Query psy11695
Match_columns 190
No_of_seqs 128 out of 1059
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 16:32:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oed_B Acetylcholine receptor 100.0 1.3E-38 4.3E-43 247.7 -3.0 175 1-189 72-247 (250)
2 1oed_C Acetylcholine receptor 100.0 2.8E-38 9.7E-43 247.0 -5.8 179 1-189 72-257 (260)
3 4aq5_E Acetylcholine receptor 100.0 3.1E-37 1.1E-41 261.6 -0.2 179 1-187 290-472 (488)
4 1oed_E Acetylcholine receptor 100.0 4.9E-38 1.7E-42 245.7 -5.1 179 1-189 73-257 (260)
5 4aq5_C Acetylcholine receptor 100.0 1.3E-36 4.3E-41 259.6 -5.1 178 1-188 317-501 (522)
6 1oed_A Acetylcholine receptor 100.0 6.4E-36 2.2E-40 229.4 -4.3 144 1-183 72-218 (227)
7 4aq5_B Acetylcholine receptor 100.0 3.7E-35 1.3E-39 249.2 -2.8 172 1-187 312-485 (493)
8 4aq5_A Acetylcholine receptor 100.0 1.6E-34 5.4E-39 243.4 -4.4 147 1-186 306-455 (461)
9 2bg9_B Acetylcholine receptor 99.7 6.5E-19 2.2E-23 144.8 -0.3 57 133-189 308-364 (370)
10 2bg9_C Acetylcholine receptor 99.7 8.3E-19 2.8E-23 144.2 -0.6 57 133-189 310-366 (369)
11 2bg9_E Acetylcholine receptor 99.7 1.9E-18 6.5E-23 142.1 0.5 57 133-189 312-368 (370)
12 2bg9_A Acetylcholine receptor 99.5 1.8E-16 6E-21 130.3 -2.1 52 132-183 310-361 (370)
13 2ksr_A Neuronal acetylcholine 99.2 1.5E-12 5.2E-17 94.7 -0.4 34 155-189 130-163 (164)
14 2lly_A Neuronal acetylcholine 98.1 8.8E-08 3E-12 67.6 -2.9 41 1-41 78-119 (137)
15 2lly_A Neuronal acetylcholine 97.9 5.8E-06 2E-10 58.2 3.4 31 158-189 106-136 (137)
16 3rhw_A Avermectin-sensitive gl 96.9 9E-06 3.1E-10 65.9 -7.4 45 1-45 284-329 (347)
17 2ljb_A M2 protein, BM2 protein 67.1 4 0.00014 20.7 2.0 16 152-167 17-32 (35)
18 2kke_A Uncharacterized protein 41.7 11 0.00038 20.3 1.2 20 20-39 31-50 (53)
19 2hac_A T-cell surface glycopro 38.7 39 0.0013 17.0 3.0 16 157-173 4-19 (33)
20 2kih_A Matrix protein 2; S31N, 32.5 22 0.00074 18.7 1.4 13 154-166 19-31 (43)
21 1vq8_2 50S ribosomal protein L 27.9 25 0.00084 19.7 1.2 10 24-33 19-28 (50)
22 3r46_A Coiled coil helix L24D; 26.5 65 0.0022 15.7 3.4 18 126-143 3-20 (35)
23 1wlq_A Geminin; coiled-coil; 2 25.6 1.2E+02 0.0042 18.7 4.7 20 145-164 62-81 (83)
24 3j21_f 50S ribosomal protein L 23.8 33 0.0011 19.2 1.2 11 24-34 20-30 (51)
25 3u5e_l L46, YL40, 60S ribosoma 21.0 25 0.00085 19.8 0.3 9 24-32 20-28 (51)
No 1
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=100.00 E-value=1.3e-38 Score=247.70 Aligned_cols=175 Identities=24% Similarity=0.424 Sum_probs=50.8
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhh-hhhccchhh
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELE-LKERSSKSL 79 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (190)
|++|++|++.||+|+|+|||+|.+|+||+|+|++||+++|++|||++|+++...... ...+.. ...+ ...+.+...
T Consensus 72 m~~v~~sl~~tv~Vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~p~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~ 148 (250)
T 1oed_B 72 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSK-PTIISR--ANDEYFIRKPAGDF 148 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEecCCCcccccccc-cccccc--ccchhcccCCcccc
Confidence 578899999999999999999999999999999999999999999999753211000 000000 0000 000000000
Q ss_pred hcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHH
Q psy11695 80 LANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAM 159 (190)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~ 159 (190)
+ ....+..+.. +.+ ..+.......... .......++++++++++++|++|++++|+++++++|||||||
T Consensus 149 --~-~~~~~~~~~~--~~~-----~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAm 217 (250)
T 1oed_B 149 --V-CPVDNARVAV--QPE-----RLFSEMKWHLNGL-TQPVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAM 217 (250)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred --C-CCCCcccccc--ccC-----CCCcccccccccc-ccccccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 0 0000000000 000 0000000000000 000123468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 160 VVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 160 VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
|+||+|||+|++++++||++||+++|+++.
T Consensus 218 VlDRlfL~iF~i~~i~gT~~I~l~ap~~~~ 247 (250)
T 1oed_B 218 VADRLFLYVFFVICSIGTFSIFLDASHNVP 247 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 999999999999999999999999999875
No 2
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=100.00 E-value=2.8e-38 Score=247.02 Aligned_cols=179 Identities=21% Similarity=0.344 Sum_probs=50.6
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCcc--chhHHhhhhhh---hhhhh--hhh
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKT--SLTEATRKALK---LKELE--LKE 73 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~--~~~~~~~~~~~---~~~~~--~~~ 73 (190)
|++|++|++.||+|+|+|||+|.+|+||+|+|++||+++|++|||++|++.... ......+.... ....+ ...
T Consensus 72 m~~v~~s~~~tv~vl~~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (260)
T 1oed_C 72 MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQEYFNI 151 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHheeeeeccCCCCCCccHHHHHHHHHhhhHHhEecCCcccccccccccccccccccccccccchhhccc
Confidence 578999999999999999999999999999999999999999999998754110 00000000000 00000 000
Q ss_pred ccchhhhcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhh
Q psy11695 74 RSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITND 153 (190)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~e 153 (190)
. +++.... + .....++.... . +.+.+......... ......++++++++++++|++|++++|+++++++|
T Consensus 152 ~-~~~~~~~--~-~~~~~~~~~~~--~---~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~d 221 (260)
T 1oed_C 152 K-SRSELMF--E-KQSERHGLVPR--V---TPRIGFGNNNENIA-ASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGN 221 (260)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-ccccccc--c-ccccCCCcccc--c---ccCCCCCccccccc-cccccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0 0000000 0 00000000000 0 00000000000000 00123468999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 154 WKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 154 Wk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
|||||||+||+|||+|++++++||++||+++|+++.
T Consensus 222 Wk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~ 257 (260)
T 1oed_C 222 WNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNHP 257 (260)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999999999999999999999999999998864
No 3
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=3.1e-37 Score=261.63 Aligned_cols=179 Identities=20% Similarity=0.330 Sum_probs=81.2
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhh---hhhhhhhhccch
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALK---LKELELKERSSK 77 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (190)
|++|++|++.||+|+|+|||+|.+|+||+|+|++||++||++|||++|+.+.........+.... ....+.....+.
T Consensus 290 m~lv~~Sll~tv~Vlnl~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (488)
T 4aq5_E 290 MFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPEKPQPRRRSSFGIMIKAEEYILKKPR 369 (488)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSTTTCC------------------------------------------------------
T ss_pred HHHHHHHHHHHhhEEEEEccCCCCCcCChhHhhhhHhhCcceeEecCCcccccccccccccccccccccccccccccCCc
Confidence 67899999999999999999999999999999999999999999999865321110000000000 000000000000
Q ss_pred hhhcccCCCCCcccCCCCCCCCCcccccCCCC-CCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHH
Q psy11695 78 SLLANVLDIDDDFRHNTLQSSSHTFLRHDDSG-GGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKF 156 (190)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~ 156 (190)
+.. .+. ....+++.... . ...++. .+.............+++++++++++||++|++++|+++++++||||
T Consensus 370 ~~~--~~~-~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~ 441 (488)
T 4aq5_E 370 SEL--MFE-EQKDRHGLKRV----N-KMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVL 441 (488)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccc--ccc-cccccCccccc----c-cccCccccCCCccccccccccCHHHHHHHHHHHHHHHHHhhhhHHhhhhhcceE
Confidence 000 000 00000000000 0 000000 00000000011124578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy11695 157 AAMVVDRMCLIIFTLFTILATVAVLCSAPHI 187 (190)
Q Consensus 157 vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~ 187 (190)
||||+||+|||+|++++++||++||+++|+.
T Consensus 442 va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~ 472 (488)
T 4aq5_E 442 IGKVIDKACFWIALLLFSLGTLAIFLTGHLN 472 (488)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999987754
No 4
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=100.00 E-value=4.9e-38 Score=245.65 Aligned_cols=179 Identities=21% Similarity=0.324 Sum_probs=50.4
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccC-CCCCCCccchhHHhhhh-hh---hhhhhhhhcc
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMS-RPSEEDKTSLTEATRKA-LK---LKELELKERS 75 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~-~p~~~~~~~~~~~~~~~-~~---~~~~~~~~~~ 75 (190)
|++|++|++.||+|+|+|||+|.+|+||+|+|++||+++|++|||+ +|++..+... ..+.. .. ....+.....
T Consensus 73 m~~v~~sl~~tv~vln~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~rp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 150 (260)
T 1oed_E 73 MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKP--QPRRRSSFGIMIKAEEYILKK 150 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEeccCCcccccccc--ccccccccccccccchhhccC
Confidence 5788999999999999999999999999999999999999999999 9865311000 00000 00 0000000000
Q ss_pred chhhhcccCCCCCcccCCCCCCCCCcccccCCCCCCcc-ccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhH
Q psy11695 76 SKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTI-LHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDW 154 (190)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eW 154 (190)
+++... .+ .....++.... .+...+..++. ...........++++++++++++|++|++++|+++++++||
T Consensus 151 ~~~~~~--~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dW 222 (260)
T 1oed_E 151 PRSELM--FE-EQKDRHGLKRV-----NKMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENW 222 (260)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc--cc-cCCcccccccc-----cccccCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 000000 00 00000000000 00000000000 00000011234689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 155 KFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 155 k~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
||||||+||+|||+|++++++||++||+++|+++.
T Consensus 223 k~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~ 257 (260)
T 1oed_E 223 VLIGKVIDKACFWIALLLFSIGTLAIFLTGHFNQV 257 (260)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999999999999999999998864
No 5
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=1.3e-36 Score=259.63 Aligned_cols=178 Identities=23% Similarity=0.326 Sum_probs=81.8
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccC-CCCCCCccchhHH-hhhhhh----hhhhhhhhc
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMS-RPSEEDKTSLTEA-TRKALK----LKELELKER 74 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~-~p~~~~~~~~~~~-~~~~~~----~~~~~~~~~ 74 (190)
|++|++|++.||+|+|+|||+|.+|+||+|+|++||++||++|||+ +|+.+........ .+.... ....+....
T Consensus 317 m~lv~lSll~tviVlnl~~r~~~~~~mp~wvr~~fl~~l~~~l~m~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (522)
T 4aq5_C 317 MSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIEQPDWQNDLKLRRSSSVGYISKAQEYFNI 396 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHheEEEEEccCCCCCCCChHHHHHHHHhCchheEEecCCCcccccccccccccccccccccccccccccc
Confidence 6789999999999999999999999999999999999999999999 9865311000000 000000 000000000
Q ss_pred cchhhhcccCCCCCcccCCCCCCCCCcccccCCCC-CCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhh
Q psy11695 75 SSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSG-GGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITND 153 (190)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~e 153 (190)
.+.+.. .+. ....+++.. .+...+. .+.............+++++++++++||++|++++|+++++++|
T Consensus 397 ~~~~~~--~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~d 466 (522)
T 4aq5_C 397 KSRSEL--MFE-KQSERHGLV-------PRVTPRIGFGNNNENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGN 466 (522)
T ss_dssp -------------------------------------------------------CCTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcccc--ccc-cccccCccc-------ccccCccccCCcccccccccccCHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence 000000 000 000000000 0000000 00000000011123568899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q psy11695 154 WKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHII 188 (190)
Q Consensus 154 Wk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~ 188 (190)
|||||||+||+|||+|++++++||++||+++|+..
T Consensus 467 Wk~va~V~DRl~l~~f~~~~~~gt~~i~~~~~~~~ 501 (522)
T 4aq5_C 467 WNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNR 501 (522)
T ss_dssp TTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred eeEeeeeHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999999999999999988654
No 6
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=100.00 E-value=6.4e-36 Score=229.43 Aligned_cols=144 Identities=26% Similarity=0.534 Sum_probs=45.3
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccC---CCCCCCccchhHHhhhhhhhhhhhhhhccch
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMS---RPSEEDKTSLTEATRKALKLKELELKERSSK 77 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
|++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|||+ +|+.+... +... .. +... .
T Consensus 72 m~~v~~sl~~tv~vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~~~rp~~~~~~------~~~~-~~--~~~~-~-- 139 (227)
T 1oed_A 72 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQE------NKIF-AD--DIDI-S-- 139 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHhccHhheeccccCCcccccc------cccc-cc--cccc-c--
Confidence 5788999999999999999999999999999999999999999996 66432110 0000 00 0000 0
Q ss_pred hhhcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHH
Q psy11695 78 SLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFA 157 (190)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~v 157 (190)
.. .+... .... .+ + ......++++++++++++|++|++++|++++.++|||+|
T Consensus 140 -----------~~----~~~~~--~~~~-~~-----~----~~~~~~~~l~~~~~~v~~I~~~~~~~~~~~~~~~dWk~v 192 (227)
T 1oed_A 140 -----------DI----SGKQV--TGEV-IF-----Q----TPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYV 192 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------cc----CCCCC--CCCC-Cc-----c----ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 00 00000 0000 00 0 001123578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11695 158 AMVVDRMCLIIFTLFTILATVAVLCS 183 (190)
Q Consensus 158 A~VlDRl~l~if~l~~~~~t~~i~~~ 183 (190)
|+|+||+|||+|++++++||++||++
T Consensus 193 A~VlDRl~l~iF~~~~i~gT~~i~~~ 218 (227)
T 1oed_A 193 AMVIDHILLCVFMLICIIGTVSVFAG 218 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987
No 7
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.98 E-value=3.7e-35 Score=249.16 Aligned_cols=172 Identities=24% Similarity=0.441 Sum_probs=80.9
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL 80 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (190)
|++|++|++.||+|+|+|||+|.+|+||+|+|++||++||++|||++|+........ . ........+.......+..
T Consensus 312 m~~v~lsll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 388 (493)
T 4aq5_B 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSK--P-TIISRANDEYFIRKPAGDF 388 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHhheeeeccCCCCCcCCHHHHHHHHHhCcceEEecCCccccccccc--c-cccccccccccccCCCccc
Confidence 578899999999999999999999999999999999999999999998653210000 0 0000000000000000000
Q ss_pred c-ccCCC-CCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHH
Q psy11695 81 A-NVLDI-DDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAA 158 (190)
Q Consensus 81 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA 158 (190)
. ..... +...+++..+ ...+. . .+.. .. ....++++++++++++|++|++++++++++++||||||
T Consensus 389 ~~~~~~~~~~~~~~~~~~----~~~~~--~-~~~~----~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va 456 (493)
T 4aq5_B 389 VCPVDNARVAVQPERLFS----EMKWH--L-NGLT----QP-VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVA 456 (493)
T ss_dssp --------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred cccccccccccccccccc----ccccc--c-cCcc----cc-cccCHHHHHHHHHHHHHHHHHHhhhHhhhhhcceEEEE
Confidence 0 00000 0000000000 00000 0 0000 01 13457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy11695 159 MVVDRMCLIIFTLFTILATVAVLCSAPHI 187 (190)
Q Consensus 159 ~VlDRl~l~if~l~~~~~t~~i~~~~p~~ 187 (190)
||+||+|||+|++++++||++||+++|+.
T Consensus 457 ~V~DR~~l~~f~~~~~~gt~~i~~~~~~~ 485 (493)
T 4aq5_B 457 MVADRLFLYIFITMCSIGTFSIFLDASHN 485 (493)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred EehhHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999987754
No 8
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.97 E-value=1.6e-34 Score=243.41 Aligned_cols=147 Identities=24% Similarity=0.483 Sum_probs=80.1
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccc---cCCCCCCCccchhHHhhhhhhhhhhhhhhccch
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILR---MSRPSEEDKTSLTEATRKALKLKELELKERSSK 77 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~---m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
|++|++|++.||+|+|+|||+|.+|+||+|+|++||+++|++|| |++|+.+.... +.. ..+.. .
T Consensus 306 m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~~~~~~~p~~~~~~~-----~~~----~~~~~--~-- 372 (461)
T 4aq5_A 306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASKEKQEN-----KIF----ADDID--I-- 372 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTTC-------------------------------------------------------
T ss_pred HHHHHHHHHHHhhheeeeccCCCCCCCCHHHHHHHHHhhHHHhhhhhcCCCCcccccc-----cCC----ccccC--c--
Confidence 57899999999999999999999999999999999999999999 99986431100 000 00000 0
Q ss_pred hhhcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHH
Q psy11695 78 SLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFA 157 (190)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~v 157 (190)
+...+.... .. .... ......++++++++++++|++|+++++++++.++|||||
T Consensus 373 --------------~~~~~~~~~--~~-----~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~v 426 (461)
T 4aq5_A 373 --------------SDISGKQVT--GE-----VIFQ-----TPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYV 426 (461)
T ss_dssp ---------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred --------------ccccCCCCC--Cc-----cccc-----cccccCHHHHHHHHHHHHHHHHHHhhHHHHhhhhhheee
Confidence 000000000 00 0000 001234688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy11695 158 AMVVDRMCLIIFTLFTILATVAVLCSAPH 186 (190)
Q Consensus 158 A~VlDRl~l~if~l~~~~~t~~i~~~~p~ 186 (190)
|+|+||+|||+|++++++||++||++++.
T Consensus 427 a~v~Dr~~l~~f~~~~~~gt~~i~~~~~~ 455 (461)
T 4aq5_A 427 AMVIDHILLCVFMLICIIGTVSVFAGRLI 455 (461)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998754
No 9
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.71 E-value=6.5e-19 Score=144.82 Aligned_cols=57 Identities=26% Similarity=0.603 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 133 ELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 133 ~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
++++|++++++++++++.++||+++|+|+||+|||+|++++++||++||+++|++++
T Consensus 308 ~~~~i~~~~~~~~~~~~~~~~W~~~a~v~Dr~~~~~f~~~~~~~t~~i~~~~~~~~~ 364 (370)
T 2bg9_B 308 AIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVP 364 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 456778888899999999999999999999999999999999999999999998764
No 10
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.70 E-value=8.3e-19 Score=144.15 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 133 ELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 133 ~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
++++|++++++++++++.++||+++|+|+||+|||+|++++++||++||+++|+++.
T Consensus 310 ~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~~~~i~~~~~~~~~ 366 (369)
T 2bg9_C 310 STNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRP 366 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 445677888889999999999999999999999999999999999999999998875
No 11
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.69 E-value=1.9e-18 Score=142.09 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 133 ELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 133 ~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
++++|++++++++++++.++||+++|+|+||+|||+|.+++++||++||+++|++++
T Consensus 312 ~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~~~~~~~ 368 (370)
T 2bg9_E 312 ACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQV 368 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 456677888888899999999999999999999999999999999999999998765
No 12
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.55 E-value=1.8e-16 Score=130.34 Aligned_cols=52 Identities=29% Similarity=0.711 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11695 132 KELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCS 183 (190)
Q Consensus 132 ~~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~~ 183 (190)
+++++|+++++++++.++.++||+++|+|+||+|||+|.+++++||++||++
T Consensus 310 ~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~ 361 (370)
T 2bg9_A 310 EGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG 361 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888899999999999999999999999999999999999999999975
No 13
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.19 E-value=1.5e-12 Score=94.73 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 155 KFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 155 k~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
|++|+|+||+|||+|.+++++||++|+++ |+++.
T Consensus 130 k~~a~v~Dr~~l~~f~~~~~~~t~~i~~~-p~~~~ 163 (164)
T 2ksr_A 130 GYVAMVIDRLFLWIFVFVCVFGTIGMFLQ-PLFQN 163 (164)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHheec-ccccc
Confidence 99999999999999999999999999999 88763
No 14
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=98.13 E-value=8.8e-08 Score=67.62 Aligned_cols=41 Identities=37% Similarity=0.515 Sum_probs=35.9
Q ss_pred CeEeeehhheeeeEEeeecCCCCCCCC-CHHHHHHHhhhccc
Q psy11695 1 MFMVASSVVSTILILNYHHRNADTHEM-SPWIRLVFLQWMPC 41 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~~~m-p~WvR~l~L~~lp~ 41 (190)
|++|++|++.|++|+|+|||+|++|+| |.|++++||-..+-
T Consensus 78 ~~~v~~sl~~tv~V~~~~~r~~~~~~mp~~~~dr~~lwif~~ 119 (137)
T 2lly_A 78 MIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFII 119 (137)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCSSCCSSCSSSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHhcCCccCccchHHHHHHHHHHHHH
Confidence 467889999999999999999999999 58999999955444
No 15
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=97.93 E-value=5.8e-06 Score=58.23 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695 158 AMVVDRMCLIIFTLFTILATVAVLCSAPHIIV 189 (190)
Q Consensus 158 A~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~ 189 (190)
++|+||+|+|+|.+++++||++|+++ |++.+
T Consensus 106 ~~~~dr~~lwif~~~~~~gt~~i~~~-p~~~~ 136 (137)
T 2lly_A 106 GGGIDRIFLWMFIIVCLLGTVGLFLP-PWLAG 136 (137)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHCC-STTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhhhheec-ccccC
Confidence 48999999999999999999999999 98764
No 16
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=96.87 E-value=9e-06 Score=65.89 Aligned_cols=45 Identities=11% Similarity=0.258 Sum_probs=41.0
Q ss_pred CeEeeehhheeeeEEeeecCCCCC-CCCCHHHHHHHhhhccccccc
Q psy11695 1 MFMVASSVVSTILILNYHHRNADT-HEMSPWIRLVFLQWMPCILRM 45 (190)
Q Consensus 1 MvlVtlSiv~TV~VlN~hhr~p~~-~~mp~WvR~l~L~~lp~lL~m 45 (190)
|++|.+|++.+++|.++++|++.+ ++||+|++++++.++|.++|+
T Consensus 284 ~~~v~~slle~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~i 329 (347)
T 3rhw_A 284 MTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFV 329 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998766 789999999999999999987
No 17
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=67.09 E-value=4 Score=20.72 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHH
Q psy11695 152 NDWKFAAMVVDRMCLI 167 (190)
Q Consensus 152 ~eWk~vA~VlDRl~l~ 167 (190)
.-|.+++-++||+||.
T Consensus 17 giLHlilWildrLff~ 32 (35)
T 2ljb_A 17 GILHFIAWTIGHLNQI 32 (35)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhhhhHhh
Confidence 3466778889999985
No 18
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=41.72 E-value=11 Score=20.26 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.4
Q ss_pred CCCCCCCCCHHHHHHHhhhc
Q psy11695 20 RNADTHEMSPWIRLVFLQWM 39 (190)
Q Consensus 20 r~p~~~~mp~WvR~l~L~~l 39 (190)
|-|....|..++|+++|+.|
T Consensus 31 rvpantsmsayirriilnhl 50 (53)
T 2kke_A 31 RVPANTSMSAYIRRIILNHL 50 (53)
T ss_dssp TCCSSSCHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHhhh
Confidence 77888889999999998765
No 19
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=38.69 E-value=39 Score=17.01 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11695 157 AAMVVDRMCLIIFTLFT 173 (190)
Q Consensus 157 vA~VlDRl~l~if~l~~ 173 (190)
++.++|-++| +|-++.
T Consensus 4 lCYiLDgiL~-iYgii~ 19 (33)
T 2hac_A 4 LCYLLDGILF-IYGVIL 19 (33)
T ss_dssp HHHHHHHHHH-HHHHHH
T ss_pred eEeehHHHHH-HHHHHH
Confidence 6788998866 455443
No 20
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=32.51 E-value=22 Score=18.71 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q psy11695 154 WKFAAMVVDRMCL 166 (190)
Q Consensus 154 Wk~vA~VlDRl~l 166 (190)
+..+--++||+||
T Consensus 19 lHLiLwildRlff 31 (43)
T 2kih_A 19 LHLILWILDRLFF 31 (43)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4445557899986
No 21
>1vq8_2 50S ribosomal protein L39E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.137.1.1 PDB: 1vq4_2* 1vq5_2* 1vq6_2* 1vq7_2* 1s72_2* 1vq9_2* 1vqk_2* 1vql_2* 1vqm_2* 1vqn_2* 1vqo_2* 1vqp_2* 1yhq_2* 1yi2_2* 1yij_2* 1yit_2* 1yj9_2* 1yjn_2* 1yjw_2* 2otj_2* ...
Probab=27.95 E-value=25 Score=19.67 Aligned_cols=10 Identities=20% Similarity=0.753 Sum_probs=7.5
Q ss_pred CCCCCHHHHH
Q psy11695 24 THEMSPWIRL 33 (190)
Q Consensus 24 ~~~mp~WvR~ 33 (190)
.+++|.|++.
T Consensus 19 NrpiP~Wv~~ 28 (50)
T 1vq8_2 19 NSRVPAWVML 28 (50)
T ss_dssp SSCCCHHHHH
T ss_pred cCCCCceEEE
Confidence 4689999864
No 22
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=26.47 E-value=65 Score=15.75 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy11695 126 ELTLILKELRVITDKIQK 143 (190)
Q Consensus 126 ~l~~i~~~l~~I~~~~~~ 143 (190)
+++.|.++++.|++.++.
T Consensus 3 elkaiaqelkaiakelka 20 (35)
T 3r46_A 3 ELKAIAQELKAIAKELKA 20 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 466677777777766554
No 23
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.62 E-value=1.2e+02 Score=18.70 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=14.2
Q ss_pred hHHhhchhhHHHHHHHHHHH
Q psy11695 145 DEAAEITNDWKFAAMVVDRM 164 (190)
Q Consensus 145 ~~~~~~~~eWk~vA~VlDRl 164 (190)
++-.+..+.=+++|-|++||
T Consensus 62 ~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 62 KDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445566668999999986
No 24
>3j21_f 50S ribosomal protein L39E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.79 E-value=33 Score=19.24 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=8.0
Q ss_pred CCCCCHHHHHH
Q psy11695 24 THEMSPWIRLV 34 (190)
Q Consensus 24 ~~~mp~WvR~l 34 (190)
.+++|.|++.-
T Consensus 20 Nr~iP~Wv~~K 30 (51)
T 3j21_f 20 NRRVPVWVIVK 30 (51)
T ss_dssp TSCCCHHHHHH
T ss_pred cCCCCceEEEe
Confidence 46899998754
No 25
>3u5e_l L46, YL40, 60S ribosomal protein L39; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_O 2ww9_O 3izc_o 3izs_o 2wwb_O 3o5h_e 3o58_e 3u5i_l 4b6a_l 3jyw_1
Probab=21.01 E-value=25 Score=19.76 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=6.2
Q ss_pred CCCCCHHHH
Q psy11695 24 THEMSPWIR 32 (190)
Q Consensus 24 ~~~mp~WvR 32 (190)
.+++|.|++
T Consensus 20 Nr~iP~Wv~ 28 (51)
T 3u5e_l 20 NRPLPQWIR 28 (51)
T ss_dssp CSCCCGGGG
T ss_pred cCCCCceEE
Confidence 467888864
Done!