RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11695
(190 letters)
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 140 bits (353), Expect = 9e-40
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
MF+ V + +++LN R +TH +S I+ +FL+++P L M E+ +
Sbjct: 290 MFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPEKPQPR 349
Query: 61 RK-----ALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILH 115
R+ +K +E LK+ S+ + D R N + S D GT +
Sbjct: 350 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTS---------DIDIGTTVD 400
Query: 116 ATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTIL 175
E+ ++ I ++++++ +W V+D+ C I L L
Sbjct: 401 LYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSL 460
Query: 176 ATVAVLCSAPH 186
T+A+ +
Sbjct: 461 GTLAIFLTGHL 471
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 136 bits (343), Expect = 3e-38
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 13/190 (6%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
M +VA SV+ ++++LN HHR+ +TH M WIR +F++ +P L + RP
Sbjct: 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 371
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
+ K DF + S L+ T
Sbjct: 372 ISRANDEYFIRKPAG-------------DFVCPVDNARVAVQPERLFSEMKWHLNGLTQP 418
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
+ ++L ++ ++ I ++++ E ++ DW++ AMV DR+ L IF + T ++
Sbjct: 419 VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSI 478
Query: 181 LCSAPHIIVT 190
A H +
Sbjct: 479 FLDASHNVPP 488
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 136 bits (342), Expect = 4e-38
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 15/192 (7%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
M +V VV+ ++LN+H R TH +S ++ +FL+ +P IL MSR E ++
Sbjct: 317 MSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIEQPDWQ--- 373
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTL------QSSSHTFLRHDDSGGGTIL 114
+L+L+ SS ++ + + + L + G G
Sbjct: 374 ------NDLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNN 427
Query: 115 HATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTI 174
+ H E+ + I +I++++ E +W +DR+ + I T +
Sbjct: 428 ENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMV 487
Query: 175 LATVAVLCSAPH 186
L T+ +
Sbjct: 488 LGTIFIFVMGNF 499
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 121 bits (304), Expect = 2e-34
Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 3/186 (1%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
M +V +V+ ++LN+H R TH +S ++ +FL+ +P IL MSR E ++
Sbjct: 72 MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDL 131
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
+ + + S N+ + + G G +
Sbjct: 132 KLR---RSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAAS 188
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
H E+ + I +I++++ E +W +DR+ + I T +L T+ +
Sbjct: 189 DQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFI 248
Query: 181 LCSAPH 186
Sbjct: 249 FVMGNF 254
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 116 bits (292), Expect = 1e-32
Identities = 34/186 (18%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
MF+ V++ +++LN R +TH +S I+ +FL ++P L M E+ +
Sbjct: 73 MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPR 132
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
R++ ++ +E K + ++ + RH + D G L+ +
Sbjct: 133 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHG--LKRVNKMTSDIDIGTTVDLYKDLAN 190
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
P + ++ I ++++++ +W V+D+ C I L + T+A+
Sbjct: 191 FAPEIKSC--VEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAI 248
Query: 181 LCSAPH 186
+
Sbjct: 249 FLTGHF 254
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 115 bits (288), Expect = 3e-32
Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
M +VA SV+ ++++LN HHR+ +TH M WIR +F++ +P L + RP
Sbjct: 72 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 131
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
+ K + + + H L+ T
Sbjct: 132 ISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWH-------------LNGLTQP 178
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
+ ++L ++ ++ I ++++ E ++ DW++ AMV DR+ L +F + + T ++
Sbjct: 179 VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSI 238
Query: 181 LCSAPHIIV 189
A H +
Sbjct: 239 FLDASHNVP 247
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 109 bits (273), Expect = 1e-28
Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 36/184 (19%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
M V SS++ T++++N HHR+ TH M W+R +F+ +P ++ S
Sbjct: 306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRAS-------- 357
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
KE+ + A+ +DI D
Sbjct: 358 -----------KEKQENKIFADDIDISDISGKQVTGEVIFQTPLI--------------- 391
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
+ ++ ++ ++ I + ++ ++E++ +WK+ AMV+D + L +F L I+ TV+V
Sbjct: 392 --KNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSV 449
Query: 181 LCSA 184
Sbjct: 450 FAGR 453
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 99.9 bits (248), Expect = 2e-26
Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 36/184 (19%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
M V SS++ T++++N HHR+ TH M W+R +F+ +P ++ S K
Sbjct: 72 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASK------- 124
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
+ + + T +
Sbjct: 125 -----------------------------EKQENKIFADDIDISDISGKQVTGEVIFQTP 155
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
+ + ++ ++ ++ I + ++ ++E++ +WK+ AMV+D + L +F L I+ TV+V
Sbjct: 156 LIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSV 215
Query: 181 LCSA 184
Sbjct: 216 FAGR 219
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 69.4 bits (170), Expect = 1e-15
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRP 48
M V S+V T+ +LN HHR+ +TH WM I+ +
Sbjct: 78 MIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFIIVCLLGT 125
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 63.0 bits (153), Expect = 3e-12
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 134 LRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT 190
++ I ++++ E ++ DW++ AMV DR+ L IF + T ++ A H +
Sbjct: 309 IKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPP 365
Score = 52.6 bits (126), Expect = 1e-08
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSE 50
M +VA SV+ ++++LN HHR+ +THE I+ + Q +
Sbjct: 279 MILVAFSVILSVVVLNLHHRSPNTHEAVEAIKYIAEQLESASEFDDLKKD 328
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 57.9 bits (140), Expect = 2e-10
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 134 LRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSA 184
++ I + ++ ++E++ +WK+ AMV+D + L +F L I+ TV+V
Sbjct: 312 VKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 362
Score = 51.0 bits (122), Expect = 4e-08
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEE 51
M V SS++ T++++N HHR+ TH ++ + M S +EE
Sbjct: 282 MIFVISSIIVTVVVINTHHRSPSTHSAIEGVKYIAE-HMKSDEESSNAAEE 331
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 54.8 bits (132), Expect = 5e-10
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLV-------FLQWMPCILRMSRP 48
M +V S+V+++ +LN HHR+ TH V FL +
Sbjct: 99 MVLVTFSIVTSVCVLNVHHRSPTTHTPRGGGGYVAMVIDRLFLWIFVFVCVFGTI 153
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 54.1 bits (130), Expect = 3e-09
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSE 50
MF+ V + +++LN R +TH + S
Sbjct: 283 MFVSLVIVTNCVIVLNVSLRTPNTHSCVEACNFIAKSTKEQNDSGSENEN 332
Score = 53.7 bits (129), Expect = 4e-09
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 134 LRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPH 186
I ++++++ +W V+D+ C I L L T+A+ +
Sbjct: 313 CNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHL 365
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 51.4 bits (123), Expect = 3e-08
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMP 40
M +V VV+ ++LN+H R TH + Q
Sbjct: 281 MSLVTGVVVNCGIVLNFHFRTPSTHSGIDSTNYIVKQIKE 320
Score = 46.0 bits (109), Expect = 2e-06
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 134 LRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPH 186
I +I++++ E +W +DR+ + I T +L T+ +
Sbjct: 311 TNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-05
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 37/134 (27%)
Query: 49 SEEDKTSLTEATRKALKLKEL----ELKERSSK---------SL--------LANVLDID 87
SE+ S T+ T+ AL L E +LK + SL LA+V+ I+
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 88 D-----DFRHNTLQSSSHTFLRHDDSGGGTI-LHATTSCIGPHR-ELTLILKELRVITDK 140
+R T+Q + + D+ G + A I P R + + L+ + ++
Sbjct: 1781 SLVEVVFYRGMTMQVA----VPRDELGRSNYGMIA----INPGRVAASFSQEALQYVVER 1832
Query: 141 IQKE-DEAAEITND 153
+ K EI N
Sbjct: 1833 VGKRTGWLVEIVNY 1846
Score = 34.3 bits (78), Expect = 0.025
Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 40/109 (36%)
Query: 99 SHTFLRHDDSGGGTILHATTSCIGP-HRELTLILKELRVITDKIQKEDEAAEI------- 150
S+ FL S P H L L +D I K+ +
Sbjct: 417 SNRFLP------------VAS---PFHSHL------LVPASDLINKDLVKNNVSFNAKDI 455
Query: 151 ------TNDWK----FAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV 189
T D + + +R+ I L + A HI+
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRL-PVKWETTTQFKATHILD 503
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 41.1 bits (97), Expect = 9e-05
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 1 MFMVASSVVSTILI--LNYHHRNADTHEMSPWIRLVF 35
+V+ + L + A ++ R+ F
Sbjct: 267 YLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAF 303
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 38.1 bits (89), Expect = 8e-04
Identities = 5/45 (11%), Positives = 14/45 (31%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRM 45
+ ++++ I + + + RL F I +
Sbjct: 270 YGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAIGCV 314
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 36.0 bits (83), Expect = 0.002
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1 MFMVASSVVSTILILNYHHRN 21
V SS+ T ++N HHR+
Sbjct: 120 KEFVESSIKITEEVINTHHRS 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.011
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 15/79 (18%)
Query: 28 SPWIRLVF-LQWMPC-ILRMSRPSEEDKT---SLTEATRKALKLKELE--LKERSSKSLL 80
+ F L C IL +R K L+ AT + L L KSLL
Sbjct: 255 NAKAWNAFNLS---CKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 81 ANVLDID-DDFRHNTLQSS 98
LD D L ++
Sbjct: 308 LKYLDCRPQDLPREVLTTN 326
Score = 32.5 bits (73), Expect = 0.074
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 42/123 (34%)
Query: 15 LNYHHRNADTHEMSPWIRLVFL--QWMPCILRMSRPSEEDKTSLTEATRKALKLKELELK 72
+ +H +N + E R+VFL +++ E K++
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFL------------------EQ-----KIRHDSTA 513
Query: 73 ERSSKSLLANVLDI--------DDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPH 124
+S S+L + + D+D ++ L ++ FL +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK---------IEENLICSKY 564
Query: 125 REL 127
+L
Sbjct: 565 TDL 567
Score = 32.1 bits (72), Expect = 0.12
Identities = 11/93 (11%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 16 NYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELE--LKE 73
++HH + +T E + + + + D + + + L +E++ +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVD-----NFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 74 RSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHD 106
+ + S + + +Q LR +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Score = 29.4 bits (65), Expect = 0.80
Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 36/144 (25%)
Query: 41 CILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLLANVLDIDDDFR--------- 91
++ + + + + +L E+ K ++ I + +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLV-------EKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 92 HNTLQSSSHTFLRHDDSGGGTILHATT---SCIGPH----------RELTLILKELRVIT 138
H ++ + + DS + S IG H ++ + R +
Sbjct: 446 HRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 139 DKIQKEDEAAEITNDWKFAAMVVD 162
KI+ + A W + +++
Sbjct: 505 QKIRHDSTA------WNASGSILN 522
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 31.7 bits (72), Expect = 0.12
Identities = 5/46 (10%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHE-MSPWIRLVFLQWMPCILRM 45
M + +++ L+ + + +S + L+ P + +
Sbjct: 284 MTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFV 329
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.48
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 33/88 (37%)
Query: 31 IRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLLANVLDIDDDF 90
IR +W R EE + L E + +++ E +E++ K L +++
Sbjct: 87 IR----KW--------R--EEQRKRLQELDAASKVMEQ-EWREKAKKDL--------EEW 123
Query: 91 --RHNTLQSSSH--------TFLRHDDS 108
R + + F + D+
Sbjct: 124 NQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 27.0 bits (59), Expect = 3.6
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 42 ILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKS 78
I + R ++E E+ RK + + L+E + S
Sbjct: 74 IAQADRLTQE-----PESIRKWREEQRKRLQELDAAS 105
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 0.80
Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 47/154 (30%)
Query: 66 LKELELKERSSKSLLANVL---------DIDDDFRHNTLQSSSHTFLRHD---------- 106
+ + ++K + S+L + + + + +Q + D
Sbjct: 885 VDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEV---IVEEDLEPFEASKET 941
Query: 107 -----DSGGGTILHATTSCIGPHRELTLILKE-LRVITDKIQKEDE--AAEITNDWKFAA 158
G I E ++ L + + K + D A +I W
Sbjct: 942 AEQFKHQHGD---KVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKT 998
Query: 159 MV--------VDRMCLIIFTLFTILATV-AVLCS 183
VD TLF +++ V A + S
Sbjct: 999 YGISDDIISQVDP-----ITLFVLVSVVEAFIAS 1027
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D*
3su8_X*
Length = 644
Score = 29.0 bits (64), Expect = 1.2
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 14 ILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALK-LKELELK 72
+L+ ++ P R + ++W + S+ED TS + + L L+ ++
Sbjct: 293 MLDQLYKGVP-LTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVP 351
Query: 73 ERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILH 115
+ ++ +L+ + + + L D GG H
Sbjct: 352 DGATVALVPCLTKHVLRENQDYVPGERTPMLEDVDEGGIRPWH 394
>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET:
CIT; 2.02A {Yersinia pestis}
Length = 213
Score = 28.0 bits (63), Expect = 1.5
Identities = 4/45 (8%), Positives = 16/45 (35%)
Query: 30 WIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKER 74
+ + W + ++ + + ++ + + R+ L E
Sbjct: 102 MMHRIEHDWYSLLYKIEQGNAQEAEAARKQLREELLSIAPVFNET 146
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class
GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A
{Glycine max} PDB: 3fhs_A*
Length = 219
Score = 26.9 bits (60), Expect = 3.4
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 30 WIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKER 74
W V + ++ E+K + + +ALKL E +L ++
Sbjct: 98 WADYVDKKIYDLGRKIWTSKGEEKEAAKKEFIEALKLLEEQLGDK 142
>3lyk_A Stringent starvation protein A homolog; structural genomics,
GST-superfamily, SSPA, PSI-2, protein structure
initiative; 2.10A {Haemophilus influenzae}
Length = 216
Score = 26.9 bits (60), Expect = 4.2
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 30 WIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKER 74
+ + W P + + +E++KTS + ++ L ++
Sbjct: 98 LMLRIEQDWYPTLAKAENGTEKEKTSALKQLKEELLGIAPIFQQM 142
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia
coli} SCOP: d.80.1.2
Length = 125
Score = 26.0 bits (57), Expect = 4.6
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 45 MSRPSEEDKTSLTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLR 104
+ S E + E + +K L E +L + ++ Q++ H +
Sbjct: 68 GAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIEELHPTLNFK--QNNVHALFK 125
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 26.7 bits (58), Expect = 5.8
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 55 SLTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTIL 114
+L E R L+ E+E+ E + + ++ + + + T L +
Sbjct: 15 NLLETRRSLLE--EMEIIENAIAERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENKI 72
Query: 115 HATTSCIGPHRELTLILKELRVITDKIQK 143
+ +++ L E+ + Q+
Sbjct: 73 YKFKKVKRKRKQIILQQHEINIFLRDYQE 101
>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH;
1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5
Length = 231
Score = 26.3 bits (58), Expect = 6.8
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 30 WIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERS 75
W V + C R+ R E + + + L+ E EL +R
Sbjct: 107 WADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDRE 152
>3fvc_A GP115, glycoprotein GP110; viral fusion protein, PH domains, fusion
loops, glycoprotein protein, membrane, transmembrane,
viral protein; HET: NAG; 3.20A {Human herpesvirus 4}
Length = 663
Score = 26.5 bits (58), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 67 KELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHD 106
LEL R + +NV D++ FR Q+ + LR D
Sbjct: 617 ASLELYSRDEQRA-SNVFDLEGIFREYNFQAQNIAGLRKD 655
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,826,953
Number of extensions: 157349
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 43
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.2 bits)