RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11695
(190 letters)
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 114 bits (286), Expect = 2e-32
Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
M +VA SV+ ++++LN HHR+ +TH M WIR +F++ +P L + RP ++ T
Sbjct: 72 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPD-SKPT 130
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
+ E +++ + DF + S L+ T
Sbjct: 131 IISRANDEYFIRKPAG------------DFVCPVDNARVAVQPERLFSEMKWHLNGLTQP 178
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
+ ++L ++ ++ I ++++ E ++ DW++ AMV DR+ L +F + + T ++
Sbjct: 179 VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSI 238
Query: 181 LCSAPH 186
A H
Sbjct: 239 FLDASH 244
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 109 bits (273), Expect = 2e-30
Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 4/186 (2%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
MF+ V++ +++LN R +TH +S I+ +FL ++P L M E+ +
Sbjct: 73 MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPR 132
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
R++ ++ +E K + ++ + RH + + T D GT +
Sbjct: 133 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMT----SDIDIGTTVDLYKDL 188
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
E+ ++ I ++++++ +W V+D+ C I L + T+A+
Sbjct: 189 ANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAI 248
Query: 181 LCSAPH 186
+
Sbjct: 249 FLTGHF 254
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 109 bits (272), Expect = 4e-30
Identities = 37/187 (19%), Positives = 76/187 (40%), Gaps = 9/187 (4%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSL---T 57
M +V +V+ ++LN+H R TH +S ++ +FL+ +P IL MSR E ++
Sbjct: 72 MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDL 131
Query: 58 EATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHAT 117
+ R + + +E + + ++ RH + + G G
Sbjct: 132 KLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVT------PRIGFGNNNENI 185
Query: 118 TSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILAT 177
+ H E+ + I +I++++ E +W +DR+ + I T +L T
Sbjct: 186 AASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGT 245
Query: 178 VAVLCSA 184
+ +
Sbjct: 246 IFIFVMG 252
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 95.6 bits (237), Expect = 3e-25
Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
M V SS++ T++++N HHR+ TH M W+R +F+ +P ++ S K
Sbjct: 72 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASK------- 124
Query: 61 RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
E+ + A+ +DI D +
Sbjct: 125 ------------EKQENKIFADDIDISDISGKQVTGEVIFQ-----------------TP 155
Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
+ + ++ ++ ++ I + ++ ++E++ +WK+ AMV+D + L +F L I+ TV+V
Sbjct: 156 LIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSV 215
Query: 181 LCS 183
Sbjct: 216 FAG 218
>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 190
Score = 27.0 bits (60), Expect = 1.2
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 51 EDKTSLTEATRKALKLKELELKERS-SKSLLANVLDID-----DDFRHNTLQSSSHTFLR 104
E + + EA E +ER ++ LL ++ ++ D+ + + ++ ++R
Sbjct: 126 EQELAQLEAWVG-RDRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMR 184
Query: 105 H 105
H
Sbjct: 185 H 185
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 145
Score = 24.7 bits (53), Expect = 5.5
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 30 WIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKER 74
W V + C R+ R E + + + L+ E EL +R
Sbjct: 22 WADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDR 66
>d1otga_ d.80.1.2 (A:) 5-carboxymethyl-2-hydroxymuconate isomerase
(CHMI) {Escherichia coli [TaxId: 562]}
Length = 125
Score = 24.3 bits (53), Expect = 7.8
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 45 MSRPSEEDKTSLTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLR 104
+ S E + E + +K L E +L + ++ Q++ H +
Sbjct: 68 GAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIEELHPTLNFK--QNNVHALFK 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 672,601
Number of extensions: 27975
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 11
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.2 bits)