVVKILGFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDAS---CG 162
Query: 613 PKAQNHALIIVGYG--EEEKKDGTSIPYWIVKNSWGSDWG 650
+H +++VGYG +E KKD +WI+KNSWG+ WG
Sbjct: 163 TDL-DHGVLLVGYGTDKESKKD-----FWIMKNSWGTGWG 196
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+LP DWR+ G ++ VK+Q C CWAFS G +E H + L LS Q
Sbjct: 6 ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQ 57
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 151/318 (47%), Gaps = 37/318 (11%)
Query: 200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAV---FGVNKFFDLSESDLQQLT-G 255
+ + Y + ++ R + F +E E++ + V GVN F D++ +++ T G
Sbjct: 29 YARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHG 88
Query: 256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
L + + L ++ + D + A S+R+ P +FDWR +G++S VK QG
Sbjct: 89 LIMPADLHKNGIPIKT-----REDLGLNA----SVRY----PASFDWRDQGMVSPVKNQG 135
Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSV--QQLVDCDMSNGGCNGGRMDDALQYIIDN 373
C WAFS+ G +E+ I + + SV QQLVDC + GC+GG M+DA Y+ N
Sbjct: 136 SCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQN 195
Query: 374 GGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGM 433
GG+ S+ AYPY+ ++ G Y + +E + VAT+GP++V
Sbjct: 196 GGIDSEGAYPYEMAD---GNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAF 252
Query: 434 NANGLF-YYSGGV-----IDLNQRLYGTSI---------PYWIVKNSWGSDWGEKVEDKV 478
+A+ F YSGGV + N+ + I YW+VKNSWG WG K+
Sbjct: 253 DADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKI 312
Query: 479 GSSGNRTRDLELTGVLPS 496
+ N + +P+
Sbjct: 313 ARNANNHCGIAGVASVPT 330
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 499 SRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXX 558
S ++ ++LVDC + GC+GG M+DA Y+ NGG+ S+ AYPY+ ++ G
Sbjct: 163 SSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMAD---GNCHYDPNQ 219
Query: 559 XXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKAQN 617
Y + +E + VAT+GP++V +A+ F YSGGV C
Sbjct: 220 VAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGV--YYNPTCETNKFT 277
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
HA++IVGYG E +D YW+VKNSWG WG
Sbjct: 278 HAVLIVGYGNENGQD-----YWLVKNSWGDGWG 305
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Query: 44 RFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQ---REDSGTAVFEVNKFFDLSDS 100
++ NF + + Y + ++ R + F +E E++ R+ + VN F D++
Sbjct: 21 KWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPE 80
Query: 101 DLQQLT-GLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGV 159
+++ T GL + + L ++ + D + A S+R+ P +FDWR +G+
Sbjct: 81 EMKAYTHGLIMPADLHKNGIPIKT-----REDLGLNA----SVRY----PASFDWRDQGM 127
Query: 160 ISKVKEQGKCACCWAFSAVGVVEAMHAI 187
+S VK QG C WAFS+ G +E+ I
Sbjct: 128 VSPVKNQGSCGSSWAFSSTGAIESQMKI 155
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 133/297 (44%), Gaps = 50/297 (16%)
Query: 200 HDKVYSSVEDLLRRH--ENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGL 256
H+++Y E+ RR E + +E E + +N F D++ + +Q + GL
Sbjct: 15 HNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGL 74
Query: 257 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 316
N+ + + FQ + P + DWR +G ++ VK QG+
Sbjct: 75 Q------------------NRKPRKGKVFQEPLFY---EAPRSVDWREKGYVTPVKNQGQ 113
Query: 317 CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG--GCNGGRMDDALQYIIDNG 374
C WAFSA G +E + L LS Q LVDC G GCNGG MD A QY+ DNG
Sbjct: 114 CGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNG 173
Query: 375 GVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMN 434
G+ S+++YPY+A+E + IP E+ MK VAT GP+SV ++
Sbjct: 174 GLDSEESYPYEATEE---SCKYNPKYSVANDAGFVDIPKQEKALMKA-VATVGPISVAID 229
Query: 435 ANG---LFYYSG--------------GVIDLNQRLYGTSI---PYWIVKNSWGSDWG 471
A LFY G GV+ + T YW+VKNSWG +WG
Sbjct: 230 AGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWG 286
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 33/237 (13%)
Query: 423 VATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSG 482
+ R P + LFY + +D ++ Y T + K + + GSS
Sbjct: 74 LQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPV---------------KNQGQCGSSW 118
Query: 483 NRTRDLELTGVLPSKLSRLAT---EKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSD 537
+ L G + K RL + + LVDC G GCNGG MD A QY+ DNGG+ S+
Sbjct: 119 AFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSE 178
Query: 538 QAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG-- 595
++YPY+A+E + IP E+ MK VAT GP+SV ++A
Sbjct: 179 ESYPYEATEE---SCKYNPKYSVANDAGFVDIPKQEKALMKA-VATVGPISVAIDAGHES 234
Query: 596 -LFYYSGGVIDLNQRLCNPKAQNHALIIVGYG-EEEKKDGTSIPYWIVKNSWGSDWG 650
LFY G + + C+ + +H +++VGYG E + DG YW+VKNSWG +WG
Sbjct: 235 FLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDGNK--YWLVKNSWGEEWG 286
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 52 HDKVYSSVEDLLRRH--ENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQ-LTGL 108
H+++Y E+ RR E + +E RE + +N F D++ + +Q + GL
Sbjct: 15 HNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGL 74
Query: 109 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 168
N+ + + FQ + P + DWR +G ++ VK QG+
Sbjct: 75 Q------------------NRKPRKGKVFQEPLFY---EAPRSVDWREKGYVTPVKNQGQ 113
Query: 169 CACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
C WAFSA G +E + L LS Q+
Sbjct: 114 CGSSWAFSATGALEGQMFRKTGRLISLSEQN 144
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 101/192 (52%), Gaps = 19/192 (9%)
Query: 298 EAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGG 357
++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q LVDC N G
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 60
Query: 358 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 417
C GG M +A QY+ N G+ S+ AYPY E C+ Y IP G E+
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNEK 117
Query: 418 EMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYWI 461
+K+ VA GP+SV ++A+ +YS GV +LN + YG +WI
Sbjct: 118 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 177
Query: 462 VKNSWGSDWGEK 473
+KNSWG +WG K
Sbjct: 178 IKNSWGENWGNK 189
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ + LVDC N GC GG M +A QY+ N G+ S+ AYPY E C+
Sbjct: 42 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 98
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
Y IP G E+ +K+ VA GP+SV ++A+ +YS GV CN
Sbjct: 99 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
NHA++ VGYG ++ +WI+KNSWG +WG K
Sbjct: 157 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 189
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 150 EAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
++ D+R +G ++ VK QG+C CWAFS+VG +E + L LS Q+
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQN 50
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 130/304 (42%), Gaps = 64/304 (21%)
Query: 200 HDKVYSSVEDLLRRH--ENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLN 257
H+++Y E+ RR E + +E E + +N F D++ + +Q+
Sbjct: 19 HNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQV---- 74
Query: 258 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGD--------DLPEAFDWRAEGVIS 309
M FQ R G + P + DWR +G ++
Sbjct: 75 ------------------------MNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVT 110
Query: 310 KVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD--MSNGGCNGGRMDDAL 367
VK QG+C WAFSA G +E + L LS Q LVDC N GCNGG MD A
Sbjct: 111 PVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAF 170
Query: 368 QYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRG 427
QY+ DNGG+ S+++YPY+A+E + IP E+ MK VAT G
Sbjct: 171 QYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVANDAGFVDIPKQEKALMKA-VATVG 226
Query: 428 PLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI---PYWIVKNSWG 467
P+SV ++A LFY G GV+ + T YW+VKNSWG
Sbjct: 227 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 286
Query: 468 SDWG 471
+WG
Sbjct: 287 EEWG 290
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 31/221 (14%)
Query: 438 LFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSK 497
LFY + +D ++ Y T + K + + GS + L G + K
Sbjct: 93 LFYEAPRSVDWREKGYVTPV---------------KNQGQCGSXWAFSATGALEGQMFRK 137
Query: 498 LSRLAT---EKLVDCD--MSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
RL + + LVDC N GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 138 TGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SC 194
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQR 609
+ IP E+ MK VAT GP+SV ++A LFY G + +
Sbjct: 195 KYNPKYSVANDAGFVDIPKQEKALMKA-VATVGPISVAIDAGHESFLFYKEGIYFEPD-- 251
Query: 610 LCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
C+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 252 -CSSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 290
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 38/158 (24%)
Query: 52 HDKVYSSVEDLLRRH--ENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLN 109
H+++Y E+ RR E + +E RE + +N F D++ + +Q+
Sbjct: 19 HNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQV---- 74
Query: 110 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGD--------DLPEAFDWRAEGVIS 161
M FQ R G + P + DWR +G ++
Sbjct: 75 ------------------------MNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVT 110
Query: 162 KVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
VK QG+C WAFSA G +E + L LS Q+
Sbjct: 111 PVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQN 148
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 107/223 (47%), Gaps = 25/223 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LP++ DWR +G ++ VK Q +C CWAFSA G +E + L LS Q LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
G GCNGG M A QY+ +NGG+ S+++YPY A + ++ +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 414 GEEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGT- 455
G+E+ + K VAT GP+SV M+A FY SG GV+ + G
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGAN 177
Query: 456 --SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPS 496
+ YW+VKNSWG +WG K+ N + P+
Sbjct: 178 SDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPN 220
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 12/159 (7%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
KL L+ + LVDC G GCNGG M A QY+ +NGG+ S+++YPY A +
Sbjct: 44 KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
++ + G+E+ + K VAT GP+SV M+A FY SG + + C
Sbjct: 101 RPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD---C 157
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ K +H +++VGYG E S YW+VKNSWG +WG
Sbjct: 158 SSKNLDHGVLVVGYGFEGANSDNS-KYWLVKNSWGPEWG 195
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G ++ VK Q +C CWAFSA G +E + L LS Q+
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQN 52
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 120 bits (301), Expect = 3e-27, Method: Composition-based stats.
Identities = 74/191 (38%), Positives = 102/191 (53%), Gaps = 18/191 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P++ DWRA+G ++ VK QG C WAFS + VE ++ I +L ELS Q+LVDCD +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GC GG +LQY+ +N GV + + YPY+A + + C Y R+P E
Sbjct: 62 GCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYK--CRATDKPGPKVKITGYKRVPSNXE 118
Query: 417 EEMKKWVATRGPLSVGMNANGLFY--YSGGVID------LNQRL----YGTS--IPYWIV 462
+A + PLSV + A G + Y GV D L+ + YGTS Y I+
Sbjct: 119 TSFLGALANQ-PLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIII 177
Query: 463 KNSWGSDWGEK 473
KNSWG +WGEK
Sbjct: 178 KNSWGPNWGEK 188
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
++ L L+ ++LVDCD + GC GG +LQY+ +N GV + + YPY+A + + C
Sbjct: 40 IVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYK--CR 96
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRL 610
Y R+P E +A + PLSV + A G + Y GV D
Sbjct: 97 ATDKPGPKVKITGYKRVPSNXETSFLGALANQ-PLSVLVEAGGKPFQLYKSGVFD---GP 152
Query: 611 CNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
C K +HA+ VGYG + K+ Y I+KNSWG +WGEK
Sbjct: 153 CGTKL-DHAVTAVGYGTSDGKN-----YIIIKNSWGPNWGEK 188
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
P++ DWRA+G ++ VK QG C WAFS + VE ++ I NL ELS Q
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQ 51
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
+ P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 355 NG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
G GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGT 455
+E+ + K VAT GP+SV ++A LFY G GV+ + T
Sbjct: 118 -KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 456 SI---PYWIVKNSWGSDWG 471
YW+VKNSWG +WG
Sbjct: 177 ESDNNKYWLVKNSWGEEWG 195
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 45 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 101
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 102 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 157
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 158 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 195
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
+ P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q+
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQN 53
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 100/197 (50%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q LVDC G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
+E+ + K VAT GP+SV ++A LFY G GV+ + T
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
YW+VKNSWG +WG
Sbjct: 178 DNNKYWLVKNSWGEEWG 194
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 194
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQN 52
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 98/191 (51%), Gaps = 19/191 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P++ D+R +G ++ VK QG+C CWAFS+VG +E +L L+ Q LVDC N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GC GG M +A QY+ N G+ S+ AYPY + C+ Y IP G E
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES--CM-YNPTGKAAKCRGYREIPEGNE 118
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
+K+ VA GP+SV ++A+ +YS GV LN + YG +W
Sbjct: 119 AALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHW 178
Query: 461 IVKNSWGSDWG 471
I+KNSWG WG
Sbjct: 179 IIKNSWGESWG 189
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L LA + LVDC N GC GG M +A QY+ N G+ S+ AYPY + C+
Sbjct: 45 LLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES--CM-YNPT 101
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGV-IDLNQRLCNPK 614
Y IP G E +K+ VA GP+SV ++A+ +YS GV D N C+
Sbjct: 102 GKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDEN---CSSD 158
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
A NHA++ VGYG + +WI+KNSWG WG
Sbjct: 159 ALNHAVLAVGYGIQAGNK-----HWIIKNSWGESWG 189
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P++ D+R +G ++ VK QG+C CWAFS+VG +E L L+ Q+
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQN 52
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 38/290 (13%)
Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDL-QQLTGLN 257
+H+K Y +V++ L R E F N+ ++ +++ + G+N+F DLS + ++ G
Sbjct: 28 NHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNN-SYWLGLNEFADLSNDEFNEKYVGSL 86
Query: 258 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKC 317
+D+T+E S F + +LPE DWR +G ++ V+ QG C
Sbjct: 87 IDATIEQ---SYDEEFINEDIV---------------NLPENVDWRKKGAVTPVRHQGSC 128
Query: 318 ACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVV 377
CWAFSAV VE ++ I+ L ELS Q+LVDC+ + GC GG AL+Y+ N G+
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIH 187
Query: 378 SDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG 437
YPYKA + C R+ E + +A + P+SV + + G
Sbjct: 188 LRSKYPYKAKQGT--CRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKG 244
Query: 438 LFY--YSGGVID--LNQRLYGTSIPYW----------IVKNSWGSDWGEK 473
+ Y GG+ + ++ G ++KNSWG+ WGEK
Sbjct: 245 RPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEK 294
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 20/158 (12%)
Query: 42 VTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSD 101
+ F ++M +H+K Y +V++ L R E F N+ ++ ++++ + +N+F DLS+ +
Sbjct: 19 IQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNN-SYWLGLNEFADLSNDE 77
Query: 102 L-QQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVI 160
++ G +D+T+E S F + +LPE DWR +G +
Sbjct: 78 FNEKYVGSLIDATIEQ---SYDEEFINEDIV---------------NLPENVDWRKKGAV 119
Query: 161 SKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+ V+ QG C CWAFSAV VE ++ I+ L ELS Q
Sbjct: 120 TPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQ 157
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 15/165 (9%)
Query: 490 LTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 549
+ + KL L+ ++LVDC+ + GC GG AL+Y+ N G+ YPYKA +
Sbjct: 143 INKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT- 200
Query: 550 GCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLN 607
C R+ E + +A + P+SV + + G + Y GG+
Sbjct: 201 -CRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIF--- 255
Query: 608 QRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
+ C K + Y ++KNSWG+ WGEK
Sbjct: 256 EGPCGTKVDGAVTAV------GYGKSGGKGYILIKNSWGTAWGEK 294
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 100/197 (50%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q LVDC G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
+E+ + K VAT GP+SV ++A LFY G GV+ + T
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
YW+VKNSWG +WG
Sbjct: 178 DNNKYWLVKNSWGEEWG 194
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 194
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQN 52
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 100/197 (50%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q LVDC G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDAGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
+E+ + K VAT GP+SV ++A LFY G GV+ + T
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
YW+VKNSWG +WG
Sbjct: 178 DDNKYWLVKNSWGEEWG 194
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 101 NPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ + +H +++VGYG E + + YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDDN-KYWLVKNSWGEEWG 194
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQN 52
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LP DWR+ G + +K QG+C WAFSA+ VE ++ I SL LS Q+L+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
GC+GG + D Q+II++GG+ +++ YPY A + + C Y +PY
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGD--CDVALQDQKYVTIDTYENVPY 118
Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVID------LNQRL----YGT--SIPY 459
E ++ V T P+SV ++A G + Y+ G+ ++ + YGT + Y
Sbjct: 119 NNEWALQTAV-TYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDY 177
Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
WIVKNSW + WGE ++ VG +G
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAG 204
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
+ L L+ ++L+DC + GC+GG + D Q+II++GG+ +++ YPY A + +
Sbjct: 40 ITSGSLISLSEQELIDCGRTQNTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGD-- 97
Query: 551 CLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQ 608
C Y +PY E ++ V T P+SV ++A G + Y+ G+
Sbjct: 98 CDVALQDQKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYASGIF---T 153
Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
C A +HA++IVGYG E D YWIVKNSW + WGE+
Sbjct: 154 GPCG-TAVDHAIVIVGYGTEGGVD-----YWIVKNSWDTTWGEE 191
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP DWR+ G + +K QG+C WAFSA+ VE ++ I +L LS Q
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQE 52
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 100/201 (49%), Gaps = 37/201 (18%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK QG+C +AFSA G +E + L LS Q LVDC G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDVGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG---------------------GVIDLNQ 450
+E+ + K VAT GP+SV ++A LFY G G I NQ
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQ 177
Query: 451 RLYGTSIPYWIVKNSWGSDWG 471
+ YW+VKNSWG +WG
Sbjct: 178 K-------YWLVKNSWGEEWG 191
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G +
Sbjct: 101 NPKYSVANDVGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSS- 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ NHA+++VGYG YW+VKNSWG +WG
Sbjct: 159 --SSLNHAMLVVGYGFISNNQ----KYWLVKNSWGEEWG 191
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK QG+C +AFSA G +E + L LS Q+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQN 52
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 117 bits (292), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 14/200 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
PE+ DWR +G ++ VK Q C CWAFS V +E ++ I L LS Q+L+DC+ +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GC+GG +LQY++DN GV +++ YPY+ + C Y +P +E
Sbjct: 62 GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGR--CRAKDKKGPKVYITGYKYVPANDE 118
Query: 417 EEMKKWVATRGPLSVGMNA--NGLFYYSGGV--------IDLNQRLYGTSIPYWIVKNSW 466
+ + +A + P+SV ++ G +Y GG+ D G Y ++KNSW
Sbjct: 119 ISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKTYLLLKNSW 177
Query: 467 GSDWGEKVEDKVGSSGNRTR 486
G +WGEK ++ + R++
Sbjct: 178 GPNWGEKGYIRIKRASGRSK 197
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 23/164 (14%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
++ +L L+ ++L+DC+ + GC+GG +LQY++DN GV +++ YPY+ + C
Sbjct: 40 IITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGR--CR 96
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNA--NGLFYYSGGVIDLNQRL 610
Y +P +E + + +A + P+SV ++ G +Y GG+ +
Sbjct: 97 AKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYE----- 150
Query: 611 CNPKAQN--HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
P N HA+ VGYG+ Y ++KNSWG +WGEK
Sbjct: 151 -GPCGTNTDHAVTAVGYGKT---------YLLLKNSWGPNWGEK 184
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
PE+ DWR +G ++ VK Q C CWAFS V +E ++ I L LS Q
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQ 51
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 106/223 (47%), Gaps = 25/223 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LP++ DWR +G ++ VK Q +C WAFSA G +E + L LS Q LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
G GCNGG M A QY+ +NGG+ S+++YPY A + ++ +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 414 GEEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGT- 455
G+E+ + K VAT GP+SV M+A FY SG GV+ + G
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGAN 177
Query: 456 --SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPS 496
+ YW+VKNSWG +WG K+ N + P+
Sbjct: 178 SDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPN 220
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 12/159 (7%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
KL L+ + LVDC G GCNGG M A QY+ +NGG+ S+++YPY A +
Sbjct: 44 KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
++ + G+E+ + K VAT GP+SV M+A FY SG + + C
Sbjct: 101 RPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD---C 157
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ K +H +++VGYG E S YW+VKNSWG +WG
Sbjct: 158 SSKNLDHGVLVVGYGFEGANSDNS-KYWLVKNSWGPEWG 195
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
LP++ DWR +G ++ VK Q +C WAFSA G +E + L LS Q+
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQN 52
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
D PE++DW +GVI+KVK QG+C WAFSA G +EA HAI +L LS Q+L+DC
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI--- 411
+ GC G + ++++ +GG+ S+ YPYKA + + C +I
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGK--CKANEIQDKVTIDNYGVQILSN 118
Query: 412 ---PYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID---------LNQRL----YGT 455
E ++ +V + P+SV ++A +YSGG+ D +N + YG+
Sbjct: 119 ESTESEAESSLQSFVLEQ-PISVSIDAKDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS 177
Query: 456 --SIPYWIVKNSWGSDWG 471
+ YWI KNSWG DWG
Sbjct: 178 EDGVDYWIAKNSWGEDWG 195
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
+ L L+ ++L+DC + GC G + ++++ +GG+ S+ YPYKA + + C
Sbjct: 41 IATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGK--CK 98
Query: 553 XXXXXXXXXXXXXYSRI------PYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDL 606
+I E ++ +V + P+SV ++A +YSGG+ D
Sbjct: 99 ANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ-PISVSIDAKDFHFYSGGIYD- 156
Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+P NH ++IVGYG E+ D YWI KNSWG DWG
Sbjct: 157 GGNCSSPYGINHFVLIVGYGSEDGVD-----YWIAKNSWGEDWG 195
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 36/52 (69%)
Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
D PE++DW +GVI+KVK QG+C WAFSA G +EA HAI NL LS Q
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQ 52
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 35/293 (11%)
Query: 192 LTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQ 251
L E + H+K+Y ++++ + R E F N+ K D ++ + + G+N F D+S + +
Sbjct: 65 LFESWMLKHNKIYKNIDEKIYRFEIFKDNL-KYIDETNKKNNSYWLGLNVFADMSNDEFK 123
Query: 252 QLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGD-DLPEAFDWRAEGVISK 310
+ + N T TE+ + L GD ++PE DWR +G ++
Sbjct: 124 E---------------KYTGSIAGNYTTTELSYEEV--LNDGDVNIPEYVDWRQKGAVTP 166
Query: 311 VKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYI 370
VK QG C WAFSAV +E++ I+ +L E S Q+L+DCD + GCNGG ALQ +
Sbjct: 167 VKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQ-L 225
Query: 371 IDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYGEEEEMKKWVATRGPL 429
+ G+ YPY+ +R C ++ PY E + + P+
Sbjct: 226 VAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYNEGALL--YSIANQPV 281
Query: 430 SVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKNSWGSDWGE 472
SV + A G + Y GG+ +D G Y +++NSWG+ WGE
Sbjct: 282 SVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIRNSWGTGWGE 334
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 19/158 (12%)
Query: 42 VTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSD 101
+ F ++M H+K+Y ++++ + R E F N++ ++ ++++ + +N F D+S+ +
Sbjct: 63 IQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNN-SYWLGLNVFADMSNDE 121
Query: 102 LQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGD-DLPEAFDWRAEGVI 160
++ + N T TE+ + L GD ++PE DWR +G +
Sbjct: 122 FKE---------------KYTGSIAGNYTTTELSYEEV--LNDGDVNIPEYVDWRQKGAV 164
Query: 161 SKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+ VK QG C WAFSAV +E++ I+ NL E S Q
Sbjct: 165 TPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQ 202
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L+ + ++L+DCD + GCNGG ALQ ++ G+ YPY+ +R C
Sbjct: 196 LNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 252
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
++ PY E + + P+SV + A G + Y GG+ C K
Sbjct: 253 PYAAKTDGVRQVQPYNEGALL--YSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNK 307
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+HA+ VGYG Y +++NSWG+ WGE
Sbjct: 308 V-DHAVAAVGYGPN---------YILIRNSWGTGWGE 334
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 101/197 (51%), Gaps = 28/197 (14%)
Query: 299 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGC 358
A+DWR G ++ VK+Q C CWAFS+VG VE+ +AI+ +L S Q+LVDC + N GC
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 359 NGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEE 418
GG + +A +ID GG+ S YPY ++ E L Y IP +++
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKS--YVSIP---DDK 137
Query: 419 MKKWVATRGPLSVGMNANGLF-YYSGGVID------LNQRL----YGTS----------- 456
K+ + GP+S+ + A+ F +Y GG D N + YG
Sbjct: 138 FKEALRYLGPISISIAASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRME 197
Query: 457 -IPYWIVKNSWGSDWGE 472
Y+I+KNSWGSDWGE
Sbjct: 198 KFYYYIIKNSWGSDWGE 214
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 15/160 (9%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L + ++LVDC + N GC GG + +A +ID GG+ S YPY ++ E L
Sbjct: 64 LFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNL--KRC 121
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKAQ 616
Y IP +++ K+ + GP+S+ + A+ F +Y GG D C A
Sbjct: 122 NERYTIKSYVSIP---DDKFKEALRYLGPISISIAASDDFAFYRGGFYDGE---CGA-AP 174
Query: 617 NHALIIVGYG-----EEEKKDGTSIPYWIVKNSWGSDWGE 651
NHA+I+VGYG E+ Y+I+KNSWGSDWGE
Sbjct: 175 NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGE 214
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 151 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
A+DWR G ++ VK+Q C CWAFS+VG VE+ +AI+ L S Q
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQ 70
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 28/198 (14%)
Query: 299 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGC 358
A+DWR ++ VK+Q C CWAFS++G VE+ +AI+ N L LS Q+LVDC N GC
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 359 NGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEE 418
NGG +++A + +I+ GG+ D YPY S++ C Y +P + +
Sbjct: 81 NGGLINNAFEDMIELGGICPDGDYPY-VSDAPNLC-NIDRCTEKYGIKNYLSVP---DNK 135
Query: 419 MKKWVATRGPLSVGMNANGLF-YYSGGVID------LNQRLY----------------GT 455
+K+ + GP+S+ + + F +Y G+ D LN + G
Sbjct: 136 LKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 195
Query: 456 SIPYWIVKNSWGSDWGEK 473
Y+I+KNSWG WGE+
Sbjct: 196 KHYYYIIKNSWGQQWGER 213
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 15/166 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
+ +KL L+ ++LVDC N GCNGG +++A + +I+ GG+ D YPY S++ C
Sbjct: 57 IRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPY-VSDAPNLC- 114
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLC 611
Y +P + ++K+ + GP+S+ + + F +Y G+ D C
Sbjct: 115 NIDRCTEKYGIKNYLSVP---DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE---C 168
Query: 612 NPKAQNHALIIVGYGEEE-----KKDGTSIPYWIVKNSWGSDWGEK 652
+ NHA+++VG+G +E K G Y+I+KNSWG WGE+
Sbjct: 169 GDQL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 213
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 151 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
A+DWR ++ VK+Q C CWAFS++G VE+ +AI+ N L LS Q
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQ 68
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK QG+C CWAFSA G +E + L LS Q LVDC G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG 443
+E+ + K VAT GP+SV ++A LFY G
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEG 149
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEE 628
+ + +H +++VGYG E
Sbjct: 157 SSEDMDHGVLVVGYGFE 173
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK QG+C CWAFSA G +E + L LS Q+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQN 52
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 135/295 (45%), Gaps = 45/295 (15%)
Query: 200 HDKVYSSVEDLLRRH--ENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLS--ESDLQQLTG 255
++K Y+ +D RR+ E V ++++ T G+N+F D++ E + LT
Sbjct: 12 YNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTE 71
Query: 256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
++ S + S P+ +N RA +P+ DWR G +++VK+QG
Sbjct: 72 MSRASDI----LSHGVPYEANN-----RA-----------VPDKIDWRESGYVTEVKDQG 111
Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM--SNGGCNGGRMDDALQYIIDN 373
C WAFS G +E + + S QQLVDC N GC GG M++A QY +
Sbjct: 112 NCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQ 170
Query: 374 GGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGM 433
G+ ++ +YPY A E + C Y+ + G E E+K V GP +V +
Sbjct: 171 FGLETESSYPYTAVEGQ--CRYNKQLGVAKVTGFYT-VHSGSEVELKNLVGAEGPAAVAV 227
Query: 434 NANGLF-YYSGGV--------IDLNQRL----YGTS--IPYWIVKNSWGSDWGEK 473
+ F Y G+ + +N + YGT YWIVKNSWG WGE+
Sbjct: 228 DVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGER 282
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 14/155 (9%)
Query: 501 LATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXX 558
+ ++LVDC N GC GG M++A QY+ G+ ++ +YPY A E + C
Sbjct: 139 FSEQQLVDCSRPWGNNGCGGGLMENAYQYL-KQFGLETESSYPYTAVEGQ--CRYNKQLG 195
Query: 559 XXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDLNQRLCNPKAQN 617
Y+ + G E E+K V GP +V ++ F Y G+ + C+P N
Sbjct: 196 VAKVTGFYT-VHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQ--SQTCSPLRVN 252
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
HA++ VGYG + D YWIVKNSWG WGE+
Sbjct: 253 HAVLAVGYGTQGGTD-----YWIVKNSWGLSWGER 282
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 48 FMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQ-REDSG--TAVFEVNKFFDLSDSDLQQ 104
+ R ++K Y+ +D RR+ + NV+ +++ R D G T +N+F D++ + +
Sbjct: 8 WKRMYNKEYNGADDQHRRNI-WEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKA 66
Query: 105 LTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVK 164
L S DI S P+ +N RA +P+ DWR G +++VK
Sbjct: 67 KY-LTEMSRASDIL-SHGVPYEANN-----RA-----------VPDKIDWRESGYVTEVK 108
Query: 165 EQGKCACCWAFSAVGVVEAMH 185
+QG C WAFS G +E +
Sbjct: 109 DQGNCGSGWAFSTTGTMEGQY 129
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK+QG C CWAF A G +E + AI L +S QQ+VDCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
GG DDA +++I NGG+ SD YPY + Y+ +P
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDGT----CDLNKPIAARIDGYTNVPNSSS 117
Query: 417 EEMKKWVATRGPLSVGM----------NANGLFYYSG----------GVIDLNQRLYGTS 456
+ + P+SV + G+F S V+ + GT+
Sbjct: 118 ALLD--AVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTN 175
Query: 457 IPYWIVKNSWGSDWG 471
YWIVKNSWG++WG
Sbjct: 176 ADYWIVKNSWGTEWG 190
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 490 LTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 549
+ + +L ++ +++VDCD GG DDA +++I NGG+ SD YPY +
Sbjct: 37 IDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVDGT- 95
Query: 550 GCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSG-GVIDL 606
Y+ +P + + P+SV + + + Y+G G+
Sbjct: 96 ---CDLNKPIAARIDGYTNVPNSSSALLD--AVAKQPVSVNIYTSSTSFQLYTGPGIFAG 150
Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ +P +H ++IVGYG +GT+ YWIVKNSWG++WG
Sbjct: 151 SSCSDDPATVDHTVLIVGYGS----NGTNADYWIVKNSWGTEWG 190
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK+QG C CWAF A G +E + AI L +S Q
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQ 52
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 107 bits (268), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 24/195 (12%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LPE DWR +G ++ V+ QG C CWAFSAV VE ++ I+ L ELS Q+LVDC+ +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
GC GG AL+Y+ N G+ YPYKA + C R+
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQVGGPIVKTSGVGRVQPNN 117
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLYGTSIPYWI------------ 461
E + +A + P+SV + + G + Y GG+ + GT + + +
Sbjct: 118 EGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIF---EGPCGTKVEHAVTAVGYGKSGGKG 173
Query: 462 ---VKNSWGSDWGEK 473
+KNSWG+ WGEK
Sbjct: 174 YILIKNSWGTAWGEK 188
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LPE DWR +G ++ V+ QG C CWAFSAV VE ++ I+ L ELS Q
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQ 51
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ ++LVDC+ + GC GG AL+Y+ N G+ YPYKA + C
Sbjct: 44 KLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQV 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
R+ E + +A + P+SV + + G + Y GG+ + C K
Sbjct: 101 GGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIF---EGPCGTK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
+ HA+ VGYG+ K ++KNSWG+ WGEK
Sbjct: 157 VE-HAVTAVGYGKSGGKGYI-----LIKNSWGTAWGEK 188
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 24/195 (12%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LPE DWR +G ++ V+ QG C CWAFSAV VE ++ I+ L ELS Q+LVDC+ +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
GC GG AL+Y+ N G+ YPYKA + C R+
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQVGGPIVKTSGVGRVQPNN 117
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLYGTSIPYWI------------ 461
E + +A + P+SV + + G + Y GG+ + GT + + +
Sbjct: 118 EGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIF---EGPCGTKVDHAVTAVGYGKSGGKG 173
Query: 462 ---VKNSWGSDWGEK 473
+KNSWG+ WGEK
Sbjct: 174 YILIKNSWGTAWGEK 188
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LPE DWR +G ++ V+ QG C CWAFSAV VE ++ I+ L ELS Q
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQ 51
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
KL L+ ++LVDC+ + GC GG AL+Y+ N G+ YPYKA + C
Sbjct: 44 KLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQV 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
R+ E + +A + P+SV + + G + Y GG+ + C K
Sbjct: 101 GGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIF---EGPCGTK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
+HA+ VGYG+ K ++KNSWG+ WGEK
Sbjct: 157 V-DHAVTAVGYGKSGGKGYI-----LIKNSWGTAWGEK 188
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 28/198 (14%)
Query: 299 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGC 358
A+DWR ++ VK+Q C WAFS++G VE+ +AI+ N L LS Q+LVDC N GC
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 359 NGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEE 418
NGG +++A + +I+ GG+ D YPY S++ C Y +P + +
Sbjct: 80 NGGLINNAFEDMIELGGICPDGDYPY-VSDAPNLC-NIDRCTEKYGIKNYLSVP---DNK 134
Query: 419 MKKWVATRGPLSVGMNANGLF-YYSGGVID------LNQRLY----------------GT 455
+K+ + GP+S+ + + F +Y G+ D LN + G
Sbjct: 135 LKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 194
Query: 456 SIPYWIVKNSWGSDWGEK 473
Y+I+KNSWG WGE+
Sbjct: 195 KHYYYIIKNSWGQQWGER 212
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 15/166 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
+ +KL L+ ++LVDC N GCNGG +++A + +I+ GG+ D YPY S++ C
Sbjct: 56 IRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPY-VSDAPNLC- 113
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLC 611
Y +P + ++K+ + GP+S+ + + F +Y G+ D C
Sbjct: 114 NIDRCTEKYGIKNYLSVP---DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE---C 167
Query: 612 NPKAQNHALIIVGYGEEE-----KKDGTSIPYWIVKNSWGSDWGEK 652
+ NHA+++VG+G +E K G Y+I+KNSWG WGE+
Sbjct: 168 GDQL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 212
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 151 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
A+DWR ++ VK+Q C WAFS++G VE+ +AI+ N L LS Q
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQ 67
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 9/152 (5%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q LVDC G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GCNGG MD A QY+ DNGG+ S+++YPY+A+E + IP
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG 443
+E+ + K VAT GP+SV ++A LFY G
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEG 149
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
+L L+ + LVDC G GCNGG MD A QY+ DNGG+ S+++YPY+A+E
Sbjct: 44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
+ IP +E+ + K VAT GP+SV ++A LFY G + + C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEE 628
+ + +H +++VGYG E
Sbjct: 157 SSEDMDHGVLVVGYGFE 173
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G ++ VK QG+C WAFSA G +E + L LS Q+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQN 52
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
P +DWR++G ++KVK+QG C CWAFS G VE + +L LS Q+L+DCD +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
C GG +A I + GG+ ++ Y Y+ S+ E
Sbjct: 62 ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQ----NE 117
Query: 417 EEMKKWVATRGPLSVGMNANGLFYYSGGV------------IDLNQRLYG----TSIPYW 460
+++ W+A RGP+SV +NA G+ +Y G+ ID L G + +P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 461 IVKNSWGSDWGEK 473
+KNSWG+DWGEK
Sbjct: 178 AIKNSWGTDWGEK 190
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 508 DCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYS 567
DCD + C GG +A I + GG+ ++ Y Y+ S
Sbjct: 55 DCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELS 114
Query: 568 RIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGE 627
+ E+++ W+A RGP+SV +NA G+ +Y G+ + LC+P +HA+++VGYG+
Sbjct: 115 Q----NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQ 170
Query: 628 EEKKDGTSIPYWIVKNSWGSDWGEK 652
+ +P+W +KNSWG+DWGEK
Sbjct: 171 R-----SDVPFWAIKNSWGTDWGEK 190
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVE 182
P +DWR++G ++KVK+QG C CWAFS G VE
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVE 35
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 297 PEAFDWRAEG-VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDC--DM 353
P + DWR +G +S VK QG C CW FS G +E+ AI + L+ QQLVDC +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 354 SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
+N GC GG A +YI N G++ + YPYK + + I
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH---CKFQPDKAIAFVKDVANITM 118
Query: 414 GEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVID----------LNQRL----YG--TS 456
+EE M + VA P+S N Y G+ +N + YG
Sbjct: 119 NDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENG 178
Query: 457 IPYWIVKNSWGSDWG 471
IPYWIVKNSWG WG
Sbjct: 179 IPYWIVKNSWGPQWG 193
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 491 TGVLPSKLSRLATEKLVDC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE 548
+ K+ LA ++LVDC + +N GC GG A +YI N G++ + YPYK +
Sbjct: 39 VAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH 98
Query: 549 RGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLN 607
+ I +EE M + VA P+S N Y G+
Sbjct: 99 ---CKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSST 155
Query: 608 QRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
P NHA++ VGYGEE IPYWIVKNSWG WG
Sbjct: 156 SCHKTPDKVNHAVLAVGYGEE-----NGIPYWIVKNSWGPQWG 193
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 149 PEAFDWRAEG-VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
P + DWR +G +S VK QG C CW FS G +E+ AI + L+ Q
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQ 53
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 96/194 (49%), Gaps = 24/194 (12%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
LPE+ DWRA+G ++ VK QG C CWAFS V VE ++ I+ +L ELS Q+LVDCD+ +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
GCN G +LQY+ N G+ YPY A + C R+
Sbjct: 61 YGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQT--CRANQVGGPKVKTNGVGRVQSNN 117
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLYGTSIPYWI------------ 461
E + +A + P+SV + + G + Y GG+ + + GT + + +
Sbjct: 118 EGSLLNAIAHQ-PVSVVVESAGRDFQNYKGGIFEGS---CGTKVDHAVTAVGYGKSGGKG 173
Query: 462 ---VKNSWGSDWGE 472
+KNSWG WGE
Sbjct: 174 YILIKNSWGPGWGE 187
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
LPE+ DWRA+G ++ VK QG C CWAFS V VE ++ I+ NL ELS Q
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQ 51
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L L+ ++LVDCD+ + GCN G +LQY+ N G+ YPY A + C
Sbjct: 45 LVELSEQELVDCDLQSYGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQT--CRANQVG 101
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPKA 615
R+ E + +A + P+SV + + G + Y GG+ + + C K
Sbjct: 102 GPKVKTNGVGRVQSNNEGSLLNAIAHQ-PVSVVVESAGRDFQNYKGGIFEGS---CGTKV 157
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+HA+ VGYG+ K ++KNSWG WGE
Sbjct: 158 -DHAVTAVGYGKSGGKGYI-----LIKNSWGPGWGE 187
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
+PE DWR +G ++ VK QG C CWAFSAV +E + I+ +L E S Q+L+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
GCNGG ALQ ++ G+ YPY+ +R C ++ PY
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
E + + P+SV + A G + Y GG+ +D G Y ++KN
Sbjct: 118 EGALL--YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
SWG+ WGE
Sbjct: 176 SWGTGWGE 183
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+PE DWR +G ++ VK QG C CWAFSAV +E + I+ NL E S Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQ 51
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L+ + ++L+DCD + GCNGG ALQ ++ G+ YPY+ +R C
Sbjct: 45 LNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
++ PY E + + P+SV + A G + Y GG+ C K
Sbjct: 102 PYAAKTDGVRQVQPYNEGALL--YSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+HA+ VGYG Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
+PE DWR +G ++ VK QG C CWAFSAV +E + I+ +L + S Q+L+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
GCNGG ALQ ++ G+ YPY+ +R C ++ PY
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
+ + + P+SV + A G + Y GG+ +D G Y ++KN
Sbjct: 118 QGALL--YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
SWG+ WGE
Sbjct: 176 SWGTGWGE 183
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+PE DWR +G ++ VK QG C CWAFSAV +E + I+ NL + S Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQ 51
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L++ + ++L+DCD + GCNGG ALQ ++ G+ YPY+ +R C
Sbjct: 45 LNQYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
++ PY + + + P+SV + A G + Y GG+ C K
Sbjct: 102 PYAAKTDGVRQVQPYNQGALL--YSIANQPVSVVLQAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+HA+ VGYG Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
PE DWR +G ++ VK QG C CWAFSAV +E + I+ +L + S Q+L+DCD +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYGE 415
GCNGG ALQ ++ G+ YPY+ +R C ++ PY +
Sbjct: 62 GCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKNS 465
+ + P+SV + A G + Y GG+ +D G Y ++KNS
Sbjct: 119 GALL--YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKNS 176
Query: 466 WGSDWGE 472
WG+ WGE
Sbjct: 177 WGTGWGE 183
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
PE DWR +G ++ VK QG C CWAFSAV +E + I+ NL + S Q
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQ 51
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L++ + ++L+DCD + GCNGG ALQ ++ G+ YPY+ +R C
Sbjct: 45 LNQYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
++ PY + + + P+SV + A G + Y GG+ C K
Sbjct: 102 PYAAKTDGVRQVQPYNQGALL--YSIANQPVSVVLQAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+HA+ VGYG Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
+P + DWR +G ++ V+ QG C CW FS+V VE ++ I L LS Q+L+DC+ +
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
GC GG ALQY+ N G+ Q YPY+ +R C R+P
Sbjct: 61 YGCRGGFPLYALQYVA-NSGIHLRQYYPYEG--VQRQCRASQAKGPKVKTDGVGRVPRNN 117
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKNS 465
E+ + + +A + P+S+ + A G + Y GG+ ID G Y ++KNS
Sbjct: 118 EQALIQRIAIQ-PVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGNDYILIKNS 176
Query: 466 WGSDWGE 472
WG+ WGE
Sbjct: 177 WGTGWGE 183
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 23/148 (15%)
Query: 508 DCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYS 567
DC+ + GC GG ALQY+ N G+ Q YPY+ +R C
Sbjct: 55 DCERRSYGCRGGFPLYALQYVA-NSGIHLRQYYPYEG--VQRQCRASQAKGPKVKTDGVG 111
Query: 568 RIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNP--KAQNHALIIV 623
R+P E+ + + +A + P+S+ + A G + Y GG+ P + +HA+ V
Sbjct: 112 RVPRNNEQALIQRIAIQ-PVSIVVEAKGRAFQNYRGGI------FAGPCGTSIDHAVAAV 164
Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
GYG + Y ++KNSWG+ WGE
Sbjct: 165 GYGND---------YILIKNSWGTGWGE 183
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAI 187
+P + DWR +G ++ V+ QG C CW FS+V VE ++ I
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKI 40
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
+PE DWR +G ++ VK QG C WAFSAV +E + I+ +L + S Q+L+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
GCNGG ALQ ++ G+ YPY+ +R C ++ PY
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
E + + P+SV + A G + Y GG+ +D G Y ++KN
Sbjct: 118 EGALL--YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
SWG+ WGE
Sbjct: 176 SWGTGWGE 183
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L++ + ++L+DCD + GCNGG ALQ ++ G+ YPY+ +R C
Sbjct: 45 LNQYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
++ PY E + + P+SV + A G + Y GG+ C K
Sbjct: 102 PYAAKTDGVRQVQPYNEGALL--YSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+HA+ VGYG Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+PE DWR +G ++ VK QG C WAFSAV +E + I+ NL + S Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQ 51
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
+PE DWR +G ++ VK QG C WAFSAV +E + I+ +L + S Q+L+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
GCNGG ALQ ++ G+ YPY+ +R C ++ PY
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
+ + + P+SV + A G + Y GG+ +D G Y ++KN
Sbjct: 118 QGALL--YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
SWG+ WGE
Sbjct: 176 SWGTGWGE 183
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L++ + ++L+DCD + GCNGG ALQ ++ G+ YPY+ +R C
Sbjct: 45 LNQYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
++ PY + + + P+SV + A G + Y GG+ C K
Sbjct: 102 PYAAKTDGVRQVQPYNQGALL--YSIANQPVSVVLQAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+HA+ VGYG Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+PE DWR +G ++ VK QG C WAFSAV +E + I+ NL + S Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQ 51
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
+PE DWR +G ++ VK QG C WAFSAV +E + I+ +L E S Q+L+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
GCNGG ALQ ++ G+ YPY+ +R C ++ PY
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
E + + P+SV + A G + Y GG+ +D G Y ++KN
Sbjct: 118 EGALL--YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
SWG+ WGE
Sbjct: 176 SWGTGWGE 183
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+PE DWR +G ++ VK QG C WAFSAV +E + I+ NL E S Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQ 51
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
L+ + ++L+DCD + GCNGG ALQ ++ G+ YPY+ +R C
Sbjct: 45 LNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
++ PY E + + P+SV + A G + Y GG+ C K
Sbjct: 102 PYAAKTDGVRQVQPYNEGALL--YSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+HA+ VGYG Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 44/213 (20%)
Query: 296 LPEAFDWR-AEGV--ISKVKEQGKCACCWAFSAVGVVEA-MHAIQGNSLTE-LSVQQLVD 350
LPE++DWR G+ +S V+ Q C C++F+++G++EA + + NS T LS Q++V
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 351 CDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES----ERGCLXXXXXXX 401
C GC+GG Y+I + GVV + +PY A+++ + CL
Sbjct: 266 CSPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEY 320
Query: 402 XXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--------GLFYYSG-----GVIDL 448
Y E MK + GP++V + G+++++G +L
Sbjct: 321 YYVGGFYGGC---NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFEL 377
Query: 449 NQRL-----YG----TSIPYWIVKNSWGSDWGE 472
YG T + YWIVKNSWGS WGE
Sbjct: 378 TNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGE 410
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 496 SKLSRLATEKLVDCDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES--- 547
S+ L+ +++V C GC+GG Y+I + GVV + +PY A+++
Sbjct: 253 SQTPILSPQEVVSCSPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCK 307
Query: 548 -ERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDL 606
+ CL Y E MK + GP++V + F + I
Sbjct: 308 PKENCLRYYSSEYYYVGGFYGGC---NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYH 364
Query: 607 NQRLCNP----KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+ L +P + NHA+++VGYG K T + YWIVKNSWGS WGE
Sbjct: 365 HTGLSDPFNPFELTNHAVLLVGYG---KDPVTGLDYWIVKNSWGSQWGE 410
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 28/207 (13%)
Query: 284 AFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTEL 343
A + NS+ ++P D R+ ++ ++ QG C CWAFS V E+ + N+ +L
Sbjct: 3 ACRINSV----NVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDL 58
Query: 344 SVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXX 403
S Q+LVDC S GC+G + ++YI N GVV +++YPY A E
Sbjct: 59 SEQELVDC-ASQHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQR----CRRPNSQHY 112
Query: 404 XXXXYSRIPYGEEEEMKKWVA-TRGPLSVGMNANGLF---YYSGGVI------------D 447
Y +I + +++++ + T ++V + L +Y G I
Sbjct: 113 GISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHA 172
Query: 448 LNQRLYGTSI--PYWIVKNSWGSDWGE 472
+N YG++ YWIV+NSW + WG+
Sbjct: 173 VNIVGYGSTQGDDYWIVRNSWDTTWGD 199
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
L+ ++LVDC S GC+G + ++YI NG VV +++YPY A E
Sbjct: 58 LSEQELVDC-ASQHGCHGDTIPRGIEYIQQNG-VVEERSYPYVAREQR----CRRPNSQH 111
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGMNANGLF---YYSGGVIDLNQRLCNPKAQ 616
Y +I + +++++ + T ++V + L +Y G I + P
Sbjct: 112 YGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNY- 170
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
HA+ IVGYG + D YWIV+NSW + WG+
Sbjct: 171 -HAVNIVGYGSTQGDD-----YWIVRNSWDTTWGD 199
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 136 AFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTEL 195
A + NS+ ++P D R+ ++ ++ QG C CWAFS V E+ + N +L
Sbjct: 3 ACRINSV----NVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDL 58
Query: 196 SVQ-----------HHDKVYSSVEDLLR------RHENFVTNVEKAEDYQSEDSGTAVFG 238
S Q H D + +E + + R +V ++ S+ +G
Sbjct: 59 SEQELVDCASQHGCHGDTIPRGIEYIQQNGVVEERSYPYVAREQRCRRPNSQH-----YG 113
Query: 239 VNKFFDLSESDLQQL 253
++ + + D++Q+
Sbjct: 114 ISNYCQIYPPDVKQI 128
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 44/213 (20%)
Query: 296 LPEAFDWR-AEGV--ISKVKEQGKCACCWAFSAVGVVEA-MHAIQGNSLTE-LSVQQLVD 350
LP ++DWR G+ +S V+ Q C C++F+++G++EA + + NS T LS Q++V
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 351 CDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES----ERGCLXXXXXXX 401
C GC GG Y+I + G+V + +PY ++S + C
Sbjct: 267 CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEY 321
Query: 402 XXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNA--------NGLFYYSG-----GVIDL 448
Y E MK + GP++V G+++++G +L
Sbjct: 322 HYVGGFYGGC---NEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFEL 378
Query: 449 NQRL-----YGT----SIPYWIVKNSWGSDWGE 472
YGT + YWIVKNSWG+ WGE
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGE 411
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 496 SKLSRLATEKLVDCDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES--- 547
S+ L+ +++V C GC GG Y+I + G+V + +PY ++S
Sbjct: 254 SQTPILSPQEVVSCSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCK 308
Query: 548 -ERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDL 606
+ C Y E MK + GP++V F + I
Sbjct: 309 MKEDCFRYYSSEYHYVGGFYGGC---NEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYH 365
Query: 607 NQRLCNP----KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
+ L +P + NHA+++VGYG + + + YWIVKNSWG+ WGE
Sbjct: 366 HTGLRDPFNPFELTNHAVLLVGYGTD---SASGMDYWIVKNSWGTGWGE 411
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 45/290 (15%)
Query: 201 DKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDS 260
+K Y++ ED +NF+ +V K+ + + L+ L+LD
Sbjct: 16 NKSYATFEDEEAARKNFLESV-------------------KYVQSNGGAINHLSDLSLDE 56
Query: 261 TLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACC 320
S +A F +T ++ A + N+ + P D R ++ ++ QG C
Sbjct: 57 FKNRFLMSAEA-FEHLKTQFDLNA-ETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114
Query: 321 WAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQ 380
WAFS V E+ + + +L+ Q+LVDC S GC+G + ++YI N GVV +
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDC-ASQHGCHGDTIPRGIEYIQHN-GVVQES 172
Query: 381 AYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NAN 436
Y Y A E+ C Y +I ++++ +A T ++V + + +
Sbjct: 173 YYRYVA--REQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLD 228
Query: 437 GLFYYSGGVIDLNQRLY--------------GTSIPYWIVKNSWGSDWGE 472
+Y G I Y + YWIV+NSW ++WG+
Sbjct: 229 AFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGD 278
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
LA ++LVDC S GC+G + ++YI NG VV + Y Y A E + C
Sbjct: 137 LAEQELVDC-ASQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVARE--QSC--RRPNAQR 190
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLCNPKAQ 616
Y +I ++++ +A T ++V + + + +Y G I QR +
Sbjct: 191 FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 248
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
HA+ IVGY + D YWIV+NSW ++WG+
Sbjct: 249 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGD 278
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 21/146 (14%)
Query: 40 SPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSD 99
S + F + + +K Y++ ED +NF+ +V K+ +
Sbjct: 3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESV-------------------KYVQSNG 43
Query: 100 SDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGV 159
+ L+ L+LD S +A F +T ++ A + N+ + P D R
Sbjct: 44 GAINHLSDLSLDEFKNRFLMSAEA-FEHLKTQFDLNA-ETNACSINGNAPAEIDLRQMRT 101
Query: 160 ISKVKEQGKCACCWAFSAVGVVEAMH 185
++ ++ QG C WAFS V E+ +
Sbjct: 102 VTPIRMQGGCGSAWAFSGVAATESAY 127
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 24/197 (12%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
+ P D R ++ ++ QG C CWAFS V E+ + N +L+ Q+LVDC S
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC-AS 67
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GC+G + ++YI N GVV + Y Y A E+ C Y +I
Sbjct: 68 QHGCHGDTIPRGIEYIQHN-GVVQESYYRYVA--REQSC--RRPNAQRFGISNYCQIYPP 122
Query: 415 EEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLY--------------GTS 456
++++ +A T ++V + + + +Y G I Y
Sbjct: 123 NVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQG 182
Query: 457 IPYWIVKNSWGSDWGEK 473
+ YWIV+NSW ++WG+
Sbjct: 183 VDYWIVRNSWDTNWGDN 199
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
LA ++LVDC S GC+G + ++YI NG VV + Y Y A E + C
Sbjct: 57 LAEQELVDC-ASQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVARE--QSC--RRPNAQR 110
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLCNPKAQ 616
Y +I ++++ +A T ++V + + + +Y G I QR +
Sbjct: 111 FGISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 168
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
HA+ IVGY + D YWIV+NSW ++WG+
Sbjct: 169 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 199
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
+ P D R ++ ++ QG C CWAFS V E+ + N +L+ Q
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQ 60
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 24/197 (12%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
+ P D R ++ ++ QG C CWAFS V E+ + +L+ Q+LVDC S
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC-AS 67
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GC+G + ++YI N GVV + Y Y A E+ C Y +I
Sbjct: 68 QHGCHGDTIPRGIEYIQHN-GVVQESYYRYVA--REQSC--RRPNAQRFGISNYCQIYPP 122
Query: 415 EEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLY--------------GTS 456
++++ +A T ++V + + + +Y G I Y
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQG 182
Query: 457 IPYWIVKNSWGSDWGEK 473
+ YWIV+NSW ++WG+
Sbjct: 183 VDYWIVRNSWDTNWGDN 199
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
LA ++LVDC S GC+G + ++YI NG VV + Y Y A E + C
Sbjct: 57 LAEQELVDC-ASQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVARE--QSC--RRPNAQR 110
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLCNPKAQ 616
Y +I ++++ +A T ++V + + + +Y G I QR +
Sbjct: 111 FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 168
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
HA+ IVGY + D YWIV+NSW ++WG+
Sbjct: 169 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 199
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMH 185
+ P D R ++ ++ QG C CWAFS V E+ +
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAY 47
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
+ P D R ++ ++ QG C WAFS V E+ + +L+ Q+LVDC S
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC-AS 67
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
GC+G + ++YI N GVV + Y Y A E+ C Y +I
Sbjct: 68 QHGCHGDTIPRGIEYIQHN-GVVQESYYRYVA--REQSC--RRPNAQRFGISNYCQIYPP 122
Query: 415 EEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLY--------------GTS 456
++++ +A T ++V + + + +Y G I Y
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQG 182
Query: 457 IPYWIVKNSWGSDWGEK 473
+ YWIV+NSW ++WG+
Sbjct: 183 VDYWIVRNSWDTNWGDN 199
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
LA ++LVDC S GC+G + ++YI NG VV + Y Y A E + C
Sbjct: 57 LAEQELVDC-ASQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVARE--QSC--RRPNAQR 110
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLCNPKAQ 616
Y +I ++++ +A T ++V + + + +Y G I QR +
Sbjct: 111 FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 168
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
HA+ IVGY + D YWIV+NSW ++WG+
Sbjct: 169 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 199
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMH 185
+ P D R ++ ++ QG C WAFS V E+ +
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAY 47
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 84/228 (36%), Gaps = 50/228 (21%)
Query: 295 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ--GNSLTELSVQQL 348
++P +FD W I+ +++Q +C CWAF AV + IQ G ELS L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 349 VDCDMSNG-GCNGGRMDDALQYIIDNGGVVSD--------QAYPYKASESER-------G 392
+ C S G GC GG + A Y + G V + YP+ E G
Sbjct: 62 LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 393 CLXXXXXXXXXXXXXYSRIPY--------------GEEEEMKKWVATRGPLSVGMNANGL 438
+ PY +E+ ++K + GP+ G
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYED 181
Query: 439 FY-YSGGVID--LNQRLYGTSI-----------PYWIVKNSWGSDWGE 472
F Y G+ + L G +I PYW++ NSW DWGE
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGE 229
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 65/181 (35%), Gaps = 40/181 (22%)
Query: 502 ATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSD--------QAYPYKASESER---- 549
A + L C+ GC GG + A Y + G V + YP+ E
Sbjct: 58 AVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKY 117
Query: 550 ---GCLXXXXXXXXXXXXXYSRIPY--------------GEEEEMKKWVATRGPLSVGMN 592
G + PY +E+ ++K + GP+ G
Sbjct: 118 PPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFT 177
Query: 593 A--NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
+ L Y SG + + + HA+ I+G+G E K PYW++ NSW DWG
Sbjct: 178 VYEDFLNYKSG----IYKHITGETLGGHAIRIIGWGVENK-----APYWLIANSWNEDWG 228
Query: 651 E 651
E
Sbjct: 229 E 229
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 147 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ--GNNLTELSV 197
++P +FD W I+ +++Q +C CWAF AV + IQ G ELS
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSA 58
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 44/218 (20%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL-TELSVQQLVD 350
LP +FD W I ++ +Q C CWA +A + G +S L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 351 CDMSNG-GCNGGRMDDALQYIIDNGGVVSD--QAYPYK----ASESERGCLXXXXXXXXX 403
C G GCNGG D A Y + G+VSD Q YP+ S+S+ G
Sbjct: 154 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 212
Query: 404 XXXXYS----RIPY------------GEEEEMKKWVATRGPLSVGMNA--------NGLF 439
Y+ IP GE++ M++ + RGP V + +G++
Sbjct: 213 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY 271
Query: 440 YYSGGVIDLNQRL----YGTS--IPYWIVKNSWGSDWG 471
++ G + +GTS +PYW + NSW ++WG
Sbjct: 272 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG 309
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 86/218 (39%), Gaps = 40/218 (18%)
Query: 456 SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGG 515
+IP +++ GS W +S R + GV +S A + L C G
Sbjct: 109 TIPQIADQSACGSCWA-----VAAASAMSDRFCTMGGVQDVHIS--AGDLLACCSDCGDG 161
Query: 516 CNGGRMDDALQYIIDNGGVVSD--QAYPYKA----SESERGCLXXXXXXXXXXXXXYS-- 567
CNGG D A Y + G+VSD Q YP+ S+S+ G Y+
Sbjct: 162 CNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCD 220
Query: 568 --RIPY------------GEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCN 612
IP GE++ M++ + RGP V + Y+ GV +
Sbjct: 221 DPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY---HHVSG 276
Query: 613 PKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
HA+ +VG+G +PYW + NSW ++WG
Sbjct: 277 QYLGGHAVRLVGWGTSN-----GVPYWKIANSWNTEWG 309
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 44/218 (20%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL-TELSVQQLVD 350
LP +FD W I ++ +Q C CWA +A + G +S L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 351 CDMSNG-GCNGGRMDDALQYIIDNGGVVSD--QAYPYK----ASESERGCLXXXXXXXXX 403
C G GCNGG D A Y + G+VSD Q YP+ S+S+ G
Sbjct: 131 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 189
Query: 404 XXXXYS----RIPY------------GEEEEMKKWVATRGPLSVGMNA--------NGLF 439
Y+ IP GE++ M++ + RGP V + +G++
Sbjct: 190 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY 248
Query: 440 YYSGGVIDLNQRL----YGTS--IPYWIVKNSWGSDWG 471
++ G + +GTS +PYW + NSW ++WG
Sbjct: 249 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG 286
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 40/218 (18%)
Query: 456 SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGG 515
+IP +++ GS W +S R + GV +S A + L C G
Sbjct: 86 TIPQIADQSACGSCWA-----VAAASAMSDRFCTMGGVQDVHIS--AGDLLACCSDCGDG 138
Query: 516 CNGGRMDDALQYIIDNGGVVSD--QAYPYKA----SESERGCLXXXXXXXXXXXXXYS-- 567
CNGG D A Y + G+VSD Q YP+ S+S+ G Y+
Sbjct: 139 CNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCD 197
Query: 568 --RIPY------------GEEEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDLNQRLCN 612
IP GE++ M++ + RGP V + F Y+ GV +
Sbjct: 198 DPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY---HHVSG 253
Query: 613 PKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
HA+ +VG+G +PYW + NSW ++WG
Sbjct: 254 QYLGGHAVRLVGWGTSN-----GVPYWKIANSWNTEWG 286
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 44/218 (20%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL-TELSVQQLVD 350
LP +FD W I ++ +Q C CWA +A + G +S L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 351 CDMSNG-GCNGGRMDDALQYIIDNGGVVSD--QAYPYK----ASESERGCLXXXXXXXXX 403
C G GCNGG D A Y + G+VSD Q YP+ S+S+ G
Sbjct: 132 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 190
Query: 404 XXXXYS----RIPY------------GEEEEMKKWVATRGPLSVGMNA--------NGLF 439
Y+ IP GE++ M++ + RGP V + +G++
Sbjct: 191 PKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY 249
Query: 440 YYSGGVIDLNQRL----YGTS--IPYWIVKNSWGSDWG 471
++ G + +GTS +PYW + NSW ++WG
Sbjct: 250 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG 287
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 86/218 (39%), Gaps = 40/218 (18%)
Query: 456 SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGG 515
+IP +++ GS W +S R + GV +S A + L C G
Sbjct: 87 TIPQIADQSACGSCWA-----VAAASAMSDRFCTMGGVQDVHIS--AGDLLACCSDCGDG 139
Query: 516 CNGGRMDDALQYIIDNGGVVSD--QAYPYKA----SESERGCLXXXXXXXXXXXXXYS-- 567
CNGG D A Y + G+VSD Q YP+ S+S+ G Y+
Sbjct: 140 CNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCD 198
Query: 568 --RIPY------------GEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCN 612
IP GE++ M++ + RGP V + Y+ GV +
Sbjct: 199 DPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY---HHVSG 254
Query: 613 PKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
HA+ +VG+G +PYW + NSW ++WG
Sbjct: 255 QYLGGHAVRLVGWGTSN-----GVPYWKIANSWNTEWG 287
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
LP +FD W I ++++QG C CWAF AV + I N+ E+S + L+
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
C M GCNGG +A + G+VS Y PY E C
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
P YG E+++ + GP+ + + ++
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 242
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
L Y SG + + G PYW+V NSW +DWG+
Sbjct: 243 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 290
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+++ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 220 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVTGEMMGGHAIRILGWGVE--- 272
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 273 NGT--PYWLVANSWNTDWGD 290
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKV 203
LP +FD W I ++++QG C CWAF AV + I N H V
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNA--------HVSV 115
Query: 204 YSSVEDLL 211
S EDLL
Sbjct: 116 EVSAEDLL 123
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 296 LPEAFDWR-AEGV--ISKVKEQGKCACCWAFSAVGVVEA-MHAIQGNSLTE-LSVQQLVD 350
LP ++DWR G+ +S V+ Q C C++F+++G++EA + + NS T LS Q++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 351 CDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES 389
C GC GG Y+I + G+V + +PY ++S
Sbjct: 61 CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDS 99
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
LP +FD W I ++++QG C CWAF AV + I N+ E+S + L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
C M GCNGG +A + G+VS Y PY E C
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
P YG E+++ + GP+ + + ++
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 181
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
L Y SG + + G PYW+V NSW +DWG+
Sbjct: 182 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 229
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+++ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 159 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVTGEMMGGHAIRILGWGVE--- 211
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 212 NGT--PYWLVANSWNTDWGD 229
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKV 203
LP +FD W I ++++QG C CWAF AV + I N H V
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNA--------HVSV 54
Query: 204 YSSVEDLL 211
S EDLL
Sbjct: 55 EVSAEDLL 62
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
LP +FD W I ++++QG C CWAF AV + I N+ E+S + L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
C M GCNGG +A + G+VS Y PY E C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
P YG E+++ + GP+ + + ++
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
L Y SG + + G PYW+V NSW +DWG+
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 227
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+++ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 157 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVTGEMMGGHAIRILGWGVE--- 209
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 210 NGT--PYWLVANSWNTDWGD 227
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKV 203
LP +FD W I ++++QG C CWAF AV + I N H V
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNA--------HVSV 52
Query: 204 YSSVEDLL 211
S EDLL
Sbjct: 53 EVSAEDLL 60
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
LP +FD W I ++++QG C CWAF AV + I N+ E+S + L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
C M GCNGG +A + G+VS Y PY E C
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
P YG E+++ + GP+ + + ++
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
L Y SG + + G PYW+V NSW +DWG+
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 228
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+++ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 158 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVTGEMMGGHAIRILGWGVE--- 210
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 211 NGT--PYWLVANSWNTDWGD 228
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKV 203
LP +FD W I ++++QG C CWAF AV + I N H V
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNA--------HVSV 53
Query: 204 YSSVEDLL 211
S EDLL
Sbjct: 54 EVSAEDLL 61
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 35/212 (16%)
Query: 295 DLPEAFDWR-AEGV--ISKVKEQG---KCACCWAFSAVGVVEAMHAIQGNSL---TELSV 345
DLP+++DWR +GV S + Q C CWA ++ + I+ T LSV
Sbjct: 35 DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSV 94
Query: 346 QQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE----RGCLXXXXXXX 401
Q ++DC + G C GG Y +G + + Y+A + E C
Sbjct: 95 QNVIDCGNA-GSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKDQECDKFNQCGTCNEFKE 152
Query: 402 XXXXXXYSRIPYGE------EEEMKKWVATRGPLSVG-MNANGLFYYSGGVIDLNQRL-- 452
Y+ G+ E+M + GP+S G M L Y+GG+ Q
Sbjct: 153 CHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY 212
Query: 453 ---------YGTS--IPYWIVKNSWGSDWGEK 473
+G S YWIV+NSWG WGE+
Sbjct: 213 INHVVSVAGWGISDGTEYWIVRNSWGEPWGER 244
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 487 DLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE 546
+++ G PS L L+ + ++DC + G C GG Y +G + + Y+A +
Sbjct: 80 NIKRKGAWPSTL--LSVQNVIDCGNA-GSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKD 135
Query: 547 SE----RGCLXXXXXXXXXXXXXYSRIPYGE------EEEMKKWVATRGPLSVG-MNANG 595
E C Y+ G+ E+M + GP+S G M
Sbjct: 136 QECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER 195
Query: 596 LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML 655
L Y+GG+ Q + NH + + G+G DGT YWIV+NSWG WGE+ L
Sbjct: 196 LANYTGGIYAEYQ---DTTYINHVVSVAGWG---ISDGTE--YWIVRNSWGEPWGERGWL 247
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 82/229 (35%), Gaps = 52/229 (22%)
Query: 295 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQL 348
+LPE+FD W I+++++QG C CWAF AV + I N E+S + L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 349 VDCD--MSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESERGC------ 393
+ C GCNGG A + G+VS Y PY E
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 124
Query: 394 -------------LXXXXXXXXXXXXXYSRIPYG---EEEEMKKWVATRGPLSVGMNA-- 435
Y Y E+E+ + GP+
Sbjct: 125 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 184
Query: 436 ------NGLFYYSGGVIDLNQ--RLYGTSI----PYWIVKNSWGSDWGE 472
+G++ + G + R+ G I PYW+V NSW +DWG+
Sbjct: 185 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGD 233
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 147 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDK 202
+LPE+FD W I+++++QG C CWAF AV + I N + V
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEV----- 60
Query: 203 VYSSVEDLL 211
S EDLL
Sbjct: 61 ---SAEDLL 66
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
HA+ I+G+G E +PYW+V NSW +DWG+
Sbjct: 205 HAIRILGWGIE-----NGVPYWLVANSWNADWGD 233
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 81/228 (35%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
LPE+FD W I+++++QG C CWAF AV + I N E+S + L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 350 DCD--MSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESERGC------- 393
C GCNGG A + G+VS Y PY E
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 394 ------------LXXXXXXXXXXXXXYSRIPYG---EEEEMKKWVATRGPLSVGMNA--- 435
Y Y E+E+ + GP+
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 179
Query: 436 -----NGLFYYSGGVIDLNQ--RLYGTSI----PYWIVKNSWGSDWGE 472
+G++ + G + R+ G I PYW+V NSW +DWG+
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGD 227
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKV 203
LPE+FD W I+++++QG C CWAF AV + I N + V
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEV------ 54
Query: 204 YSSVEDLL 211
S EDLL
Sbjct: 55 --SAEDLL 60
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
HA+ I+G+G E +PYW+V NSW +DWG+
Sbjct: 199 HAIRILGWGIE-----NGVPYWLVANSWNADWGD 227
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 487 DLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE 546
+++ G PS L L+ + ++DC + G C GG Y +G + + Y+A +
Sbjct: 45 NIKRKGAWPSTL--LSVQNVIDCGNA-GSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKD 100
Query: 547 SE----RGCLXXXXXXXXXXXXXYSRIPYGE------EEEMKKWVATRGPLSVGMNAN-G 595
E C Y+ G+ E+M + GP+S G+ A
Sbjct: 101 QECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER 160
Query: 596 LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML 655
L Y+GG+ Q + NH + + G+G DGT YWIV+NSWG WGE+ L
Sbjct: 161 LANYTGGIYAEYQ---DTTYINHVVSVAGWG---ISDGTE--YWIVRNSWGEPWGERGWL 212
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 86/211 (40%), Gaps = 35/211 (16%)
Query: 296 LPEAFDWR-AEGV--ISKVKEQG---KCACCWAFSAVGVVEAMHAIQGNSL---TELSVQ 346
LP+++DWR +GV S + Q C CWA ++ + I+ T LSVQ
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 347 QLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE----RGCLXXXXXXXX 402
++DC + G C GG Y +G + + Y+A + E C
Sbjct: 61 NVIDCGNA-GSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKDQECDKFNQCGTCNEFKEC 118
Query: 403 XXXXXYSRIPYGE------EEEMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRL--- 452
Y+ G+ E+M + GP+S G+ A L Y+GG+ Q
Sbjct: 119 HAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYI 178
Query: 453 --------YGTS--IPYWIVKNSWGSDWGEK 473
+G S YWIV+NSWG WGE+
Sbjct: 179 NHVVSVAGWGISDGTEYWIVRNSWGEPWGER 209
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 83/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
LP +FD W I ++++QG C WAF AV + I N+ E+S + L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
C M GCNGG +A + G+VS Y PY E C
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
P YG E+++ + GP+ + + ++
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 185
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
L Y SG + + G PYW+V NSW +DWG+
Sbjct: 186 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 233
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+++ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 163 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVTGEMMGGHAIRILGWGVE--- 215
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 216 NGT--PYWLVANSWNTDWGD 233
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKV 203
LP +FD W I ++++QG C WAF AV + I N H V
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNA--------HVSV 58
Query: 204 YSSVEDLL 211
S EDLL
Sbjct: 59 EVSAEDLL 66
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 520 RMDDALQYIIDNGGVVSDQAYP-------YKASESERGCLXXXXXXXXXXXXXYSRIPYG 572
+++D + DNG ++ ++ P Y A ESER + +I
Sbjct: 111 KVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESER---------FHDNMDAFVKI--- 158
Query: 573 EEEEMKKWVATRGPLSVGMNANGL--FYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEK 630
+K V +G + + A + + +SG + Q LC +HA+ IVGYG
Sbjct: 159 ----IKTEVMNKGSVIAYIKAENVMGYEFSGKKV---QNLCGDDTADHAVNIVGYGNYVN 211
Query: 631 KDGTSIPYWIVKNSWGSDWGEK 652
+G YWIV+NSWG WG++
Sbjct: 212 SEGEKKSYWIVRNSWGPYWGDE 233
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 310 KVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDA--- 366
+V++QG C W F++ +E + ++G T++S + +C G + R D+
Sbjct: 23 QVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANC---YKGEHKDRCDEGSSP 79
Query: 367 ---LQYIIDNGGVVSDQAYPYKASESERGC 393
LQ I D G + ++ YPY + C
Sbjct: 80 MEFLQIIEDYGFLPAESNYPYNYVKVGEQC 109
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 454 GTSIPYWIVKNSWGSDWGEKVEDKVGSSG 482
G YWIV+NSWG WG++ KV G
Sbjct: 214 GEKKSYWIVRNSWGPYWGDEGYFKVDMYG 242
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 81/229 (35%), Gaps = 52/229 (22%)
Query: 295 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQL 348
+LPE+FD W I+++++QG C WAF AV + I N E+S + L
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 349 VDCD--MSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESERGC------ 393
+ C GCNGG A + G+VS Y PY E
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 180
Query: 394 -------------LXXXXXXXXXXXXXYSRIPYG---EEEEMKKWVATRGPLSVGMNA-- 435
Y Y E+E+ + GP+
Sbjct: 181 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 240
Query: 436 ------NGLFYYSGGVIDLNQ--RLYGTSI----PYWIVKNSWGSDWGE 472
+G++ + G + R+ G I PYW+V NSW +DWG+
Sbjct: 241 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGD 289
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
HA+ I+G+G E +PYW+V NSW +DWG+
Sbjct: 261 HAIRILGWGIE-----NGVPYWLVANSWNADWGD 289
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 147 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDK 202
+LPE+FD W I+++++QG C WAF AV + I N + V
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEV----- 116
Query: 203 VYSSVEDLL 211
S EDLL
Sbjct: 117 ---SAEDLL 122
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 612 NP-KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
NP + NHA+++VGYG + + + YWIVKNSWG+ WGE
Sbjct: 4 NPFELTNHAVLLVGYGTDS---ASGMDYWIVKNSWGTGWGE 41
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
Query: 453 YGTS----IPYWIVKNSWGSDWGE 472
YGT + YWIVKNSWG+ WGE
Sbjct: 18 YGTDSASGMDYWIVKNSWGTGWGE 41
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 520 RMDDALQYIIDNGGVVSDQAYP-------YKASESERGCLXXXXXXXXXXXXXYSRIPYG 572
+++D + DNG ++ ++ P Y A ESER + +I
Sbjct: 112 KVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESER---------FHDNMDAFVKI--- 159
Query: 573 EEEEMKKWVATRGPLSVGMNANGL--FYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEK 630
+K V +G + + A + + +SG + + LC +HA+ IVGYG
Sbjct: 160 ----IKTEVMNKGSVIAYIKAENVMGYEFSGKKV---KNLCGDDTADHAVNIVGYGNYVN 212
Query: 631 KDGTSIPYWIVKNSWGSDWGEK 652
+G YWIV+NSWG WG++
Sbjct: 213 SEGEKKSYWIVRNSWGPYWGDE 234
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 310 KVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDA--- 366
+V++QG C W F++ +E + ++G T++S + +C G + R D+
Sbjct: 24 QVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANC---YKGEHKDRCDEGSSP 80
Query: 367 ---LQYIIDNGGVVSDQAYPYKASESERGC 393
LQ I D G + ++ YPY + C
Sbjct: 81 MEFLQIIEDYGFLPAESNYPYNYVKVGEQC 110
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 454 GTSIPYWIVKNSWGSDWGEKVEDKVGSSG 482
G YWIV+NSWG WG++ KV G
Sbjct: 215 GEKKSYWIVRNSWGPYWGDEGYFKVDMYG 243
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHD 201
LPE+FD W I ++++QG C CWAF AV + I N + V D
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAED 58
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+E+ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 157 EKEIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVSGEIMGGHAIRILGWGVE--- 209
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 210 NGT--PYWLVANSWNTDWGD 227
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSV 345
LPE+FD W I ++++QG C CWAF AV + I N + V
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEV 54
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 458 PYWIVKNSWGSDWGE 472
PYW+V NSW +DWG+
Sbjct: 213 PYWLVANSWNTDWGD 227
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKV 203
LPE+FD W I ++++QG C CWAF AV + I N + V
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEV------ 54
Query: 204 YSSVEDLL 211
S ED+L
Sbjct: 55 --SAEDML 60
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+E+ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 157 EKEIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVSGEIMGGHAIRILGWGVE--- 209
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 210 NGT--PYWLVGNSWNTDWGD 227
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSV 345
LPE+FD W I ++++QG C CWAF AV + I N + V
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEV 54
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 458 PYWIVKNSWGSDWGE 472
PYW+V NSW +DWG+
Sbjct: 213 PYWLVGNSWNTDWGD 227
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+E+ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 109 EKEIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVSGEIMGGHAIRILGWGVE--- 161
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 162 NGT--PYWLVGNSWNTDWGD 179
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 458 PYWIVKNSWGSDWGE 472
PYW+V NSW +DWG+
Sbjct: 165 PYWLVGNSWNTDWGD 179
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 148 LPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN 190
LPE+FD R + I ++++QG C CWAF AV + I N
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSN 47
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 296 LPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN 338
LPE+FD R + I ++++QG C CWAF AV + I N
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSN 47
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 574 EEEMKKWVATRGPL--SVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK 631
E+++ + GP+ + + ++ L Y SG + Q + HA+ I+G+G E
Sbjct: 108 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSG----VYQHVTGEMMGGHAIRILGWGVE--- 160
Query: 632 DGTSIPYWIVKNSWGSDWGE 651
+GT PYW+V NSW +DWG+
Sbjct: 161 NGT--PYWLVANSWNTDWGD 178
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 458 PYWIVKNSWGSDWGE 472
PYW+V NSW +DWG+
Sbjct: 164 PYWLVANSWNTDWGD 178
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 148 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN 190
LP +FD W I ++++QG C CWAF AV + I N
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 47
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN 338
LP +FD W I ++++QG C CWAF AV + I N
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 47
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 459 YWIVKNSWGSDWG 471
YW+VKNSWG +WG
Sbjct: 4 YWLVKNSWGEEWG 16
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 638 YWIVKNSWGSDWG 650
YW+VKNSWG +WG
Sbjct: 4 YWLVKNSWGEEWG 16
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
HA+ E++ +DG + W V+NSWG D G K
Sbjct: 371 HAMTFTAVSEKDDQDG-AFTKWRVENSWGEDHGHK 404
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
HA+ E++ +DG + W V+NSWG D G K
Sbjct: 371 HAMTFTAVSEKDDQDG-AFTKWRVENSWGEDHGHK 404
>pdb|3HVA|A Chain A, Crystal Structure Of Fimx Ggdef Domain From Pseudomonas
Aeruginosa
pdb|3HVA|B Chain B, Crystal Structure Of Fimx Ggdef Domain From Pseudomonas
Aeruginosa
Length = 177
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 222 EKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQ----PSLQA 271
EK + S+D T ++ + F DL ++ +QQ STL I PSLQA
Sbjct: 7 EKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQA 60
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 74 EKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLDSTLEDIQ----PSLQA 123
EK + +D T ++ + F DL D+ +QQ STL I PSLQA
Sbjct: 7 EKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQA 60
>pdb|4J40|A Chain A, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
pdb|4J40|B Chain B, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
Length = 437
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 74 EKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLDSTLEDIQ----PSLQA 123
EK + +D T ++ + F DL D+ +QQ STL I PSLQA
Sbjct: 7 EKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQA 60
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 222 EKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQ----PSLQA 271
EK + S+D T ++ + F DL ++ +QQ STL I PSLQA
Sbjct: 7 EKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQA 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,791,121
Number of Sequences: 62578
Number of extensions: 826530
Number of successful extensions: 2429
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1728
Number of HSP's gapped (non-prelim): 355
length of query: 655
length of database: 14,973,337
effective HSP length: 105
effective length of query: 550
effective length of database: 8,402,647
effective search space: 4621455850
effective search space used: 4621455850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)