RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11698
(197 letters)
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 105 bits (263), Expect = 6e-27
Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 23/180 (12%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
+ ++ +FL LP +L M R + + Y S A+ +I +
Sbjct: 343 LSTRVKQIFLEKLPRILHMSRVDEIEQPDWQNDLKLRRSSSVGYISKAQEYFNIKSRSEL 402
Query: 61 KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
+ + S+ H ++ + + S L E
Sbjct: 403 MFEKQ-----------------------SERHGLVPRVTPRIGFGNNNENIAASDQLHDE 439
Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
++ +I + ++ ++ Y + +W V IDRL ++I V GT+ I +
Sbjct: 440 IKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF 499
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 103 bits (257), Expect = 4e-26
Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 24/180 (13%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
+ I+ +FL +LP L M +P + S
Sbjct: 316 LSEKIKHLFLEFLPKYLGMHLEPSEE-------------------TPEKPQPRRRSSFGI 356
Query: 61 KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
K E L +K R K+ D +PE
Sbjct: 357 MIKAEEYILKKPRSELMFEEQKDR-----HGLKRVNKMTSDIDIGTTVDLYKDLANFAPE 411
Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
EA FIA+ + ++ E+W + VID+ +I ++ + GTL I +
Sbjct: 412 IKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHL 471
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 102 bits (254), Expect = 1e-25
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 33/180 (18%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
MP WIR +F+ LP L ++RP T P+ S
Sbjct: 338 MPNWIRQIFIETLPPFLWIQRPVTTP------------------------SPDSKPTIIS 373
Query: 61 KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
++ E C ++ + + + + + L +
Sbjct: 374 RANDEYFIRKPAGDFVCPVDNA---------RVAVQPERLFSEMKWHLNGLTQPVTLPQD 424
Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
+A EA+++IAE L S ++ +++DW+YVAMV DRL LYIF + + GT I +DA H
Sbjct: 425 LKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASH 484
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 96.1 bits (238), Expect = 1e-24
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 23/180 (12%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
+ ++ +FL LP +L M R ++ + Y S A+
Sbjct: 98 LSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQ----------- 146
Query: 61 KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
+ N K + + S+ H ++ + + S L E
Sbjct: 147 ------------EYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASDQLHDE 194
Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
++ +I + ++ ++ Y + +W V IDRL ++I V GT+ I +
Sbjct: 195 IKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF 254
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 90.0 bits (222), Expect = 2e-22
Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 24/180 (13%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
+ I+ +FL +LP L M+ + S S
Sbjct: 99 LSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPRRRS-------------------SFGI 139
Query: 61 KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
K E L +K R K+ D +PE
Sbjct: 140 MIKAEEYILKKPRSELMFEEQKDR-----HGLKRVNKMTSDIDIGTTVDLYKDLANFAPE 194
Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
EA FIA+ + ++ E+W + VID+ +I ++ + GTL I +
Sbjct: 195 IKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGHF 254
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 87.3 bits (215), Expect = 2e-21
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 33/181 (18%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
MP WIR +F+ LP L ++RP T P+ S
Sbjct: 98 MPNWIRQIFIETLPPFLWIQRPVTTPSPDSK------------------------PTIIS 133
Query: 61 KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
++ E C ++ + + + + + L +
Sbjct: 134 RANDEYFIRKPAGDFVCPVDNA---------RVAVQPERLFSEMKWHLNGLTQPVTLPQD 184
Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
+A EA+++IAE L S ++ +++DW+YVAMV DRL LY+FF++ + GT I +DA H
Sbjct: 185 LKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASH 244
Query: 181 I 181
Sbjct: 245 N 245
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 75.0 bits (184), Expect = 3e-16
Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 56/178 (31%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
MP W+R +F++ +P V+ K+
Sbjct: 332 MPQWVRKIFINTIPNVMFFSTMKRASKEKQENK--------------------------- 364
Query: 61 KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
+ I+ K E+ + K
Sbjct: 365 --------IFADDIDISDISGKQVTGEVIFQTPLIKNPDVK------------------- 397
Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDA 178
A E V++IAEH++S+++ E+WKYVAMVID + L +F ++ GT+ +
Sbjct: 398 --SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 453
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 73.0 bits (179), Expect = 1e-15
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 118 SPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMD 177
SP +A EA+++IAE L S ++ +++DW+YVAMV DRL LYIF + + GT I +D
Sbjct: 299 SPNTHEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLD 358
Query: 178 APH 180
A H
Sbjct: 359 ASH 361
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 69.1 bits (168), Expect = 9e-15
Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 56/178 (31%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
MP W+R +F+ +P V+ K+
Sbjct: 98 MPQWVRKIFIDTIPNVMFFSTMKRASKEKQENKIFADDIDISDISG-------------- 143
Query: 61 KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
++ + +++ D+ +
Sbjct: 144 ------------KQVTGEVIFQTPLIKNPDVKSAIEGVK--------------------- 170
Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDA 178
+IAEH++S+++ E+WKYVAMVID + L +F ++ GT+ +
Sbjct: 171 ---------YIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 219
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 68.0 bits (166), Expect = 7e-14
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 128 VEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQ 187
V++IAEH++S+++ E+WKYVAMVID + L +F ++ GT+ + + E +
Sbjct: 312 VKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR--LIELSQE 369
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 64.9 bits (158), Expect = 7e-13
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 128 VEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
FIA+ + ++ E+W + VID+ +I ++ + GTL I +
Sbjct: 313 CNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHL 365
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 60.7 bits (147), Expect = 2e-11
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 128 VEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
+I + ++ ++ Y + +W V IDRL ++I V GT+ I +
Sbjct: 311 TNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF 363
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 34.4 bits (79), Expect = 0.007
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLR 28
++ I++ + L
Sbjct: 104 GGGGGIDRIFLWMFIIVCLLGTVGLFLP 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.2
Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 33/129 (25%)
Query: 2 PPWIRGMFLHYL----------------PIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYG 45
PP++ F ++ +V L R++ + + G
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-------DFRFLEQKIRHDSTAWNASG 518
Query: 46 SPAEL-------PRHITPSAPSKSKM--EVMELSDLHHPNCKINRKARVMELSDLHHPNC 96
S +I + P ++ +++ N ++ ++ ++ L +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA-LMAEDE 577
Query: 97 KINRKASTE 105
I +A +
Sbjct: 578 AIFEEAHKQ 586
Score = 27.5 bits (60), Expect = 3.9
Identities = 20/169 (11%), Positives = 52/169 (30%), Gaps = 41/169 (24%)
Query: 65 EVMELSDLHHPNCKINR--KARVMELSDLH-HPNCKINRKASTERRESESSDSLLLSPEA 121
+VM + + H + + K + + ++ K+ + + R + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 122 SKATEAVE-----FIAEHLRSEDQY---------------IQ--IRED---WKYVAMVID 156
++ I HL++ + ++ IR D W +++
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 157 RLQ---LYIFFIVTTAGT----LGILMD-----APHIFEYVDQDRIIEI 193
LQ Y +I + ++D ++ D ++ I
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD-LLRI 570
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 27.1 bits (60), Expect = 2.5
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWM 30
+ I +FL V +
Sbjct: 132 VAMVIDRLFLWIFVFVCVFGTIGMFLQPLF 161
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding
protein, nucleotide-binding motif, hydrolase; HET: GP2;
1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A
2h2u_A
Length = 331
Score = 27.2 bits (60), Expect = 4.3
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 59 PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKI 98
S K+ V D + K R MELSDL N K+
Sbjct: 68 DSGDKVAVEWDKDHGVLESHLAEKGRGMELSDLIVFNGKL 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 6.2
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 83 ARVMELSDLHHPNCKI--NR----KASTERRESESSDSLL--LSPE---ASKATEAVEFI 131
A VM + L ++ R + + R E S+ + ++P AS + EA++++
Sbjct: 1774 ADVMSIESL----VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 132 AEHLRSE-DQYIQI 144
E + ++I
Sbjct: 1830 VERVGKRTGWLVEI 1843
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair,
alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.113.1.3
Length = 155
Score = 25.5 bits (56), Expect = 9.4
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 16 VLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPSKSKMEVMELSDLHH 74
+LL++RP L + E P ++ P L + + A + L ++ H
Sbjct: 36 ILLVQRPNSGLLAGLWEFPSVTWEPSEQ-LQRKALLQELQRWAGPLPATHLRHLGEVVH 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.411
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,120,286
Number of extensions: 171902
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 25
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)