Query psy11698
Match_columns 197
No_of_seqs 161 out of 693
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 16:36:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oed_B Acetylcholine receptor 99.9 1.9E-28 6.6E-33 204.6 2.3 68 117-184 181-248 (250)
2 1oed_C Acetylcholine receptor 99.9 3.3E-28 1.1E-32 204.3 0.1 70 116-185 190-259 (260)
3 1oed_E Acetylcholine receptor 99.9 5.6E-28 1.9E-32 202.8 0.5 69 116-184 190-258 (260)
4 4aq5_E Acetylcholine receptor 99.9 3.3E-27 1.1E-31 213.8 4.3 71 117-187 408-478 (488)
5 4aq5_C Acetylcholine receptor 99.9 5.8E-27 2E-31 213.8 -0.8 72 116-187 435-506 (522)
6 4aq5_B Acetylcholine receptor 99.9 4.5E-26 1.5E-30 206.7 2.4 70 116-185 420-489 (493)
7 1oed_A Acetylcholine receptor 99.9 7.9E-26 2.7E-30 186.4 1.5 60 118-177 159-218 (227)
8 4aq5_A Acetylcholine receptor 99.9 6.5E-25 2.2E-29 197.6 1.1 64 117-180 392-455 (461)
9 2bg9_B Acetylcholine receptor 99.4 1.1E-13 3.6E-18 121.2 4.4 64 124-187 305-368 (370)
10 2bg9_C Acetylcholine receptor 99.4 2.9E-13 1E-17 118.3 4.3 62 124-185 307-368 (369)
11 2bg9_E Acetylcholine receptor 99.3 8.4E-13 2.9E-17 115.4 4.8 61 124-184 309-369 (370)
12 2bg9_A Acetylcholine receptor 99.1 1.8E-11 6.1E-16 107.0 2.5 55 123-177 307-361 (370)
13 2ksr_A Neuronal acetylcholine 98.5 5.1E-08 1.7E-12 76.2 2.6 35 148-183 129-163 (164)
14 2lly_A Neuronal acetylcholine 97.9 6.3E-06 2.2E-10 62.4 3.0 31 152-183 106-136 (137)
15 2ljb_A M2 protein, BM2 protein 27.4 37 0.0013 18.9 1.8 17 145-161 16-32 (35)
16 1wlq_A Geminin; coiled-coil; 2 24.4 1.5E+02 0.005 19.9 4.8 38 121-158 43-81 (83)
No 1
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.94 E-value=1.9e-28 Score=204.59 Aligned_cols=68 Identities=43% Similarity=0.824 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccc
Q psy11698 117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEY 184 (197)
Q Consensus 117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~ 184 (197)
.++++++++++|+||++|++++|+++++++||||||||+||+|||+|++++++||++||++||++|+.
T Consensus 181 ~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~ 248 (250)
T 1oed_B 181 LPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASHNVPP 248 (250)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999875
No 2
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.93 E-value=3.3e-28 Score=204.26 Aligned_cols=70 Identities=21% Similarity=0.390 Sum_probs=32.4
Q ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCccccccc
Q psy11698 116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYV 185 (197)
Q Consensus 116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~ 185 (197)
..++++++++++|+||++|++++|+++++++||||||||+||+|||+|++++++||++||++||++|+++
T Consensus 190 ~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~~ 259 (260)
T 1oed_C 190 QLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNHPPA 259 (260)
T ss_dssp ------------------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 3557999999999999999999999999999999999999999999999999999999999999998764
No 3
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.93 E-value=5.6e-28 Score=202.82 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=31.7
Q ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccc
Q psy11698 116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEY 184 (197)
Q Consensus 116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~ 184 (197)
..++++++++++|+||++|++++|+++++++||||||||+||+|||+|++++++||++||++||+++++
T Consensus 190 ~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~ 258 (260)
T 1oed_E 190 NFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGHFNQVP 258 (260)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 355789999999999999999999999999999999999999999999999999999999999999864
No 4
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.93 E-value=3.3e-27 Score=213.84 Aligned_cols=71 Identities=24% Similarity=0.379 Sum_probs=59.8
Q ss_pred CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccccch
Q psy11698 117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQ 187 (197)
Q Consensus 117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~~~ 187 (197)
+.+++++|+++|+|||+|+|++|+++++.+||||||||+||+|||+|+++|++||++||++|+..+....|
T Consensus 408 ~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p 478 (488)
T 4aq5_E 408 FAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFP 478 (488)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred cCHHHHHHHHHHHHHHHHHhhhhHHhhhhhcceEEEeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999998887766553
No 5
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.92 E-value=5.8e-27 Score=213.81 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccccch
Q psy11698 116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQ 187 (197)
Q Consensus 116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~~~ 187 (197)
.+.+++++++++|+|||+|+|++|+++++++||||||||+||+|||+|+++|++||++||++++..+....|
T Consensus 435 ~~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~va~V~DRl~l~~f~~~~~~gt~~i~~~~~~~~~~~~p 506 (522)
T 4aq5_C 435 QLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPAKP 506 (522)
T ss_dssp -------CCTTTTTHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCC-
T ss_pred ccCHHHHHHHHHHHHHHHHHhhhhhhhhhccceeEeeeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Confidence 356899999999999999999999999999999999999999999999999999999999999888776654
No 6
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.91 E-value=4.5e-26 Score=206.69 Aligned_cols=70 Identities=41% Similarity=0.732 Sum_probs=59.9
Q ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCccccccc
Q psy11698 116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYV 185 (197)
Q Consensus 116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~ 185 (197)
...+++++++++|+|||+|++++++++++.+||||||||+||+|||+|+++|++||++||+++|..+...
T Consensus 420 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~ 489 (493)
T 4aq5_B 420 TLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPD 489 (493)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSS
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhhHhhhhhcceEEEEEehhHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 4568999999999999999999999999999999999999999999999999999999999988766544
No 7
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.91 E-value=7.9e-26 Score=186.37 Aligned_cols=60 Identities=38% Similarity=0.800 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy11698 118 SPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMD 177 (197)
Q Consensus 118 ~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~ 177 (197)
++++++++++++||++|++++|+++++++||||||||+||+|||+|++++++||++||++
T Consensus 159 ~~~l~~~~~~v~~I~~~~~~~~~~~~~~~dWk~vA~VlDRl~l~iF~~~~i~gT~~i~~~ 218 (227)
T 1oed_A 159 NPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG 218 (227)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999999998
No 8
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.89 E-value=6.5e-25 Score=197.58 Aligned_cols=64 Identities=36% Similarity=0.713 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcc
Q psy11698 117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180 (197)
Q Consensus 117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~ 180 (197)
..+++++++++++|||+|++++++++++.+||||||||+||+|||+|+++|++||++||++++.
T Consensus 392 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va~v~Dr~~l~~f~~~~~~gt~~i~~~~~~ 455 (461)
T 4aq5_A 392 KNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGRLI 455 (461)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhhHHHHhhhhhheeeeeeHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999999998643
No 9
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.40 E-value=1.1e-13 Score=121.18 Aligned_cols=64 Identities=44% Similarity=0.781 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccccch
Q psy11698 124 ATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQ 187 (197)
Q Consensus 124 ~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~~~ 187 (197)
+++++++|++|+++++++++.++||++||+|+||+|||+|++++++||++||++||++++...|
T Consensus 305 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~v~Dr~~~~~f~~~~~~~t~~i~~~~~~~~~~~~~ 368 (370)
T 2bg9_B 305 AVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNP 368 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCC
T ss_pred chhhHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCC
Confidence 6788999999999999999999999999999999999999999999999999999999987653
No 10
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.36 E-value=2.9e-13 Score=118.31 Aligned_cols=62 Identities=21% Similarity=0.399 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCccccccc
Q psy11698 124 ATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYV 185 (197)
Q Consensus 124 ~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~ 185 (197)
+++++++|+++++++++.++.++||+++|+|+||+|||+|++++++||++||++||++++.+
T Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~~~~i~~~~~~~~~~~ 368 (369)
T 2bg9_C 307 GIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPA 368 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 57889999999999999999999999999999999999999999999999999999998764
No 11
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.32 E-value=8.4e-13 Score=115.39 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccc
Q psy11698 124 ATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEY 184 (197)
Q Consensus 124 ~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~ 184 (197)
+++++++|++|++++++.++.++||+++|+|+||+|||+|++++++||++||++||++++.
T Consensus 309 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~~~~~~~~ 369 (370)
T 2bg9_E 309 CVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVP 369 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 6778999999999999999999999999999999999999999999999999999998764
No 12
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.11 E-value=1.8e-11 Score=106.97 Aligned_cols=55 Identities=40% Similarity=0.803 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy11698 123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMD 177 (197)
Q Consensus 123 ~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~ 177 (197)
++++++++|+++++++++.++.++||+++|+|+||+|||+|.+++++||++||++
T Consensus 307 ~~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~ 361 (370)
T 2bg9_A 307 SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG 361 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999999999999999999999986
No 13
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=98.47 E-value=5.1e-08 Score=76.20 Aligned_cols=35 Identities=49% Similarity=0.795 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCccccc
Q psy11698 148 WKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFE 183 (197)
Q Consensus 148 Wk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~ 183 (197)
+|+||+|+||+|||+|.+++++||++|+++ |.+++
T Consensus 129 ~k~~a~v~Dr~~l~~f~~~~~~~t~~i~~~-p~~~~ 163 (164)
T 2ksr_A 129 GGYVAMVIDRLFLWIFVFVCVFGTIGMFLQ-PLFQN 163 (164)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHheec-ccccc
Confidence 499999999999999999999999999999 88875
No 14
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=97.87 E-value=6.3e-06 Score=62.38 Aligned_cols=31 Identities=35% Similarity=0.658 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcCccccc
Q psy11698 152 AMVIDRLQLYIFFIVTTAGTLGILMDAPHIFE 183 (197)
Q Consensus 152 A~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~ 183 (197)
++|+||+|||+|.+++++||++|+++ |+.+|
T Consensus 106 ~~~~dr~~lwif~~~~~~gt~~i~~~-p~~~~ 136 (137)
T 2lly_A 106 GGGIDRIFLWMFIIVCLLGTVGLFLP-PWLAG 136 (137)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHCC-STTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhhhheec-ccccC
Confidence 48999999999999999999999999 98876
No 15
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=27.35 E-value=37 Score=18.89 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy11698 145 REDWKYVAMVIDRLQLY 161 (197)
Q Consensus 145 ~~dWk~vA~VlDRlfl~ 161 (197)
..-|.++.-++||+|+.
T Consensus 16 igiLHlilWildrLff~ 32 (35)
T 2ljb_A 16 IGILHFIAWTIGHLNQI 32 (35)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhhhHhh
Confidence 44567778888998874
No 16
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.39 E-value=1.5e+02 Score=19.92 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhchhH-HhhhhhhHHHHHHHHHHH
Q psy11698 121 ASKATEAVEFIAEHLRSEDQ-YIQIREDWKYVAMVIDRL 158 (197)
Q Consensus 121 l~~~~~~v~~Ia~~~~~~~~-~~~~~~dWk~vA~VlDRl 158 (197)
|++.++..+--...++.+++ -.++.+.=+|.|-||+|+
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444333334444433 344556668999999986
Done!