RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11698
         (197 letters)



>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score =  101 bits (253), Expect = 3e-27
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           +   ++ +FL  LP +L M R  ++          +       Y S A+           
Sbjct: 98  LSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQ----------- 146

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
                        + N K   +    + S+ H    ++  +          + S  L  E
Sbjct: 147 ------------EYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASDQLHDE 194

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDA 178
                ++  +I + ++ ++ Y +   +W  V   IDRL ++I   V   GT+ I +  
Sbjct: 195 IKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMG 252


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 99.5 bits (247), Expect = 2e-26
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 33/180 (18%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP WIR +F+  LP  L ++RP  T                              P+  S
Sbjct: 98  MPNWIRQIFIETLPPFLWIQRPVTTP------------------------SPDSKPTIIS 133

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
           ++  E           C ++     ++   L             +   +  +  + L  +
Sbjct: 134 RANDEYFIRKPAGDFVCPVDNARVAVQPERLFS---------EMKWHLNGLTQPVTLPQD 184

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
             +A EA+++IAE L S  ++  +++DW+YVAMV DRL LY+FF++ + GT  I +DA H
Sbjct: 185 LKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASH 244


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 91.0 bits (225), Expect = 4e-23
 Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 24/180 (13%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           +   I+ +FL +LP  L M+           E P    P   S               P 
Sbjct: 99  LSEKIKHLFLGFLPKYLGMQLEP------SEETPEKPQPRRRSSFGIMIKAEEYILKKPR 152

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
            S++   E  D H                       K+              D    +PE
Sbjct: 153 -SELMFEEQKDRHGL-----------------KRVNKMTSDIDIGTTVDLYKDLANFAPE 194

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
                EA  FIA+  + ++      E+W  +  VID+   +I  ++ + GTL I +    
Sbjct: 195 IKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGHF 254


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 67.4 bits (164), Expect = 1e-14
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 56/175 (32%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W+R +F+  +P V+     K+                                   +
Sbjct: 98  MPQWVRKIFIDTIPNVMFFSTMKRAS----------------------------KEKQEN 129

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
           K   + +++SD+                                   E      L+ +P+
Sbjct: 130 KIFADDIDISDISGKQ----------------------------VTGEVIFQTPLIKNPD 161

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGIL 175
              A E V++IAEH++S+++     E+WKYVAMVID + L +F ++   GT+ + 
Sbjct: 162 VKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVF 216


>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY,
          C-terminal domain {Bacillus stearothermophilus [TaxId:
          1422]}
          Length = 127

 Score = 25.5 bits (55), Expect = 2.9
 Identities = 7/28 (25%), Positives = 9/28 (32%)

Query: 16 VLLMKRPKKTRLRWMMEMPGMSVPPHPS 43
          VL+ KR     L  + E P         
Sbjct: 18 VLIRKRDSTGLLANLWEFPSCETDGADG 45


>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
           {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
          Length = 321

 Score = 25.2 bits (55), Expect = 5.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           G + +  D P IF  V+ DRI  +Y   
Sbjct: 237 GDVQLNFDMPFIFAEVNADRITWLYDNT 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 766,028
Number of extensions: 33574
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 13
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)