Query psy11695
Match_columns 190
No_of_seqs 128 out of 1059
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 16:31:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3646|consensus 100.0 5.5E-34 1.2E-38 231.8 10.6 180 1-189 306-486 (486)
2 PF02932 Neur_chan_memb: Neuro 99.9 6.3E-26 1.4E-30 172.4 0.8 172 1-181 66-237 (237)
3 TIGR00860 LIC Cation transport 99.9 5E-23 1.1E-27 174.5 6.8 147 1-182 311-457 (459)
4 KOG3645|consensus 99.7 7.7E-18 1.7E-22 142.5 7.0 137 1-170 311-448 (449)
5 PRK13743 conjugal transfer pro 76.0 9.9 0.00021 26.7 5.2 37 144-181 20-56 (141)
6 KOG2678|consensus 74.7 14 0.00031 28.5 6.2 43 131-182 196-238 (244)
7 PRK14762 membrane protein; Pro 72.5 5.1 0.00011 19.6 2.2 19 163-181 2-20 (27)
8 PF14202 TnpW: Transposon-enco 57.8 14 0.0003 20.0 2.4 28 9-36 8-35 (37)
9 PF11616 EZH2_WD-Binding: WD r 54.8 16 0.00035 18.7 2.2 21 136-156 4-24 (30)
10 PF15586 Imm47: Immunity prote 51.3 17 0.00036 25.2 2.6 35 127-169 78-112 (116)
11 PF06939 DUF1286: Protein of u 48.3 16 0.00034 25.1 2.0 25 18-42 59-83 (114)
12 PF11395 DUF2873: Protein of u 43.1 45 0.00098 18.0 2.9 19 164-182 11-29 (43)
13 cd00928 Cyt_c_Oxidase_VIIa Cyt 43.1 40 0.00086 20.1 3.0 23 160-182 26-48 (55)
14 PF03904 DUF334: Domain of unk 42.2 72 0.0016 24.8 5.0 14 166-179 158-171 (230)
15 PF11628 TCR_zetazeta: T-cell 40.3 58 0.0013 17.1 3.0 16 157-173 4-19 (33)
16 PF06992 Phage_lambda_P: Repli 38.6 32 0.0007 26.9 2.7 38 132-172 14-51 (233)
17 KOG0002|consensus 38.5 19 0.00042 20.5 1.1 9 25-33 18-26 (48)
18 PF05624 LSR: Lipolysis stimul 37.8 8.7 0.00019 21.8 -0.4 10 153-162 1-10 (49)
19 PRK03692 putative UDP-N-acetyl 37.7 20 0.00044 28.2 1.5 28 17-44 193-220 (243)
20 PF11057 Cortexin: Cortexin of 35.9 53 0.0011 20.8 2.8 20 164-183 35-54 (81)
21 KOG4647|consensus 33.1 81 0.0018 24.6 4.0 27 155-181 97-123 (263)
22 PF08253 Leader_Erm: Erm Leade 31.0 54 0.0012 14.8 1.7 14 9-22 3-16 (19)
23 PRK13682 hypothetical protein; 30.3 1.2E+02 0.0026 17.7 3.7 21 158-178 27-47 (51)
24 PF08372 PRT_C: Plant phosphor 29.9 1.8E+02 0.0039 21.3 5.3 49 127-181 64-112 (156)
25 PF14372 DUF4413: Domain of un 28.7 93 0.002 20.7 3.4 19 145-163 45-63 (101)
26 PF10290 DUF2403: Glycine-rich 28.4 29 0.00063 21.4 0.8 10 15-24 46-55 (65)
27 PF03993 DUF349: Domain of Unk 28.3 27 0.00058 21.6 0.7 32 129-160 38-72 (77)
28 PF11815 DUF3336: Domain of un 28.3 92 0.002 22.3 3.5 27 139-165 14-40 (145)
29 KOG2082|consensus 27.8 95 0.0021 29.0 4.1 33 154-186 566-598 (1075)
30 COG4858 Uncharacterized membra 26.3 1.6E+02 0.0035 22.4 4.5 27 146-172 154-180 (226)
31 PF14829 GPAT_N: Glycerol-3-ph 26.2 58 0.0013 20.7 1.8 12 156-167 61-72 (77)
32 PF03908 Sec20: Sec20; InterP 26.1 1.3E+02 0.0028 19.5 3.7 21 160-180 67-87 (92)
33 PF08414 NADPH_Ox: Respiratory 24.4 1.9E+02 0.0041 19.5 4.2 31 127-164 9-39 (100)
34 PF06796 NapE: Periplasmic nit 23.4 1.8E+02 0.0038 17.4 4.0 11 146-156 10-20 (56)
35 PF00832 Ribosomal_L39: Riboso 22.8 36 0.00079 19.1 0.4 9 24-32 12-20 (43)
36 PF12732 YtxH: YtxH-like prote 22.4 90 0.002 19.4 2.3 21 165-185 1-21 (74)
37 PF08788 NHR2: NHR2 domain lik 22.2 1.1E+02 0.0024 18.7 2.5 19 146-164 10-28 (67)
38 TIGR02972 TMAO_torE trimethyla 21.5 1.8E+02 0.0038 16.7 4.0 29 147-177 3-31 (47)
39 PF05484 LRV_FeS: LRV protein 21.5 77 0.0017 19.0 1.7 9 158-166 40-48 (57)
40 PRK13677 hypothetical protein; 21.4 2.3E+02 0.0049 19.8 4.1 40 123-162 72-112 (125)
41 PF03530 SK_channel: Calcium-a 21.3 1.3E+02 0.0029 20.9 3.1 22 146-168 78-99 (119)
42 KOG3670|consensus 20.7 32 0.00068 29.1 -0.1 29 128-157 160-188 (397)
43 COG4537 ComGC Competence prote 20.4 1.2E+02 0.0026 20.5 2.5 24 166-189 16-39 (107)
44 PF07043 DUF1328: Protein of u 20.3 1.6E+02 0.0036 16.1 2.7 17 158-174 22-38 (39)
No 1
>KOG3646|consensus
Probab=100.00 E-value=5.5e-34 Score=231.84 Aligned_cols=180 Identities=44% Similarity=0.688 Sum_probs=113.7
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL 80 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (190)
|++|++|+++||+|||+|||+|.+|.|++|+|++||+|+|++|+|+||......... ..++... ... .....+...
T Consensus 306 m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~ 381 (486)
T KOG3646|consen 306 MFIVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPFILRRTHPS-LRMKELD--RKL-KRGEHKSAE 381 (486)
T ss_pred HHHHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCCccccCCch-hhhhhhh--hhc-ccccccchh
Confidence 688999999999999999999999999999999999999999999999332221110 0111110 000 000000001
Q ss_pred cccCCCCCcccCCCCCCCCCcccccCCCCCCccccC-ccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHH
Q psy11695 81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHA-TTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAM 159 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~ 159 (190)
.++.+..+......... . ..+..........+. .........++..+.+.++.+.++++++++++++++||||+||
T Consensus 382 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~dWkFAAm 458 (486)
T KOG3646|consen 382 ANGLDGFDLFNQRVSQS--L-TPRGRTASLPVISEHVSTATQFILKELHLILKELRAILDRMEEDDKEEALQSDWKFAAM 458 (486)
T ss_pred hhccccccCCCccccCC--C-CCcccccCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHH
Confidence 11111111111000000 0 000000000000000 0000112346788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 160 VVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 160 VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
|+||+||++|+++++++ +|++.+|++++
T Consensus 459 vVDRlCL~~Fs~fiii~--~i~~~~p~l~~ 486 (486)
T KOG3646|consen 459 VVDRLCLLAFSVFIVMC--GILLSAPHLVA 486 (486)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhcCCccCC
Confidence 99999999999999998 88999999874
No 2
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.91 E-value=6.3e-26 Score=172.44 Aligned_cols=172 Identities=28% Similarity=0.470 Sum_probs=75.0
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL 80 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (190)
|+++++++..||+++|+|||++.+++||+|+|+++++++|+++||++|.................... . ... ...
T Consensus 66 ~~v~~~~~~~avv~~~~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~-~~~ 140 (237)
T PF02932_consen 66 MFVFSASLEFAVVVYNIHHRGPRTRPMPPWVRRLFLEKLARLLCMKRPSEKERKPASSQESRSRSSSS---S-RKE-SET 140 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTT-S------------------------------------------------------
T ss_pred chhhhHHHHhhhhhhhhcccccccccccchhHHHHhhhhhhhhhhccccccccccccccccccccccc---c-ccc-ccc
Confidence 45678899999999999999999999999999999999999999998865432211100000000000 0 000 000
Q ss_pred cccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHH
Q psy11695 81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMV 160 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~V 160 (190)
.+.. .....+................. .. ...........+.++++.+++++|++|+++++++++.++||+++|+|
T Consensus 141 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ew~~~A~v 216 (237)
T PF02932_consen 141 DKDP--SQSQSSSNSSSSSQNSPNSRSSS-SS-SSNSSSEQSLSPSLRRILEGVRFIAEHLREQDEEEEIKEEWKFVAMV 216 (237)
T ss_dssp -----------------------------------SS---TTGGG----HHHHHHHHHHHHHHHHHHHHHHHHHHSTSHH
T ss_pred cccc--ccccccccccccccccccccccc-cc-cccccccccccHHHhhhhcccceeecccccccccccccccccccHHH
Confidence 0000 00000000000000000000000 00 00000112234578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy11695 161 VDRMCLIIFTLFTILATVAVL 181 (190)
Q Consensus 161 lDRl~l~if~l~~~~~t~~i~ 181 (190)
+||+|+|+|.+++++++++++
T Consensus 217 iDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 217 IDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhC
Confidence 999999999999999999874
No 3
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.88 E-value=5e-23 Score=174.53 Aligned_cols=147 Identities=22% Similarity=0.310 Sum_probs=101.1
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL 80 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (190)
|++|++|++.|++|+|+|||+|.+|+ |++||+++|+++||++|..+..... ..... ....+. .
T Consensus 311 ~~~v~~sli~tv~V~~~~~~~~~~~~-----r~~~l~~l~~~l~~~~~~~~~~~~~---~~~~~-~~~~~~---~----- 373 (459)
T TIGR00860 311 MAFVFLALLETAFVNYVHHKDPAQGK-----RHLLLERCAWRLCKQEPGEDYRRPA---LDHAS-LSSVEM---R----- 373 (459)
T ss_pred HHHHHHHHHHHHhheeEEccCCCCCc-----eehHHhhchHHhcccCccccccccc---ccccc-cchhcc---c-----
Confidence 57899999999999999999999987 9999999999999999875322100 00000 000000 0
Q ss_pred cccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHH
Q psy11695 81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMV 160 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~V 160 (190)
. ..+.. ... ........... .......++++++.+++++| +|+++++++++.++|||++|+|
T Consensus 374 -~------~~~~~--~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~W~~~a~v 435 (459)
T TIGR00860 374 -A------KDGGR--GLE---SPTERQRLLHS-----PPPAEGDLDLAGILEEVRIA-HRFRKRDESEEVVRDWKFRAKV 435 (459)
T ss_pred -c------ccccc--ccC---CcccccccCCC-----CCccccCHHHHHHHhhhhHH-HHHHhhhhhhcccchhhhccch
Confidence 0 00000 000 00000000000 00011346899999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy11695 161 VDRMCLIIFTLFTILATVAVLC 182 (190)
Q Consensus 161 lDRl~l~if~l~~~~~t~~i~~ 182 (190)
+||+|||+|.++++++|+++++
T Consensus 436 iDr~~~~~f~~~~~~~~~~~~~ 457 (459)
T TIGR00860 436 IDKLSRMAFPLAFLLFNIGYWM 457 (459)
T ss_pred hhHHHHHHHHHHHHHhhhhheE
Confidence 9999999999999999999885
No 4
>KOG3645|consensus
Probab=99.72 E-value=7.7e-18 Score=142.54 Aligned_cols=137 Identities=36% Similarity=0.623 Sum_probs=94.9
Q ss_pred CeEeeehhheeeeEEeeecCCCCCC-CCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhh
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTH-EMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSL 79 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~-~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
|+++++|+++||+++|+|||++.+| +||+|++++|++++|++++|++|+...... +.... ....
T Consensus 311 m~~~~~sv~~tv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~-------- 375 (449)
T KOG3645|consen 311 MVLVTISVVVTVVILNLHHRSPTTHPPMPPWVRRVFLEKLPRLLLMSRPEDELQVS-----RLIVL--GISV-------- 375 (449)
T ss_pred HHHHHHHHHHheeEEeeecccCCCCCCCchHHHHHHHHHHHHHHhcCCcccccccc-----ccccc--cccc--------
Confidence 6789999999999999999999999 899999999999999999999886511100 00000 0000
Q ss_pred hcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHH
Q psy11695 80 LANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAM 159 (190)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~ 159 (190)
.... .... ....... .. .... ......++++++.+.+++|+++++.++..++..+||+++|+
T Consensus 376 --~~~~----~~~~--~~~~~~~-~~----~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~w~~va~ 437 (449)
T KOG3645|consen 376 --KLFK----ITKS--LGSIPVF-SS----ADPL-----LSPELSPELRKAIEGVDFIAEHLKSEDNFQEIREDWKYVAM 437 (449)
T ss_pred --cccc----cccc--ccccccc-cc----cccc-----ccccccHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 0000 0000 0000000 00 0000 00114578889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy11695 160 VVDRMCLIIFT 170 (190)
Q Consensus 160 VlDRl~l~if~ 170 (190)
|+||+|||+|+
T Consensus 438 v~dr~~l~~f~ 448 (449)
T KOG3645|consen 438 VLDRLLLWIFL 448 (449)
T ss_pred HHHHHhhheEe
Confidence 99999999986
No 5
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=76.04 E-value=9.9 Score=26.73 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=28.7
Q ss_pred hhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11695 144 EDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVL 181 (190)
Q Consensus 144 ~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~ 181 (190)
+.+-++.+.|.++...+.||- |++|+.+...|+++.-
T Consensus 20 e~KIrq~~rd~~y~~R~~~~Y-~~LfiVFl~AG~vLw~ 56 (141)
T PRK13743 20 ELKIRQTKRDYDYERRVSDIY-FDLFIVFLTAGIVLWV 56 (141)
T ss_pred hHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHhhHHHHH
Confidence 345667888999999999985 5788888888877643
No 6
>KOG2678|consensus
Probab=74.72 E-value=14 Score=28.55 Aligned_cols=43 Identities=16% Similarity=0.500 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11695 131 LKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLC 182 (190)
Q Consensus 131 ~~~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~ 182 (190)
...+....++++..++... .+|-+++|+ ||.++.++.++.|+-
T Consensus 196 ~~~L~~~Serve~y~ksk~--s~wf~~~mi-------I~v~~sFVsMiliiq 238 (244)
T KOG2678|consen 196 SQGLMDVSERVEKYDKSKL--SYWFYITMI-------IFVILSFVSMILIIQ 238 (244)
T ss_pred HHHHHhhhHHHHHHHHhhh--hHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3455555566655444443 899999987 555555666655543
No 7
>PRK14762 membrane protein; Provisional
Probab=72.52 E-value=5.1 Score=19.61 Aligned_cols=19 Identities=11% Similarity=0.259 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy11695 163 RMCLIIFTLFTILATVAVL 181 (190)
Q Consensus 163 Rl~l~if~l~~~~~t~~i~ 181 (190)
|+.+|+-.+++++|.++++
T Consensus 2 ki~lw~i~iifligllvvt 20 (27)
T PRK14762 2 KIILWAVLIIFLIGLLVVT 20 (27)
T ss_pred eeHHHHHHHHHHHHHHHHH
Confidence 4678888888888877654
No 8
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=57.81 E-value=14 Score=20.05 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=22.0
Q ss_pred heeeeEEeeecCCCCCCCCCHHHHHHHh
Q psy11695 9 VSTILILNYHHRNADTHEMSPWIRLVFL 36 (190)
Q Consensus 9 v~TV~VlN~hhr~p~~~~mp~WvR~l~L 36 (190)
--|++++++||....+-.|..=+.+++.
T Consensus 8 G~Tty~V~~~F~~~s~et~~DKi~rli~ 35 (37)
T PF14202_consen 8 GKTTYVVEVHFSETSKETMQDKIKRLIR 35 (37)
T ss_pred CCEEEEEEEEECCCccccHHHHHHHHHh
Confidence 4589999999988877778777776653
No 9
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=54.76 E-value=16 Score=18.72 Aligned_cols=21 Identities=10% Similarity=0.408 Sum_probs=16.1
Q ss_pred HHHHHhhhhhHHhhchhhHHH
Q psy11695 136 VITDKIQKEDEAAEITNDWKF 156 (190)
Q Consensus 136 ~I~~~~~~~~~~~~~~~eWk~ 156 (190)
|.+++.+-++..+-..+||+.
T Consensus 4 f~sNr~Ki~e~t~iLN~eWk~ 24 (30)
T PF11616_consen 4 FSSNRQKIQERTDILNEEWKK 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHH
Confidence 455666777788888999995
No 10
>PF15586 Imm47: Immunity protein 47
Probab=51.26 E-value=17 Score=25.22 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHH
Q psy11695 127 LTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIF 169 (190)
Q Consensus 127 l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if 169 (190)
..+|.+.++.|.++... ++|..+|..|-|+|.|=|
T Consensus 78 ~~~I~~~i~~~i~~c~~--------~~W~~~~~kLsr~f~WEf 112 (116)
T PF15586_consen 78 YDEIKKTIERIIESCEG--------DDWDEIAEKLSRYFAWEF 112 (116)
T ss_pred HHHHHHHHHHHHHHccC--------CCHHHHHHHHHHheeeec
Confidence 45666666666555532 789999999999998855
No 11
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=48.29 E-value=16 Score=25.09 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=20.5
Q ss_pred ecCCCCCCCCCHHHHHHHhhhcccc
Q psy11695 18 HHRNADTHEMSPWIRLVFLQWMPCI 42 (190)
Q Consensus 18 hhr~p~~~~mp~WvR~l~L~~lp~l 42 (190)
-+|+|.||.+|+-+-+=++.-+|-+
T Consensus 59 ~~RTPlTHT~pRSv~WGli~slp~i 83 (114)
T PF06939_consen 59 PVRTPLTHTLPRSVLWGLIPSLPLI 83 (114)
T ss_pred eecCCCccCcchhhHHHHHHHHHHH
Confidence 4699999999998888887777743
No 12
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=43.13 E-value=45 Score=18.02 Aligned_cols=19 Identities=21% Similarity=0.742 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy11695 164 MCLIIFTLFTILATVAVLC 182 (190)
Q Consensus 164 l~l~if~l~~~~~t~~i~~ 182 (190)
+|+..|+++.++.-+.||+
T Consensus 11 lc~l~~llflv~imliif~ 29 (43)
T PF11395_consen 11 LCFLSFLLFLVIIMLIIFW 29 (43)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554
No 13
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=43.07 E-value=40 Score=20.06 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy11695 160 VVDRMCLIIFTLFTILATVAVLC 182 (190)
Q Consensus 160 VlDRl~l~if~l~~~~~t~~i~~ 182 (190)
+.|++++.+=..++++|+...+.
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~ 48 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLY 48 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHH
Confidence 67999999888888888877653
No 14
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=42.23 E-value=72 Score=24.84 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q psy11695 166 LIIFTLFTILATVA 179 (190)
Q Consensus 166 l~if~l~~~~~t~~ 179 (190)
|.+|.+|.++.|++
T Consensus 158 l~Vf~LF~lvmt~g 171 (230)
T PF03904_consen 158 LFVFMLFALVMTIG 171 (230)
T ss_pred HHHHHHHHHHHHhc
Confidence 33555555555543
No 15
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=40.33 E-value=58 Score=17.13 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11695 157 AAMVVDRMCLIIFTLFT 173 (190)
Q Consensus 157 vA~VlDRl~l~if~l~~ 173 (190)
++.++|-++| +|-++.
T Consensus 4 lCYiLDgiL~-iYgiii 19 (33)
T PF11628_consen 4 LCYILDGILF-IYGIII 19 (33)
T ss_dssp HHHHHHHHHH-HHHHHH
T ss_pred eeeeHHHHHH-HHHHHH
Confidence 6789998876 555543
No 16
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=38.58 E-value=32 Score=26.90 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHH
Q psy11695 132 KELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLF 172 (190)
Q Consensus 132 ~~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~ 172 (190)
+.++.|+.++-++..++...+ .++.++|+||--+-.++
T Consensus 14 ~~~~r~a~~~p~q~~~~~~~~---~~~~~vd~lF~~L~aif 51 (233)
T PF06992_consen 14 EQLRRMANNMPEQYDEKAQVE---QAAKLVDRLFRQLKAIF 51 (233)
T ss_pred HHHHHHHccCCccccccchHH---HHHHHHHHHHHHHHHhC
Confidence 356677777776665544332 57888888886554443
No 17
>KOG0002|consensus
Probab=38.55 E-value=19 Score=20.45 Aligned_cols=9 Identities=33% Similarity=1.055 Sum_probs=6.9
Q ss_pred CCCCHHHHH
Q psy11695 25 HEMSPWIRL 33 (190)
Q Consensus 25 ~~mp~WvR~ 33 (190)
.++|.|+|-
T Consensus 18 r~iP~WiRm 26 (48)
T KOG0002|consen 18 RPIPQWIRM 26 (48)
T ss_pred CCccHHHhh
Confidence 578999873
No 18
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=37.77 E-value=8.7 Score=21.84 Aligned_cols=10 Identities=20% Similarity=0.823 Sum_probs=5.7
Q ss_pred hHHHHHHHHH
Q psy11695 153 DWKFAAMVVD 162 (190)
Q Consensus 153 eWk~vA~VlD 162 (190)
||-+|..|+=
T Consensus 1 ~Wl~V~~iil 10 (49)
T PF05624_consen 1 HWLFVVLIIL 10 (49)
T ss_pred CeEEEeHHHH
Confidence 4666666543
No 19
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=37.67 E-value=20 Score=28.16 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=23.0
Q ss_pred eecCCCCCCCCCHHHHHHHhhhcccccc
Q psy11695 17 YHHRNADTHEMSPWIRLVFLQWMPCILR 44 (190)
Q Consensus 17 ~hhr~p~~~~mp~WvR~l~L~~lp~lL~ 44 (190)
+.+-+....+-|+|+|++=|+||=|++.
T Consensus 193 fD~~aG~~~RAP~w~~~~gLEWlyRl~~ 220 (243)
T PRK03692 193 YDVFTGHVKRAPKIWQNLGLEWLYRLLS 220 (243)
T ss_pred EEEecCCcCcCcHHHHHhChHHHHHhHh
Confidence 4455666788999999999999999773
No 20
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=35.91 E-value=53 Score=20.84 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy11695 164 MCLIIFTLFTILATVAVLCS 183 (190)
Q Consensus 164 l~l~if~l~~~~~t~~i~~~ 183 (190)
.+|++|+.+.++-.+-|++.
T Consensus 35 ~~L~~fL~~liVRCfrIllD 54 (81)
T PF11057_consen 35 GLLCLFLGLLIVRCFRILLD 54 (81)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 46778888888888888876
No 21
>KOG4647|consensus
Probab=33.08 E-value=81 Score=24.55 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11695 155 KFAAMVVDRMCLIIFTLFTILATVAVL 181 (190)
Q Consensus 155 k~vA~VlDRl~l~if~l~~~~~t~~i~ 181 (190)
+++|-.+|-+++++|=+.++.|++-++
T Consensus 97 R~~AE~IDffilf~~K~~Iv~g~~~l~ 123 (263)
T KOG4647|consen 97 RLLAELIDFFILFSFKLAIVGGTLSLL 123 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 468999999999988888888887665
No 22
>PF08253 Leader_Erm: Erm Leader peptide ; InterPro: IPR013204 These short proteins are leader peptides (15-19 amino acids) of erm genes that code for resistance determinants in Staphylococcus aureus [].
Probab=30.98 E-value=54 Score=14.77 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=9.7
Q ss_pred heeeeEEeeecCCC
Q psy11695 9 VSTILILNYHHRNA 22 (190)
Q Consensus 9 v~TV~VlN~hhr~p 22 (190)
.+++||+|-.|-.|
T Consensus 3 ~fSiFVI~~vhYqp 16 (19)
T PF08253_consen 3 MFSIFVINTVHYQP 16 (19)
T ss_pred eEEEEEEEeeccCC
Confidence 46789998665444
No 23
>PRK13682 hypothetical protein; Provisional
Probab=30.26 E-value=1.2e+02 Score=17.74 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11695 158 AMVVDRMCLIIFTLFTILATV 178 (190)
Q Consensus 158 A~VlDRl~l~if~l~~~~~t~ 178 (190)
|.-+-+++|++|+.+.+++-+
T Consensus 27 aa~iAkiLF~iflvl~vvslv 47 (51)
T PRK13682 27 AAGIAKILFFIFLVLFVVSLL 47 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888887766544
No 24
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=29.92 E-value=1.8e+02 Score=21.27 Aligned_cols=49 Identities=16% Similarity=0.399 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11695 127 LTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVL 181 (190)
Q Consensus 127 l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~ 181 (190)
++.+...++.+-+.+..+-|.=+.--.|+ |...=++|.+++++.+++++
T Consensus 64 lr~va~rvQ~vlgd~At~gERl~allsWr------dP~aT~lf~~~clv~avvly 112 (156)
T PF08372_consen 64 LRSVAGRVQNVLGDVATQGERLQALLSWR------DPRATALFVVFCLVAAVVLY 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC------CccHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555675 55555556666665555544
No 25
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=28.66 E-value=93 Score=20.67 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=13.6
Q ss_pred hHHhhchhhHHHHHHHHHH
Q psy11695 145 DEAAEITNDWKFAAMVVDR 163 (190)
Q Consensus 145 ~~~~~~~~eWk~vA~VlDR 163 (190)
++.-+....|-.+|.|||=
T Consensus 45 dKYw~~~~~~l~ia~ILDP 63 (101)
T PF14372_consen 45 DKYWKDCNLLLAIATILDP 63 (101)
T ss_pred HHHHHHhHHHHHHHHHhch
Confidence 4555566777888888883
No 26
>PF10290 DUF2403: Glycine-rich protein domain (DUF2403); InterPro: IPR018807 This domain is found N-terminal to IPR018805 from INTERPRO. The function of this glycine-rich domain is unknown.
Probab=28.43 E-value=29 Score=21.40 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=7.7
Q ss_pred EeeecCCCCC
Q psy11695 15 LNYHHRNADT 24 (190)
Q Consensus 15 lN~hhr~p~~ 24 (190)
|.+|||+|-.
T Consensus 46 lSvhFRGPl~ 55 (65)
T PF10290_consen 46 LSVHFRGPLN 55 (65)
T ss_pred EEEEEeCCcE
Confidence 5689999853
No 27
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=28.33 E-value=27 Score=21.63 Aligned_cols=32 Identities=19% Similarity=0.443 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHh---hhhhHHhhchhhHHHHHHH
Q psy11695 129 LILKELRVITDKI---QKEDEAAEITNDWKFAAMV 160 (190)
Q Consensus 129 ~i~~~l~~I~~~~---~~~~~~~~~~~eWk~vA~V 160 (190)
.+++.++.+.+.. ...+...++.++|+-++.|
T Consensus 38 ~Li~~~~~l~~~~d~~~~~~~~k~l~~~Wk~iG~v 72 (77)
T PF03993_consen 38 ALIEEAEALAESEDWKEAAEEIKELQQEWKEIGPV 72 (77)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCC
Confidence 5555555555544 3445667788889887654
No 28
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM). The family of proteins, which contain these two domains, have been characterised in Saccharomyces cerevisiae (Baker's yeast) as a bifunctional enzyme with triacylglycerol lipase and lysophosphatidic acid acyltransferase or lysophosphatidylethanolamine acyltransferase activity. They are generally involved in triacylglycerol mobilisation and localized to lipid particles [, ].
Probab=28.27 E-value=92 Score=22.34 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=19.8
Q ss_pred HHhhhhhHHhhchhhHHHHHHHHHHHH
Q psy11695 139 DKIQKEDEAAEITNDWKFAAMVVDRMC 165 (190)
Q Consensus 139 ~~~~~~~~~~~~~~eWk~vA~VlDRl~ 165 (190)
+.++.+-+..+.=+||+.+|.-+|.+.
T Consensus 14 ~~l~~~l~~A~sYeEW~~~A~~LD~l~ 40 (145)
T PF11815_consen 14 RRLRRQLRNAESYEEWKEAAQELDELE 40 (145)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 344555556666788999999999884
No 29
>KOG2082|consensus
Probab=27.80 E-value=95 Score=28.98 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy11695 154 WKFAAMVVDRMCLIIFTLFTILATVAVLCSAPH 186 (190)
Q Consensus 154 Wk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~ 186 (190)
=-.+|-++|-|||--|..+++.+++--++.+|+
T Consensus 566 lD~iApilsmFFLMCY~fVNLaCavqtLLrtPn 598 (1075)
T KOG2082|consen 566 LDLIAPILSMFFLMCYLFVNLACAVQTLLRTPN 598 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Confidence 345789999999999999999999999999996
No 30
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=26.29 E-value=1.6e+02 Score=22.36 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=22.7
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHH
Q psy11695 146 EAAEITNDWKFAAMVVDRMCLIIFTLF 172 (190)
Q Consensus 146 ~~~~~~~eWk~vA~VlDRl~l~if~l~ 172 (190)
+..+.-.-||+++-.+--+++|++..+
T Consensus 154 d~sqr~~~~K~~lv~~~sm~lWi~v~i 180 (226)
T COG4858 154 DNSQRPGTWKYLLVAVLSMLLWIAVMI 180 (226)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 556677889999999999999998763
No 31
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=26.17 E-value=58 Score=20.75 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHH
Q psy11695 156 FAAMVVDRMCLI 167 (190)
Q Consensus 156 ~vA~VlDRl~l~ 167 (190)
.+|-++||+|+=
T Consensus 61 nm~~~~Drvlld 72 (77)
T PF14829_consen 61 NMAVALDRVLLD 72 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 468899999873
No 32
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=26.07 E-value=1.3e+02 Score=19.52 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11695 160 VVDRMCLIIFTLFTILATVAV 180 (190)
Q Consensus 160 VlDRl~l~if~l~~~~~t~~i 180 (190)
..||+++|.-++++++..+.|
T Consensus 67 ~~D~~li~~~~~~f~~~v~yI 87 (92)
T PF03908_consen 67 KTDRILIFFAFLFFLLVVLYI 87 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 468887775444443333333
No 33
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=24.41 E-value=1.9e+02 Score=19.46 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHHHHHH
Q psy11695 127 LTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRM 164 (190)
Q Consensus 127 l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl 164 (190)
.+.++++|+||...... .+.|+.|-.-.|.+
T Consensus 9 A~~ALkGLrFIskt~~~-------~~~W~~VE~RFd~L 39 (100)
T PF08414_consen 9 AQRALKGLRFISKTTGG-------ADGWKEVEKRFDKL 39 (100)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHhcccceecCCCC-------ccCHHHHHHHHHHh
Confidence 46788999999976554 33499998888876
No 34
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=23.44 E-value=1.8e+02 Score=17.40 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=7.9
Q ss_pred HHhhchhhHHH
Q psy11695 146 EAAEITNDWKF 156 (190)
Q Consensus 146 ~~~~~~~eWk~ 156 (190)
..++.++||+-
T Consensus 10 ~~~~k~~E~~~ 20 (56)
T PF06796_consen 10 DKSTKRSELKA 20 (56)
T ss_pred ccchhHHHHHH
Confidence 46667888983
No 35
>PF00832 Ribosomal_L39: Ribosomal L39 protein; InterPro: IPR000077 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial large subunit ribosomal proteins can be grouped on the basis of sequence similarities. These proteins are very basic. About 50 residues long, they are the smallest proteins of eukaryotic-type ribosomes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CCJ_2 3CME_2 3OW2_1 1YI2_2 1KD1_3 3CXC_1 3G6E_2 1VQ4_2 3CCU_2 3CC7_2 ....
Probab=22.79 E-value=36 Score=19.11 Aligned_cols=9 Identities=22% Similarity=0.903 Sum_probs=3.9
Q ss_pred CCCCCHHHH
Q psy11695 24 THEMSPWIR 32 (190)
Q Consensus 24 ~~~mp~WvR 32 (190)
.+|+|.|++
T Consensus 12 NrpvP~Wv~ 20 (43)
T PF00832_consen 12 NRPVPQWVR 20 (43)
T ss_dssp TS---HHGH
T ss_pred cCCCCcEEE
Confidence 367888865
No 36
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=22.40 E-value=90 Score=19.35 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q psy11695 165 CLIIFTLFTILATVAVLCSAP 185 (190)
Q Consensus 165 ~l~if~l~~~~~t~~i~~~~p 185 (190)
|++-|++-.++|+++-++.+|
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 456677777778777666667
No 37
>PF08788 NHR2: NHR2 domain like; InterPro: IPR014896 Transcriptional activation and repression are required for control of cell proliferation and differentiation during embryonic development and homeostasis in the adult organism. Perturbations of these processes can lead to the development of cancer []. The Eight-Twenty-One (ETO) gene product is able to form complexes with corepressors and deacetylases, such as nuclear receptor corepressor (N-CoR), which repress transcription when recruited by transcription factors []. The ETO gene derives its name from its association with many cases of acute myelogenous leukaemia (AML), in which a reciprocal translocation, t(8;21), brings together a large portion of the ETO gene from chromosome eight and part of the AML1 gene from chromosome 21. The human ETO gene family currently comprises three major subfamilies: ETO/myeloid transforming gene on chromosome 8 (MTG8); myeloid transforming gene related protein-1 (MTGR1) and myeloid transforming gene on chromosome 16 (MTG16). ETO proteins are composed of four evolutionarily conserved domains termed nervy homology regions (NHR) 1-4. NHR1 is thought to stabilise the formation of high molecular weight complexes, but is not directly responsible for repressor activity. NHR2 and its flanking sequence comprise the core repressor domain, which mediates 50% of the wild type repressor activity. Furthermore, there is evidence that the amphipathic helical structure of NHR2 promotes the formation of ETO/AML1 homodimers []. NHR3 and NHR4 have been shown to act in concert to bind N-CoR. NHR4 contains two zinc finger motifs, which are thought to play a role in protein interactions rather than DNA binding []. This entry represents the NHR2 (Nervy homology 2) domain found in ETO proteins. It mediates oligomerisation and protein-protein interactions, forming an alpha-helical tetramer []. ; PDB: 1WQ6_A.
Probab=22.21 E-value=1.1e+02 Score=18.70 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=13.4
Q ss_pred HHhhchhhHHHHHHHHHHH
Q psy11695 146 EAAEITNDWKFAAMVVDRM 164 (190)
Q Consensus 146 ~~~~~~~eWk~vA~VlDRl 164 (190)
.+.+..+|||.+-.+|..+
T Consensus 10 t~~~~~deWkh~~~mLnCI 28 (67)
T PF08788_consen 10 TEREWADEWKHLDHMLNCI 28 (67)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHhcCHHHHHHHH
Confidence 4567789999977766554
No 38
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=21.51 E-value=1.8e+02 Score=16.71 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=13.9
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11695 147 AAEITNDWKFAAMVVDRMCLIIFTLFTILAT 177 (190)
Q Consensus 147 ~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t 177 (190)
+++.++||+- ..+=-++++-.+.+.+++.
T Consensus 3 ~~~k~~El~~--flfl~v~l~PiLsV~~Vg~ 31 (47)
T TIGR02972 3 ESKRSNELKA--LGFIIVVLFPILSVAGIGG 31 (47)
T ss_pred cchhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4556678883 3222333334444444444
No 39
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=21.48 E-value=77 Score=18.99 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q psy11695 158 AMVVDRMCL 166 (190)
Q Consensus 158 A~VlDRl~l 166 (190)
|.-|||||-
T Consensus 40 aRrIdRFF~ 48 (57)
T PF05484_consen 40 ARRIDRFFR 48 (57)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555543
No 40
>PRK13677 hypothetical protein; Provisional
Probab=21.41 E-value=2.3e+02 Score=19.77 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHHHHHHhh-hhhHHhhchhhHHHHHHHHH
Q psy11695 123 PHRELTLILKELRVITDKIQ-KEDEAAEITNDWKFAAMVVD 162 (190)
Q Consensus 123 ~~~~l~~i~~~l~~I~~~~~-~~~~~~~~~~eWk~vA~VlD 162 (190)
.++.+..+++++..|+.+.+ +.|-.+++-+|-+..-.|+-
T Consensus 72 i~~~l~~vidELd~i~~~~~~e~d~K~kiL~dLrHLE~Vv~ 112 (125)
T PRK13677 72 ISPNLRYVIDELDQICQRDREEVDLKRKILDDLRHLESVVA 112 (125)
T ss_pred ccHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999876 45667778888888777764
No 41
>PF03530 SK_channel: Calcium-activated SK potassium channel; InterPro: IPR011996 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. SK channels are thought to play an important role in the functioning of all excitable tissues. To date, 3 subtypes (designated SK1-SK3) have been cloned, each of which possesses a different tissue expression profile: SK1 channels are expressed in the heart; SK2 channels are found in the adrenal gland; and SK3 channels are known to be present in skeletal muscle []. SK channels have a single-channel conductance of 2-20 pS and are activated by rises in cytosolic calcium with half maximal activation in the 400-800 nM range [, ]. Unlike BK channels, they are voltage insensitive and unaffected by low concentrations of TEA, charybdotoxin, or iberiotoxin. However, they are potently blocked by the bee venom apamin [, ], tubocurarine, and quaternary salts of bicuculline [, ]. A new series of compounds that block SK channels include dequalinium Synonym(s): SK Channel This entry represents a conserved region, found in proteins of SK channels family.
Probab=21.32 E-value=1.3e+02 Score=20.88 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=17.7
Q ss_pred HHhhchhhHHHHHHHHHHHHHHH
Q psy11695 146 EAAEITNDWKFAAMVVDRMCLII 168 (190)
Q Consensus 146 ~~~~~~~eWk~vA~VlDRl~l~i 168 (190)
.-+...+||+ +|+..+|++...
T Consensus 78 ~~dn~~~dWr-ia~t~~r~~~i~ 99 (119)
T PF03530_consen 78 MVDNGADDWR-IAMTWERILQIA 99 (119)
T ss_pred HHHcCCchHH-HHHHHHHHHHHH
Confidence 4556678999 999999998764
No 42
>KOG3670|consensus
Probab=20.74 E-value=32 Score=29.08 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhchhhHHHH
Q psy11695 128 TLILKELRVITDKIQKEDEAAEITNDWKFA 157 (190)
Q Consensus 128 ~~i~~~l~~I~~~~~~~~~~~~~~~eWk~v 157 (190)
+.+.+.-+.+.+++++..+-+ .++|||.|
T Consensus 160 ~Dlp~QAr~Lv~rik~~~~i~-~~~dWKLi 188 (397)
T KOG3670|consen 160 EDLPDQARDLVSRIKKDKEIN-MKNDWKLI 188 (397)
T ss_pred hhhHHHHHHHHHHHHhccCcc-cccceEEE
Confidence 455666667777777665555 89999965
No 43
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=20.39 E-value=1.2e+02 Score=20.52 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 166 LIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 166 l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
|.=.+++.++.++++++-+|++.+
T Consensus 16 LvEMLiVLlIISiLlLl~iPNltK 39 (107)
T COG4537 16 LVEMLIVLLIISILLLLFIPNLTK 39 (107)
T ss_pred HHHHHHHHHHHHHHHHHHccchhh
Confidence 334667777788888888898753
No 44
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=20.28 E-value=1.6e+02 Score=16.12 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11695 158 AMVVDRMCLIIFTLFTI 174 (190)
Q Consensus 158 A~VlDRl~l~if~l~~~ 174 (190)
|.-+-|++|++|+.+.+
T Consensus 22 a~~iAkiLf~iflvl~v 38 (39)
T PF07043_consen 22 AAGIAKILFFIFLVLFV 38 (39)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567788888877654
Done!