RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11698
         (197 letters)



>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel
           transmembrane region.  This family includes the four
           transmembrane helices that form the ion channel.
          Length = 228

 Score =  102 bits (257), Expect = 3e-27
 Identities = 56/174 (32%), Positives = 69/174 (39%), Gaps = 38/174 (21%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W+R +FL  LP +L MKRP ++           S     S   PA            
Sbjct: 92  MPEWVRKLFLRKLPRLLFMKRPPESLSPPAAPNLRRSSSSSGSVLEPA------------ 139

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
                            + +        S L  P                      LSPE
Sbjct: 140 ------SGKESKGVGGPETSSGLPGGSGSGLGSPFR--------------------LSPE 173

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGI 174
             KA E V FIAEHLRS D++ +++EDWKYVAMVIDRL  +IF I    GTL  
Sbjct: 174 LKKALEGVRFIAEHLRSRDEFDEVKEDWKYVAMVIDRLSRWIFPIAFVLGTLVY 227


>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein.  The
           Ligand-gated Ion Channel (LIC) Family of
           Neurotransmitter Receptors TC 1.A.9)Members of the LIC
           family of ionotropic neurotransmitter receptors are
           found only in vertebrate and invertebrate animals. They
           exhibit receptor specificity for (1)acetylcholine, (2)
           serotonin, (3) glycine, (4) glutamate and (5)
           g-aminobutyric acid (GABA). All of these receptor
           channels are probably hetero- orhomopentameric. The best
           characterized are the nicotinic acetyl-choline receptors
           which are pentameric channels of a2bgd subunit
           composition. All subunits arehomologous. The three
           dimensional structures of the protein complex in both
           the open and closed configurations have been solved at
           0.9 nm resolution.The channel protein complexes of the
           LIC family preferentially transport cations or anions
           depending on the channel (e.g., the acetylcholine
           receptors are cationselective while glycine receptors
           are anion selective) [Transport and binding proteins,
           Cations and iron carrying compounds].
          Length = 459

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 10/137 (7%)

Query: 43  SYGSPAELPRHITPSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINR-- 100
            +  PA+  RH+     +    +     D   P            LS +        R  
Sbjct: 328 HHKDPAQGKRHLLLERCAWRLCKQEPGEDYRRPALDH------ASLSSVEMRAKDGGRGL 381

Query: 101 -KASTERRESESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQ 159
              +  +R   S        + +   E V       R  D+  ++  DWK+ A VID+L 
Sbjct: 382 ESPTERQRLLHSPPPAEGDLDLAGILEEVRIA-HRFRKRDESEEVVRDWKFRAKVIDKLS 440

Query: 160 LYIFFIVTTAGTLGILM 176
              F +      +G  M
Sbjct: 441 RMAFPLAFLLFNIGYWM 457


>gnl|CDD|152134 pfam11698, V-ATPase_H_C, V-ATPase subunit H.  The yeast
           Saccharomyces cerevisiae vacuolar H+-ATPase (V-ATPase)
           is a multisubunit complex responsible for acidifying
           organelles. It functions as an ATP dependent proton pump
           that transports protons across a lipid bilayer. This
           domain corresponds to the C terminal domain of the H
           subunit of V-ATPase. The N-terminal domain is required
           for the activation of the complex whereas the C-terminal
           domain is required for coupling ATP hydrolysis to proton
           translocation.
          Length = 119

 Score = 27.9 bits (63), Expect = 1.5
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 7/35 (20%)

Query: 73  HHPNCK-----INRKARVMELSDLHHPNCKINRKA 102
            +P  K     +  KARVMEL  + H + ++  +A
Sbjct: 74  LYPEGKNILEKLGVKARVMEL--MSHEDPEVRYEA 106


>gnl|CDD|225995 COG3464, COG3464, Transposase and inactivated derivatives [DNA
           replication, recombination, and repair].
          Length = 402

 Score = 27.8 bits (62), Expect = 4.5
 Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 4/87 (4%)

Query: 73  HHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPEASKATEAVEFIA 132
                K  +              C  N +  +  R    S  L        A      +A
Sbjct: 255 FRSEDKRIKALWKRRARLSSRYLCDKNFQNLSLLRYERLSPILGELYSLYPALRVAYDLA 314

Query: 133 EHLRSEDQYIQIREDWKYVAMVIDRLQ 159
           + L ++ +    RE  K +   I+   
Sbjct: 315 QELAADRR----REAVKKLIQWIEDAV 337


>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
          Length = 446

 Score = 27.7 bits (61), Expect = 5.1
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 17  LLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPSKSKMEVMELSDLHHPN 76
           L+   PK + + WMM++ G+S P  P +      P HI  S   K+    +++ +L  P+
Sbjct: 181 LMSDNPKASTISWMMKL-GIS-PSKPDHD--GNTPLHIVCSKTVKN----VDIINLLLPS 232

Query: 77  CKINRKAR 84
             +N++ +
Sbjct: 233 TDVNKQNK 240


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0787    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,203,492
Number of extensions: 914441
Number of successful extensions: 901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 15
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)