BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11701
(745 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 10/173 (5%)
Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
++ Y I++ T P Y P T S+ + + P Y + + K G
Sbjct: 35 ILHYTIQF----NTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPP 90
Query: 594 SKYLFY------VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTG 647
S + VPFKNPDNV G+G+ PNNLVISWT MPEIEHNAP+F Y + W+R
Sbjct: 91 SAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPA 150
Query: 648 EAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGE 700
AW +++ DWRQ+ +V+A+QPTF Y IKVV + + E++ GE
Sbjct: 151 AAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 203
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 2/177 (1%)
Query: 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSD 98
T ++ LR + L CI G P P W K G + PSD+ N+ K+L I +V D
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKFENFNKALRITNVSEED 286
Query: 99 QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH 158
G Y C SN +G + ++I + V AAPY+ EP+ + A E C+A+G P+P +
Sbjct: 287 SGEYFCLASNKMGSIR-HTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 345
Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
W+ NG+P+ APPNP R+V + I + + S Y CN +N GY+ + +V+VL
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 152/369 (41%), Gaps = 31/369 (8%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSD----QGSYTCEVSN 108
C G P P W+++ N + R+S +L+I +G Y C N
Sbjct: 39 CEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARN 98
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKAS-GLPEPEIHWVHNG-KP 165
G A S I L V +P + E + + E +T +C GLP P I W+ + +P
Sbjct: 99 KFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP 158
Query: 166 ISQAPPNPRRKVGPN-RITIENLRKSDTG-NYGCNATNSLGYVYKD---VYVNVLAHAPE 220
I+Q + R G N + N+ D +Y CNA + + + VL
Sbjct: 159 ITQ---DKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215
Query: 221 ITEAPKDEY---------TVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD 271
P Y + G ++L C G P P++ W +L +
Sbjct: 216 AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK 275
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
L+IT+V+ DSGEY C A NK+G+ + + S+ VK + D+P++ + G+ C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS-GQYTCRAQTELDF 389
A +P K ++ W+ EP+ + P + + + +++ S Y C E +
Sbjct: 336 ANGNP--KPTVQWMVNGEPLQ-SAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGY 392
Query: 390 IEAQATLTV 398
+ A A ++V
Sbjct: 393 LLANAFVSV 401
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 117/297 (39%), Gaps = 30/297 (10%)
Query: 140 EETVTFECKASGLPEPEIHWVHNGK--PISQAPP-NPRRKVGPNRITIENLRKSD--TGN 194
+ + EC+A G P P HW N + I++ P + RR+ G I + + + G
Sbjct: 32 RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGE 91
Query: 195 YGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCR-VFGAPKPEVNW 252
Y C A N G + ++ +P + D V +G + L C G P P + W
Sbjct: 92 YQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW 151
Query: 253 IHNQKE--LTGGRYTILETGDLKITDVAFAD-SGEYTCFARNKL-GTAQGSGSLTVK--- 305
+ + E R + GDL ++V D +Y+C AR T Q T+K
Sbjct: 152 MSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLT 211
Query: 306 -----EHTHITDQPE----DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
E T P+ V G C A P+ I W + D S+
Sbjct: 212 TRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT--PDIAWYKKGG--DLPSDK 267
Query: 357 RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP---LEAPSNFTL 410
++ + +L +T SE DSG+Y C A ++ I ++ V+ L+ P N L
Sbjct: 268 AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLIL 324
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 29/208 (13%)
Query: 213 NVLAHAPEITEAPKDEYTVDGK-TVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILE 268
N L P IT+ ++ VD + +++ C G P P +W N + R ++
Sbjct: 11 NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR 70
Query: 269 TGDLKITDVAFAD-----SGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP-------ED 316
+ D GEY CFARNK GTA L+ + ++ P +
Sbjct: 71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTA-----LSNRIRLQVSKSPLWPKENLDP 125
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIV-WLRGS-EPIDFESEPRFVQSNDYSLTVTKSSEL 374
V+ G T +CN P L ++ W+ S EPI + R Q ++ L +
Sbjct: 126 VVVQEGAPLTLQCNP--PPGLPSPVIFWMSSSMEPI--TQDKRVSQGHNGDLYFSNVMLQ 181
Query: 375 D-SGQYTCRAQTELDF-IEAQATLTVQV 400
D Y+C A+ I+ + T++V
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKV 209
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 10/187 (5%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPIN--PSDRISQGNY--GKS 88
P QYV+ K +A ++C++G P+ + K+G +N P DRI++ N GK
Sbjct: 213 PVPQYVS-KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE-FINAAEEETVTFEC 147
L+ K D+G YTCEV NGVG+ + +S+ L+V++AP + +PE I + + VT C
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPC 331
Query: 148 KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
K +GLP P + W HN KP+S R V + + I+ ++ D G YGC ATN G Y
Sbjct: 332 KVTGLPAPNVVWSHNAKPLSGG----RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKY 387
Query: 208 KDVYVNV 214
+ V V
Sbjct: 388 FETLVQV 394
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 108/275 (39%), Gaps = 29/275 (10%)
Query: 46 LRNKKVELFCIF-GGTPLPQTIWSKDGVPINPS-------DRISQGNYGKSL--IIKHVE 95
+ + +L C+ P P W K +P+ RI+ G G I+ +
Sbjct: 113 IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKED 172
Query: 96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLAA------------PYFTVEPEFINAAEEETV 143
SD Y C N + + ++ + P + V + + A + T+
Sbjct: 173 VSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTM 231
Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNP---RRKVGPNRITIENLRKSDTGNYGCNAT 200
+ C P ++ NGK ++ P + + R+ + D G Y C
Sbjct: 232 IY-CMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCRVFGAPKPEVNWIHNQKEL 259
N +G K + AP+ + P+ V G+ V + C+V G P P V W HN K L
Sbjct: 291 NGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL 350
Query: 260 TGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
+GGR T+ ++G L I V D G Y C A N+ G
Sbjct: 351 SGGRATVTDSG-LVIKGVKNGDKGYYGCRATNEHG 384
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 140/386 (36%), Gaps = 60/386 (15%)
Query: 43 EVALR-NKKVELFCIFGGTPLP-QTIWSKDGVPIN-----PSDRISQGNYGKSLIIKHVE 95
EV R N L CI G + W KDG N + R +G SL+ +
Sbjct: 15 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG----SLVFLRPQ 70
Query: 96 FSDQGSYTCEVSNGVGEAKSYSIDLS---VLAAPYFTVEPEFINAAEEETVTFECKA-SG 151
SD+G Y C G A S I ++A+P T E I E +C +
Sbjct: 71 ASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI---EGRPFQLDCVLPNA 127
Query: 152 LPEPEIHWVHNGKPISQAPPNP-------RRKVGPNR------ITIENLRKSDTGNYGCN 198
P+P I W K +S A PN R GP+ +T E++ SD Y C
Sbjct: 128 YPKPLITW---KKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV--SDIYKYVCT 182
Query: 199 ATNS--------LGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVLTCRVFGAPKP 248
A N+ + Y K V + + P KD G ++ C P
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMG 242
Query: 249 EVNWIHNQKELTGG------RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGS 301
N+ N K++ G R+ L D G YTC N +G Q S
Sbjct: 243 YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 302
Query: 302 LTVKEHTHITDQPED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ 360
LTV +PE V+ GQ T C P+ ++VW ++P+ S R
Sbjct: 303 LTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPA--PNVVWSHNAKPL---SGGRATV 357
Query: 361 SNDYSLTVTKSSELDSGQYTCRAQTE 386
+ D L + D G Y CRA E
Sbjct: 358 T-DSGLVIKGVKNGDKGYYGCRATNE 382
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLII 91
APK + K V + + V + C G P P +WS + P++ R + + G L+I
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVTDSG--LVI 364
Query: 92 KHVEFSDQGSYTCEVSNGVGE 112
K V+ D+G Y C +N G+
Sbjct: 365 KGVKNGDKGYYGCRATNEHGD 385
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 160/361 (44%), Gaps = 28/361 (7%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI-------IKHVEFSDQGSYTCEVS 107
C GT + W+KD I P GNY +L+ + V D G YTC S
Sbjct: 219 CHVTGTAPIKITWAKDNREIRPG-----GNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 273
Query: 108 NGVGEAKSYSIDLSVLAAPYFT--VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
N G+ S S L V P F +EP I +E T +ECK G PE ++ W +
Sbjct: 274 NVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT-RYECKIGGSPEIKVLWYKDETE 331
Query: 166 ISQAPPNPRRKVGPNRITIE--NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
I Q R + +E NL D+G+Y C A N+ G + V P +
Sbjct: 332 I-QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-KEPPVFRK 389
Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDVAF 279
P T+ G V L C + G P +V+W +++EL +G +Y I+ + I +V
Sbjct: 390 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 449
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKL 339
AD GEY C A N +G+ GS+T+K + D G+ + A + + +
Sbjct: 450 ADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQ--ATIEGAEPI 507
Query: 340 SIVWLRGSEPIDFESEPRFV--QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
S+ W + I ES+ ++ N +L +++ ++G+YTC+ + E E ATL+
Sbjct: 508 SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Query: 398 V 398
V
Sbjct: 568 V 568
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 121/290 (41%), Gaps = 13/290 (4%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNR 181
+ PYF E + AA E +T +CK G PE I W + AP + K
Sbjct: 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVLT 239
+ I + SD G Y C A NS+G V + + P KD + G V
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 240 CRVFGAPKPEVNWIHNQKELTGGRYT----ILETGDLKITDVAFADSGEYTCFARNKLGT 295
CR+ G+ +V+W + + L I L+I + G+Y C A N LGT
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 296 AQGSGSLTVKEHT---HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
A S LT+ EH +P ++ G+S TF+C+ +K I W + + I
Sbjct: 183 ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK--ITWAKDNREIRP 240
Query: 353 ESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ + N +LTV K ++ D+GQYTC A A L VQ P
Sbjct: 241 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 290
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 162/374 (43%), Gaps = 35/374 (9%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPIN--PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
+ L C GTP + W K+ + P+ ++ N SL+I V+ SD G YTC+ N
Sbjct: 23 ITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE--ET----VTFECKASGLPEPEIHWVHN 162
VG S +VL + P F ++ ET V FEC+ +G ++ W +
Sbjct: 83 SVGAVASS----AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD 138
Query: 163 GKPISQAPPNPRRKVGPNRITIENLR--KSDTGNYGCNATNSLGYVYKDVYVNVLAHA-- 218
G+ + + N + N T++ L+ +S G Y C+A+N LG + + H
Sbjct: 139 GE-LLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRY--TILE-TGDLKI 274
P P G++ C V G ++ W + +E+ GG Y T++E T L +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRCNAVS 333
V D+G+YTC+A N G S L V+E + E V+ + + C
Sbjct: 258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 317
Query: 334 DPSLKLSIVWLRGSEPIDFESEPR--FVQS----NDYSLTVTKSSELDSGQYTCRAQTEL 387
P +K ++W + I S+ R FV+S Y+L+V DSG YTC A
Sbjct: 318 SPEIK--VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE-----DSGDYTCEAHNAA 370
Query: 388 DFIEAQATLTVQVP 401
+ +L V+ P
Sbjct: 371 GSASSSTSLKVKEP 384
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 18/364 (4%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQ---GSYTCEVS 107
V C G+ Q W KDG + D Q ++ ++ + +DQ G Y C S
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLK-DDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS 177
Query: 108 NGVGEAKSYSIDLSVL---AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
N +G A S S L++ P+F ++P ++ A E+ TF+C +G +I W + +
Sbjct: 178 NPLGTASS-SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR 236
Query: 165 PISQAPPNPRRKVGPNRITIENLR--KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT 222
I + N + + N T+ L+ K D G Y C A+N G + V I
Sbjct: 237 EI-RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIK 295
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTILET-GDLKITDVA 278
+ + C++ G+P+ +V W ++ E+ + R + +E+ L++ +++
Sbjct: 296 KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLS 355
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLK 338
DSG+YTC A N G+A S SL VKE +P E G C P +
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ 415
Query: 339 LSIVWLRGSEPIDFESEPRFVQSNDY-SLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
+S W + + + + + N S+ + D G+Y C+A ++ ++T
Sbjct: 416 VS--WHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473
Query: 398 VQVP 401
++ P
Sbjct: 474 LKAP 477
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 18/264 (6%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFS--DQGSYTCEVSNGVGE 112
C GG+P + +W KD I S + +++ S D G YTCE N G
Sbjct: 313 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 372
Query: 113 AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN 172
A S + L V P F +P + + V EC+ G P ++ W + + +
Sbjct: 373 ASSST-SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG--K 429
Query: 173 PRRKVGPNRIT---IENLRKSDTGNYGCNATNSLGYVYKDVYVN--VLAHAPEITEAPKD 227
+ + N +T I N+ +D G Y C A+N +G D V L P + D
Sbjct: 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG---SDTCVGSITLKAPPRFVKKLSD 486
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF-----ADS 282
TV G+ V L + GA V W ++ E+ I + I + F A++
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANA 546
Query: 283 GEYTCFARNKLGTAQGSGSLTVKE 306
G+YTC +N+ GT + +L+V E
Sbjct: 547 GKYTCQIKNEAGTQECFATLSVLE 570
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 5/163 (3%)
Query: 46 LRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGSYT 103
L+ V L C GTP Q W KD + +I N+ S+ I +V+ +D G Y
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ 456
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
C+ SN VG +++ A P F + I+ E V + G + W +
Sbjct: 457 CKASNDVGSDTCVG-SITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK 515
Query: 164 KPISQAPPNPRRKVGPNRITIENLRK--SDTGNYGCNATNSLG 204
I + N N T++ R ++ G Y C N G
Sbjct: 516 GEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAG 558
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 125/281 (44%), Gaps = 20/281 (7%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF 96
K ++ + C G P P+ W+K G +N S R + G L I+ +
Sbjct: 14 KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRT 72
Query: 97 -SDQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECK 148
D+ Y C N VGE ++ L+VL P + P+ T T C
Sbjct: 73 PRDENVYECVAQNSVGEITVHA-KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA 131
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
ASG P+PEI W + P+ + N R +++ + IE+ ++D G Y C ATNS G Y
Sbjct: 132 ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY 191
Query: 208 K---DVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY 264
++YV V AP + P + G V +TC G+P P V W+ ++LT
Sbjct: 192 SSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD 251
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
+ L++TDV DS YTC A + LG + +TVK
Sbjct: 252 MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK 290
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 121/296 (40%), Gaps = 34/296 (11%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-------KVG 178
P F EP+ +F C+A+G P+P + W GK + N +R +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-----NSQRFETIEFDESA 61
Query: 179 PNRITIENLRK-SDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTV 231
+ I+ LR D Y C A NS+G + + VL P I P+ +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+T + C G P PE+ W + + GR L +G L+I D G+Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 288 FARNKLGTAQGS-GSLTVKEHT---HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
A N G S +L V+ + P +E+ G + C AV P + W
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVK--W 239
Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
++G+E + E + V N LT K DS YTC A + L IEA A +TV+
Sbjct: 240 MQGAEDLTPEDD-MPVGRNVLELTDVK----DSANYTCVAMSSLGVIEAVAQITVK 290
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 48/256 (18%)
Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF--VQ 360
T +E +P+D +G A+F C A DP K + W + + ++ + RF ++
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDP--KPRVTWNKKGKKVNSQ---RFETIE 56
Query: 361 SNDYSLTVTKSSEL----DSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDA 416
++ + V + L D Y C AQ + I A LTV + PS F I +
Sbjct: 57 FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ 116
Query: 417 KKAV-------------------VSW----NPVSPQSLRG---HFRGYKVQTWTEKDGEG 450
K V ++W PV P + G R +Q + ++ +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSL 510
E + +T + ++ + + RV N P I ++ E +PG ++
Sbjct: 177 GKYECV-----ATNSAGVRYSSPANLYVRV------QNVAPRFSILPMSHEIMPGGNVNI 225
Query: 511 EAIPLGSSAFYLKWVK 526
+ +GS Y+KW++
Sbjct: 226 TCVAVGSPMPYVKWMQ 241
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 159/377 (42%), Gaps = 25/377 (6%)
Query: 44 VALRNKKVELFCIF-GGTPLPQTIWSKDGV--PINPSDRISQGNYGKSLIIKHVEFS--- 97
V +R V L C +P W KDG+ + DR Q G SL+I+++ S
Sbjct: 32 VTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG-SLLIQNILHSRHH 90
Query: 98 --DQGSYTCEVSNG-VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE 154
D+G Y CE S G G S + + V F + E I A +TV +C+ G P
Sbjct: 91 KPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPM 150
Query: 155 PEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLG-YVYKDVYV 212
P IHW N + ++ P + R V P+ + I L+ D+G Y C+A N + V
Sbjct: 151 PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210
Query: 213 NVLA-----HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYT 265
+L+ + P + ++GK VL C V G P P W+ ++ +L +Y+
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS 270
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSA 325
+L +L I++V DSG YTC K S LTV + P +
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDI 330
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV-QSNDYSLTVTKSSELDSGQYTCRAQ 384
F C P ++ W++ + + + V SN L V KS D G Y C A+
Sbjct: 331 EFECAVSGKPV--PTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKS---DEGFYQCVAE 385
Query: 385 TELDFIEAQATLTVQVP 401
E ++ A L V P
Sbjct: 386 NEAGNAQSSAQLIVPKP 402
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 152/371 (40%), Gaps = 30/371 (8%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDG--VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
+KV L C P W +G + + P R + G +I V+ D GSY C
Sbjct: 23 EKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-RLVAGDLVISNPVKAKDAGSYQCVA 81
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKAS-GLPEPEIHWVHNGK 164
+N G S L F+ E + + E V F C P W+ N
Sbjct: 82 TNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEF 141
Query: 165 PISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATNSLGYVYKDVYV---------- 212
P + P + RR V + I SD GNY C AT+ + ++ K V+
Sbjct: 142 P-NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
Query: 213 NVLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD 271
+ +AP I + P D Y + G+ V L C FG P P++ W ++L G + + + +
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW----RKLDGSQTSKWLSSE 256
Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
L I +V F D G Y C A N G G + + D D E + G + C
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSC 316
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
A P + ++ WLR +P+ ++ ++ + L +K DSG Y C A+ +
Sbjct: 317 VASGKP--RPAVRWLRDGQPLASQNR---IEVSGGELRFSKLVLEDSGMYQCVAENKHGT 371
Query: 390 IEAQATLTVQV 400
+ A A LTVQ
Sbjct: 372 VYASAELTVQA 382
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 8/172 (4%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
AL + V L C G P+PQ W K ++ S + L I++V+F D+G+Y C
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRK----LDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
E N G +Y + + A P + A + + C ASG P P + W+ +G+
Sbjct: 275 EAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333
Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
P++ R +V + L D+G Y C A N G VY + V A
Sbjct: 334 PLAS---QNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 108/286 (37%), Gaps = 40/286 (13%)
Query: 126 PYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
P F +P F + EE VT C+A P W NG + P + R V + +
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCR 241
++ D G+Y C ATN+ G V E + +D + +G V+ TC
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC- 123
Query: 242 VFGAPKPE-----VNWIHNQ----KELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
+P P W+ N+ G R+ TG+L I +D G Y+CFA +
Sbjct: 124 ---SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 293 LGTAQGSG-------SLTVKEHTHITDQ-----PEDYEVEAGQSATFRCNAVSDPSLKLS 340
+ S SL ++ P D GQ T C A +P ++
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 341 IVWLRGSEPIDF-ESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQ 384
L GS+ + SEP +Q+ D+ D G Y C A+
Sbjct: 241 WRKLDGSQTSKWLSSEPLLHIQNVDFE---------DEGTYECEAE 277
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 1/173 (0%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
AP T E ++A EE TF C P+PEI W N I + +TI
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG 244
++ SD G Y C A N +G + + P+IT P + ++G VL C G
Sbjct: 67 LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMG 126
Query: 245 APKPEVNWIHNQKELT-GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA 296
PKP V+WI L R +LE+G L+I +V D+G+Y C A+N LGTA
Sbjct: 127 NPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 74/179 (41%), Gaps = 7/179 (3%)
Query: 33 PKQQYVTRKKEV--ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSL 89
PK +T E AL + C P P+ W+++ + I D R S G+ L
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA 149
I VE SD G Y C +NGVG A L V P T P + E C
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 150 SGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVY 207
G P+P + W+ + + N R V + I N++K D G Y C A NSLG Y
Sbjct: 125 MGNPKPSVSWIKGDSALRE---NSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAY 180
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQ--KELTGGRYTILETGD- 271
L AP IT + + + C V P+PE++W N+ +L RY+I E G
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 272 LKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
L I V +D G Y C A N +G A + G+L VK IT P + ++ G A C
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
+ +P K S+ W++G + S ++S SL + + D+GQY C A+ L
Sbjct: 124 TMGNP--KPSVSWIKGDSALRENSRIAVLESG--SLRIHNVQKEDAGQYRCVAKNSL 176
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
K L C G P P W K + + RI+ G SL I +V+ D G Y C N
Sbjct: 117 KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG-SLRIHNVQKEDAGQYRCVAKNS 175
Query: 110 VGEAKSYSIDLSV 122
+G A S + L V
Sbjct: 176 LGTAYSKLVKLEV 188
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 152/370 (41%), Gaps = 40/370 (10%)
Query: 51 VELFCIFGGTPLPQTIW--------SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSY 102
+ L C G P+P W K V +N DR+ Q +LIIK D G Y
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLN--DRVKQ--VSGTLIIKDAVVEDSGKY 321
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN 162
C V+N VG +S L+V A ++P F C+ +G P + W+ +
Sbjct: 322 LCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 380
Query: 163 GKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL--GYVYKDVYVNVLAHAPE 220
GK I + R IE+++K D G Y C N ++ + P
Sbjct: 381 GKAIGHSESVLR---------IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPV 431
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGD--- 271
I +A ++E G +V L C G P PE++W I N G+Y + GD
Sbjct: 432 IRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTV-NGDVVS 490
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
L IT V D G Y C A++K+G A+ S L V +I Q E + AG++ C
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCP 549
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
P SIVW R + + + + V N + D YTC A+ + +
Sbjct: 550 VAGYPI--DSIVWERDNRALPINRKQK-VFPNGTLIIENVERNSDQATYTCVAKNQEGY- 605
Query: 391 EAQATLTVQV 400
A+ +L VQV
Sbjct: 606 SARGSLEVQV 615
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 153/362 (42%), Gaps = 45/362 (12%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY-------GKSLIIKHVEFSDQGSYT 103
V L C+ GG P P+ W DG I +DR G Y L I V +D G Y
Sbjct: 447 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN 162
C + VG A+ +S L+V PY +E + I A E VT C +G P I W +
Sbjct: 507 CIAKSKVGVAE-HSAKLNVYGLPYIRQMEKKAIVAGETLIVT--CPVAGYPIDSIVWERD 563
Query: 163 GKPISQAPPNPRRKVGPN-RITIENL-RKSDTGNYGCNATNSLGYVYK---DVYVNVLAH 217
+ + P N ++KV PN + IEN+ R SD Y C A N GY + +V V VL
Sbjct: 564 NRAL---PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL-- 618
Query: 218 APEITEAPKDEYTVD-GKTVVLTCRVFGAPKP-EVNWIHNQKELT----------GGRYT 265
P I +E G+ + L C V G P ++W + + ++ G R +
Sbjct: 619 -PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGS 677
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSA 325
+ L I V + +G +TC ARN G Q + L V +P D G A
Sbjct: 678 V-----LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDA 732
Query: 326 TFRCNAVSDPSLKLSIVWLR--GSEPIDFESEPRF--VQSNDYSLTVTKSSELDSGQYTC 381
C A P K + W + G P +++ + ++ + +L V + + G Y C
Sbjct: 733 KVECKADGFP--KPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLC 790
Query: 382 RA 383
A
Sbjct: 791 EA 792
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 53 LFCIFGGTPLPQTI-WSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVSN 108
L C G LP I W+ DG I+ I+ G G L I+ VE S G++TC N
Sbjct: 639 LHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN 698
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ 168
G + ++ L+V P + +EP A+ ECKA G P+P++ W K +
Sbjct: 699 LAGH-QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW---KKAVGD 754
Query: 169 APPNPRR-------KVGPNRITIENLRKSDTGNYGCNATNSLG 204
P + +V + ++N++K++ G Y C A N +G
Sbjct: 755 TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIG 797
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 122/317 (38%), Gaps = 45/317 (14%)
Query: 125 APYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
P F EP +F N+ E ECKASG P PEI W+ + P R+
Sbjct: 38 GPVFLKEPTNRIDFSNSTGAE---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 94
Query: 181 RITIENLRKSDTGN------YGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
++ R D Y C A N G + +DV+V + + K E+ + G
Sbjct: 95 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRG 153
Query: 234 KTVVLTCRV--FGAPKPEVNWIHNQKELT-------GGRYTILETGDLKITDVAFADS-G 283
+ V+ C + F A EV H +E G+Y +L +G+L I +V D
Sbjct: 154 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 213
Query: 284 EYTCFARNKLG----TAQGSGSLTVKEHTH------ITDQPEDYEVEAGQSATFRCNAVS 333
Y C +++L + G L + E ++ D + +G S A+
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTM----ALL 269
Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQTEL 387
P+ + R + I+ + + V ND +L + + DSG+Y C +
Sbjct: 270 CPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 329
Query: 388 DFIEAQATLTVQVPLEA 404
+ LTV PL A
Sbjct: 330 GGESVETVLTVTAPLSA 346
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/396 (21%), Positives = 134/396 (33%), Gaps = 79/396 (19%)
Query: 52 ELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGS------YTC 104
E+ C G P+P+ IW + DG + + Q + L+ D Y C
Sbjct: 58 EIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 117
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVE------------------PEFI---------NA 137
N G S + + + A Y+ + P F+ +
Sbjct: 118 LARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT 177
Query: 138 AEEET----VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN---RITIENLRKS 190
EEE ++ K LP E+H R+VGP + +
Sbjct: 178 DEEENYFPGAEYDGKYLVLPSGELHI---------------REVGPEDGYKSYQCRTKHR 222
Query: 191 DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPK-DEYTVDGK-TVVLTCRVFGAPKP 248
TG +AT + + + V P++ K D T G T+ L C G P P
Sbjct: 223 LTGETRLSATKGRLVITEPISSAV----PKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP 278
Query: 249 EVNWIHNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSL 302
W + T + +L +G L I D DSG+Y C N +G L
Sbjct: 279 VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338
Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN 362
TV P V+ G+ A F C +P +S W++ + I +
Sbjct: 339 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIGH---------S 387
Query: 363 DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
+ L + + D G Y C + + + EA A L +
Sbjct: 388 ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 17/87 (19%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSD----------RISQGNYGKSLIIKHVEFS 97
+ KVE C G P PQ W K V P + R+ +G +L + +++ +
Sbjct: 731 DAKVE--CKADGFPKPQVTWKK-AVGDTPGEYKDLKKSDNIRVEEG----TLHVDNIQKT 783
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLA 124
++G Y CE NG+G S I +SV A
Sbjct: 784 NEGYYLCEAINGIGSGLSAVIMISVQA 810
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 151/369 (40%), Gaps = 26/369 (7%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDG--VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
++V L C +P W +G + + P R Q G +I+ + D G Y C
Sbjct: 22 EQVLLACRARASPPATYRWKMNGTEMKLEPGSR-HQLVGGNLVIMNPTKAQDAGVYQCLA 80
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKA-SGLPEPEIHWVHNGK 164
SN VG S L F+ E + + A E V C + P W+ N
Sbjct: 81 SNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYRWLLNEF 140
Query: 165 PISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATNSLGYVYKDVY-----VNVLAH 217
P + P + R V + I SD GNY C AT+ + + K V+ +N+ A
Sbjct: 141 P-NFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAE 199
Query: 218 -----APEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD 271
AP I P + Y + G+ V L C FG P P + W L+ ++T E
Sbjct: 200 DTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP-QWTTAEP-T 257
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
L+I V+F D G Y C A N G G + V+ D E + G + + C A
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAA 317
Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
P + ++ WLR EP+ ++ + + L +K S DSG Y C A+ + I
Sbjct: 318 AGKP--RPTVRWLRNGEPLASQNRVEVLAGD---LRFSKLSLEDSGMYQCVAENKHGTIY 372
Query: 392 AQATLTVQV 400
A A L VQ
Sbjct: 373 ASAELAVQA 381
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
AL ++V L C G P+P+ W K ++P ++ +L I V F D+G+Y C
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAE----PTLQIPSVSFEDEGTYEC 273
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
E N G + + V A P + A + + C A+G P P + W+ NG+
Sbjct: 274 EAENSKGR-DTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGE 332
Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
P++ R +V + L D+G Y C A N G +Y + V A
Sbjct: 333 PLAS---QNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 109/288 (37%), Gaps = 31/288 (10%)
Query: 134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTG 193
F + EE V C+A P W NG + P + + VG N + + + D G
Sbjct: 15 FPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAG 74
Query: 194 NYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCRVFGA-PKPEVN 251
Y C A+N +G V + E ++ +D +G V+L C P
Sbjct: 75 VYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYR 134
Query: 252 WIHNQKE---LTGGRYTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
W+ N+ T GR+ + + TG+L I +D G Y+C A + + + S +
Sbjct: 135 WLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKS---VFSKF 191
Query: 308 THITDQPEDYEVEA---------------GQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
+ ED + A GQ T C A +P + I W + +D
Sbjct: 192 AQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPR--IKWRK----VDG 245
Query: 353 ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
P++ + + +L + S D G Y C A+ Q + VQ
Sbjct: 246 SLSPQWTTA-EPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQA 292
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 120/266 (45%), Gaps = 24/266 (9%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI-------IKHVEFSDQGSYTCEVS 107
C GT + W+KD I P GNY +L+ + V D G YTC S
Sbjct: 27 CHVTGTAPIKITWAKDNREIRPG-----GNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 108 NGVGEAKSYSIDLSVLAAPYFT--VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
N G+ S S L V A P F +EP I +E T +ECK G PE ++ W +
Sbjct: 82 NVAGK-DSCSAQLGVQAPPRFIKKLEPSRIVKQDEHT-RYECKIGGSPEIKVLWYKDETE 139
Query: 166 ISQAPPNPRRKVGPNRITIE--NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
I Q R + +E NL D+G+Y C A N+ G + V P +
Sbjct: 140 I-QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-KEPPVFRK 197
Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDVAF 279
P T+ G V L C + G P +V+W +++EL +G +Y I+ + I +V
Sbjct: 198 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 257
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVK 305
AD GEY C A N +G+ GS+T+K
Sbjct: 258 ADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 10/284 (3%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
+A P+F ++P ++ A E+ TF+C +G +I W + + I N + + N
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTA 61
Query: 183 TIENLR--KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
T+ L+ K D G Y C A+N G + V A I + + C
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 241 RVFGAPKPEVNWIHNQKEL---TGGRYTILET-GDLKITDVAFADSGEYTCFARNKLGTA 296
++ G+P+ +V W ++ E+ + R + +E+ L++ +++ DSG+YTC A N G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
S SL VKE +P E G C P ++S W + + +
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS--WHKDKRELRSGKKY 239
Query: 357 RFVQSNDY-SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ + N S+ + D G+Y C+A ++ ++T++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 18/180 (10%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRY--TILE-TGDLKITDVAFADSGEYTCF 288
G++ C V G ++ W + +E+ GG Y T++E T L + V D+G+YTC+
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRCNAVSDPSLKLSIVWLRGS 347
A N G S L V+ + E V+ + + C P +K ++W +
Sbjct: 80 ASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK--VLWYKDE 137
Query: 348 EPIDFESEPR--FVQS----NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
I S+ R FV+S Y+L+V DSG YTC A + +L V+ P
Sbjct: 138 TEIQESSKFRMSFVESVAVLEMYNLSVE-----DSGDYTCEAHNAAGSASSSTSLKVKEP 192
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKS 371
+P ++ G+S TF+C+ +K I W + + I + + N +LTV K
Sbjct: 11 KPVSVDLALGESGTFKCHVTGTAPIK--ITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 372 SELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNF 408
++ D+GQYTC A + + + + Q+ ++AP F
Sbjct: 69 TKGDAGQYTCYASN----VAGKDSCSAQLGVQAPPRF 101
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 46 LRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGSYT 103
L+ V L C GTP Q W KD + +I N+ S+ I +V+ +D G Y
Sbjct: 205 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ 264
Query: 104 CEVSNGVG 111
C+ SN VG
Sbjct: 265 CKASNDVG 272
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 119/266 (44%), Gaps = 24/266 (9%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI-------IKHVEFSDQGSYTCEVS 107
C GT + W+KD I P GNY +L+ + V D G YTC S
Sbjct: 27 CHVTGTAPIKITWAKDNREIRPG-----GNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 108 NGVGEAKSYSIDLSVLAAPYFT--VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
N G+ S S L V P F +EP I +E T +ECK G PE ++ W +
Sbjct: 82 NVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT-RYECKIGGSPEIKVLWYKDETE 139
Query: 166 ISQAPPNPRRKVGPNRITIE--NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
I Q R + +E NL D+G+Y C A N+ G + V P +
Sbjct: 140 I-QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-KEPPVFRK 197
Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDVAF 279
P T+ G V L C + G P +V+W +++EL +G +Y I+ + I +V
Sbjct: 198 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 257
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVK 305
AD GEY C A N +G+ GS+T+K
Sbjct: 258 ADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 10/284 (3%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
+A P+F ++P ++ A E+ TF+C +G +I W + + I N + + N
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTA 61
Query: 183 TIENLR--KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
T+ L+ K D G Y C A+N G + V I + + C
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 241 RVFGAPKPEVNWIHNQKEL---TGGRYTILET-GDLKITDVAFADSGEYTCFARNKLGTA 296
++ G+P+ +V W ++ E+ + R + +E+ L++ +++ DSG+YTC A N G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
S SL VKE +P E G C P ++S W + + +
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS--WHKDKRELRSGKKY 239
Query: 357 RFVQSNDY-SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ + N S+ + D G+Y C+A ++ ++T++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 18/180 (10%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRY--TILE-TGDLKITDVAFADSGEYTCF 288
G++ C V G ++ W + +E+ GG Y T++E T L + V D+G+YTC+
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRCNAVSDPSLKLSIVWLRGS 347
A N G S L V+E + E V+ + + C P +K ++W +
Sbjct: 80 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK--VLWYKDE 137
Query: 348 EPIDFESEPR--FVQS----NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
I S+ R FV+S Y+L+V DSG YTC A + +L V+ P
Sbjct: 138 TEIQESSKFRMSFVESVAVLEMYNLSVE-----DSGDYTCEAHNAAGSASSSTSLKVKEP 192
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 46 LRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGSYT 103
L+ V L C GTP Q W KD + +I N+ S+ I +V+ +D G Y
Sbjct: 205 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ 264
Query: 104 CEVSNGVG 111
C+ SN VG
Sbjct: 265 CKASNDVG 272
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKS 371
+P ++ G+S TF+C+ +K I W + + I + + N +LTV K
Sbjct: 11 KPVSVDLALGESGTFKCHVTGTAPIK--ITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 372 SELDSGQYTCRAQTELDFIEAQATLTVQVP 401
++ D+GQYTC A A L VQ P
Sbjct: 69 TKGDAGQYTCYASNVAGKDSCSAQLGVQEP 98
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 100/228 (43%), Gaps = 15/228 (6%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA---------APYFTVE-PEFINA 137
+L I VE SD G+YTC V+N V K ++ P V+ PE + A
Sbjct: 157 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 216
Query: 138 AEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYG 196
+ TV EC A G P P I W +GKPI++ RR + I N ++ D G+Y
Sbjct: 217 EKGTTVKLECFALGNPVPTILWRRADGKPIAR---KARRHKSNGILEIPNFQQEDAGSYE 273
Query: 197 CNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQ 256
C A NS G + A P + D + ++V C+ G PKP W+ N
Sbjct: 274 CVAENSRGKNVAKGQLTFYAQ-PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG 332
Query: 257 KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L +E G L IT V +D+G Y C A NK G S L+V
Sbjct: 333 DPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 141/369 (38%), Gaps = 30/369 (8%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHV-EFSDQGSYTCEVS 107
KKV+L C G P P W +G ++ SL+I + + D G+Y C +
Sbjct: 23 KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT 82
Query: 108 NGVGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGLP----EPEIHWVHN 162
N G S L F T ++ + + C G P E W+ N
Sbjct: 83 NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC---GPPPHSGELSYAWIFN 139
Query: 163 GKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATNS------LGYVYKDVYVN- 213
P Q + RR V + I + KSD GNY C TN+ LG + N
Sbjct: 140 EYPSYQ---DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 196
Query: 214 --VLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILET 269
+ + P+I + P+ G TV L C G P P + W + K +
Sbjct: 197 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN 256
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
G L+I + D+G Y C A N G G LT + D V +S + C
Sbjct: 257 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC 316
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
A P K + WL+ +P+ +Q +L +T + D+G Y C A+ +
Sbjct: 317 KANGRP--KPTYRWLKNGDPLLTRDR---IQIEQGTLNITIVNLSDAGMYQCVAENKHGV 371
Query: 390 IEAQATLTV 398
I + A L+V
Sbjct: 372 IFSSAELSV 380
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
A + V+L C G P+P +W + DG PI R + N L I + + D GSY
Sbjct: 216 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN--GILEIPNFQQEDAGSYE 273
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
C N G+ + L+ A P + I+ A EE+V +ECKA+G P+P W+ NG
Sbjct: 274 CVAENSRGKNVAKG-QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG 332
Query: 164 KPISQAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
P+ R ++ G ITI NL SD G Y C A N G ++ ++V+A
Sbjct: 333 DPLLT-----RDRIQIEQGTLNITIVNL--SDAGMYQCVAENKHGVIFSSAELSVIA 382
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 116/298 (38%), Gaps = 34/298 (11%)
Query: 124 AAPYFTVEPEFIN---AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
+ P F EP + +EE+ V C+ G P+P I W NG + + R V
Sbjct: 3 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-MDFRYSVVDG 61
Query: 181 RITIENLRKS-DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVL 238
+ I N K+ D G Y C ATNS G + A+ + +V G+ +VL
Sbjct: 62 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 121
Query: 239 TCRVFGAPKPEVN-----WIHNQ--KELTGGRYTILETGDLKITDVAFADSGEYTCFARN 291
C P P WI N+ R+ ETG+L I V +D G YTC N
Sbjct: 122 LC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTN 177
Query: 292 K------LG-----TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
LG + G + E PE E G + C A+ +P +
Sbjct: 178 TVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV--PT 235
Query: 341 IVWLRGS-EPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
I+W R +PI + R +SN L + + D+G Y C A+ A+ LT
Sbjct: 236 ILWRRADGKPI--ARKARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 290
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 100/228 (43%), Gaps = 15/228 (6%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA---------APYFTVE-PEFINA 137
+L I VE SD G+YTC V+N V K ++ P V+ PE + A
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 138 AEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYG 196
+ TV EC A G P P I W +GKPI++ RR + I N ++ D G+Y
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIAR---KARRHKSNGILEIPNFQQEDAGSYE 274
Query: 197 CNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQ 256
C A NS G + A P + D + ++V C+ G PKP W+ N
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQ-PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG 333
Query: 257 KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L +E G L IT V +D+G Y C A NK G S L+V
Sbjct: 334 DPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 141/369 (38%), Gaps = 30/369 (8%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHV-EFSDQGSYTCEVS 107
KKV+L C G P P W +G ++ SL+I + + D G+Y C +
Sbjct: 24 KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT 83
Query: 108 NGVGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGLP----EPEIHWVHN 162
N G S L F T ++ + + C G P E W+ N
Sbjct: 84 NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC---GPPPHSGELSYAWIFN 140
Query: 163 GKPISQAPPNPRRKVGP--NRITIENLRKSDTGNYGCNATNS------LGYVYKDVYVN- 213
P Q + RR V + I + KSD GNY C TN+ LG + N
Sbjct: 141 EYPSYQ---DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 197
Query: 214 --VLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILET 269
+ + P+I + P+ G TV L C G P P + W + K +
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN 257
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
G L+I + D+G Y C A N G G LT + D V +S + C
Sbjct: 258 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC 317
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
A P K + WL+ +P+ +Q +L +T + D+G Y C A+ +
Sbjct: 318 KANGRP--KPTYRWLKNGDPLLTRDR---IQIEQGTLNITIVNLSDAGMYQCVAENKHGV 372
Query: 390 IEAQATLTV 398
I + A L+V
Sbjct: 373 IFSSAELSV 381
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
A + V+L C G P+P +W + DG PI R + N L I + + D GSY
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN--GILEIPNFQQEDAGSYE 274
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
C N G+ + L+ A P + I+ A EE+V +ECKA+G P+P W+ NG
Sbjct: 275 CVAENSRGKNVAKG-QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG 333
Query: 164 KPISQAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
P+ R ++ G ITI NL SD G Y C A N G ++ ++V+A
Sbjct: 334 DPLLT-----RDRIQIEQGTLNITIVNL--SDAGMYQCVAENKHGVIFSSAELSVIA 383
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 115/298 (38%), Gaps = 34/298 (11%)
Query: 124 AAPYFTVEPEFIN---AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
+ P F EP + +EE+ V C+ G P+P I W NG + + R V
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-MDFRYSVVDG 62
Query: 181 RITIENLRKS-DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVL 238
+ I N K+ D G Y C ATNS G + A+ + +V G+ +VL
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 239 TCRVFGAPKPEVN-----WIHNQ--KELTGGRYTILETGDLKITDVAFADSGEYTCFARN 291
C P P WI N+ R+ ETG+L I V +D G YTC N
Sbjct: 123 LC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTN 178
Query: 292 KLGT-----------AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
+ + G + E PE E G + C A+ +P +
Sbjct: 179 TVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV--PT 236
Query: 341 IVWLRGS-EPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
I+W R +PI + R +SN L + + D+G Y C A+ A+ LT
Sbjct: 237 ILWRRADGKPI--ARKARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 124/293 (42%), Gaps = 61/293 (20%)
Query: 65 TIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC----------EVSNGVGEAK 114
T+W KDG + PS+R+ G + L + + D G+Y+C S V +A
Sbjct: 41 TVWVKDGTGLVPSERVLVGP--QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAP 98
Query: 115 SYSIDLSVL----------AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWV 160
S D APY+T ++ + + TV F C A+G P P I W+
Sbjct: 99 SSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWL 158
Query: 161 HNGKPISQAPPNPRRKVGPNRI-------TIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
NG+ ++G ++ +E++ SD GNY C N G + + ++
Sbjct: 159 KNGREF-----RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213
Query: 214 VLAHAPE--ITEA--PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY----- 264
VL +P I +A P ++ V G V C+V+ +P + W+ E+ G +
Sbjct: 214 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL-KHVEVNGSKVGPDGT 272
Query: 265 ---TILETGDLKITD----------VAFADSGEYTCFARNKLGTAQGSGSLTV 304
T+L+T TD V F D+GEYTC A N +G + S L V
Sbjct: 273 PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 104/297 (35%), Gaps = 71/297 (23%)
Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH- 217
WV +G + P+ R VGP R+ + N D+G Y C + + VL H
Sbjct: 43 WVKDGTGLV---PSERVLVGPQRLQVLNASHEDSGAYSCR---------QRLTQRVLCHF 90
Query: 218 APEITEAPKDEYT------------------------VDGK--------TVVLTCRVFGA 245
+ +T+AP +D K TV C G
Sbjct: 91 SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGN 150
Query: 246 PKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG 300
P P ++W+ N +E GG + L + V +D G YTC NK G+ + +
Sbjct: 151 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY 210
Query: 301 SLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE------- 348
+L V E H I P + G F C SD + I WL+ E
Sbjct: 211 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA--QPHIQWLKHVEVNGSKVG 268
Query: 349 ----PIDFESEPRFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFIEAQATLTV 398
P + + D L V + D+G+YTC A + F A L V
Sbjct: 269 PDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 23/195 (11%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK---SLIIKHVEFSDQGSYTCEVS 107
V C G P P W K+G RI SL+++ V SD+G+YTC V
Sbjct: 141 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE 200
Query: 108 NGVGEAK-SYSIDLSVLAAPYFTVE----PEFINAAEEETVTFECKASGLPEPEIHWV-H 161
N G + +Y++D+ + +P+ + P A V F CK +P I W+ H
Sbjct: 201 NKFGSIRQTYTLDV-LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKH 259
Query: 162 NGKPISQAPPNPR------RKVGPNR-------ITIENLRKSDTGNYGCNATNSLGYVYK 208
S+ P+ + G N +++ N+ D G Y C A NS+G+ +
Sbjct: 260 VEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH 319
Query: 209 DVYVNVLAHAPEITE 223
++ VL E+ E
Sbjct: 320 SAWLVVLPAEEELVE 334
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 39/215 (18%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E + +TV F+C +SG P+P + W+ NGK P ++G
Sbjct: 13 APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFK-----PDHRIGGY 67
Query: 181 R-------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEY 229
+ I ++++ SD GNY C N G + ++V+ +P I +A P ++
Sbjct: 68 KVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKT 127
Query: 230 TVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD----- 276
G V C+V+ P+P + W+ E+ G + IL+T + TD
Sbjct: 128 VALGSNVEFMCKVYSDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV 186
Query: 277 -----VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
V+F D+GEYTC A N +G + S LTV E
Sbjct: 187 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 221
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-----SLIIKHVEFSDQGSYT 103
K V+ C GTP P W K+G P RI G Y S+I+ V SD+G+YT
Sbjct: 33 KTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRI--GGYKVRYATWSIIMDSVVPSDKGNYT 90
Query: 104 CEVSNGVGEA-KSYSIDLSVLAAPYFTV----EPEFINAAEEETVTFECKASGLPEPEIH 158
C V N G +Y +D+ V +P+ + P A V F CK P+P I
Sbjct: 91 CIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQ 149
Query: 159 WVH----NGKPISQAPPNP-----RRKVGPNR-------ITIENLRKSDTGNYGCNATNS 202
W+ NG I P N + G N + + N+ D G Y C A NS
Sbjct: 150 WLKHIEVNGSKI--GPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 207
Query: 203 LGYVYKDVYVNVL 215
+G + ++ VL
Sbjct: 208 IGLSHHSAWLTVL 220
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 77/195 (39%), Gaps = 26/195 (13%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTC 287
KTV C G P+P + W+ N KE GG T + + V +D G YTC
Sbjct: 32 AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 91
Query: 288 FARNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
N+ G+ + L V E H I P + V G + F C SDP + I
Sbjct: 92 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDP--QPHIQ 149
Query: 343 WLRGSE----PIDFESEPRF-------VQSNDYSLTVTKSSEL---DSGQYTCRAQTELD 388
WL+ E I ++ P V + D + V + D+G+YTC A +
Sbjct: 150 WLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209
Query: 389 FIEAQATLTVQVPLE 403
A LTV LE
Sbjct: 210 LSHHSAWLTVLEALE 224
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 39/216 (18%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
APY+T +E + +TV F+C +SG P+P + W+ NGK P ++G
Sbjct: 11 VAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFK-----PDHRIGG 65
Query: 180 NR-------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDE 228
+ I ++++ SD GNY C N G + ++V+ +P I +A P ++
Sbjct: 66 YKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANK 125
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---- 276
G V C+V+ P+P + W+ E+ G + IL+T + TD
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 277 ------VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
V+F D+GEYTC A N +G + S LTV E
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-----SLIIKHVEFSDQGSYT 103
K V+ C GTP P W K+G P RI G Y S+I+ V SD+G+YT
Sbjct: 32 KTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRI--GGYKVRYATWSIIMDSVVPSDKGNYT 89
Query: 104 CEVSNGVGEA-KSYSIDLSVLAAPYFTV----EPEFINAAEEETVTFECKASGLPEPEIH 158
C V N G +Y +D+ V +P+ + P A V F CK P+P I
Sbjct: 90 CIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQ 148
Query: 159 WVH----NGKPISQAPPNP-----RRKVGPNR-------ITIENLRKSDTGNYGCNATNS 202
W+ NG I P N + G N + + N+ D G Y C A NS
Sbjct: 149 WLKHIEVNGSKI--GPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Query: 203 LGYVYKDVYVNVL 215
+G + ++ VL
Sbjct: 207 IGLSHHSAWLTVL 219
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 77/195 (39%), Gaps = 26/195 (13%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTC 287
KTV C G P+P + W+ N KE GG T + + V +D G YTC
Sbjct: 31 AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 288 FARNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
N+ G+ + L V E H I P + V G + F C SDP + I
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDP--QPHIQ 148
Query: 343 WLRGSE----PIDFESEPRF-------VQSNDYSLTVTKSSEL---DSGQYTCRAQTELD 388
WL+ E I ++ P V + D + V + D+G+YTC A +
Sbjct: 149 WLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 389 FIEAQATLTVQVPLE 403
A LTV LE
Sbjct: 209 LSHHSAWLTVLEALE 223
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 39/216 (18%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
APY+T +E + +TV F+C +SG P P + W+ NGK P ++G
Sbjct: 11 VAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFK-----PDHRIGG 65
Query: 180 NR-------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDE 228
+ I ++++ SD GNY C N G + ++V+ +P I +A P ++
Sbjct: 66 YKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANK 125
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---- 276
G V C+V+ P+P + W+ E+ G + IL+T + TD
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 277 ------VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
V+F D+GEYTC A N +G + S LTV E
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-----SLIIKHVEFSDQGSYT 103
K V+ C GTP P W K+G P RI G Y S+I+ V SD+G+YT
Sbjct: 32 KTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRI--GGYKVRYATWSIIMDSVVPSDKGNYT 89
Query: 104 CEVSNGVGEA-KSYSIDLSVLAAPYFTV----EPEFINAAEEETVTFECKASGLPEPEIH 158
C V N G +Y +D+ V +P+ + P A V F CK P+P I
Sbjct: 90 CIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQ 148
Query: 159 WVH----NGKPISQAPPNP-----RRKVGPNR-------ITIENLRKSDTGNYGCNATNS 202
W+ NG I P N + G N + + N+ D G Y C A NS
Sbjct: 149 WLKHIEVNGSKI--GPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Query: 203 LGYVYKDVYVNVL 215
+G + ++ VL
Sbjct: 207 IGLSHHSAWLTVL 219
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 76/195 (38%), Gaps = 26/195 (13%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTC 287
KTV C G P P + W+ N KE GG T + + V +D G YTC
Sbjct: 31 AKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 288 FARNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
N+ G+ + L V E H I P + V G + F C SDP + I
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDP--QPHIQ 148
Query: 343 WLRGSE----PIDFESEPRF-------VQSNDYSLTVTKSSEL---DSGQYTCRAQTELD 388
WL+ E I ++ P V + D + V + D+G+YTC A +
Sbjct: 149 WLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 389 FIEAQATLTVQVPLE 403
A LTV LE
Sbjct: 209 LSHHSAWLTVLEALE 223
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 18/196 (9%)
Query: 124 AAPYFTVEPEFINAAEE--ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN- 180
+ P ++ + NA E E +TF C+ASG PEP I W NGK I + + G N
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNT 58
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
+T+ N+ SD G Y C ATN G K ++ V P I + K+E T + V L C
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ-PHIIQL-KNETTYENGQVTLVC 116
Query: 241 RVFGAPKPEVNW---------IHNQKELTGGRYTILETG--DLKITDVAFADSGEYTCFA 289
G P PE+ W K L G + G L I DV +DSG Y C A
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Query: 290 RNKLGTAQGSGSLTVK 305
+++G Q S L ++
Sbjct: 177 ASRIGGHQKSMYLDIE 192
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
A R +++ C G+P P W ++G I +++ L ++++ SD G Y C
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 75
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH--N 162
+N GE + + L V P+ ++ + E VT C A G P PEI W +
Sbjct: 76 RATNKAGEDEKQAF-LQVFVQPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVD 133
Query: 163 GKPISQAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
G ++ + ++ G + + I++++ SD+G Y C A + +G K +Y+++
Sbjct: 134 GFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT--DVAFADSGEYTCFAR 290
G+ + +CR G+P+P ++W N K + IL+ + ++T ++ +D G Y C A
Sbjct: 19 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 78
Query: 291 NKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI 350
NK G + L V HI + E GQ T C+A +P + I W R +
Sbjct: 79 NKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQ-VTLVCDAEGEPIPE--ITWKRAVDGF 135
Query: 351 DFESEPRFV--------QSNDYSLTVTKSSELDSGQYTCRAQTEL 387
F + + Q SL + DSG+Y C A + +
Sbjct: 136 TFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINPSD-----RIS-QGNYG-KS 88
+ K E N +V L C G P+P+ W + DG D RI +G +G S
Sbjct: 99 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 158
Query: 89 LIIKHVEFSDQGSYTCEVSNGV-GEAKSYSIDL 120
L IK V+ SD G Y CE ++ + G KS +D+
Sbjct: 159 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ 378
E G+ TF C A P + +I W R + I+ E+E ++ ++ LTV D G
Sbjct: 16 AERGEEMTFSCRASGSP--EPAISWFRNGKLIE-ENEKYILKGSNTELTVRNIINSDGGP 72
Query: 379 YTCRAQTELDFIEAQATLTVQV 400
Y CRA + E QA L V V
Sbjct: 73 YVCRATNKAGEDEKQAFLQVFV 94
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 7 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 66
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
+ +E++ SD GNY C N G + +++V+ +P I +A P + TV G
Sbjct: 67 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 126
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
V C+V+ +P + WI E G +Y +L+ + TD
Sbjct: 127 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 185
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
V F D+GEYTC A N +G + S LTV
Sbjct: 186 VTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 91/214 (42%), Gaps = 26/214 (12%)
Query: 27 SQNRHAP---KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ- 82
S N+ AP + + ++ V+ C GG P+P W K+G RI
Sbjct: 2 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 61
Query: 83 --GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTV----EPEFI 135
N SLI++ V SD+G+YTC V N G +Y +D+ V +P+ + P
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSPHRPILQAGLPANA 120
Query: 136 NAAEEETVTFECKASGLPEPEIHWV-HNGKPISQAPPN--PRRKV----GPNR------- 181
+ V F CK +P I W+ H K S+ P+ P KV G N
Sbjct: 121 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEV 180
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ I N+ D G Y C A NS+G + ++ VL
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 28 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 87
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 88 ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 145
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
+ E + P V + D + V + D+G+YTC A +
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 391 EAQATLTV 398
A LTV
Sbjct: 206 FHSAWLTV 213
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
L I++V F D G YTC N +G +S L+VL AP
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIG-ISFHSAWLTVLPAP 217
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 6 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 65
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
+ +E++ SD GNY C N G + +++V+ +P I +A P + TV G
Sbjct: 66 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 125
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
V C+V+ +P + WI E G +Y +L+ + TD
Sbjct: 126 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 184
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
V F D+GEYTC A N +G + S LTV
Sbjct: 185 VTFEDAGEYTCLAGNSIGISFHSAWLTV 212
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 91/214 (42%), Gaps = 26/214 (12%)
Query: 27 SQNRHAP---KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ- 82
S N+ AP + + ++ V+ C GG P+P W K+G RI
Sbjct: 1 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 60
Query: 83 --GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVEPEFINAAE 139
N SLI++ V SD+G+YTC V N G +Y +D+ V +P+ + + A
Sbjct: 61 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSPHRPILQAGLPANA 119
Query: 140 EET----VTFECKASGLPEPEIHWV-HNGKPISQAPPN--PRRKV----GPNR------- 181
V F CK +P I W+ H K S+ P+ P KV G N
Sbjct: 120 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEV 179
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ I N+ D G Y C A NS+G + ++ VL
Sbjct: 180 LYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 213
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 27 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 86
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 87 ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 144
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
+ E + P V + D + V + D+G+YTC A +
Sbjct: 145 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Query: 391 EAQATLTV 398
A LTV
Sbjct: 205 FHSAWLTV 212
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
L I++V F D G YTC N +G +S L+VL AP
Sbjct: 180 LYIRNVTFEDAGEYTCLAGNSIG-ISFHSAWLTVLPAP 216
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 7 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 66
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
+ +E++ SD GNY C N G + +++V+ P I +A P + TV G
Sbjct: 67 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGG 126
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
V C+V+ +P + WI E G +Y +L+ + TD
Sbjct: 127 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 185
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
V F D+GEYTC A N +G + S LTV
Sbjct: 186 VTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 90/214 (42%), Gaps = 26/214 (12%)
Query: 27 SQNRHAP---KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ- 82
S N+ AP + + ++ V+ C GG P+P W K+G RI
Sbjct: 2 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 61
Query: 83 --GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTV----EPEFI 135
N SLI++ V SD+G+YTC V N G +Y +D+ V P+ + P
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERWPHRPILQAGLPANA 120
Query: 136 NAAEEETVTFECKASGLPEPEIHWV-HNGKPISQAPPN--PRRKV----GPNR------- 181
+ V F CK +P I W+ H K S+ P+ P KV G N
Sbjct: 121 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEV 180
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ I N+ D G Y C A NS+G + ++ VL
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 28 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 87
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 88 ENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 145
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
+ E + P V + D + V + D+G+YTC A +
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 391 EAQATLTV 398
A LTV
Sbjct: 206 FHSAWLTV 213
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
L I++V F D G YTC N +G +S L+VL AP
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIG-ISFHSAWLTVLPAP 217
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 7 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 66
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEA-PKDEYTVDGK 234
+ +E++ SD GNY C N G + +++V+ H P + P + TV G
Sbjct: 67 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 126
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
V C+V+ +P + WI E G +Y +L+ + TD
Sbjct: 127 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 185
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
V F D+GEYTC A N +G + S LTV
Sbjct: 186 VTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 21/186 (11%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V+ C GG P+P W K+G RI N SLI++ V SD+G+YTC V
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 108 NGVGEA-KSYSIDLSVLAAPYFTVE---PEFINAAEEETVTFECKASGLPEPEIHWV-HN 162
N G +Y +D+ + ++ P + V F CK +P I W+ H
Sbjct: 89 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 163 GKPISQAPPN--PRRKV----GPNR-------ITIENLRKSDTGNYGCNATNSLGYVYKD 209
K S+ P+ P KV G N + I N+ D G Y C A NS+G +
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHS 208
Query: 210 VYVNVL 215
++ VL
Sbjct: 209 AWLTVL 214
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 71/195 (36%), Gaps = 29/195 (14%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 28 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 87
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 88 ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA--QPHIQWI 145
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
+ E + P V + D + V + D+G+YTC A +
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 391 EAQATLTVQVPLEAP 405
A LTV L AP
Sbjct: 206 FHSAWLTV---LPAP 217
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 26/119 (21%)
Query: 28 QNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-----------DGVP--- 73
++RH P Q + VE C P W K DG+P
Sbjct: 105 RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK 164
Query: 74 ------INPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
+N +D+ + L I++V F D G YTC N +G +S L+VL AP
Sbjct: 165 VLKAAGVNTTDKEIE-----VLYIRNVTFEDAGEYTCLAGNSIG-ISFHSAWLTVLPAP 217
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 5 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 64
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEA-PKDEYTVDGK 234
+ +E++ SD GNY C N G + +++V+ H P + P + TV G
Sbjct: 65 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 124
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
V C+V+ +P + WI E G +Y +L+ + TD
Sbjct: 125 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 183
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
V F D+GEYTC A N +G + S LTV
Sbjct: 184 VTFEDAGEYTCLAGNSIGISFHSAWLTV 211
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 21/186 (11%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V+ C GG P+P W K+G RI N SLI++ V SD+G+YTC V
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 86
Query: 108 NGVGEA-KSYSIDLSVLAAPYFTVE---PEFINAAEEETVTFECKASGLPEPEIHWV-HN 162
N G +Y +D+ + ++ P + V F CK +P I W+ H
Sbjct: 87 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 146
Query: 163 GKPISQAPPN--PRRKV----GPNR-------ITIENLRKSDTGNYGCNATNSLGYVYKD 209
K S+ P+ P KV G N + I N+ D G Y C A NS+G +
Sbjct: 147 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHS 206
Query: 210 VYVNVL 215
++ VL
Sbjct: 207 AWLTVL 212
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 26 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 85
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 86 ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA--QPHIQWI 143
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
+ E + P V + D + V + D+G+YTC A +
Sbjct: 144 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Query: 391 EAQATLTV 398
A LTV
Sbjct: 204 FHSAWLTV 211
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 26/119 (21%)
Query: 28 QNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-----------DGVP--- 73
++RH P Q + VE C P W K DG+P
Sbjct: 103 RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK 162
Query: 74 ------INPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
+N +D+ + L I++V F D G YTC N +G +S L+VL AP
Sbjct: 163 VLKAAGVNTTDKEIE-----VLYIRNVTFEDAGEYTCLAGNSIG-ISFHSAWLTVLPAP 215
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
APY+T E TV F C A G P P W+ NGK Q KV
Sbjct: 6 GAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRN 65
Query: 180 NRITI--ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDG 233
++ E++ SD GNY C N G + +++V+ +P I +A P + TV G
Sbjct: 66 QHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVG 125
Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD--------- 276
V C+V+ +P + WI E G +Y +L+ + TD
Sbjct: 126 GDVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 277 -VAFADSGEYTCFARNKLGTAQGSGSLTV 304
V F D+GEYTC A N +G + S LTV
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V+ C GG P P W K+G RI N SLI + V SD+G+YTC V
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 88
Query: 108 NGVGEA-KSYSIDLSVLAAPYFTVE----PEFINAAEEETVTFECKASGLPEPEIHWV-H 161
N G +Y +D+ V +P+ + P + V F CK +P I W+ H
Sbjct: 89 NEYGSINHTYHLDV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 147
Query: 162 NGKPISQAPPN--PRRKV----GPNR-------ITIENLRKSDTGNYGCNATNSLGYVYK 208
K S+ P+ P KV G N + I N+ D G Y C A NS+G +
Sbjct: 148 VEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFH 207
Query: 209 DVYVNVL 215
++ VL
Sbjct: 208 SAWLTVL 214
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 66/188 (35%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P W+ N KE GG + L V +D G YTC
Sbjct: 28 TVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVV 87
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 88 ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 145
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
+ E + P V + D + V + D+G+YTC A +
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 391 EAQATLTV 398
A LTV
Sbjct: 206 FHSAWLTV 213
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
L I++V F D G YTC N +G +S L+VL A
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIG-ISFHSAWLTVLPA 216
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 131 EPEFINAAEEET------VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------G 178
+P F+ E++T +F C+A+G P+P I W+ GK +S + R +V
Sbjct: 7 KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS----SQRFEVIEFDDGA 62
Query: 179 PNRITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTV 231
+ + I+ LR + D Y C ATNSLG + ++VL P I P+ +
Sbjct: 63 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVE 122
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTC 287
G+T + C G P PE++W + + GR L +G L+I +D G+Y C
Sbjct: 123 KGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYEC 182
Query: 288 FARNKLGT 295
A N GT
Sbjct: 183 VATNSAGT 190
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P + P+D+ + G C+ G PKP + W+ K+++ R+ ++E D L+
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 274 ITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQSA 325
I + D Y C A N LG S L+V E I P+ VE G++A
Sbjct: 68 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTA 127
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
T C A +P ++S W + P+D S R Q +L + S E D G+Y C A
Sbjct: 128 TMLCAAGGNPDPEIS--WFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVA 184
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 75/178 (42%), Gaps = 15/178 (8%)
Query: 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS----QGNYGKSLIIKHVEFS- 97
+ L C G P P+ W K G ++ S R G L I+ +
Sbjct: 17 QTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDDGAGSVLRIQPLRVQR 75
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKAS 150
D+ Y C +N +GE + S LSVL P + P+ + T T C A
Sbjct: 76 DEAIYECTATNSLGEINT-SAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAG 134
Query: 151 GLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
G P+PEI W + P+ A N R +++ + IE+ +SD G Y C ATNS G Y
Sbjct: 135 GNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRY 192
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS---DRISQGNYGKSLIIKHVEFSDQ 99
+V + + + C GG P P+ W KD +P++P+ RI Q G +L I+ E SDQ
Sbjct: 119 KVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSG-ALQIESSEESDQ 177
Query: 100 GSYTCEVSNGVGEAKSYSIDLSV 122
G Y C +N G S +L V
Sbjct: 178 GKYECVATNSAGTRYSAPANLYV 200
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF--VQSNDYSLTVTKS 371
PED +G A+F C A +P K I W++ + + S RF ++ +D + +V +
Sbjct: 14 PEDQTGLSGGVASFVCQATGEP--KPRITWMKKGKKV---SSQRFEVIEFDDGAGSVLRI 68
Query: 372 SEL----DSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV 413
L D Y C A L I A L+V + PS F I +
Sbjct: 69 QPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDM 114
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 131 EPEFINAAEEET------VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------G 178
+P FI E++T +F C+A+G P+P I W+ GK +S + R +V
Sbjct: 6 KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS----SQRFEVIEFDDGA 61
Query: 179 PNRITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTV 231
+ + I+ LR + D Y C ATNSLG + ++VL P I P+ +
Sbjct: 62 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVE 121
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+T + C G P PE++W + + GR L +G L+I +D G+Y C
Sbjct: 122 KARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYEC 181
Query: 288 FARNKLGT 295
A N GT
Sbjct: 182 VATNSAGT 189
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P + P+D+ + G C+ G PKP + W+ K+++ R+ ++E D L+
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 274 ITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQSA 325
I + D Y C A N LG S L+V E I P+ VE ++A
Sbjct: 67 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
T C A +P ++S W + P+D S R Q +L + S E D G+Y C A
Sbjct: 127 TMLCAAGGNPDPEIS--WFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVA 183
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 80/188 (42%), Gaps = 18/188 (9%)
Query: 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS----QGNYGKSLIIKHVEFS- 97
+ L C G P P+ W K G ++ S R G L I+ +
Sbjct: 16 QTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDDGAGSVLRIQPLRVQR 74
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKAS 150
D+ Y C +N +GE + S LSVL P + P+ + T T C A
Sbjct: 75 DEAIYECTATNSLGEINT-SAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAG 133
Query: 151 GLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK- 208
G P+PEI W + P+ A N R +++ + IE+ +SD G Y C ATNS G Y
Sbjct: 134 GNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSA 193
Query: 209 --DVYVNV 214
++YV V
Sbjct: 194 PANLYVRV 201
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG--GRYTILET-GDL 272
AH PEI P+++ G C G P P + W N K+++G RYT+LE G +
Sbjct: 6 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 65
Query: 273 KITDV----AFADSGEYTCFARNKLGTA-QGSGSLTVKEHTH-------ITDQPEDYEVE 320
I + A D Y C A N +G A +LT+ E IT P +E
Sbjct: 66 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 125
Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
G + C A+ +P+ +I W++ +D S PR+ + + L + S E D G+Y
Sbjct: 126 VGHTVLMTCKAIGNPT--PNIYWIKNQTKVDM-SNPRYSLKDGF-LQIENSREEDQGKYE 181
Query: 381 CRAQTELDFIEAQAT-LTVQV 400
C A+ + ++AT L V+V
Sbjct: 182 CVAENSMGTEHSKATNLYVKV 202
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 85/185 (45%), Gaps = 24/185 (12%)
Query: 132 PEFINAAEEETV------TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----GPN 180
PE I + + V +F C A G P P I W NGK +S R V G +
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGT--QSRYTVLEQPGGIS 66
Query: 181 RITIENLRKS-DTGNYGCNATNSLG-YVYKDVYVNVL------AHAPEITEAPKDEYTVD 232
+ IE +R D Y C A N +G V D + + A P IT+ P
Sbjct: 67 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 126
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFAR 290
G TV++TC+ G P P + WI NQ +++ RY+ L+ G L+I + D G+Y C A
Sbjct: 127 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS-LKDGFLQIENSREEDQGKYECVAE 185
Query: 291 NKLGT 295
N +GT
Sbjct: 186 NSMGT 190
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFS-DQGSYTCEVS 107
+C G P P +W K+G ++ + + Q L I+ V D Y C
Sbjct: 28 FYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE 87
Query: 108 NGVGEAKSYSIDLSVLAA-------PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
NGVG+A S L++ P T P TV CKA G P P I+W+
Sbjct: 88 NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 147
Query: 161 HNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK---DVYVNV 214
N + + NPR + + IEN R+ D G Y C A NS+G + ++YV V
Sbjct: 148 KNQTKVDMS--NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 202
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG--GRYTILET-GDL 272
AH PEI P+++ G C G P P + W N K+++G RYT+LE G +
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 273 KITDV----AFADSGEYTCFARNKLGTA-QGSGSLTVKEHTH-------ITDQPEDYEVE 320
I + A D Y C A N +G A +LT+ E IT P +E
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
G + C A+ +P+ +I W++ +D S PR+ + + L + S E D G+Y
Sbjct: 124 VGHTVLMTCKAIGNPT--PNIYWIKNQTKVDM-SNPRYSLKDGF-LQIENSREEDQGKYE 179
Query: 381 CRAQTELDFIEAQAT-LTVQV 400
C A+ + ++AT L V+V
Sbjct: 180 CVAENSMGTEHSKATNLYVKV 200
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 85/185 (45%), Gaps = 24/185 (12%)
Query: 132 PEFINAAEEETV------TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----GPN 180
PE I + + V +F C A G P P I W NGK +S R V G +
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGT--QSRYTVLEQPGGIS 64
Query: 181 RITIENLRKS-DTGNYGCNATNSLG-YVYKDVYVNVL------AHAPEITEAPKDEYTVD 232
+ IE +R D Y C A N +G V D + + A P IT+ P
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFAR 290
G TV++TC+ G P P + WI NQ +++ RY+ L+ G L+I + D G+Y C A
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS-LKDGFLQIENSREEDQGKYECVAE 183
Query: 291 NKLGT 295
N +GT
Sbjct: 184 NSMGT 188
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFS-DQGSYTCEVS 107
+C G P P +W K+G ++ + + Q L I+ V D Y C
Sbjct: 26 FYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE 85
Query: 108 NGVGEAKSYSIDLSVLAA-------PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
NGVG+A S L++ P T P TV CKA G P P I+W+
Sbjct: 86 NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 145
Query: 161 HNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK---DVYVNV 214
N + + NPR + + IEN R+ D G Y C A NS+G + ++YV V
Sbjct: 146 KNQTKVDMS--NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 119/274 (43%), Gaps = 23/274 (8%)
Query: 141 ETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVG-PNRITIENLRKSDTGNYGCN 198
E+ F C A G PE I W + G+ I +K G +R+TI N D G Y C
Sbjct: 20 ESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
AT++ G + V + E + G+ + CRV +P P V+W+++ +E
Sbjct: 79 ATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEE 138
Query: 259 LT---GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
+T R+ +L +L+I ++ +D G Y C R + G + ++ I + P
Sbjct: 139 VTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR-----VEARGEIDFRDIIVIVNVPP 193
Query: 316 DYEV---------EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
+ E G+ TF C A P +S W R + I+ E+E ++ ++ L
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAIS--WFRNGKLIE-ENEKYILKGSNTEL 250
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
TV D G Y CRA + E QA L V V
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 15/261 (5%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGE 112
C G P ++ G I + R+ G L I + D G Y C+ ++ G+
Sbjct: 26 CTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 85
Query: 113 AKSYSIDLSVLAAPYF--TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP 170
+ ++ L + F V P+ E+ V C+ S P P + W+++ + ++
Sbjct: 86 TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV--CRVSSSPAPAVSWLYHNEEVTTIS 143
Query: 171 PNPRRKVGPNRITIENLRKSDTGNYGCNA-TNSLGYV-YKDVYVNVLAHAPEITEAPKDE 228
N + N + I N+ KSD G Y C + G + ++D+ V + + P P+
Sbjct: 144 DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV--IVNVPPAISMPQKS 201
Query: 229 YTVD---GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE--TGDLKITDVAFADSG 283
+ G+ + +CR G+P+P ++W N K + IL+ +L + ++ +D G
Sbjct: 202 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGG 261
Query: 284 EYTCFARNKLGTAQGSGSLTV 304
Y C A NK G + L V
Sbjct: 262 PYVCRATNKAGEDEKQAFLQV 282
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
A R +++ C G+P P W ++G I +++ L ++++ SD G Y C
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 265
Query: 105 EVSNGVGE 112
+N GE
Sbjct: 266 RATNKAGE 273
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 27/206 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 15 APYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
+ +E++ SD GNY C N G + +++V+ +P I +A P + TV G
Sbjct: 75 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 134
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGD--------LKITDVA 278
V C+V+ +P + WI E G +Y +L+ L + +V
Sbjct: 135 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
AD+GEY C N +G A S LTV
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTV 219
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 30/215 (13%)
Query: 27 SQNRHAPKQQYVTRKKEVALRNKKVELF------CIFGGTPLPQTIWSKDGVPINPSDRI 80
S N+ AP Y T +++ R V F C GG P+P W K+G RI
Sbjct: 10 SNNKRAP---YWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI 66
Query: 81 SQ---GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYFTVEPEFIN 136
N SLI++ V SD+G+YTC V N G +Y +D+ V +P+ + +
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSPHRPILQAGLP 125
Query: 137 AAEEET----VTFECKASGLPEPEIHWV-HNGKPISQAPPN--PRRKV----GPNR---- 181
A V F CK +P I W+ H K S+ P+ P KV G N
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE 185
Query: 182 -ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ + N+ ++D G Y C +N +G + ++ VL
Sbjct: 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 24/193 (12%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 95
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 96 ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 153
Query: 345 RGSEPIDFESEPRFV------------QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
+ E + P + SN L + +E D+G+Y C+ +
Sbjct: 154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 213
Query: 393 QATLTVQVPLEAP 405
A LTV +AP
Sbjct: 214 SAWLTVLPKQQAP 226
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 145/364 (39%), Gaps = 63/364 (17%)
Query: 66 IW--SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
+W + +P++P ++S GN ++L + +V +D SY CE N V +S S+ L+VL
Sbjct: 143 LWWVNNQSLPVSPRLQLSNGN--RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Query: 124 AAPYF-TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
P T+ P + E + C A+ P + W NG + +
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGT----------FQQSTQEL 250
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-------DGKT 235
I N+ +++G+Y C A NS + + + +A E PK T D
Sbjct: 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA----EPPKPFITSNNSNPVEDEDA 306
Query: 236 VVLTCRVFGAPKPEVN------WIHNQKELTGGRYTIL-ETGDLKITDVAFADSGEYTCF 288
V LTC +PE+ W++NQ R + + L + V D G Y C
Sbjct: 307 VALTC------EPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG 360
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYEV-------EAGQSATFRCNAVSDPSLKLSI 341
+N+L + ++ P+D + G + + C+A S+P + S
Sbjct: 361 IQNELSVDHSDPVI-----LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYS- 414
Query: 342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
WL ID +Q + L ++ +E +SG YTC+A T+ V
Sbjct: 415 -WL-----IDGN-----IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463
Query: 402 LEAP 405
E P
Sbjct: 464 AELP 467
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 133/328 (40%), Gaps = 39/328 (11%)
Query: 66 IW--SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
+W + +P++P R+ N ++L + V +D G Y C + N + S + L+VL
Sbjct: 321 LWWVNNQSLPVSP--RLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVL 378
Query: 124 AAPYF-TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
P T+ P + ++ C A+ P + W+ +G I Q +
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN-IQQ---------HTQEL 428
Query: 183 TIENLRKSDTGNYGCNATNSL-GYVYKDV-YVNVLAHAPEITEAPKDEYTVDGK-TVVLT 239
I N+ + ++G Y C A NS G+ V + V A P+ + + + V+ K V T
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT 488
Query: 240 CRVFGAPKPEVNWIHNQKELTGGRYTILETGD--LKITDVAFADSGEYTCFARNKLGTAQ 297
C + W++ Q R L G+ L + +V D+ Y C +N + +A
Sbjct: 489 CEPEAQNTTYLWWVNGQSLPVSPRLQ-LSNGNRTLTLFNVTRNDARAYVCGIQNSV-SAN 546
Query: 298 GSGSLTVK----EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
S +T+ T I P D +G + C++ S+PS + S W P
Sbjct: 547 RSDPVTLDVLYGPDTPIIS-PPDSSYLSGANLNLSCHSASNPSPQYS--WRINGIP---- 599
Query: 354 SEPRFVQSNDYSLTVTKSSELDSGQYTC 381
Q + L + K + ++G Y C
Sbjct: 600 ------QQHTQVLFIAKITPNNNGTYAC 621
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 66 IWSKDG--VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
+W +G +P++P ++S GN ++L + +V +D +Y C + N V +S + L VL
Sbjct: 499 LWWVNGQSLPVSPRLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Query: 124 AAPYF-TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
P + P + + C ++ P P+ W NG P K+ PN
Sbjct: 557 YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPN-- 614
Query: 183 TIENLRKSDTGNYGCNATN 201
+ G Y C +N
Sbjct: 615 --------NNGTYACFVSN 625
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 40/260 (15%)
Query: 168 QAPPNP----RRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYVN--------V 214
QA P P R + PN + I+N+ ++DTG Y +V K VN V
Sbjct: 54 QATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTL-------HVIKSDLVNEEATGQFRV 106
Query: 215 LAHAPEITEAPKDEYTVDGK-TVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-- 271
P+ + + + V+ K V TC + W++NQ R L G+
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQ-LSNGNRT 165
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH---THITDQPEDYEVEAGQSATFR 328
L + +V D+ Y C +N + +A+ S S+ + T P + +G++
Sbjct: 166 LTLFNVTRNDTASYKCETQNPV-SARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS 224
Query: 329 CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD 388
C+A S+P + S W F QS L + + +SG YTC+A
Sbjct: 225 CHAASNPPAQYS--WFVNGT---------FQQSTQ-ELFIPNITVNNSGSYTCQAHNSDT 272
Query: 389 FIEAQATLTVQVPLEAPSNF 408
+ T+ V E P F
Sbjct: 273 GLNRTTVTTITVYAEPPKPF 292
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI 90
+ P ++ L + L C P PQ W +G+P + + L
Sbjct: 557 YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIP---------QQHTQVLF 607
Query: 91 IKHVEFSDQGSYTCEVSN 108
I + ++ G+Y C VSN
Sbjct: 608 IAKITPNNNGTYACFVSN 625
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR---KVGPNR 181
+P P + + E T CK G PEP I W +G+P+S R K G
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 182 I--TIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
T++ ++ D G Y C A N +G V + + + + PKD G+T +L
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 239 TCR-VFGAPKPEVNWIHNQKEL---------TGGRYTILETGDLKITDVAFADSGEYTCF 288
C G P+P + WI + L R I++ G+L I++V D G Y C
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 289 ARNKLGTAQGS 299
A+N +GT + S
Sbjct: 189 AQNLVGTRESS 199
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS---QGNYGKSLIIKHVEF---S 97
V +N+ L C G P P W KDG P++ +++ S Q G + ++
Sbjct: 20 VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 98 DQGSYTCEVSNGVGEAKSY--SIDLSVLAAPYFTVEPEFINAAEEETVTFECK-ASGLPE 154
D G Y C N VG+A S S+ ++VL F VEP+ A+ ET EC G+PE
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDD-FRVEPKDTRVAKGETALLECGPPKGIPE 138
Query: 155 PEIHWVHNGKPI------SQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204
P + W+ +G P+ S + R V + I N+ D GNY C A N +G
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 59 GTPLPQTIWSKDGVPINPSDRISQGNY-------GKSLIIKHVEFSDQGSYTCEVSNGVG 111
G P P IW KDGVP++ +S G G +L+I +VE D+G+Y C N VG
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 112 EAKSYSIDLSV 122
+S L V
Sbjct: 195 TRESSYAKLIV 205
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR---KVGPNR 181
+P P + + E T CK G PEP I W +G+P+S R K G
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 182 I--TIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
T++ ++ D G Y C A N +G V + + + + PKD G+T +L
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 239 TCR-VFGAPKPEVNWIHNQKEL---------TGGRYTILETGDLKITDVAFADSGEYTCF 288
C G P+P + WI + L R I++ G+L I++V D G Y C
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 289 ARNKLGTAQGS 299
A+N +GT + S
Sbjct: 189 AQNLVGTRESS 199
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS---QGNYGKSLIIKHVEF---S 97
V +N+ L C G P P W KDG P++ +++ S Q G + ++
Sbjct: 20 VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 98 DQGSYTCEVSNGVGEAKSY--SIDLSVLAAPYFTVEPEFINAAEEETVTFECK-ASGLPE 154
D G Y C N VG+A S S+ ++VL F VEP+ A+ ET EC G+PE
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDD-FRVEPKDTRVAKGETALLECGPPKGIPE 138
Query: 155 PEIHWVHNGKPI------SQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204
P + W+ +G P+ S + R V + I N+ D GNY C A N +G
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 87/206 (42%), Gaps = 27/206 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEA-PKDEYTVDGK 234
+ +E++ SD GNY C N G + +++V+ H P + P + TV G
Sbjct: 75 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 134
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGD--------LKITDVA 278
V C+V+ +P + WI E G +Y +L+ L + +V
Sbjct: 135 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
AD+GEY C N +G A S LTV
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTV 219
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V+ C GG P+P W K+G RI N SLI++ V SD+G+YTC V
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 108 NGVGEAK-SYSIDLSVLAAPYFTVE---PEFINAAEEETVTFECKASGLPEPEIHWV-HN 162
N G +Y +D+ + ++ P + V F CK +P I W+ H
Sbjct: 97 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 156
Query: 163 GKPISQAPPN--PRRKV----GPNRITIE-----NLRKSDTGNYGCNATNSLGYVYKDVY 211
K S+ P+ P KV G N E N+ ++D G Y C +N +G + +
Sbjct: 157 EKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAW 216
Query: 212 VNVL 215
+ VL
Sbjct: 217 LTVL 220
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 24/193 (12%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 95
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 96 ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA--QPHIQWI 153
Query: 345 RGSEPIDFESEPRFV------------QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
+ E + P + SN L + +E D+G+Y C+ +
Sbjct: 154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 213
Query: 393 QATLTVQVPLEAP 405
A LTV +AP
Sbjct: 214 SAWLTVLPKQQAP 226
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 42/235 (17%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
APY+T ++ + + TV F C A+G P P I W+ NG+ ++G
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG-----EHRIGG 64
Query: 180 NR-------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDE 228
+ + +E++ SD GNY C N G + + ++VL +P I +A P ++
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 124
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR--------YTILETG---------D 271
V G V C+V+ +P + W+ E+ G + T+L++
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWL-KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSAT 326
L++ +V+ D GEY C A N +G A+ + L+V H E+ VEA ++ +
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSV----HGPRAAEEELVEADEAGS 234
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 81/205 (39%), Gaps = 46/205 (22%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK---SLIIKHVEFSDQGSYTCEVS 107
V C G P P W K+G RI SL+++ V SD+G+YTC V
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE 92
Query: 108 NGVGEAK-SYSIDLSVLAAPYFTV----EPEFINAAEEETVTFECKASGLPEPEIHWVH- 161
N G + +Y++D+ + +P+ + P A V F CK +P I W+
Sbjct: 93 NKFGSIRQTYTLDV-LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKH 151
Query: 162 ---NGKPISQAPPNPRRKVGPN--------------------RITIENLRKSDTGNYGCN 198
NG KVGP+ R+ + N+ + D G Y C
Sbjct: 152 VEVNGS-----------KVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCR 200
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITE 223
ATN +G K +++V H P E
Sbjct: 201 ATNFIGVAEKAFWLSV--HGPRAAE 223
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 74/193 (38%), Gaps = 25/193 (12%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P ++W+ N +E GG + L + V +D G YTC
Sbjct: 32 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 91
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
NK G+ + + +L V E H I P + G F C SD + I WL
Sbjct: 92 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA--QPHIQWL 149
Query: 345 RGSEPIDFESEP----------RFVQSN---DYSLTVTKSSELDSGQYTCRAQTELDFIE 391
+ E + P ++ + D L + SE D G+Y CRA + E
Sbjct: 150 KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209
Query: 392 AQATLTVQVPLEA 404
L+V P A
Sbjct: 210 KAFWLSVHGPRAA 222
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 87/206 (42%), Gaps = 27/206 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T E TV F C A G P P W+ NGK Q KV
Sbjct: 14 APYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQ 73
Query: 181 RITI--ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
++ E++ SD GNY C N G + +++V+ +P I +A P + TV G
Sbjct: 74 HWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 133
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGD--------LKITDVA 278
V C+V+ +P + WI E G +Y +L+ L + +V
Sbjct: 134 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 192
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
AD+GEY C N +G A S LTV
Sbjct: 193 EADAGEYICKVSNYIGQANQSAWLTV 218
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V+ C GG P P W K+G RI N SLI + V SD+G+YTC V
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 95
Query: 108 NGVGEAK-SYSIDLSVLAAPYFTV----EPEFINAAEEETVTFECKASGLPEPEIHWV-H 161
N G +Y +D+ V +P+ + P + V F CK +P I W+ H
Sbjct: 96 NEYGSINHTYHLDV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 154
Query: 162 NGKPISQAPPN--PRRKV----GPNRITIE-----NLRKSDTGNYGCNATNSLGYVYKDV 210
K S+ P+ P KV G N E N+ ++D G Y C +N +G +
Sbjct: 155 VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSA 214
Query: 211 YVNVL 215
++ VL
Sbjct: 215 WLTVL 219
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 69/193 (35%), Gaps = 24/193 (12%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P W+ N KE GG + L V +D G YTC
Sbjct: 35 TVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVV 94
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
N+ G+ + L V E H I P + G F C SD + I W+
Sbjct: 95 ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 152
Query: 345 RGSEPIDFESEPRFV------------QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
+ E + P + SN L + +E D+G+Y C+ +
Sbjct: 153 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 212
Query: 393 QATLTVQVPLEAP 405
A LTV +AP
Sbjct: 213 SAWLTVLPKQQAP 225
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPN 180
AP FT + + E T TFE SG P PE+ W +G+ IS + P ++ G
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS-TLPGVQISFSDGRA 63
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVL 238
++TI + K+++G Y ATN G + V A P + + G V L
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 239 TCRVFGAPKPEVNWIHNQKELTGG-RYTILETGDLKITDVAFA---DSGEYTCFARNKLG 294
RV G P P V + + E+ + I + GDL +A A DSG Y+ A N +G
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 295 TAQGSGSLTVKEHTH 309
A + L V+ T
Sbjct: 184 RATSTAELLVQGETR 198
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPIN----PSDRISQGNYGKSLIIKHVEFSDQ 99
V L G P+P+ W +DG I+ P +IS + L I V ++
Sbjct: 16 VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANS 75
Query: 100 GSYTCEVSNGVGEAKSYSIDL--SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
G Y+ + +NG G+A S + L + A P F + + + V + + +G+P P +
Sbjct: 76 GRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVV 135
Query: 158 HWVHNGKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGCNATNSLG 204
+ +G I + + G + I D+G Y NATNS+G
Sbjct: 136 KFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG----GRYTILETGDL 272
AP T+ + ++G T + G P PEV+W + + ++ G G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 273 KIT--DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HITDQPEDYEVEAGQSATF 327
K+T V A+SG Y+ A N G A + L VK T + + + V G
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 328 --RCNAVSDPSLKLSIVWLRGSE---PIDFESEPRFVQSND-YSLTVTKSSELDSGQYTC 381
R + P +K + G+E +DF+ Q D YSL + ++ DSG Y+
Sbjct: 124 QVRVTGIPTPVVKF---YRDGAEIQSSLDFQ----ISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 382 RAQTELDFIEAQATLTVQ 399
A + + A L VQ
Sbjct: 177 NATNSVGRATSTAELLVQ 194
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 37 YVTRKKEVALRN-KKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKH 93
+V R + + +R +V L G P P + +DG I S +ISQ SL+I
Sbjct: 106 FVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAE 165
Query: 94 VEFSDQGSYTCEVSNGVGEAKS 115
D G+Y+ +N VG A S
Sbjct: 166 AYPEDSGTYSVNATNSVGRATS 187
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 11/191 (5%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPN 180
AP FT + + E T TFE SG P PE+ W +G+ IS + P ++ G
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS-TLPGVQISFSDGRA 63
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVL 238
++TI + K+++G Y ATN G + V A P + + G V L
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 239 TCRVFGAPKPEVNWIHNQKELTGG-RYTILETGDLKITDVAFA---DSGEYTCFARNKLG 294
RV G P P V + + E+ + I + GDL +A A DSG Y+ A N +G
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 295 TAQGSGSLTVK 305
A + L V+
Sbjct: 184 RATSTAELLVQ 194
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPIN----PSDRISQGNYGKSLIIKHVEFSDQ 99
V L G P+P+ W +DG I+ P +IS + L I V ++
Sbjct: 16 VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANS 75
Query: 100 GSYTCEVSNGVGEAKSYSIDL--SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
G Y+ + +NG G+A S + L + A P F + + + V + + +G+P P +
Sbjct: 76 GRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVV 135
Query: 158 HWVHNGKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGCNATNSLG 204
+ +G I + + G + I D+G Y NATNS+G
Sbjct: 136 KFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG----GRYTILETGDL 272
AP T+ + ++G T + G P PEV+W + + ++ G G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 273 KIT--DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HITDQPEDYEVEAGQSATF 327
K+T V A+SG Y+ A N G A + L VK T + + + V G
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 328 --RCNAVSDPSLKLSIVWLRGSE---PIDFESEPRFVQSND-YSLTVTKSSELDSGQYTC 381
R + P +K + G+E +DF+ Q D YSL + ++ DSG Y+
Sbjct: 124 QVRVTGIPTPVVKF---YRDGAEIQSSLDFQ----ISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 382 RAQTELDFIEAQATLTVQ 399
A + + A L VQ
Sbjct: 177 NATNSVGRATSTAELLVQ 194
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 37 YVTRKKEVALRN-KKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKH 93
+V R + + +R +V L G P P + +DG I S +ISQ SL+I
Sbjct: 106 FVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAE 165
Query: 94 VEFSDQGSYTCEVSNGVGEAKS 115
D G+Y+ +N VG A S
Sbjct: 166 AYPEDSGTYSVNATNSVGRATS 187
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 126/320 (39%), Gaps = 49/320 (15%)
Query: 125 APYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
P F EP +F N+ E ECKASG P PEI W+ + P R+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAE---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 181 RITIENLRKSDTGN------YGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
++ R D Y C A N G + +DV+V + +EA +EY + G
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEA-DNEYVIRG 118
Query: 234 KTVVLTCRVFGAPKPEV-----------NWIHNQKELTGGRYTILETGDLKITDVAFADS 282
+VV+ C + V N+ N T G+Y +L +G+L I +V D
Sbjct: 119 NSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDG 178
Query: 283 -GEYTCFARNKLG----TAQGSGSLTVKE-------HTHITDQPEDYEVEAGQSATFRCN 330
Y C +++L + G L + E + D+ + +VE S + C
Sbjct: 179 YKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCM 238
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQ 384
A S P+ S W + I+ + + V ND +L + + DSG+Y C
Sbjct: 239 AQSYPT--PSFRWYKF---IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 293
Query: 385 TELDFIEAQATLTVQVPLEA 404
+ + LTV PL A
Sbjct: 294 NSVGGESVETVLTVTAPLSA 313
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 90/218 (41%), Gaps = 22/218 (10%)
Query: 101 SYTCEVSNGV-GEAK-SYSIDLSVLAAPYFTVEP--------EFINAAEEETVTFECKAS 150
SY C + + GE + S + V+ P +V P +FI+ + + C A
Sbjct: 181 SYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQ 240
Query: 151 GLPEPEIHWVH--NGKPISQAPP-NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
P P W G QA N R K + I++ D+G Y C NS+G
Sbjct: 241 SYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 300
Query: 208 KDVYVNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTI 266
+ + V A + P TVD G+ V TC+ G P V+W+ + K + G ++
Sbjct: 301 VETVLTVTAPLSAKIDPPTQ--TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHSESV 357
Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L+I V D G Y CF RN +A+ S L +
Sbjct: 358 -----LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 22/157 (14%)
Query: 53 LFCIFGGTPLPQTIW--------SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
L C+ P P W K V +N DR+ Q +LIIK D G Y C
Sbjct: 235 LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLN--DRVKQ--VSGTLIIKDAVVEDSGKYLC 290
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
V+N VG +S L+V A ++P F C+ +G P + W+ +GK
Sbjct: 291 VVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK 349
Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
I + R IE+++K D G Y C N
Sbjct: 350 AIGHSESVLR---------IESVKKEDKGMYQCFVRN 377
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 17/167 (10%)
Query: 238 LTCRVFGAPKPEVNWIHNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARN 291
L C P P W + T + +L +G L I D DSG+Y C N
Sbjct: 235 LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 294
Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
+G LTV P V+ G+ A F C +P +S W++ + I
Sbjct: 295 SVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIG 352
Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
++ L + + D G Y C + + + EA A L +
Sbjct: 353 H---------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 142/367 (38%), Gaps = 76/367 (20%)
Query: 85 YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV---EPEFINAAEEE 141
+ +L I V SDQG YTC S+G+ K+ S + V P+ + A E
Sbjct: 288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGSGMESLVEATVGE 346
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
V K G P PEI W NG P+ N K G + +TI + + DTGNY TN
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNGIPLES---NHTIKAG-HVLTIMEVSERDTGNYTVILTN 402
Query: 202 SLGYVYKDVYVNVLAHA-PEITE----APKDEYTVDGKTVVLTCRVFGAPKP-EVNWI-- 253
+ + V+++ + P+I E +P D Y G T LTC V+ P P ++W
Sbjct: 403 PISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQY-GTTQTLTCTVYAIPPPHHIHWYWQ 461
Query: 254 --------------------------------HNQKELTGGRYTILETGDLKITDVAFAD 281
N+ E+ ++ ++E + ++ +
Sbjct: 462 LEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQA 521
Query: 282 ---SGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLK 338
S Y C A NK+G + S V IT QP D + +S + C A D S
Sbjct: 522 ANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQP-DMQPTEQESVSLWCTA--DRSTF 578
Query: 339 LSIVWLR-GSEPIDFE------------------SEPRFVQS-NDYSLTVTKSSEL-DSG 377
++ W + G +P+ + F S ND + K++ L D G
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638
Query: 378 QYTCRAQ 384
Y C AQ
Sbjct: 639 DYVCLAQ 645
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 164/419 (39%), Gaps = 77/419 (18%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
++V + + G P P+ W K+G+P+ + I G+ L I V D G+YT ++N
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV---LTIMEVSERDTGNYTVILTN 402
Query: 109 GVG-EAKSYSIDLSVLAAPYFTVEPEFINAAEE----ETVTFECKASGLPEP-EIHWVHN 162
+ E +S+ + L V P E I+ + T T C +P P IHW
Sbjct: 403 PISKEKQSHVVSLVVYVPPQIG-EKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQ 461
Query: 163 ---------GKPISQAPPNPR---RKV----GPNRI--------TIENLRKS-------- 190
+ +S P P R V G N+I IE K+
Sbjct: 462 LEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQA 521
Query: 191 --DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP 248
+ Y C A N +G + + +V PEIT P D + ++V L C +
Sbjct: 522 ANVSALYKCEAVNKVGRGERVISFHV-TRGPEITLQP-DMQPTEQESVSLWCTADRSTFE 579
Query: 249 EVNW---------IH----------NQKELTGGRYTIL--ETGDLKITDV---AFADSGE 284
+ W IH N L T+ T D+ I ++ + D G+
Sbjct: 580 NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGD 639
Query: 285 YTCFARNKLGTAQGS--GSLTVKEHTH--ITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
Y C A+++ + LTV E IT E+ G+S C A +P +
Sbjct: 640 YVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ-- 697
Query: 341 IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
I+W + +E + E ++ + +LT+ + + D G YTC+A + L + +A ++
Sbjct: 698 IMWFKDNETL-VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS----LIIKHVEF 96
K ++ + C G P P+ W+K G +N S R + +S L I+ +
Sbjct: 14 KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRT 72
Query: 97 -SDQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECK 148
D+ Y C N VGE ++ L+VL P + P+ T T C
Sbjct: 73 PRDENVYECVAQNSVGEITVHA-KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA 131
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
ASG P+PEI W + P+ + N R +++ + IE+ ++D G Y C ATNS G Y
Sbjct: 132 ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY 191
Query: 208 K---DVYVNV 214
++YV V
Sbjct: 192 SSPANLYVRV 201
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 73/179 (40%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P + PKD+ V G C+ G PKP V W K++ R+ +E + L+
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 274 ITDVAF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQSA 325
I + D Y C A+N +G LTV I P+ VE ++A
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
T C A +P + I W + P+D S R Q +L + S E D G+Y C A
Sbjct: 127 TMLCAASGNPDPE--ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 23/187 (12%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-------KVG 178
P F EP+ +F C+A+G P+P + W GK + N +R +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-----NSQRFETIEFDESA 61
Query: 179 PNRITIENLRK-SDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTV 231
+ I+ LR D Y C A NS+G + + VL P I P+ +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+T + C G P PE+ W + + GR L +G L+I D G+Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 288 FARNKLG 294
A N G
Sbjct: 182 VATNSAG 188
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF--VQ 360
T +E +P+D +G A+F C A DP K + W + + ++ + RF ++
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDP--KPRVTWNKKGKKVNSQ---RFETIE 56
Query: 361 SNDYSLTVTKSSEL----DSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV 413
++ + V + L D Y C AQ + I A LTV + PS F I +
Sbjct: 57 FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF 96
K ++ + C G P P+ W+K G +N S R + G L I+ +
Sbjct: 14 KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRT 72
Query: 97 -SDQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECK 148
D+ Y C N VGE ++ L+VL P + P+ T T C
Sbjct: 73 PRDENVYECVAQNSVGEITVHA-KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA 131
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
ASG P+PEI W + P+ + N R +++ + IE+ ++D G Y C ATNS G Y
Sbjct: 132 ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY 191
Query: 208 K---DVYVNV 214
++YV V
Sbjct: 192 SSPANLYVRV 201
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 73/179 (40%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P + PKD+ V G C+ G PKP V W K++ R+ +E + L+
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 274 ITDVAF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQSA 325
I + D Y C A+N +G LTV I P+ VE ++A
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
T C A +P + I W + P+D S R Q +L + S E D G+Y C A
Sbjct: 127 TMLCAASGNPDPE--ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 23/187 (12%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-------KVG 178
P F EP+ +F C+A+G P+P + W GK + N +R +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-----NSQRFETIEFDESA 61
Query: 179 PNRITIENLRK-SDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTV 231
+ I+ LR D Y C A NS+G + + VL P I P+ +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+T + C G P PE+ W + + GR L +G L+I D G+Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 288 FARNKLG 294
A N G
Sbjct: 182 VATNSAG 188
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF--VQ 360
T +E +P+D +G A+F C A DP K + W + + ++ + RF ++
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDP--KPRVTWNKKGKKVNSQ---RFETIE 56
Query: 361 SNDYSLTVTKSSEL----DSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV 413
++ + V + L D Y C AQ + I A LTV + PS F I +
Sbjct: 57 FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 21/270 (7%)
Query: 53 LFCIFGGTPLPQTI--WSKDGVPINPSD-RIS---QGNYGKSLIIKHVEFSDQGSYTCEV 106
C G + I +S +G ++P+ RIS + +L I + D G Y C V
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKP 165
+ G ++++ + F P E E C S LP P I W H G+
Sbjct: 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRD 140
Query: 166 ISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNA-TNSLGYV-YKDVYVNVLAHAPEITE 223
+ + N + I ++K+D G Y C + G + +KD + V+ + P +
Sbjct: 141 VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD--IQVIVNVPPTVQ 198
Query: 224 APKDEYTVD---GKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDLKI 274
A + G++V L C G P+P ++W I N++E ++ +L I
Sbjct: 199 ARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTI 258
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+V D EY C A NK G S L V
Sbjct: 259 RNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 53 LFCIFGGTPLPQTIWSKDG--VPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
+ C + P IW G V + R + NY L I+ ++ +D+G+Y CE
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---LQIRGIKKTDEGTYRCEGRI 176
Query: 109 -GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE--ETVTFECKASGLPEPEIHWVHNGKP 165
GE I + V P +NA ++VT C A G PEP + W +G+P
Sbjct: 177 LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEP 236
Query: 166 ISQAPPNPRRKV---GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
I + + + + +TI N+ K+D Y C A N G +++ V A
Sbjct: 237 IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 19/181 (10%)
Query: 233 GKTVVLTCRVFG-APKPEVNWIH-NQKELTGGRYTIL------ETGDLKITDVAFADSGE 284
G++ C+V G A +++W N ++L+ + I ++ L I + D+G
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 76
Query: 285 YTCFARNKLGTAQGSGSLTVK--EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
Y C + GT Q ++ VK + + P E + G+ A C+ VS SL +I+
Sbjct: 77 YKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS--SLPPTII 133
Query: 343 WLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCR----AQTELDFIEAQATLT 397
W + + + RF V SN+Y L + + D G Y C A+ E++F + Q +
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Query: 398 V 398
V
Sbjct: 193 V 193
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 136/359 (37%), Gaps = 34/359 (9%)
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNW---------IHNQKELTGGRYTILETGD--LKI 274
K+E T + V L C G P PE+ W K L G + G L I
Sbjct: 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
DV +DSG Y C A +++G Q S L ++ Y G C+ S+
Sbjct: 68 KDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSN 127
Query: 335 PSLKLSIVWLRGSEPIDFESEPR---FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
P SI W R + ++ + L + +S+ D G+Y C A +
Sbjct: 128 PP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF 185
Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEG 450
+ L + +P +I+ + A VS+N P S G Y+V K+
Sbjct: 186 QEYILALADVPSSPYGVKIIE-LSQTTAKVSFN--KPDSHGGVPIHHYQVDV---KEVAS 239
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSL 510
I +++ + G T ++ P + RV A NG G S+I F T + S+
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSI 299
Query: 511 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQS-----------VKGTKVGPLLERLPY 558
P +F L K + ++ Y +KY+S V+G K +LE L +
Sbjct: 300 HGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQW 358
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 14/194 (7%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINPSD-----RIS-QGNYGKS- 88
+ K E N +V L C G P+P+ W + DG D RI +G +G S
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
L IK V+ SD G Y CE ++ +G S+ L + AP F + E + C
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR---ITIENLRKSDTGNYGCNATNSLGY 205
P IHW + + + R + I +D G Y C ATN +G
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Query: 206 VYKDVYVNVLAHAP 219
+++ Y+ LA P
Sbjct: 184 RFQE-YILALADVP 196
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 131 EPEFINAAEEET-----VTFECKASGLPEPEIHWVH--NGKPISQAPPNPRRKV------ 177
+P I E T VT C A G P PEI W +G ++ + ++
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
G + + I++++ SD+G Y C A + +G K +Y+++ +AP+ Y+ +G +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-EYAPKFISNQTIYYSWEGNPIN 119
Query: 238 LTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD------LKITDVAFADSGEYTCFARN 291
++C V P ++W ++ L T L+T L+I + D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 292 KLGT 295
+GT
Sbjct: 180 HIGT 183
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 79/389 (20%), Positives = 153/389 (39%), Gaps = 44/389 (11%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV--------Q 360
HI + E GQ T C+A +P + I W R + F + + Q
Sbjct: 3 HIIQLKNETTYENGQ-VTLVCDAEGEPIPE--ITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 361 SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAV 420
SL + DSG+Y C A + + + L ++ + SN T+ +
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 421 VSWNPVSPQSLRGHFRGYKV----QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKN 476
+S + S H+R K+ + T + R++I+ ++ + ++ + N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 477 F--ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV- 533
R + A PS +P GV + I L + + + KP+ GV
Sbjct: 180 HIGTRFQEYILALADVPS------SPYGV-------KIIELSQTTAKVSFNKPDSHGGVP 226
Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
+ Y++ + V +++ ++ S T L LEP+T Y I +A G G
Sbjct: 227 IHHYQVDVKEV-ASEIWKIVR-----SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY 280
Query: 594 SKYLFY--VPFKNPD--NVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEA 649
SK + +P + P ++ G+ S+ + +S T + + AP +Y + +R + +
Sbjct: 281 SKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITK--QDDGGAPILEYIVKYRSKDKEDQ 338
Query: 650 WNQDDVLDWRQSELVLANQPTFQPYEIKV 678
W + V + ++L + YE+++
Sbjct: 339 WLEKKV-QGNKDHIILEHLQWTMGYEVQI 366
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPI-NPSDRISQGNYGKSLIIKHVEFS---DQGSYTCEVSN 108
C G P P+ +W+K G + N + + + G +++ D+ Y C SN
Sbjct: 26 FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85
Query: 109 GVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH 161
VGE S S L+VL P + P+ T T C ASG P+PEI W
Sbjct: 86 NVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144
Query: 162 NGKPISQAPPNPR----RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
+ P+ + N R R + IE +SD G Y C ATNS G Y
Sbjct: 145 DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY 194
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------GP 179
P FT P +F C+A+G P P+I W GK +S N R +V
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS----NQRFEVIEFDDGSG 62
Query: 180 NRITIENLRK-SDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTVD 232
+ + I+ LR D Y C A+N++G + + VL P I P+ +
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 233 GKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILET---GDLKITDVAFADSGEY 285
+T + C G P PE+ W + GR L + G L+I +D G+Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 286 TCFARNKLGT 295
C A N GT
Sbjct: 183 ECVATNSAGT 192
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 19/182 (10%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P T P D+ V G C+ G P+P++ W K+++ R+ ++E D L+
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 274 ITDVAF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD-------QPEDYEVEAGQSA 325
I + D Y C A N +G S LTV I P+ VE ++A
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPRFVQSNDYS---LTVTKSSELDSGQYTC 381
T C A +P + I W + P+D + R Q S L + +S E D G+Y C
Sbjct: 127 TMLCAASGNPDPE--ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 382 RA 383
A
Sbjct: 185 VA 186
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQ--GNYGKSLIIKHVEFS 97
+V R + + C G P P+ W KD +P++ S+ RI Q +L I+ E S
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSV 122
DQG Y C +N G S +L V
Sbjct: 178 DQGKYECVATNSAGTRYSAPANLYV 202
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 14/194 (7%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINPSD-----RIS-QGNYGKS- 88
+ K E N +V L C G P+P+ W + DG D RI +G +G S
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
L IK V+ SD G Y CE ++ +G S+ L + AP F + E + C
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL---RKSDTGNYGCNATNSLGY 205
P IHW + + + R I + +D G Y C ATN +G
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Query: 206 VYKDVYVNVLAHAP 219
+++ Y+ LA P
Sbjct: 184 RFQE-YILALADVP 196
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 131 EPEFINAAEEET-----VTFECKASGLPEPEIHWVH--NGKPISQAPPNPRRKV------ 177
+P I E T VT C A G P PEI W +G ++ + ++
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
G + + I++++ SD+G Y C A + +G K +Y+++ +AP+ Y+ +G +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-EYAPKFISNQTIYYSWEGNPIN 119
Query: 238 LTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD------LKITDVAFADSGEYTCFARN 291
++C V P ++W ++ L T L+T L+I + D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 292 KLGT 295
+GT
Sbjct: 180 HIGT 183
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 110/289 (38%), Gaps = 23/289 (7%)
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNW---------IHNQKELTGGRYTILETGD--LKI 274
K+E T + V L C G P PE+ W K L G + G L I
Sbjct: 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
DV +DSG Y C A +++G Q S L ++ Y G C+ S+
Sbjct: 68 KDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSN 127
Query: 335 PSLKLSIVWLRGSEPIDFESEPR---FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
P SI W R + ++ + L + +S+ D G+Y C A +
Sbjct: 128 PP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF 185
Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEG 450
+ L + +P +I+ + A VS+N P S G Y+V K+
Sbjct: 186 QEYILALADVPSSPYGVKIIE-LSQTTAKVSFN--KPDSHGGVPIHHYQVDV---KEVAS 239
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
I +++ + G T ++ P + RV A NG G S+I F T
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 114/302 (37%), Gaps = 37/302 (12%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV--------Q 360
HI + E GQ T C+A +P + I W R + F + + Q
Sbjct: 3 HIIQLKNETTYENGQ-VTLVCDAEGEPIPE--ITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 361 SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAV 420
SL + DSG+Y C A + + + L ++ + SN T+ +
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 421 VSWNPVSPQSLRGHFRGYKV----QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKN 476
+S + S H+R K+ + T + R++I+ ++ + ++ + N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 477 F--ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV- 533
R + A PS +P GV + I L + + + KP+ GV
Sbjct: 180 HIGTRFQEYILALADVPS------SPYGV-------KIIELSQTTAKVSFNKPDSHGGVP 226
Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
+ Y++ + V +++ ++ S T L LEP+T Y I +A G G
Sbjct: 227 IHHYQVDVKEV-ASEIWKIVR-----SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY 280
Query: 594 SK 595
SK
Sbjct: 281 SK 282
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 12/193 (6%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR--RKVGPN--- 180
P P + ++ E T CKA G P P I W G+ + +PR R + P+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 181 ---RITIENLRKSDTGNYGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
RI + D G Y C A N LG V D + V + + P D G+
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 237 VLTCR-VFGAPKPEVNWIHNQKELTGGRYTI-LETGDLKITDVAFADSGEYTCFARNKLG 294
V+ C+ G P+P ++W + L I + G L IT +D+G+Y C N +G
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189
Query: 295 TAQGS-GSLTVKE 306
+ LTV E
Sbjct: 190 ERESEVAELTVLE 202
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 20/202 (9%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDL 272
P I E P D G+ L C+ G P P + W + K+ +L +G L
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 273 KITDVAFA-----DSGEYTCFARNKLGTA-QGSGSLTVK-EHTHITDQPEDYEVEAGQSA 325
+ D G Y C ARN LG A SL V P D V G+ A
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
C + +I W + P+D + E ++ +T T+ S D+G+Y C
Sbjct: 130 VMECQPPRG-HPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKS--DAGKYVCVGTN 186
Query: 386 ELDFIEAQ-ATLTVQVPLEAPS 406
+ E++ A LTV LE PS
Sbjct: 187 MVGERESEVAELTV---LERPS 205
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 73/183 (39%), Gaps = 13/183 (7%)
Query: 53 LFCIFGGTPLPQTIWSKDG--VPINPSDRISQGNYGKS-----LIIKHVEFS--DQGSYT 103
L C G P P W K G V + D S S L I H S D+G Y
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88
Query: 104 CEVSNGVGEAKSYSIDLSV-LAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVH 161
C N +GEA S+ L V + F P + A E EC+ G PEP I W
Sbjct: 89 CVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK 148
Query: 162 NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
+G P+ + R + ++ I RKSD G Y C TN +G +V + P
Sbjct: 149 DGSPLDDK--DERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206
Query: 222 TEA 224
+A
Sbjct: 207 VKA 209
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV---EPEFINAAEEETVT 144
+L I V SDQG YTC S+G+ K+ S + V P+ + A E V
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGSGMESLVEATVGERVR 219
Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204
K G P PEI W NG P+ N K G + +TI + + DTGNY TN +
Sbjct: 220 IPAKYLGYPPPEIKWYKNGIPLES---NHTIKAG-HVLTIMEVSERDTGNYTVILTNPIS 275
Query: 205 YVYKDVYVNVLAHA-PEITE----APKDEYTVDGKTVVLTCRVFGAPKP-EVNW 252
+ V+++ + P+I E +P D Y G T LTC V+ P P ++W
Sbjct: 276 KEKQSHVVSLVVYVPPQIGEKSLISPVDSYQY-GTTQTLTCTVYAIPPPHHIHW 328
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
A ++V + + G P P+ W K+G+P+ + I G+ L I V D G+YT
Sbjct: 212 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV---LTIMEVSERDTGNYTV 268
Query: 105 EVSNGVG-EAKSYSIDLSVLAAPYFTVEPEFINAAEE----ETVTFECKASGLPEP-EIH 158
++N + E +S+ + L V P E I+ + T T C +P P IH
Sbjct: 269 ILTNPISKEKQSHVVSLVVYVPPQIG-EKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 327
Query: 159 W 159
W
Sbjct: 328 W 328
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI---TDQPEDYEVEAGQSATFR 328
L I V +D G YTC A + L T + S + V E + + E G+
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 221
Query: 329 CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
+ P ++ W + P+ E + LT+ + SE D+G YT
Sbjct: 222 AKYLGYPPPEIK--WYKNGIPL----ESNHTIKAGHVLTIMEVSERDTGNYT 267
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 97 SDQGSYTCEVS-NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE--ETVTFECKASGLP 153
SD+G Y CE GE I + V P ++ + NA E E +TF C+ASG P
Sbjct: 67 SDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP 126
Query: 154 EPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212
EP I W NGK I + + G N +T+ N+ SD G Y C ATN G K ++
Sbjct: 127 EPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 213 NVLAH 217
V
Sbjct: 185 QVFVQ 189
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDT 192
EF + E V C+ S P P + W+++ + ++ N + N + I N+ KSD
Sbjct: 13 EFKQGEDAEVV---CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69
Query: 193 GNYGCNA-TNSLGYV-YKDVYVNVLAHAPEITEAPKDEYTVD---GKTVVLTCRVFGAPK 247
G Y C + G + ++D+ V + + P P+ + G+ + +CR G+P+
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIV--IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 248 PEVNWIHNQKELTGGRYTILE--TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
P ++W N K + IL+ +L + ++ +D G Y C A NK G + L V
Sbjct: 128 PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKITDVAFADSGEYTCFA 289
G+ + CRV +P P V+W+++ +E+T R+ +L +L+I ++ +D G Y C
Sbjct: 17 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-- 74
Query: 290 RNKLGTAQGSGSLTVKEHTHITDQPE---------DYEVEAGQSATFRCNAVSDPSLKLS 340
G + G + ++ I + P + E G+ TF C A P +S
Sbjct: 75 ---EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 131
Query: 341 IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
W R + I+ E+E ++ ++ LTV D G Y CRA + E QA L V V
Sbjct: 132 --WFRNGKLIE-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
A R +++ C G+P P W ++G I +++ L ++++ SD G Y C
Sbjct: 110 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 169
Query: 105 EVSNGVGE 112
+N GE
Sbjct: 170 RATNKAGE 177
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF-SDQGSYTCEVS 107
C G P P+ W+K G +N S R + G L I+ + D+ Y C
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQ 84
Query: 108 NGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
N GE ++ L+VL P + P+ T T C ASG P+PEI W
Sbjct: 85 NPHGEVTVHA-KLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143
Query: 161 HNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK---DVYVNV 214
+ P+ + N R +++ + IE+ ++D G Y C A+NS G Y ++YV V
Sbjct: 144 KDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGVRYSSPANLYVRV 201
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 71/179 (39%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P + P D+ V G C+ G PKP V W K++ R+ +E + L+
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 274 ITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHT-------HITDQPEDYEVEAGQSA 325
I + D Y C A+N G LTV +I P+ VE ++A
Sbjct: 67 IQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
T C A +P + I W + P+D S R Q L + S E D G+Y C A
Sbjct: 127 TMLCAASGNPDPE--ITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVA 183
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 23/169 (13%)
Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRR-------KVGPNRITIENLRK-SDTGNY 195
+F C+A+G P+P + W GK + N +R + + I+ LR D Y
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKV-----NSQRFETIEFDESAGAVLRIQPLRTPRDENIY 79
Query: 196 GCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE 249
C A N G V + VL P I P+ + +T + C G P PE
Sbjct: 80 ECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPE 139
Query: 250 VNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
+ W + + GR L +G L+I D G+Y C A N G
Sbjct: 140 ITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAG 188
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS---DRISQGNYGKSLIIKHVEFSDQ 99
+V R + + C G P P+ W KD +P++PS RI Q G L I+ E +DQ
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSG-GLQIESSEETDQ 176
Query: 100 GSYTCEVSNGVGEAKSYSIDLSV 122
G Y C SN G S +L V
Sbjct: 177 GKYECVASNSAGVRYSSPANLYV 199
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 47 RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFSDQGSY 102
+ + V+L C G P W KDG + D+ +S+ ++ L +K VE SD G Y
Sbjct: 16 QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVH 161
C+V +G S + L+V P+FTVEP+ + C+A G PEP I W
Sbjct: 76 WCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR 135
Query: 162 NGKPISQAPPNP 173
I P+P
Sbjct: 136 GTTKIGGPAPSP 147
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQA-----PPNPRRKVGPNRITIEN 186
P + ++ + V C G EP+I WV +G + P + + +G +++++
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG--FLSLKS 66
Query: 187 LRKSDTGNYGCNATN-SLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
+ +SD G Y C + + + V++ V P T PKD L+C G
Sbjct: 67 VERSDAGRYWCQVEDGGETEISQPVWLTV-EGVPFFTVEPKDLAVPPNAPFQLSCEAVGP 125
Query: 246 PKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA 296
P+P + W ++ G + L +T V S ++C A N G A
Sbjct: 126 PEPVTIVWWRGTTKIGGPAPS---PSVLNVTGV--TQSTXFSCEAHNLKGLA 172
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDLK 273
++ AP G+ V L C V G +P++ W + N +L G L
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGS--LTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
+ V +D+G Y C + G + S LTV+ T +P+D V C A
Sbjct: 64 LKSVERSDAGRYWCQVEDG-GETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 332 VSDPSLKLSIVWLRGSEPI 350
V P ++IVW RG+ I
Sbjct: 123 VGPPE-PVTIVWWRGTTKI 140
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 142 TVTFECKASGLPEPEIHWVH--NGKPISQAPP-NPRRKVGPNRITIENLRKSDTGNYGCN 198
T++ C A G P P W G QA N R K + I++ D+G Y C
Sbjct: 235 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 294
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQK 257
NS+G + + V A + P TVD G+ V TC+ G P V+W+ + K
Sbjct: 295 VNNSVGGESVETVLTVTAPLSAKIDPPTQ--TVDFGRPAVFTCQYTGNPIKTVSWMKDGK 352
Query: 258 ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+ G ++ L+I V D G Y CF RN +A+ S L +
Sbjct: 353 AI-GHSESV-----LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 32/213 (15%)
Query: 3 WQSRSEYKIGNRILLN------VIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCI 56
+Q R+++++ L+ VI IS+S AP+ + +K + + L C
Sbjct: 186 YQCRTKHRLTGETRLSATKGRLVITEPISSS----APRTPALVQKPLELMVAHTISLLCP 241
Query: 57 FGGTPLPQTIW--------SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
G P P W K V +N DR+ Q +LIIK D G Y C V+N
Sbjct: 242 AQGFPAPSFRWYKFIEGTTRKQAVVLN--DRVKQ--VSGTLIIKDAVVEDSGKYLCVVNN 297
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ 168
VG +S L+V A ++P F C+ +G P + W+ +GK I
Sbjct: 298 SVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH 356
Query: 169 APPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
+ R IE+++K D G Y C N
Sbjct: 357 SESVLR---------IESVKKEDKGMYQCFVRN 380
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 122/320 (38%), Gaps = 52/320 (16%)
Query: 125 APYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
P F EP +F N+ E ECKASG P PEI W+ + P R+
Sbjct: 9 GPVFLKEPTNRIDFSNSTGAE---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 65
Query: 181 RITIENLRKSDTGN------YGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
++ R D Y C A N G + +DV+V + + K E+ + G
Sbjct: 66 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRG 124
Query: 234 KTVVLTCRV--FGAPKPEVNWIHNQKELT-------GGRYTILETGDLKITDVAFADS-G 283
+ V+ C + F A EV H +E G+Y +L +G+L I +V D
Sbjct: 125 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 184
Query: 284 EYTCFARNKLGTAQGSGSLTVKEHTHITDQP-------------EDYEVEAGQSATFRCN 330
Y C +++L G L+ + + +P + E+ + + C
Sbjct: 185 SYQCRTKHRL---TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 241
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQ 384
A P+ S W + I+ + + V ND +L + + DSG+Y C
Sbjct: 242 AQGFPA--PSFRWYKF---IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 296
Query: 385 TELDFIEAQATLTVQVPLEA 404
+ + LTV PL A
Sbjct: 297 NSVGGESVETVLTVTAPLSA 316
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/391 (20%), Positives = 130/391 (33%), Gaps = 70/391 (17%)
Query: 52 ELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGS------YTC 104
E+ C G P+P+ IW + DG + + Q + L+ D Y C
Sbjct: 29 EIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 88
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVE------------------PEFI---------NA 137
N G S + + + A Y+ + P F+ +
Sbjct: 89 LARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT 148
Query: 138 AEEET----VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTG 193
EEE ++ K LP E+H G R K +R+T E + G
Sbjct: 149 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTK---HRLTGETRLSATKG 205
Query: 194 NYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI 253
V + + P + + P + + T+ L C G P P W
Sbjct: 206 RL----------VITEPISSSAPRTPALVQKPLE--LMVAHTISLLCPAQGFPAPSFRWY 253
Query: 254 HNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
+ T + +L +G L I D DSG+Y C N +G LTV
Sbjct: 254 KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 313
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
P V+ G+ A F C +P +S W++ + I ++ L
Sbjct: 314 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIG---------HSESVLR 362
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
+ + D G Y C + + + EA A L +
Sbjct: 363 IESVKKEDKGMYQCFVRNDRESAEASAELKL 393
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 142 TVTFECKASGLPEPEIHWVH--NGKPISQAPP-NPRRKVGPNRITIENLRKSDTGNYGCN 198
T++ C A G P P W G QA N R K + I++ D+G Y C
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 288
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQK 257
NS+G + + V A + P TVD G+ V TC+ G P V+W+ + K
Sbjct: 289 VNNSVGGESVETVLTVTAPLSAKIDPPTQ--TVDFGRPAVFTCQYTGNPIKTVSWMKDGK 346
Query: 258 ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+ G ++ L+I V D G Y CF RN +A+ S L +
Sbjct: 347 AI-GHSESV-----LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 32/213 (15%)
Query: 3 WQSRSEYKIGNRILLN------VIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCI 56
+Q R+++++ L+ VI IS+S AP+ + +K + + L C
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSS----APRTPALVQKPLELMVAHTISLLCP 235
Query: 57 FGGTPLPQTIW--------SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
G P P W K V +N DR+ Q +LIIK D G Y C V+N
Sbjct: 236 AQGFPAPSFRWYKFIEGTTRKQAVVLN--DRVKQ--VSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ 168
VG +S L+V A ++P F C+ +G P + W+ +GK I
Sbjct: 292 SVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH 350
Query: 169 APPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
+ + + IE+++K D G Y C N
Sbjct: 351 S---------ESVLRIESVKKEDKGMYQCFVRN 374
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 122/320 (38%), Gaps = 52/320 (16%)
Query: 125 APYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
P F EP +F N+ E ECKASG P PEI W+ + P R+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAE---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 181 RITIENLRKSDTGN------YGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
++ R D Y C A N G + +DV+V + + K E+ + G
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRG 118
Query: 234 KTVVLTCRV--FGAPKPEVNWIHNQKELT-------GGRYTILETGDLKITDVAFADS-G 283
+ V+ C + F A EV H +E G+Y +L +G+L I +V D
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 178
Query: 284 EYTCFARNKLGTAQGSGSLTVKEHTHITDQP-------------EDYEVEAGQSATFRCN 330
Y C +++L G L+ + + +P + E+ + + C
Sbjct: 179 SYQCRTKHRL---TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 235
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQ 384
A P+ S W + I+ + + V ND +L + + DSG+Y C
Sbjct: 236 AQGFPA--PSFRWYKF---IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 290
Query: 385 TELDFIEAQATLTVQVPLEA 404
+ + LTV PL A
Sbjct: 291 NSVGGESVETVLTVTAPLSA 310
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/391 (20%), Positives = 130/391 (33%), Gaps = 70/391 (17%)
Query: 52 ELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGS------YTC 104
E+ C G P+P+ IW + DG + + Q + L+ D Y C
Sbjct: 23 EIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 82
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVE------------------PEFI---------NA 137
N G S + + + A Y+ + P F+ +
Sbjct: 83 LARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT 142
Query: 138 AEEET----VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTG 193
EEE ++ K LP E+H G R K +R+T E + G
Sbjct: 143 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTK---HRLTGETRLSATKG 199
Query: 194 NYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI 253
V + + P + + P + + T+ L C G P P W
Sbjct: 200 RL----------VITEPISSSAPRTPALVQKPLE--LMVAHTISLLCPAQGFPAPSFRWY 247
Query: 254 HNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
+ T + +L +G L I D DSG+Y C N +G LTV
Sbjct: 248 KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 307
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
P V+ G+ A F C +P +S W++ + I ++ L
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIGH---------SESVLR 356
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
+ + D G Y C + + + EA A L +
Sbjct: 357 IESVKKEDKGMYQCFVRNDRESAEASAELKL 387
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPNR 181
AP+F E +N + T CK +G P+P + W GK I R K G ++
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
+ I ++ D Y ATN G V +V V H P+ E + + G+ V
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 238 LTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAF------ADSGEYTCFAR 290
+ G P P + W Q + G Y ++ T T + F D+G Y A+
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF--TSLVFPNGVERKDAGFYVVCAK 179
Query: 291 NKLGTAQGSGSLTVKE 306
N+ G Q + L V +
Sbjct: 180 NRFGIDQKTVELDVAD 195
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPNR 181
AP+F E +N + T CK +G P+P + W GK I R K G ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
+ I ++ D Y ATN G V +V V H P+ E + + G+ V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 238 LTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAF------ADSGEYTCFAR 290
+ G P P + W Q + G Y ++ T T + F D+G Y A+
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF--TSLVFPNGVERKDAGFYVVCAK 181
Query: 291 NKLGTAQGSGSLTVKE 306
N+ G Q + L V +
Sbjct: 182 NRFGIDQKTVELDVAD 197
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 74/200 (37%), Gaps = 23/200 (11%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----T 269
A AP E ++ L C+V G PKP V W KE+ G +Y I E
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
L I V D+ Y A N+ G+ G+ SL V+ I P+ E G R
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLE-GMGAVHALRG 119
Query: 330 NAVS---------DPSLKLSIVWLRGSEPIDFESEPRFVQSNDY-SLTVTKSSEL-DSGQ 378
VS DP I W +G + ID + + + + SL E D+G
Sbjct: 120 EVVSIKIPFSGKPDP----VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 379 YTCRAQTELDFIEAQATLTV 398
Y A+ + L V
Sbjct: 176 YVVCAKNRFGIDQKTVELDV 195
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPNR 181
AP+F E +N + T CK +G P+P + W GK I R K G ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
+ I ++ D Y ATN G V +V V H P+ E + + G+ V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 238 LTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAF------ADSGEYTCFAR 290
+ G P P + W Q + G Y ++ T T + F D+G Y A+
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF--TSLVFPNGVERKDAGFYVVCAK 181
Query: 291 NKLGTAQGSGSLTVKE 306
N+ G Q + L V +
Sbjct: 182 NRFGIDQKTVELDVAD 197
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 112/297 (37%), Gaps = 33/297 (11%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----T 269
A AP E ++ L C+V G PKP V W KE+ G +Y I E
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
L I V D+ Y A N+ G+ G+ SL V+ I P+ E G R
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLE-GMGAVHALRG 119
Query: 330 NAVS---------DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS--ELDSGQ 378
VS DP I W +G + ID + + + ++ V + D+G
Sbjct: 120 EVVSIKIPFSGKPDP----VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 379 YTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGY 438
Y A+ + L V + P ++V D + V+ P S G
Sbjct: 176 YVVCAKNRFGIDQKTVELDVADVPDPPRG---VKVSDVSRDSVNLTWTEPASDGGS---- 228
Query: 439 KVQTW-TEKDGEGSIRELIVNKG-ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493
K+ + EK + R L V + E+ T ++ F S F RV+A N PSE
Sbjct: 229 KITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQF-RVIAENKFGLSKPSE 284
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG--DLKIT 275
AP + KD ++G+ VL C V G P P + W+ N + + R T E G +L I
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-EAGVAELHIQ 69
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTV 304
D D G YTC A N LG S +TV
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
AP F+ + E + +C G P P I W+ NG+PI A + G + I
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA--RSTCEAGVAELHI 68
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
++ D G Y C A N+LG V +V V
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
L C GTP+P+ W +G PI + + + L I+ D G+YTC N +G+
Sbjct: 31 LQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE-LHIQDALPEDHGTYTCLAENALGQ 89
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF 358
SGS ++ + +D V GQ +C+ P + I WL +PI +
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPR--ITWLLNGQPIQYARST-- 58
Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
++ L + + D G YTC A+ L + A +TV
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRY----TILETG 270
+AP I E P D +G L CR G VNW+ N +T G Y ++L G
Sbjct: 310 CYAPVIVEPPTDLNVTEGMAAELKCRT-GTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG 368
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L T+V D+G+YTC N G S +L V
Sbjct: 369 TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL--RGSEPIDFESEPRFVQSNDYSLT 367
I + P D V G +A +C + + S+ WL G+ R +D +L
Sbjct: 315 IVEPPTDLNVTEGMAAELKCRTGTSMT---SVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
T + D+GQYTC A ATL V
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 23/150 (15%)
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
W K+ VP N + ++ + L +++ DQ +TC AP
Sbjct: 274 WLKETVPSNTTC-CARCHAPAGLKGRYIGELDQSHFTC-------------------YAP 313
Query: 127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPN-RITI 184
P +N E +C+ +G ++W+ NG ++ R V + +
Sbjct: 314 VIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNF 372
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
N+ DTG Y C TNS G +NV
Sbjct: 373 TNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 135 INAAEEETVTFECKASGLPEPEIHW-----------VHNGKPISQAPPNPRRKVGPNRIT 183
+ E E++ C SG P + W +N + AP R + IT
Sbjct: 11 VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQIT--APYADRVTFSSSGIT 68
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP--EITEAPKDEYTVDGKTVVLTCR 241
++ + D G Y C + G Y +V +++ P + T + T+ G VLTC
Sbjct: 69 FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI-GNRAVLTCS 127
Query: 242 VF-GAPKPEVNWIHN-----------QKELTGGRYTIL-ETGDLKITDVAFADSGEYTCF 288
G+P E +W + + +TI ++GDL V DSGEY C
Sbjct: 128 EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQ 187
Query: 289 ARNKLGTAQGS 299
A+N GTA S
Sbjct: 188 AQNGYGTAMRS 198
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 33/184 (17%)
Query: 48 NKKVELFCIFGGTPLPQTIW--------------SKDGVPINPSDRISQGNYGKSLIIKH 93
N+ ++L C + G P+ W S+ P +DR++ + G +
Sbjct: 16 NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY--ADRVTFSSSG--ITFSS 71
Query: 94 VEFSDQGSYTCEVSNGVGEA-KSYSIDLSVL---AAPYFTVEPEFINAAEEETVTFECKA 149
V D G YTC VS G+ SI L+VL + P +V P + +T +
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTCS-EH 129
Query: 150 SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI---------ENLRKSDTGNYGCNAT 200
G P E W +G + A R + TI + + D+G Y C A
Sbjct: 130 DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Query: 201 NSLG 204
N G
Sbjct: 190 NGYG 193
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS---- 88
P + ++ V + N+ V G+P + W KDG+ + +D + S
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 164
Query: 89 ------LIIKHVEFSDQGSYTCEVSNGVGEA 113
LI V D G Y C+ NG G A
Sbjct: 165 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 68/191 (35%), Gaps = 38/191 (19%)
Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-------------GGRYTILETG 270
A D + +++ LTC G P V W Q T R T +G
Sbjct: 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
+ + V D+GEYTC + G G S+ H + P + S T
Sbjct: 67 -ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI----HLTVLVPPSKPTISVPSSVTIGNR 121
Query: 331 AV-----SDPSLKLSIVWLRGSEPI---DFESEPRFVQSNDYSLTVT-KSSEL------- 374
AV D S W + + D + F+ S S T+ KS +L
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS---SFTIDPKSGDLIFDPVTA 178
Query: 375 -DSGQYTCRAQ 384
DSG+Y C+AQ
Sbjct: 179 FDSGEYYCQAQ 189
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 29/200 (14%)
Query: 131 EPEFINAAEEETVTFECKASGLPEPEIHW-----------VHNGKPISQAPPNPRRKVGP 179
EPE + E V C SG P + W +N K A R P
Sbjct: 11 EPE-VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNK--ITASYEDRVTFLP 67
Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP--EITEAPKDEYTVDGKTVV 237
IT +++ + DTG Y C + G Y +V V ++ P + T T+ G V
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI-GNRAV 126
Query: 238 LTC-RVFGAPKPEVNWIHN----------QKELTGGRYTI-LETGDLKITDVAFADSGEY 285
LTC G+P E W + + + Y + TG+L ++ +D+GEY
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 186
Query: 286 TCFARNKLGTAQGSGSLTVK 305
+C ARN GT S ++ ++
Sbjct: 187 SCEARNGYGTPMTSNAVRME 206
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 68/186 (36%), Gaps = 38/186 (20%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKD------------GVPINPSDRISQGNYGKSLIIKHVE 95
N V+L C + G P+ W D + + DR++ G + K V
Sbjct: 19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG--ITFKSVT 76
Query: 96 FSDQGSYTCEVS----NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETV----TFEC 147
D G+YTC VS N GE K + L VL P +N T+ C
Sbjct: 77 REDTGTYTCMVSEEGGNSYGEVK---VKLIVLVPP----SKPTVNIPSSATIGNRAVLTC 129
Query: 148 -KASGLPEPEIHWVHNGKPISQAPPNPRR------KVGPN--RITIENLRKSDTGNYGCN 198
+ G P E W +G + P + R + P + + L SDTG Y C
Sbjct: 130 SEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189
Query: 199 ATNSLG 204
A N G
Sbjct: 190 ARNGYG 195
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV--PINP--SDRISQGNY--- 85
P + V + N+ V G+P + W KDG+ P NP + S +Y
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 167
Query: 86 --GKSLIIKHVEFSDQGSYTCEVSNGVG 111
L+ + SD G Y+CE NG G
Sbjct: 168 PTTGELVFDPLSASDTGEYSCEARNGYG 195
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 116/283 (40%), Gaps = 41/283 (14%)
Query: 60 TPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116
TP + WSKD V S R+ S+GN K + K + D G Y+C+V++ G A SY
Sbjct: 29 TPKSEFSWSKDYVSTEDSPRLEVESKGNKTK-MTFKDLGMDDLGIYSCDVTDTDGIASSY 87
Query: 117 SID---LSVLAA-------PYFTVEPEF-INAAEEETVTFECKASGLP-EPEIHWVHNGK 164
ID L L A P V+ E + E+ V F +A L +++++ N K
Sbjct: 88 LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK 147
Query: 165 PISQAPP---NPRRKVGPNRITIENLRKSDTGNY-----GCNATNS-----LGYVYKDVY 211
I + P + R G + +E L+ D G Y ATN +G V+K +
Sbjct: 148 EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
Query: 212 VN--------VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGG 262
+ P E E T + V+L C+V K + W +++E++
Sbjct: 208 KEAEFQRQEWIRKQGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDEREISVD 266
Query: 263 RYTILETG--DLKITDVAFADSGEYTCFARNKLGTAQGSGSLT 303
+ G L IT+ + D+G Y ++ G + L
Sbjct: 267 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 141 ETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVG-PNRITIENLRKSDTGNYGCN 198
E+ F C A G PE I W + G+ I +K G +R+TI N D G Y C
Sbjct: 18 ESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 76
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
AT++ G + V + E + G+ + CRV +P P V+W+++ +E
Sbjct: 77 ATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEE 136
Query: 259 LT---GGRYTILETGDLKITDVAFADSGEYTCFAR 290
+T R+ +L +L+I ++ +D G Y C R
Sbjct: 137 VTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR 171
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 8/166 (4%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGE 112
C G P ++ G I + R+ G L I + D G Y C+ ++ G+
Sbjct: 24 CTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 83
Query: 113 AKSYSIDLSVLAAPYF--TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP 170
+ ++ L + F V P+ E+ V C+ S P P + W+++ + ++
Sbjct: 84 TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV--CRVSSSPAPAVSWLYHNEEVTTIS 141
Query: 171 PNPRRKVGPNRITIENLRKSDTGNYGCNA-TNSLGYV-YKDVYVNV 214
N + N + I N+ KSD G Y C + G + ++D+ V V
Sbjct: 142 DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKE--LTGGRYTILETG---DLKITDVAFADSGEYTC 287
G++ TC G P+ ++W + Q E ++ R + + G L I + D+G Y C
Sbjct: 17 GESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 75
Query: 288 FARNKLG-TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRG 346
A + G T + + L + + + E + G+ A C S P+ +S WL
Sbjct: 76 QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS--WLYH 133
Query: 347 SEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC----RAQTELDF 389
+E + S+ RF + +L + ++ D G Y C A+ E+DF
Sbjct: 134 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDF 180
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
+P+ AP N + V+++ A V W+PV +S+RGH +GY++ W + R I K
Sbjct: 13 LPMVAPGNVR-VNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71
Query: 460 -----GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 502
G T + P S V NG GP S F TPEG
Sbjct: 72 ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 13/199 (6%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
L AP N + ++K +W P S G GY+V+ W + D E L +
Sbjct: 2 LGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL---DSK 52
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
+ E+ P +V A+ GP S ++S T + VP L + S+
Sbjct: 53 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 112
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
L W +P + NG + Y++ Y V +GP+ + L + +P + L S YR
Sbjct: 113 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENLRESQPYR 170
Query: 580 IHLAGYTKAGDGAESKYLF 598
+ AG G E + +
Sbjct: 171 YTVKARNGAGWGPEREAII 189
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 13/199 (6%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
L AP N + ++K +W P S G GY+V+ W + D E L +
Sbjct: 6 LGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL---DSK 56
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
+ E+ P +V A+ GP S ++S T + VP L + S+
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
L W +P + NG + Y++ Y V +GP+ + L + +P + L S YR
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENLRESQPYR 174
Query: 580 IHLAGYTKAGDGAESKYLF 598
+ AG G E + +
Sbjct: 175 YTVKARNGAGWGPEREAII 193
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 13/199 (6%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
L AP N + ++K +W P S G GY+V+ W + D E L +
Sbjct: 5 LGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL---DSK 55
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
+ E+ P +V A+ GP S ++S T + VP L + S+
Sbjct: 56 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 115
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
L W +P + NG + Y++ Y V +GP+ + L + +P + L S YR
Sbjct: 116 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENLRESQPYR 173
Query: 580 IHLAGYTKAGDGAESKYLF 598
+ AG G E + +
Sbjct: 174 YTVKARNGAGWGPEREAII 192
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 13/199 (6%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
L AP N + ++K +W P S G GY+V+ W + D E L +
Sbjct: 6 LGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL---DSK 56
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
+ E+ P +V A+ GP S ++S T + VP L + S+
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
L W +P + NG + Y++ Y V +GP+ + L + +P + L S YR
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENLRESQPYR 174
Query: 580 IHLAGYTKAGDGAESKYLF 598
+ AG G E + +
Sbjct: 175 YTVKARNGAGWGPEREAII 193
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 63 PQTIWSKDGVPINPSDRI-SQGNYGKS----------LIIKHVEFSDQGSYTCEVSNGVG 111
P+ W +DG + +D +Q G+ L I ++ SD G Y C V G
Sbjct: 33 PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Query: 112 EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAP 170
S + + PYF EPE A C+A G PEP ++ W+ + P++ AP
Sbjct: 93 TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
Query: 171 PNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLG 204
+ GP R + + L K T ++ C A N+ G
Sbjct: 153 GH-----GPQRSLHVPGLNK--TSSFSCEAHNAKG 180
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 128 FTVEPEFINAAEEETVTFECK--ASGLPEPEIHWVHNGKPI-------SQAPPNPRRK-- 176
F P I A T T C+ G P PE+HW+ +G+ + +Q P +
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 177 -VGPNRITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGK 234
+ +++ I +L+ SDTG Y C +V + YV L P E P+D
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVG-LEGLPYFLEEPEDRTVAANT 122
Query: 235 TVVLTCRVFGAPKP-EVNWIHN 255
L+C+ G P+P ++ W+ +
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQD 144
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 20/135 (14%)
Query: 233 GKTVVLTCR--VFGAPKPEVNWIHNQK--ELTGGRYTILETGD-----------LKITDV 277
G T L C+ V G P PEV+W+ + + EL T + G+ L+IT +
Sbjct: 17 GLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL 75
Query: 278 AFADSGEYTC--FARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
+D+G+Y C F ++ +Q G + ++ + ++PED V A C A P
Sbjct: 76 QLSDTGQYQCLVFLGHQTFVSQ-PGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP 134
Query: 336 SLKLSIVWLRGSEPI 350
+ ++WL+ + P+
Sbjct: 135 E-PVDLLWLQDAVPL 148
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
+EP++IN +E++VT C+ + PE + I W HNG I + P+ R K N
Sbjct: 9 LEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
D+G Y C + + V++ VL+ + + P E+ +G+T+VL C + P
Sbjct: 62 ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIVLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V + N K R + I + SG+Y C
Sbjct: 115 LVKVTFFQNGKSKKFSR----SDPNFSIPQANHSHSGDYHC 151
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 66/173 (38%), Gaps = 27/173 (15%)
Query: 235 TVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
+V LTCR +P+ + + W HN G T DSGEYTC
Sbjct: 21 SVTLTCRGTHSPESDSIQWFHN------GNLIPTHTQPSYRFKANNNDSGEYTC------ 68
Query: 294 GTAQGSGS----LTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP 349
T Q S S LTV + P E + G++ RC++ D L + G
Sbjct: 69 QTGQTSLSDPVHLTVLSEWLVLQTPH-LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSK 127
Query: 350 IDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTVQVP 401
S+P F ++ +++ SG Y C ++ T+TVQ P
Sbjct: 128 KFSRSDPNF--------SIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP 172
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRY----TILETG 270
+AP I E P D +G L CR V+WI N +T G Y +L G
Sbjct: 339 CYAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L T+V D+G YTC N +G S +L V
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL--RGSEPIDFESEPRFVQSNDYSLT 367
I + P D V G +A +C A + + S+ W+ G+ + R +D +L
Sbjct: 344 IVEPPADLNVTEGMAAELKCRASTSLT---SVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
T + D+G YTC + A ATL V
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 23/150 (15%)
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
W KD P N + ++ N +L +++ DQ +TC AP
Sbjct: 303 WIKDMAPSNTAC-CARCNTPPNLKGRYIGELDQNYFTC-------------------YAP 342
Query: 127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPN-RITI 184
P +N E +C+AS + W+ NG ++ R V + +
Sbjct: 343 VIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNF 401
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
N+ DTG Y C +NS+G +NV
Sbjct: 402 TNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE-----TGDLKITDVAFADSGEYT 286
+GK + LTC V+G P PEV+W+ N+K L + L+ T I V+ ADSG+Y
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 287 CFARNKLGTAQGSGSLTV 304
+NK G+ +++V
Sbjct: 296 LVVKNKYGSETSDFTVSV 313
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFS--DQGSYTCEVSNG-VGEAKSYSIDLSVL 123
WS +G I SDR+ G G+ + ++ E + D+G Y E+ +G G K+ +DLS
Sbjct: 142 WSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT--VDLSGQ 199
Query: 124 AAPYFTVE---------------------PEFINAAEEETVTFECKASGLPEPEIHWVHN 162
A E P+ + E + + C G P PE+ W+ N
Sbjct: 200 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN 259
Query: 163 GKPI-SQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
K + S N + + G TI + +D+G YG N G D V+V
Sbjct: 260 EKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 143 VTFECKASGLPEPEIH--WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
VT +C + ++ W NG ++ R+ I R D+G Y C
Sbjct: 21 VTLQCNLTSSSHTLMYSYWTKNGVELTAT----RKNASNMEYRINKPRAEDSGEYHC-VY 75
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE-- 258
+ + + + V A AP+IT + E +G+ ++ C+ G P PE W+ +KE
Sbjct: 76 HFVSAPKANATIEVKA-APDITGHKRSENKNEGQDAMMYCKSVGYPHPE--WMWRKKENG 132
Query: 259 ------LTGGR--------YTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+ GR YT L +L+IT+ D GEY C A N +G+A S L V
Sbjct: 133 VFEEISNSSGRFFIINKENYTELNIVNLQITE----DPGEYECNATNSIGSASVSTVLRV 188
Query: 305 K 305
+
Sbjct: 189 R 189
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 16/178 (8%)
Query: 38 VTRKKEVALRNK--KVELFCIFGGTP--LPQTIWSKDGVPINPSDRISQGNYGKSLIIKH 93
+ +EV +R+ V L C + L + W+K+GV + + + + I
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN---MEYRINK 62
Query: 94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP 153
D G Y C V + V K+ + + V AAP T N E + CK+ G P
Sbjct: 63 PRAEDSGEYHC-VYHFVSAPKA-NATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP 120
Query: 154 EPEIHWVHNGKPISQAPPNPR------RKVGPNRITIENLR-KSDTGNYGCNATNSLG 204
PE W + + N K + I NL+ D G Y CNATNS+G
Sbjct: 121 HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 53 LFCIFGGTPLPQTIWSK--DGV---PINPSDR---ISQGNYGKSLIIKHVEFSDQGSYTC 104
++C G P P+ +W K +GV N S R I++ NY + I+ D G Y C
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171
Query: 105 EVSNGVGEA 113
+N +G A
Sbjct: 172 NATNSIGSA 180
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---GKSLIIKHVEFSDQGSYTC 104
++ V L C G P P W+KDG PI D + ++ G LIIK V+ SD+ Y C
Sbjct: 28 SQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYIC 87
Query: 105 EVSNGVGEAKSYSIDLSVLA 124
N GE + +I L V A
Sbjct: 88 IAENKAGE-QDATIHLKVFA 106
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCN 198
++VT C A G PEP + W +G+PI Q + + + I+ + KSD Y C
Sbjct: 29 QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 199 ATNSLGYVYKDVYVNVLA 216
A N G +++ V A
Sbjct: 89 AENKAGEQDATIHLKVFA 106
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 234 KTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETG-DLKITDVAFADSGEYTCF 288
++V L C G P+P + W + ++E +Y+ G +L I V +D EY C
Sbjct: 29 QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 289 ARNKLGTAQGSGSLTV 304
A NK G + L V
Sbjct: 89 AENKAGEQDATIHLKV 104
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV--LAHAPEITEAP---------KDEYT 230
+ I N+ SD GNY C ++ + K V+ L PE T P KD Y
Sbjct: 68 LYIANVEASDKGNYSCFVSSP--SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYA 125
Query: 231 VDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFAR 290
+ G+ V L C G P P++ W + + LKI ++ D G Y C A
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Query: 291 NKLGTAQGSGSLTVK 305
N G + + V+
Sbjct: 186 NIRGKDKHQARIYVQ 200
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 80 ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP------- 132
+SQ N +L I +VE SD+G+Y+C VS+ +S + ++ P T +P
Sbjct: 61 VSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVV 118
Query: 133 EF--INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS 190
+F + A + VT EC A G P P+I W +P+ P + I N++
Sbjct: 119 QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM---PSTAEISTSGAVLKIFNIQLE 175
Query: 191 DTGNYGCNATNSLG 204
D G Y C A N G
Sbjct: 176 DEGIYECEAENIRG 189
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIK 92
P V K AL + V L C G P+P W K P+ + IS G L I
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS--GAVLKIF 170
Query: 93 HVEFSDQGSYTCEVSNGVGEAK 114
+++ D+G Y CE N G+ K
Sbjct: 171 NIQLEDEGIYECEAENIRGKDK 192
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 232 DGKTVVLTCRV-FGAPKP-EVNWIHNQ----KELTGGRYTILETGDLKITDVAFADSGEY 285
+GK +VL C + P W+ N+ + R+ G+L I +V +D G Y
Sbjct: 22 EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNY 81
Query: 286 TCFARN----KLGTAQGSGSLTVKEHT------HITDQPEDYEVEAGQSATFRCNAVSDP 335
+CF + K ++ + + E T I Q +D GQ+ T C A+ +P
Sbjct: 82 SCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP 141
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQAT 395
I W + EP+ +E + ++ L + D G Y C A+ + QA
Sbjct: 142 V--PDIRWRKVLEPMPSTAE---ISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQAR 196
Query: 396 LTVQ 399
+ VQ
Sbjct: 197 IYVQ 200
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE-----TGDLKITDVAFADSGEYT 286
+GK + LTC V+G P PEV+W+ N+K L + L+ T I V+ ADSG+Y
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYG 190
Query: 287 CFARNKLGTAQGSGSLTV 304
+NK G+ +++V
Sbjct: 191 LVVKNKYGSETSDFTVSV 208
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFS--DQGSYTCEVSNG-VGEAKSYSIDLSVL 123
WS +G I SDR+ G G+ + ++ E + D+G Y E+ +G G K+ +DLS
Sbjct: 37 WSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT--VDLSGQ 94
Query: 124 AAPYFTVE---------------------PEFINAAEEETVTFECKASGLPEPEIHWVHN 162
A E P+ + E + + C G P PE+ W+ N
Sbjct: 95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN 154
Query: 163 GKPISQAPP-NPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
K ++Q N + + G TI + +D+G YG N G D V+V
Sbjct: 155 EKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 52 ELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNG 109
+L C G PLP W + G + S + + G++ L + E D+G YTC +N
Sbjct: 26 QLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNE 85
Query: 110 VGEAKSYSIDLSVLAAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
VGE ++ S L + A P F ++ ++ A T+ G P P + W H G+
Sbjct: 86 VGEVETSS-KLLLQATPQFHPGYPLKEKYYGAV-GSTLRLHVMYIGRPVPAMTWFH-GQK 142
Query: 166 ISQAPPNPRRKVGPNRITIENL------------RKSDTGNYGCNATNSLGYV 206
+ Q N ITIEN RK+ G Y +N G V
Sbjct: 143 LLQNSEN---------ITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 5/139 (3%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG-PNRIT 183
AP E + + E C+ G P P+I W GK + Q+ G + +T
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEA-PKDE--YTVDGKTVVLTC 240
+ + D G Y C ATN +G V + +L P+ P E Y G T+ L
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKL-LLQATPQFHPGYPLKEKYYGAVGSTLRLHV 125
Query: 241 RVFGAPKPEVNWIHNQKEL 259
G P P + W H QK L
Sbjct: 126 MYIGRPVPAMTWFHGQKLL 144
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL----ETGDLK 273
AP I + KD T G+ L+C++ G P P++ W KEL R + T L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
+ D G YTC A N++G + S L ++
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 219 PEITEAPKDE-YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG--RYTILETGDLKIT 275
P I + P ++ VDG T +L C+ G P P ++W+ G R TI E G L+I
Sbjct: 9 PIILQGPANQTLAVDG-TALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
++ +D+G YTC A + G S L V E
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG-PNRITI 184
P P A + T +CKA+G P P I W+ G + +PR + + I
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEG--FTFPGRDPRATIQEQGTLQI 66
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+NLR SDTG Y C AT+S G ++V
Sbjct: 67 KNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
L C G PLP W K+G D + +L IK++ SD G+YTC ++ GE
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGE 87
Query: 113 AKSYSIDLSV 122
S+S L V
Sbjct: 88 T-SWSAVLDV 96
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI--SQAPPNPRRKVGPNRIT 183
P+F P + E + +CK SGLP P++ W +GKP+ A R+ G + +
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 184 IENLRKSDTGNYGCNATNSLG 204
IE + D G Y C ATN G
Sbjct: 70 IEPVTSRDAGIYTCIATNRAG 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETG--DLK 273
P +AP D +GK + C+V G P P+++W + K + + + + E G L
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
I V D+G YTC A N+ G S L V
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG 111
C G P P W DG P+ P + + N SLII+ V D G YTC +N G
Sbjct: 31 CKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
Query: 112 EAKSYSIDLSVLA 124
+ S+S++L V A
Sbjct: 91 Q-NSFSLELVVAA 102
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGG----RYTILETGDL 272
AP I +AP+D +G+ L CR P V W+ N L+ R ++L G L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+ V +D+G YTC N G + S L V
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 93 HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL 152
H +G Y EV + +AP+ P +N +E +C+
Sbjct: 330 HAPMHMRGRYLVEVDQASFQC----------SAPFIMDAPRDLNISEGRMAELKCRTP-- 377
Query: 153 PEPEIHWVH-NGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210
P + W+ NG +S A +PR V + ++ SDTG Y C TN G
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASA 437
Query: 211 YVNV 214
Y+NV
Sbjct: 438 YLNV 441
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL--RGSEPIDFESEPRFVQSNDYSLT 367
I D P D + G+ A +C S+K WL G+ PR ND +L
Sbjct: 355 IMDAPRDLNISEGRMAELKCRTPPMSSVK----WLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
+ D+G YTC A A L V
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
+EP +IN +E++VT C+ + PE + I W HNG I + P+ R K N
Sbjct: 6 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 58
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
D+G Y C + + V++ VL+ + + P E+ +G+T++L C + P
Sbjct: 59 ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 111
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V + N K +++ L+ I + SG+Y C
Sbjct: 112 LVKVTFFQNGK---SQKFSRLDP-TFSIPQANHSHSGDYHC 148
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDL 272
P+I P D +GK + + C G P PEV W IH+Q++ GR+ I T DL
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ---GRFHIENTDDL 64
Query: 273 K---ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
I DV D G YT LG GS S TV H
Sbjct: 65 TTLIIMDVQKQDGGLYTL----SLGNEFGSDSATVNIH 98
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFSDQGSYTC 104
K + + C F G P P+ WS G I+ ++ I + +LII V+ D G YT
Sbjct: 23 KVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTL 82
Query: 105 EVSNGVGEAKSYSIDLSV 122
+ N G + S ++++ +
Sbjct: 83 SLGNEFG-SDSATVNIHI 99
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-- 183
P P I+ E + +T C +G P PE+ W G+ I + +T
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 67
Query: 184 -IENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
I +++K D G Y + N G V +++
Sbjct: 68 IIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDL 272
P+I P D +GK + + C G P PEV W IH+Q++ GR+ I T DL
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ---GRFHIENTDDL 62
Query: 273 K---ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
I DV D G YT LG GS S TV H
Sbjct: 63 TTLIIMDVQKQDGGLYTL----SLGNEFGSDSATVNIH 96
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFSDQGSYTC 104
K + + C F G P P+ WS G I+ ++ I + +LII V+ D G YT
Sbjct: 21 KVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTL 80
Query: 105 EVSNGVGEAKSYSIDLSV 122
+ N G + S ++++ +
Sbjct: 81 SLGNEFG-SDSATVNIHI 97
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-- 183
P P I+ E + +T C +G P PE+ W G+ I + +T
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 184 -IENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
I +++K D G Y + N G V +++
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
+EP +IN +E++VT C+ + PE + I W HNG I + P+ R K N
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
D+G Y C + + V++ VL+ + + P E+ +G+T++L C + P
Sbjct: 62 ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V + N K +++ L+ I + SG+Y C
Sbjct: 115 LVKVTFFQNGK---SQKFSRLDP-TFSIPQANHSHSGDYHC 151
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
+EP +IN +E++VT C+ + PE + I W HNG I + P+ R K N
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
D+G Y C + + V++ VL+ + + P E+ +G+T++L C + P
Sbjct: 62 ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V + N K +++ L+ I + SG+Y C
Sbjct: 115 LVKVTFFQNGK---SQKFSRLDP-TFSIPQANHSHSGDYHC 151
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
+EP +IN +E++VT C+ + PE + I W HNG I + P+ R K N
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
D+G Y C + + V++ VL+ + + P E+ +G+T++L C + P
Sbjct: 62 ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V + N K +++ L+ I + SG+Y C
Sbjct: 115 LVKVTFFQNGK---SQKFSRLDP-TFSIPQANHSHSGDYHC 151
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR--RKVGPN 180
+ P F PE ++ E + K SGLP P++ W NG+ + + + G +
Sbjct: 3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ E +R SD G Y C A N G V ++VLA
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETG--DLK 273
P + P++ +G+ + +V G P P+V+W N + + + + E G L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
V +D+G Y C A+N+ G A + L V
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 59 GTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115
G P P W +G + D I SLI + V SD G+Y C N GEA +
Sbjct: 31 GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEA-T 89
Query: 116 YSIDLSVLA 124
+++ L VLA
Sbjct: 90 FTVQLDVLA 98
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP--PNPRRKVGPNRIT 183
PYFT ++ E F+CK G P+PE+ W + P+ ++ + G +T
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 184 IENLRKSDTGNYGCNATNSLG 204
I + D Y C A NSLG
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLG 122
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P T+ D V+G C+V G P PEV W + + R+ ++ + L
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
I++V D +YTC A N LG A + L V+
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPS-----DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
C G P P+ +W KD P+ S D +GN SL I V D YTC+ N
Sbjct: 63 CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC--SLTISEVCGDDDAKYTCKAVNS 120
Query: 110 VGEA 113
+GEA
Sbjct: 121 LGEA 124
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN-----DYSLTVTK 370
D +V G +A F C P + ++W + P+ E R Q + + SLT+++
Sbjct: 50 DMDVVEGSAARFDCKVEGYPDPE--VMWFKDDNPV---KESRHFQIDYDEEGNCSLTISE 104
Query: 371 SSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
D +YTC+A L +AT T ++ +E
Sbjct: 105 VCGDDDAKYTCKAVNSL----GEATCTAELLVE 133
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
+EP +IN +E++VT C+ + PE + I W HNG I + P+ R K N
Sbjct: 12 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 64
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
D+G Y C + + V++ VL + + P E+ +G+T++L C + P
Sbjct: 65 ---DSGEYTCQTGQT--SLSDPVHLTVLFEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 117
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V + N K +++ L+ I + SG+Y C
Sbjct: 118 LVKVTFFQNGK---SQKFSHLDP-TFSIPQANHSHSGDYHC 154
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
+EP +IN +E++VT C+ + PE + I W HNG I + P+ R K N
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
D+G Y C + + V++ VL + + P E+ +G+T++L C + P
Sbjct: 62 ---DSGEYTCQTGQT--SLSDPVHLTVLFEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V + N K +++ L+ I + SG+Y C
Sbjct: 115 LVKVTFFQNGK---SQKFSHLDP-TFSIPQANHSHSGDYHC 151
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG 111
L C+ G+P+P +W KDGV ++ D RI Q G L I++ + D G YTC S G
Sbjct: 28 LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIASTPSG 86
Query: 112 EA 113
EA
Sbjct: 87 EA 88
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGDLKITD 276
P I + P ++ T VL+C G+P P + W + ++ R LE G L+I
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
D+G YTC A G A S + V+E
Sbjct: 69 AKLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 136 NAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-IENLRKSDTGN 194
A + T C A+G P P I W +G +S + R K N + I + DTG
Sbjct: 19 TVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ--DSRIKQLENGVLQIRYAKLGDTGR 76
Query: 195 YGCNATNSLGYVYKDVYVNV 214
Y C A+ G Y+ V
Sbjct: 77 YTCIASTPSGEATWSAYIEV 96
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP--PNPRRKVGPNRIT 183
PYFT + E F+CK G P+PE+ W + P+ ++ + G +T
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 184 IENLRKSDTGNYGCNATNSLG 204
I + D Y C A NSLG
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLG 122
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P T+ D V+G C+V G P PEV W + + R+ ++ + L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
I++V D +YTC A N LG A + L V+
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPS-----DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
C G P P+ +W KD P+ S D +GN SL I V D YTC+ N
Sbjct: 63 CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC--SLTISEVCGDDDAKYTCKAVNS 120
Query: 110 VGEA 113
+GEA
Sbjct: 121 LGEA 124
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN-----DYSLTVTK 370
D EV G +A F C P + ++W + P+ E R Q + + SLT+++
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDPE--VMWFKDDNPV---KESRHFQIDYDEEGNCSLTISE 104
Query: 371 SSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
D +YTC+A L +AT T ++ +E
Sbjct: 105 VCGDDDAKYTCKAVNSL----GEATCTAELLVE 133
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 233 GKTVVLTCRVFG-APKPEVNWIH-NQKELT--GGRYTILETGD----LKITDVAFADSGE 284
G++ C+V G A +++W N ++L+ R +++ D L I + D+G
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 76
Query: 285 YTCFARNKLGTAQGSGSLTVK--EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
Y C + GT Q ++ VK + + P E + G+ A C+ VS SL +I+
Sbjct: 77 YKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS--SLPPTII 133
Query: 343 WLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCR----AQTELDFIEAQATL 396
W + + + RF V SN+Y L + + D G Y C A+ E++F + Q +
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 16/162 (9%)
Query: 141 ETVTFECKASG-LPEPEIHWVH-NGKPISQAPPNPRR------KVGPNRITIENLRKSDT 192
E+ F C+ +G + +I W NG+ +S PN +R + +TI N D
Sbjct: 18 ESKFFLCQVAGDAKDKDISWFSPNGEKLS---PNQQRISVVWNDDDSSTLTIYNANIDDA 74
Query: 193 GNYGCNATNSLGYVYKDVYVNV-LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN 251
G Y C T G + VNV + AP + +G+ V+ C V + P +
Sbjct: 75 GIYKCVVTAEDG-TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII 133
Query: 252 WIHNQKELT---GGRYTILETGDLKITDVAFADSGEYTCFAR 290
W H +++ R+ +L L+I + D G Y C R
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR 175
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 8/152 (5%)
Query: 53 LFCIFGGTPLPQTI--WSKDGVPINPSD-RIS---QGNYGKSLIIKHVEFSDQGSYTCEV 106
C G + I +S +G ++P+ RIS + +L I + D G Y C V
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKP 165
+ G ++++ + F P E E C S LP P I W H G+
Sbjct: 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRD 140
Query: 166 ISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
+ + N + I ++K+D G Y C
Sbjct: 141 VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
P + D+ +G+ V+++ RV G PKP V+W+ N++ + + E + L+
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
I D+G YTC A N+ G Q L V+
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-----KVG 178
A P F V + E + V + G P+P + W+ N +P+ P+ RR + G
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR---PDQRRFAEEAEGG 60
Query: 179 PNRITIENLRKSDTGNYGCNATNSLG 204
R+ I + D G Y C A N G
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYG 86
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT---VTKSS 372
D V GQ +P K + WLR +P+ + RF + + L + +
Sbjct: 14 DQSVREGQDVIMSIRVQGEP--KPVVSWLRNRQPVR-PDQRRFAEEAEGGLCRLRILAAE 70
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQ 399
D+G YTC+A E + +A L V+
Sbjct: 71 RGDAGFYTCKAVNEYGARQCEARLEVR 97
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----T 269
A AP K +G V TCRV G PKP++ W + K+++ YTI T
Sbjct: 5 ATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
L T D G YT A N G +G L V+
Sbjct: 65 CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQ 100
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN---PRRKVGPNR 181
AP+F ++ + E VTF C+ +G P+P+I+W +GK IS + R G
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 182 ITIENLRKSDTGNYGCNATNSLGYV 206
+ D GNY A N G V
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRV 91
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN---DYSLTVTKSSE 373
Y++ G TF C +P K I W + + I +S+ +Q + SL T S+
Sbjct: 17 YKIFEGMPVTFTCRVAGNP--KPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 74
Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQ 399
D G YT A + L VQ
Sbjct: 75 DDDGNYTIMAANPQGRVSCTGRLMVQ 100
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL----TGGRYTILETGDLKITDVAFADSGE 284
+ +G TV CR G P P + W+ +K L + GR T+ G L++ D+G
Sbjct: 396 FVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGT 455
Query: 285 YTCFARNKLGTAQGSGSLTVK 305
Y C A N G L V+
Sbjct: 456 YLCIAANAGGNDSMPAHLHVR 476
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 122 VLAAPYFTVEPEFIN--------AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP 173
VL YFT I E TV F C+A G P P I W+ K + A N
Sbjct: 374 VLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNG 433
Query: 174 RRKVGPN-RITIENLRKSDTGNYGCNATNSLG 204
R V P+ + + + D G Y C A N+ G
Sbjct: 434 RLTVFPDGTLEVRYAQVQDNGTYLCIAANAGG 465
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 508 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT- 564
Q + + +GS+ + WV P + NGV+ Y + Y++V G +R ++ D +
Sbjct: 23 QKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE------DRGRHVVDGISR 76
Query: 565 --TSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY-----VPFKNPDNVE 609
+S L GLE T+YR+ + +T G G ES + VP P VE
Sbjct: 77 EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVE 128
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 516 GSSAFYLKWVKPEQPNGVLMGYKIK-YQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP 574
G ++ L W +PEQPNG+++ Y+IK Y+ K + L+ + TT A ++GL+P
Sbjct: 23 GQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAV-------TTRATVSGLKP 75
Query: 575 STKYRIHLAGYTKAGDGAESKYL 597
T+Y + T AG G S+ +
Sbjct: 76 GTRYVFQVRARTSAGCGRFSQAM 98
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----TGDLKITDVAFADSGEY 285
+G V TCRV G PKP++ W + K+++ YTI T L T D G Y
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81
Query: 286 TCFARNKLGTAQGSGSLTVK 305
T A N G +G L V+
Sbjct: 82 TIMAANPQGRISCTGRLMVQ 101
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN---PRRKVGPN 180
AP+F ++ + E VTF C+ +G P+P+I+W +GK IS + R G
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 181 RITIENLRKSDTGNYGCNATNSLGYV 206
+ D GNY A N G +
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRI 92
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN---DYSLTVTKSSE 373
Y++ G TF C +P K I W + + I +S+ +Q + SL T S+
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPK--IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 75
Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
D G YT A I L VQ PS+
Sbjct: 76 DDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ +E++ SD GNY C N G + +++V+
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V+ C GG P+P W K+G RI N SLI++ V SD+G+YTC V
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 85
Query: 108 NGVGEA-KSYSIDL 120
N G +Y +D+
Sbjct: 86 NEYGSINHTYHLDV 99
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 25 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 84
Query: 290 RNKLGTAQGSGSLTV 304
N+ G+ + L V
Sbjct: 85 ENEYGSINHTYHLDV 99
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF----VQSNDYSLTVTKSS 372
+ V A + FRC A +P + WL+ + +F+ E R V++ +SL +
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMR--WLKNGK--EFKQEHRIGGYKVRNQHWSLIMESVV 73
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTV 398
D G YTC + E I L V
Sbjct: 74 PSDKGNYTCVVENEYGSINHTYHLDV 99
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 565
TV + + + L W +PEQPNG+++ Y+I+Y + + + R T
Sbjct: 10 TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMAR------SQTN 63
Query: 566 SAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY 599
+A++ GL P Y + + T AG G S + +
Sbjct: 64 TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCF 97
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 8 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 67
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ +E++ SD GNY C N G + +++V+
Sbjct: 68 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 104
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V+ C GG P+P W K+G RI N SLI++ V SD+G+YTC V
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 89
Query: 108 NGVGEAK-SYSIDL 120
N G +Y +D+
Sbjct: 90 NEYGSINHTYHLDV 103
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 29 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 88
Query: 290 RNKLGTAQGSGSLTV 304
N+ G+ + L V
Sbjct: 89 ENEYGSINHTYHLDV 103
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF----VQSNDYSLTVTKSS 372
+ V A + FRC A +P + WL+ + +F+ E R V++ +SL +
Sbjct: 22 HAVPAANTVKFRCPAGGNPMPTMR--WLKNGK--EFKQEHRIGGYKVRNQHWSLIMESVV 77
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTV 398
D G YTC + E I L V
Sbjct: 78 PSDKGNYTCVVENEYGSINHTYHLDV 103
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 9 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 68
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ +E++ SD GNY C N G + +++V+
Sbjct: 69 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 105
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V+ C GG P+P W K+G RI N SLI++ V SD+G+YTC V
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 90
Query: 108 NGVGEAK-SYSIDL 120
N G +Y +D+
Sbjct: 91 NEYGSINHTYHLDV 104
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
TV C G P P + W+ N KE GG + L + V +D G YTC
Sbjct: 30 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 89
Query: 290 RNKLGTAQGSGSLTV 304
N+ G+ + L V
Sbjct: 90 ENEYGSINHTYHLDV 104
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF----VQSNDYSLTVTKSS 372
+ V A + FRC A +P + WL+ + +F+ E R V++ +SL +
Sbjct: 23 HAVPAANTVKFRCPAGGNPMPTMR--WLKNGK--EFKQEHRIGGYKVRNQHWSLIMESVV 78
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTV 398
D G YTC + E I L V
Sbjct: 79 PSDKGNYTCVVENEYGSINHTYHLDV 104
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-I 182
A P F V+P E ++ F C+ P + W + + + Q+ +R G + +
Sbjct: 375 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 434
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAP 225
TI ++ D G Y A NS G + V++NV H+ + P
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEP 477
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 205 YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-- 262
Y +D + + P P +G++ CRV + P V W + +EL
Sbjct: 363 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 422
Query: 263 ---RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT 308
RY + G L I V D GEYT A+N GT + L V H+
Sbjct: 423 YMKRYNGNDYG-LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 470
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 23/83 (27%)
Query: 313 QPEDYEVEAGQSATFRCNAVS-----------DPSLKLSIVWLRGSEPIDFESEPRFVQS 361
+P EV GQSA F C ++ D LK S+ +++ R+
Sbjct: 382 KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK-----------RY-NG 429
Query: 362 NDYSLTVTKSSELDSGQYTCRAQ 384
NDY LT+ + D G+YT RA+
Sbjct: 430 NDYGLTINRVKGDDKGEYTVRAK 452
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG--DLKIT 275
AP IT +++ T G+++ ++C G P P++ W + + L +L+ G +L I
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 69
Query: 276 DVAFADSGEYTCFARNKLGTAQ 297
V D G YTC A + LG A+
Sbjct: 70 RVRKEDEGLYTCQACSVLGCAK 91
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
+ +E+ C G P PQ +W KD + I + ++L I+ V D+G YTC+ +
Sbjct: 26 ESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 85
Query: 109 GVGEAK 114
+G AK
Sbjct: 86 VLGCAK 91
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 120 LSVL--AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV 177
L+VL AP T E + E++ C ASG P P+I W + + + + K
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKD 61
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211
G +TI +RK D G Y C A + LG + +
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 95
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 302 LTVKEHTH--ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
LTV E IT E+ G+S C A +P + I+W + +E + E +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ--IMWFKDNETL-VEDSGIVL 59
Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ + +LT+ + + D G YTC+A + L + +A ++
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI-HNQKELTGG----RYTILETG 270
+ P I +AP+D +G+ L CR P V W+ N L+ R ++L G
Sbjct: 5 SSGPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDG 62
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L + V +D+G YTC N G + S L V
Sbjct: 63 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV-HNGKPISQAPPNPRRKV-GPNR 181
+ P+ P +N +E +C+ P + W+ NG +S A +PR V
Sbjct: 6 SGPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 63
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+ ++ SDTG Y C TN G Y+NV
Sbjct: 64 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL--RGSEPIDFESEPRFVQSNDYSLT 367
I D P D + G+ A +C S+K WL G+ PR ND +L
Sbjct: 10 IMDAPRDLNISEGRMAELKCRTPPMSSVK----WLLPNGTVLSHASRHPRISVLNDGTLN 65
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
+ D+G YTC A A L V
Sbjct: 66 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 79 RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
RIS N G +L HV SD G YTC V+N G + + S L+V + P
Sbjct: 55 RISVLNDG-TLNFSHVLLSDTGVYTCMVTNVAGNSNA-SAYLNVSSGP 100
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY----FTVEPE 133
D + QGN SL ++ V +D+GSYTC VS + + S ++ L V AAPY T+EP
Sbjct: 65 DLLVQGN--ASLRLQRVRVTDEGSYTCFVS--IQDFDSAAVSLQV-AAPYSKPSMTLEPN 119
Query: 134 FINAAEEETVTFECKA-SGLPEPEIHW 159
+ VT C + G PE E+ W
Sbjct: 120 -KDLRPGNMVTITCSSYQGYPEAEVFW 145
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 16/154 (10%)
Query: 178 GPNRITIENLRKSDTGNYGCNAT-NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
G + ++ +R +D G+Y C + + V P +T P + G V
Sbjct: 70 GNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLR-PGNMV 128
Query: 237 VLTCRVF-GAPKPEVNWIHNQKELTGGRYTILETGDLK-------ITDVAFADSGEYTCF 288
+TC + G P+ EV W Q G T + + + + V +G Y+C
Sbjct: 129 TITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCL 188
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAG 322
RN + GS+T IT QP + E G
Sbjct: 189 VRNPVLQQDAHGSVT------ITGQPLTFPPETG 216
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 31/266 (11%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
T++P +++ +EETVT C+ LP W NG + P+ R I +
Sbjct: 4 ITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYR---------ITS 54
Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAP 246
+D+G Y C G + + + H + +G+ + L C +
Sbjct: 55 ASVNDSGEYRCQR----GLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAW-KD 109
Query: 247 KPEVNWIHNQKELTGGRYTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
K N ++ + G + +L I + +G Y C K S+TVK
Sbjct: 110 KLVYNVLYYRN---GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Query: 306 EH--THITDQPEDYEVEAGQSATFRCNA---VSDPSLKLSIVWLRGSEPIDFESEPRFVQ 360
E + + + G T C + P L+L + GS+ + +
Sbjct: 167 ELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN-----T 221
Query: 361 SNDYSLTVTKSSELDSGQYTCRAQTE 386
S++Y + + DSG Y C A TE
Sbjct: 222 SSEYQILTARRE--DSGLYWCEAATE 245
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 20/174 (11%)
Query: 234 KTVVLTCRVFGAP-KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
+TV L C V P W N G T T +IT + DSGEY C +
Sbjct: 17 ETVTLHCEVLHLPGSSSTQWFLN------GTATQTSTPSYRITSASVNDSGEYRC----Q 66
Query: 293 LGTAQGSGSLTVKEHTH-ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
G + S + ++ H + Q G+ RC+A D L ++++ R +
Sbjct: 67 RGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD-KLVYNVLYYRNGKAF- 124
Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
+F N +LT+ K++ +G Y C + + A ++TV+ AP
Sbjct: 125 -----KFFHWNS-NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP 172
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDL 272
P I E P D G+ L C+ G P P + W + K+ +L +G L
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 273 KITDVAFA-----DSGEYTCFARNKLGTA 296
+ D G Y C ARN LG A
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR--RKVGPN--- 180
P P + ++ E T CKA G P P I W G+ + +PR R + P+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 181 ---RITIENLRKSDTGNYGCNATNSLG 204
RI + D G Y C A N LG
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPR-----FVQSND 363
I + P D V G+ AT C A P+ +I W +G E ++ + +PR +
Sbjct: 12 IVEHPSDLIVSKGEPATLNCKAEGRPT--PTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 364 YSLTVT--KSSELDSGQYTCRAQTEL-DFIEAQATLTV 398
+ L + + S D G Y C A+ L + + A+L V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD----- 271
+AP++ + P YT +G V +TC VF P ++W + + L Y+ ++ +
Sbjct: 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 272 -LKITDVAFADSGEYTCFARNKLG 294
L++T + D G Y C A N++G
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIG 100
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD-- 271
++ P I +D + G P+P W + K +T GG+Y + E
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
L+I +DSG YTC +N G+ S LT+K
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 38 VTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHV 94
VT ++ + + V F + G P P IW+KDG I + +S+ G L I
Sbjct: 10 VTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKT 69
Query: 95 EFSDQGSYTCEVSNGVGEAKSYSIDLSVLA 124
+ SD G YTC V N G S S L++ A
Sbjct: 70 DTSDSGLYTCTVKNSAGSVSS-SCKLTIKA 98
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 131 EPEFINAAEEETVT------FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--- 181
+P + ++ TV+ F KA+G P P W +GK I+Q + K+ ++
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ---GGKYKLSEDKGGF 62
Query: 182 -ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ I SD+G Y C NS G V + + A
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 60/180 (33%), Gaps = 30/180 (16%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL 187
TV PE + V C+A+G P + W K I PN + + +
Sbjct: 21 ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI----PNGNT----SELIFNAV 72
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE---------------ITEAPKDEYTVD 232
D G Y C N+ + + + PE I P + +
Sbjct: 73 HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMP 132
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITD-VAFADSGEYTCFARN 291
G T+VL C G+P P W N+ LT ET L + V G Y C N
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFKNELPLTH------ETKKLYMVPYVDLEHQGTYWCHVYN 186
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 23/156 (14%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF 279
+IT P+ + + G+ V L CR G P + W KE+ G T +L V
Sbjct: 20 KITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFNAVHV 74
Query: 280 ADSGEYTCFARNKLG----------------TAQGSGSLTVKEHTHITDQPEDYEVEAGQ 323
D+G Y C N + Q S + I +P ++ G
Sbjct: 75 KDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGS 134
Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
+ +C AV P W + P+ E++ ++
Sbjct: 135 TLVLQCVAVGSPIPHYQ--WFKNELPLTHETKKLYM 168
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 52/146 (35%), Gaps = 22/146 (15%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFS 97
V + + L + V+L C G P Q W K + I GN + LI V
Sbjct: 23 VNPESKAVLAGQFVKLCCRATGHPFVQYQWFK------MNKEIPNGNTSE-LIFNAVHVK 75
Query: 98 DQGSYTCEVSNG---------------VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEET 142
D G Y C V+N + E+ S+D + VEP T
Sbjct: 76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST 135
Query: 143 VTFECKASGLPEPEIHWVHNGKPISQ 168
+ +C A G P P W N P++
Sbjct: 136 LVLQCVAVGSPIPHYQWFKNELPLTH 161
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
L C+ G+P+P W K+ +P+ + K ++ +V+ QG+Y C V N
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLTHETK-------KLYMVPYVDLEHQGTYWCHVYNDRDS 190
Query: 113 AKSYSIDLSV 122
S +++ +
Sbjct: 191 QDSKKVEIII 200
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 21/229 (9%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
P+ P +++V +++ + W P R H V + G+ +RE +
Sbjct: 359 PMRGPRKLEVVEV-KSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDT 417
Query: 461 ESTTTE--VDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTV--QSLEAIPLG 516
E++ + + P + +++ N E+I T E +PG V +S++
Sbjct: 418 ENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELI-VQTDEDLPGAVPTESIQGSTFE 476
Query: 517 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA------ 570
F L+W +P Q GV+ Y+I Y++V + P ++ +S+ + +KL
Sbjct: 477 EKIF-LQWREPTQTYGVITLYEITYKAV--SSFDPEID----LSNQSGRVSKLGNETHFL 529
Query: 571 --GLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNN 617
GL P T Y + T G G + F P TP N
Sbjct: 530 FFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLN 578
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE-------PIDFESEPRFVQSNDYSLT 367
++ EV AGQ ATF+C+A+ ++ +WL+G + I S RF+ S
Sbjct: 172 QNVEVNAGQFATFQCSAIGR-TVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA----SFN 226
Query: 368 VTKSSELDSGQYTCRAQTELDF-IEAQATLTVQVP 401
V +++ D+G+Y C +TE I A L V+ P
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 16/230 (6%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
+PL P+N L D VSW +S GY++ T +G+ E +V+
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWE----RSTTPDITGYRITTTPTNGQQGNSLEEVVHA 56
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSA 519
+S+ T D P + V P I + PE VP + L + + S+
Sbjct: 57 DQSSCT-FDNLSPGLEYNVSVYTVKDDKESVP--ISDTIIPE-VP-QLTDLSFVDITDSS 111
Query: 520 FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
L+W + ++GY+I V + P+ E D + + GLEP Y
Sbjct: 112 IGLRWTPLN--SSTIIGYRITV--VAAGEGIPIFEDF---VDSSVGYYTVTGLEPGIDYD 164
Query: 580 IHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIE 629
I + G+ A + P ++ P+ + ++W P I+
Sbjct: 165 ISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSID 214
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTILETG---DLKITDVA 278
E K++ +G T VL C + A V W + L GG RY++ + G +L+I ++
Sbjct: 13 EDVKNQEAREGATAVLQCELSKAAP--VEWRKGSETLRGGDRYSLRQDGTRCELQIHGLS 70
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVK 305
AD+GEY+C G + S +LTV+
Sbjct: 71 VADTGEYSCVC----GQERTSATLTVR 93
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 16/230 (6%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
+PL P+N L D VSW +S GY++ T +G+ E +V+
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWE----RSTTPDITGYRITTTPTNGQQGNSLEEVVHA 56
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSA 519
+S+ T D P + V P I + PE VP + L + + S+
Sbjct: 57 DQSSCT-FDNLSPGLEYNVSVYTVKDDKESVP--ISDTIIPE-VP-QLTDLSFVDITDSS 111
Query: 520 FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
L+W + ++GY+I V + P+ E D + + GLEP Y
Sbjct: 112 IGLRWTPLN--SSTIIGYRITV--VAAGEGIPIFEDF---VDSSVGYYTVTGLEPGIDYD 164
Query: 580 IHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIE 629
I + G+ A + P ++ P+ + ++W P I+
Sbjct: 165 ISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSID 214
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR------KVG 178
AP F +P+ E ++V EC+ S +P P++ W N + + N R G
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQF---NTDRISLYQDNTG 71
Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
+ I+++ K D G Y +A N G + ++V A
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPINPSDRIS--QGNY 85
+ AP Y + K+V L V+L C P P+ W ++ V N +DRIS Q N
Sbjct: 13 KRAPMFIYKPQSKKV-LEGDSVKLECQISAIPPPKLFWKRNNEMVQFN-TDRISLYQDNT 70
Query: 86 GK-SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV 130
G+ +L+IK V D G YT N G + + L V A P T+
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAG-VTTCNTRLDVTARPNQTL 115
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILE--TG-- 270
AP P+ + ++G +V L C++ P P++ W N + + R ++ + TG
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L I DV D+G YT A N+ G + L V
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-I 182
A P F V+P E ++ F C+ P + W + + + Q+ +R G + +
Sbjct: 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 540
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
TI ++ D G Y A NS G + V++NV
Sbjct: 541 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 205 YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-- 262
Y +D + + P P +G++ CRV + P V W + +EL
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528
Query: 263 ---RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ 297
RY + G L I V D GEYT A+N GT +
Sbjct: 529 YMKRYNGNDYG-LTINRVKGDDKGEYTVRAKNSYGTKE 565
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 23/83 (27%)
Query: 313 QPEDYEVEAGQSATFRCNAVS-----------DPSLKLSIVWLRGSEPIDFESEPRFVQS 361
+P EV GQSA F C ++ D LK S+ +++ R+
Sbjct: 488 KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK-----------RY-NG 535
Query: 362 NDYSLTVTKSSELDSGQYTCRAQ 384
NDY LT+ + D G+YT RA+
Sbjct: 536 NDYGLTINRVKGDDKGEYTVRAK 558
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
T E VPG V L + ++ + W +P + NG+L GY+I ++ T R+ +
Sbjct: 13 THEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNT-----RVTH 67
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
T ++ GL T Y I +A T G G
Sbjct: 68 YLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQG 100
>pdb|2C9A|A Chain A, Crystal Structure Of The Mam-ig Module Of Receptor Protein
Tyrosine Phosphatase Mu
Length = 259
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 12/79 (15%)
Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE-------PIDFESEPRFVQSNDYSLT 367
++ EV AGQ ATF+C+A+ ++ +WL+G + I S RF+ S
Sbjct: 172 QNVEVNAGQFATFQCSAIGR-TVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA----SFN 226
Query: 368 VTKSSELDSGQYTCRAQTE 386
V +++ D+G+Y C +TE
Sbjct: 227 VVNTTKRDAGKYRCXIRTE 245
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/357 (20%), Positives = 137/357 (38%), Gaps = 45/357 (12%)
Query: 65 TIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI--DLS 121
+W +N N G S++I + + G Y + + EA +Y+I +S
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQS---EATNYTILFTVS 136
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV---HNGKPISQAPPNPRRKVG 178
+ +T+ + E + C + +PEP + WV G+ + P +K
Sbjct: 137 IRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK-- 193
Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
+ L +D C A N LG ++ L P+ T P+ V G+ + +
Sbjct: 194 -EEKVLHELFGTDI---RCCARNELGRECTRLFTIDLNQTPQTT-LPQLFLKV-GEPLWI 247
Query: 239 TCRV------FGAPKPEVNWIHNQKELTGGRY----------TILETGDLKITDVAFADS 282
C+ FG + W K L G Y T++ ++ VA D+
Sbjct: 248 RCKAVHVNHGFG-----LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
G YTC + +K + ++ K + T+ EDYE++ + F + P ++ +
Sbjct: 303 GYYTC-SSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT 361
Query: 343 WLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ R S P + + N YS++ + + G+Y A+ + TL ++
Sbjct: 362 FSRKSFPCEQKG-----LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 510 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKL 569
++A L S+ ++W +PE+PNG + GY++ Y V ++ ++D T+ +
Sbjct: 25 VQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKH--NVADSQITT--I 80
Query: 570 AGLEPSTKYRIHLAGYTKAGDG 591
L P Y + + +T GDG
Sbjct: 81 GNLVPQKTYSVKVLAFTSIGDG 102
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
Q P AP + +++ + +V W P+ G +GY+V +T + + N
Sbjct: 16 QAPSSAPRDVQA-RMLSSTTILVQWK--EPEEPNGQIQGYRVY-YTMDPTQHVNNWMKHN 71
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 502
+S T + VP +VLAF +GP S I +T G
Sbjct: 72 VADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTG 115
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
+ LAA T +P + E E+ F C G P P + W+ G+ +S + R +V
Sbjct: 11 TTLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS---TSARHQVTTT 66
Query: 181 R----ITIENLRKSDTGNYGCNATNSLG 204
+ I +++ SD GNY NS G
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVENSEG 94
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILET---GDLK 273
A I P+ +G++ +C G P P V W+ + L T R+ + T +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
I+ V +D G Y+ N G + +LT+++
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
C G P+P W + G ++ S R ++ Y + I V+ SD+G+Y+ V N G+
Sbjct: 36 CDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK 95
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
I +P V G+SA F C+ +P ++ WLR + + + + V + Y T
Sbjct: 16 RILTKPRSMTVYEGESARFSCDTDGEPV--PTVTWLRKGQVLSTSARHQ-VTTTKYKSTF 72
Query: 369 TKSS--ELDSGQYTCRAQTELDFIEAQATLTVQ 399
SS D G Y+ + EA+ TLT+Q
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKIT 275
+ TE ++E V+G T +L C + + V W + L G RY + + G +L+I
Sbjct: 10 KFTEGLRNEEAVEGATAMLWCEL--SKVAPVEWRKGPENLRDGDRYILRQEGTRCELQIC 67
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
+A AD+GEY C G + S +LT++
Sbjct: 68 GLAMADAGEYLCVC----GQERTSATLTIR 93
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 51/134 (38%), Gaps = 32/134 (23%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
S++I + SD G Y C+ + K + DL VL EPE + +VTF C
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKK-NADLQVLKP-----EPELVYEDLRGSVTFHC 239
Query: 148 KASGLPEPEIHWV----------HNGKPI-----SQAPP-------NPRRKVGPNRITIE 185
PE+ V N + +AP NP+ K G + I
Sbjct: 240 ALG----PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVIT 295
Query: 186 NLRKSDTGNYGCNA 199
LRK D G Y C A
Sbjct: 296 GLRKEDAGRYLCGA 309
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 114/315 (36%), Gaps = 78/315 (24%)
Query: 182 ITIENLRKSDTGNYGCNATNSLG----------------YVYKDVYVNVLAHA---PEIT 222
+ I LR SD G Y C A + VY+D+ +V H PE+
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVA 246
Query: 223 EAPK---DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF 279
K + + + VV+ AP E + N ++ G ++++ TG K
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQD-KDGSFSVVITGLRK------ 299
Query: 280 ADSGEYTCFARNKLGTAQGS----GSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVS 333
D+G Y C A + +GS L V E + I P + AG S C N
Sbjct: 300 EDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE 359
Query: 334 DPSLKLSIVW---LRGSEPIDFESEPRFVQSN--------------DYSLTVTKSSELDS 376
S+K +W G P+ +SE +V++ +++ + + + D+
Sbjct: 360 SKSIKYWCLWEGAQNGRCPLLVDSEG-WVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDA 418
Query: 377 GQYTC--------RAQTELDFIEAQATL------------TVQVPLEAPSNFTLIQVIDA 416
G Y C R E+ IE + L T++VP P F+
Sbjct: 419 GFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFS-----SY 473
Query: 417 KKAVVSWNPVSPQSL 431
+K WN Q+L
Sbjct: 474 EKYWCKWNNTGCQAL 488
>pdb|3QS7|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 423
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 133/344 (38%), Gaps = 45/344 (13%)
Query: 65 TIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI--DLS 121
+W +N N G S++I + + G Y + + EA +Y+I +S
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQS---EATNYTILFTVS 136
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV---HNGKPISQAPPNPRRKVG 178
+ +T+ + E + C + +PEP + WV G+ + P +K
Sbjct: 137 IRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK-- 193
Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
+ L +D C A N LG ++ L P+ T P+ V G+ + +
Sbjct: 194 -EEKVLHELFGTDI---RCCARNELGRECTRLFTIDLNQTPQTT-LPQLFLKV-GEPLWI 247
Query: 239 TCRV------FGAPKPEVNWIHNQKELTGGRY----------TILETGDLKITDVAFADS 282
C+ FG + W K L G Y T++ ++ VA D+
Sbjct: 248 RCKAVHVNHGFG-----LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
G YTC + +K + ++ K + T+ EDYE++ + F + P ++ +
Sbjct: 303 GYYTC-SSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT 361
Query: 343 WLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTE 386
+ R S P + + N YS++ + + G+Y A+ +
Sbjct: 362 FSRKSFPCEQKG-----LDNGYSISKFCNHKHQPGEYIFHAEND 400
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 13/239 (5%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP-----EFINAAEEET 142
++ + +E D+G Y CE + + ++L+V+A P +E +++
Sbjct: 78 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 137
Query: 143 VTFEC-KASGLPEPEIHWVHN--GKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGCN 198
+ C A+G P + W G+ Q NP V +R + R++ + C
Sbjct: 138 LVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 197
Query: 199 ATNSLGYVYKDVYVNVLAHAPEIT-EAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQ 256
+ + + +NV + PE+T E + + V LTC+ P E +W
Sbjct: 198 VNYHMDRFKESLTLNV-QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLN 256
Query: 257 KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
L G T K + ++ +G Y C A N +GT G + + E + PE
Sbjct: 257 GSLPKGVEAQNRTLFFK-GPINYSLAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPE 314
>pdb|2HFE|B Chain B, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 211
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH---NGKP---ISQAPPN----PRRKV 177
T P ++ + E V+F C+AS +IHW NG P I A + P R
Sbjct: 4 LTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D NY C +N + + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|1K4D|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|L Chain L, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|A Chain A, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|A Chain A, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|A Chain A, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|1S5H|A Chain A, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
pdb|2BOB|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|1ZWI|B Chain B, Structure Of Mutant Kcsa Potassium Channel
pdb|2ATK|B Chain B, Structure Of A Mutant Kcsa K+ Channel
pdb|2H8P|B Chain B, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|B Chain B, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HJF|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2IH1|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2DWD|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
pdb|2HVJ|B Chain B, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|B Chain B, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|B Chain B, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|B Chain B, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|2NLJ|A Chain A, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
pdb|2P7T|B Chain B, Crystal Structure Of Kcsa Mutant
pdb|2JK5|B Chain B, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
pdb|3GB7|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+ And K+
pdb|3F5W|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|B Chain B, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|B Chain B, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|B Chain B, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|B Chain B, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3HPL|B Chain B, Kcsa E71h-F103a Mutant In The Closed State
pdb|3FB7|B Chain B, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
pdb|3OR6|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
pdb|3OR7|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
pdb|3OGC|B Chain B, Kcsa E71a Variant In Presence Of Na+
pdb|3STL|B Chain B, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
pdb|3STZ|B Chain B, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 212
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH---NGKP---ISQAPPN----PRRKV 177
T P ++ + E V+F C+AS +IHW NG P I A + P R
Sbjct: 4 LTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D NY C +N + + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDV 277
T+ K + +G T L C + + V W + L GGRY++ + G +L+I D+
Sbjct: 12 TQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDL 69
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVK 305
+ AD+GEY+C G + S +LTV+
Sbjct: 70 SVADAGEYSCMC----GQERTSATLTVR 93
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 62/158 (39%), Gaps = 37/158 (23%)
Query: 253 IHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH--- 309
N+ L G T G L + DV AD G YTC R K + S+ +K+
Sbjct: 69 FQNRSHLVGD--TFHNDGSLLLQDVQKADEGIYTCEIRLK------NESMVMKKPVELWV 120
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV-WLRGS------EPI----------DF 352
+ ++P D V G + RC+ S +++ V W+ S E + F
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 353 ESEPRF---------VQSNDYSLTVTKSSELDSGQYTC 381
+S RF + ND S+ + E D G YTC
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTC 218
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 23/184 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN---WIHNQKELTGGRYTILETGDLKIT 275
P+++ P G+ V LTC G EV+ W HN G + L I
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCN--GNNFFEVSSTKWFHN------GSLSEETNSSLNIV 56
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
+ F DSGEY C + A+ + Q V GQ RC+ +
Sbjct: 57 NAKFEDSGEYKCQHQQ---VAESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNW 113
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT-ELDFIEAQA 394
+ +++ + E + + E ++++++T ++ DSG Y C + +LD+
Sbjct: 114 DV-YKVIYYKDGEALKYWYE-------NHAISITNAAAEDSGTYYCTGKVWQLDYESEPL 165
Query: 395 TLTV 398
+TV
Sbjct: 166 NITV 169
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 23/184 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN---WIHNQKELTGGRYTILETGDLKIT 275
P+++ P G+ V LTC G EV+ W HN G + L I
Sbjct: 8 PKVSLNPPWNRIFKGENVTLTCN--GNNFFEVSSTKWFHN------GSLSEETNSSLNIV 59
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
+ F DSGEY C + A+ + Q V GQ RC+ +
Sbjct: 60 NAKFEDSGEYKCQHQQ---VAESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNW 116
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT-ELDFIEAQA 394
+ +++ + E + + E ++++++T ++ DSG Y C + +LD+
Sbjct: 117 DV-YKVIYYKDGEALKYWYE-------NHAISITNAAAEDSGTYYCTGKVWQLDYESEPL 168
Query: 395 TLTV 398
+TV
Sbjct: 169 NITV 172
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDVA 278
E K++ +G T VL C + A V W + L G RY++ + G +L+I +A
Sbjct: 13 EDVKNQEAREGATAVLQCELNSAAP--VEWRKGSETLRDGDRYSLRQDGTKCELQIRGLA 70
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVK 305
AD+GEY+C G + S LTV+
Sbjct: 71 MADTGEYSCVC----GQERTSAMLTVR 93
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDVAFAD 281
+ + +++G T L C + A V W ++ L G R+++ + G +L+I +A AD
Sbjct: 16 RHQESIEGATATLRCELSKAAP--VEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVAD 73
Query: 282 SGEYTCFARNKLGTAQGSGSLTVK 305
+GEY+C G + S +LTVK
Sbjct: 74 AGEYSCVC----GEERTSATLTVK 93
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR----ITIEN 186
+P + E E+ F C G P P + W+ G+ +S + R +V + I +
Sbjct: 14 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS---TSARHQVTTTKYKSTFEISS 70
Query: 187 LRKSDTGNYGCNATNSLG 204
++ SD GNY NS G
Sbjct: 71 VQASDEGNYSVVVENSEG 88
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILET---GDLK 273
+ I P+ +G++ +C G P P V W+ + L T R+ + T +
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
I+ V +D G Y+ N G + +LT+++
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 100
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
C G P+P W + G ++ S R ++ Y + I V+ SD+G+Y+ V N G+
Sbjct: 30 CDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK 89
Query: 113 AKS 115
++
Sbjct: 90 QEA 92
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
+ I +P V G+SA F C+ +P ++ WLR + + + + V + Y T
Sbjct: 9 SRILTKPRSMTVYEGESARFSCDTDGEPV--PTVTWLRKGQVLSTSARHQ-VTTTKYKST 65
Query: 368 VTKSS--ELDSGQYTCRAQTELDFIEAQATLTVQ 399
SS D G Y+ + EA+ TLT+Q
Sbjct: 66 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 99
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 31/227 (13%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
+ AP++ QV + W P + Q GY+V+ T K+ G ++E+ + +
Sbjct: 21 IPAPTDLKFTQVTPTSLSA-QWTPPNVQ-----LTGYRVRV-TPKEKTGPMKEINLAP-D 72
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
S++ V + A+K V A P++ G V +LE + S
Sbjct: 73 SSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-----------GVVTTLENV----SPPR 117
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTKVG--PLLERLPY--ISDPTTTSAKLAGLEPSTK 577
V + + ++ K +++ G +V P + P P S + GL+P T
Sbjct: 118 RARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTD 177
Query: 578 YRIHLAGYTKAGDGAESKYLF--YVPFKNPDNVEGRGSTPNNLVISW 622
Y+I+L YT + S + P N+ +TPN+L++SW
Sbjct: 178 YKIYL--YTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSW 222
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 31/227 (13%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
+ AP++ QV + W P + Q GY+V+ T K+ G ++E+ + +
Sbjct: 2 IPAPTDLKFTQVTPTSLSA-QWTPPNVQ-----LTGYRVRV-TPKEKTGPMKEINLAP-D 53
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
S++ V + A+K V A P++ G V +LE + S
Sbjct: 54 SSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-----------GVVTTLENV----SPPR 98
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTKVG--PLLERLPY--ISDPTTTSAKLAGLEPSTK 577
V + + ++ K +++ G +V P + P P S + GL+P T
Sbjct: 99 RARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTD 158
Query: 578 YRIHLAGYTKAGDGAESKYLF--YVPFKNPDNVEGRGSTPNNLVISW 622
Y+I+L YT + S + P N+ +TPN+L++SW
Sbjct: 159 YKIYL--YTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSW 203
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD---- 271
+ P+I + P+D+ G++V L +V G W+ +K++ + +E +
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L I G YT NKLG+ Q +LTV
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS--NDYSL 366
I PED +V AG+S + ++ W++ + I ESE V++ N L
Sbjct: 9 QIIQFPEDQKVRAGESVELFGKVTG--TQPITCTWMKFRKQIQ-ESEHMKVENSENGSKL 65
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
T+ + + G YT + +L +AQ LTV
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
>pdb|2OZ4|L Chain L, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 214
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH---NGKP---ISQAPPN----PRRKV 177
T P ++ + E V+F C+AS IHW NG P I A + P R
Sbjct: 4 LTQSPAILSVSPGERVSFSCRASQSIGTSIHWFQQRINGSPRLLIEYASESISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G +TI ++ D +Y C +N + + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLTINSVESEDIADYYCQQSNVWPFTFGSGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain
(D1-D3)
Length = 313
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 90/232 (38%), Gaps = 20/232 (8%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
SL + + D+G+YTC ++S I L VLA P T E + + E C
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 139
Query: 148 KAS-GLPEPEIHWVHN--GKP-ISQAPPNPRRKVGPNRITIENL------RKSDTGNYGC 197
++ G P +I W + G P SQ P +T+ +L + D N C
Sbjct: 140 VSTGGRPPAQITWHSDLGGMPNTSQVP-----GFLSGTVTVTSLWILVPSSQVDGKNVTC 194
Query: 198 NATNSLGYVYKDVYVNV-LAHAPEITEAPKDEYTVDGKT-VVLTCRVFGAPKPE-VNWIH 254
+ + + VN+ + + PE++ + D G+ LTC P+P NW
Sbjct: 195 KVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWST 254
Query: 255 NQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L + + + L I V + C N LG Q ++ VKE
Sbjct: 255 TMGPLP--PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKE 304
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 23/184 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN---WIHNQKELTGGRYTILETGDLKIT 275
P+++ P G+ V LTC G EV+ W HN G + L I
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCN--GNNFFEVSSTKWFHN------GSLSEETNSSLNIV 56
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
+ F DSGEY C ++ ++ + + E V GQ RC+ +
Sbjct: 57 NAKFEDSGEYKC-QHQQVNESEPVYLEVFSDWLLLQASAE--VVMEGQPLFLRCHGWRNW 113
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT-ELDFIEAQA 394
+ +++ + E + + E ++++++T ++ DSG Y C + +LD+
Sbjct: 114 DV-YKVIYYKDGEALKYWYE-------NHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165
Query: 395 TLTV 398
+TV
Sbjct: 166 NITV 169
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 23/184 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN---WIHNQKELTGGRYTILETGDLKIT 275
P+++ P G+ V LTC G EV+ W HN G + L I
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCN--GNNFFEVSSTKWFHN------GSLSEETNSSLNIV 56
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
+ F DSGEY C ++ ++ + + E V GQ RC+ +
Sbjct: 57 NAKFEDSGEYKC-QHQQVNESEPVYLEVFSDWLLLQASAE--VVMEGQPLFLRCHGWRNW 113
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT-ELDFIEAQA 394
+ +++ + E + + E ++++++T ++ DSG Y C + +LD+
Sbjct: 114 DV-YKVIYYKDGEALKYWYE-------NHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165
Query: 395 TLTV 398
+TV
Sbjct: 166 NITV 169
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKS 88
RH +Q Y+ + E ++ L F G P PQ +W+K G P++ S + ++
Sbjct: 28 RHL-RQTYIRKVGE------QLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTV 80
Query: 89 LIIKHVEFSDQGSYTCEV 106
++ SD G Y V
Sbjct: 81 FFVRQAARSDSGEYELSV 98
>pdb|3SGJ|C Chain C, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|C Chain C, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 204
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 25/163 (15%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
+EP++ E+++VT +C+ + PE + W HN IS + I+
Sbjct: 12 LEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ---------ASSYFIDAAT 62
Query: 189 KSDTGNYGCNATNSL--GYVYKDVYVN-VLAHAPEITEAPKDEYTVDGKTVVLTCRVF-G 244
D+G Y C S V +V++ +L AP +D + L C +
Sbjct: 63 VDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDP-------IHLRCHSWKN 115
Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V ++ N K GR D I DSG Y C
Sbjct: 116 TALHKVTYLQNGK----GRKYFHHNSDFYIPKATLKDSGSYFC 154
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 220 EITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL-ETGDLKITDV 277
+I P+ Y G +V LTC G P +W G+ T T L + V
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV------EAGQSATFRCNA 331
+F + Y C A + S L I P+D E+ EAG+ T +C +
Sbjct: 62 SFGNEHSYLCTATCE------SRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC-S 114
Query: 332 VSD--PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL-------DSGQ-YTC 381
V+D P +L I L+G + + F++ D TKS E+ D G+ C
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQ---EFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 171
Query: 382 RAQTELDFIEAQATL 396
RA+ +D +++ T+
Sbjct: 172 RAKLHIDEMDSVPTV 186
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDV 277
TE ++E ++G T L C + A V W + L G +Y++ + G +L+I +
Sbjct: 11 TEGLRNEEAMEGATATLQCELSKAAP--VEWRKGLEALRDGDKYSLRQDGAVCELQIHGL 68
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVK 305
A AD+G Y+C G + S +LTV+
Sbjct: 69 AMADNGVYSCVC----GQERTSATLTVR 92
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KPISQAPPNPRRKVGPNRITIE 185
VEPE A TVT C+ P P+IHW+ +G P+ +P ++GP
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQ----- 67
Query: 186 NLRKSDTGNYGCNATNS 202
D G Y C AT+S
Sbjct: 68 -----DQGTYSCVATHS 79
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
P+ G TV LTC V P P+++W+ + G + + L + ++ D G
Sbjct: 17 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD-----GVPLPLPPSPVLILPEIGPQDQGT 71
Query: 285 YTCFARNK 292
Y+C A +
Sbjct: 72 YSCVATHS 79
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 13/230 (5%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP-----EFINAAEEET 142
++ + +E D+G Y CE + + ++L+V+A P +E +++
Sbjct: 78 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 137
Query: 143 VTFEC-KASGLPEPEIHWVHN--GKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGCN 198
+ C A+G P + W G+ Q NP V +R + R++ + C
Sbjct: 138 LVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 197
Query: 199 ATNSLGYVYKDVYVNVLAHAPEIT-EAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQ 256
+ + + +NV + PE+T E + + V LTC+ P E +W
Sbjct: 198 VNYHMDRFKESLTLNV-QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLN 256
Query: 257 KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L G T K + ++ +G Y C A N +GT G + + E
Sbjct: 257 GSLPKGVEAQNRTLFFK-GPINYSLAGTYICEATNPIGTRSGQVEVNITE 305
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 23/184 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN---WIHNQKELTGGRYTILETGDLKIT 275
P+++ P G+ V LTC G EV+ W HN G + L I
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCN--GNNFFEVSSTKWFHN------GSLSEETNSSLNIV 56
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
+ F DSGEY C ++ ++ + + E V GQ RC+ +
Sbjct: 57 NAKFEDSGEYKC-QHQQVNESEPVYLEVFSDWLLLQASAE--VVMEGQPLFLRCHGWRNW 113
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT-ELDFIEAQA 394
+ +++ + E + + E ++++++T ++ DSG Y C + +LD+
Sbjct: 114 DV-YKVIYYKDGEALKYWYE-------NHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165
Query: 395 TLTV 398
+TV
Sbjct: 166 NITV 169
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINA 137
D++S GN +L I V+ D G Y C +S G + K ++ ++ APY + +
Sbjct: 73 DQLSLGN--AALQITDVKLQDAGVYRCMISYGGADYKRITVKVN---APYNKINQRILVV 127
Query: 138 ----AEEETVTFECKASGLPEPEIHW 159
+E E C+A G P+ E+ W
Sbjct: 128 DPVTSEHE---LTCQAEGYPKAEVIW 150
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
+G + I +++ D G Y C + G YK + V V A +I + VD T
Sbjct: 77 LGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRI---LVVDPVTS 132
Query: 237 V--LTCRVFGAPKPEVNWIHNQKELTGGRYT 265
LTC+ G PK EV W + ++ G+ T
Sbjct: 133 EHELTCQAEGYPKAEVIWTSSDHQVLSGKTT 163
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINA 137
D++S GN +L I V+ D G Y C +S G + K ++ ++ APY + +
Sbjct: 73 DQLSLGN--AALQITDVKLQDAGVYRCMISYGGADYKRITVKVN---APYNKINQRILVV 127
Query: 138 ----AEEETVTFECKASGLPEPEIHW 159
+E E C+A G P+ E+ W
Sbjct: 128 DPVTSEHE---LTCQAEGYPKAEVIW 150
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
+G + I +++ D G Y C + G YK + V V A +I + VD T
Sbjct: 77 LGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRI---LVVDPVTS 132
Query: 237 V--LTCRVFGAPKPEVNWIHNQKELTGGRYT 265
LTC+ G PK EV W + ++ G+ T
Sbjct: 133 EHELTCQAEGYPKAEVIWTSSDHQVLSGKTT 163
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINA 137
D++S GN +L I V+ D G Y C +S G + K ++ ++ APY + +
Sbjct: 73 DQLSLGN--AALQITDVKLQDAGVYRCMISYGGADYKRITVKVN---APYNKINQRILVV 127
Query: 138 ----AEEETVTFECKASGLPEPEIHW 159
+E E C+A G P+ E+ W
Sbjct: 128 DPVTSEHE---LTCQAEGYPKAEVIW 150
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE--APKDEYTVDGK 234
+G + I +++ D G Y C + G YK + V V A +I + D T + +
Sbjct: 77 LGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPVTSEHE 135
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRYT 265
LTC+ G PK EV W + ++ G+ T
Sbjct: 136 ---LTCQAEGYPKAEVIWTSSDHQVLSGKTT 163
>pdb|3AY4|C Chain C, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 179
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 25/163 (15%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
+EP++ E+++VT +C+ + PE + W HN IS + I+
Sbjct: 10 LEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS---------YFIDAAT 60
Query: 189 KSDTGNYGCNATNSLGY--VYKDVYVN-VLAHAPEITEAPKDEYTVDGKTVVLTCRVF-G 244
D+G Y C S V +V++ +L AP +D + L C +
Sbjct: 61 VDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEED-------PIHLRCHSWKN 113
Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V ++ N K GR D I DSG Y C
Sbjct: 114 TALHKVTYLQNGK----GRKYFHHNSDFYIPKATLKDSGSYFC 152
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 231 VDGKTVVLTCRV---------FGAPKPEVNWIHNQKELTGGRYTILETG----DLKITDV 277
V+G T +LTCRV + P + + ++K L R ++ + ++DV
Sbjct: 19 VEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV 78
Query: 278 AFADSGEYTC 287
+ +D G+YTC
Sbjct: 79 SLSDEGQYTC 88
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIH---------NQKELTGGRYTILETG----DLK 273
DE V G TVVL C+V + W + ++ L R ++ + +
Sbjct: 47 DETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSIS 106
Query: 274 ITDVAFADSGEYTC 287
I++VA AD GEYTC
Sbjct: 107 ISNVALADEGEYTC 120
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 13/230 (5%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP-----EFINAAEEET 142
++ + +E D+G Y CE + + ++L+V+A P +E +++
Sbjct: 79 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 138
Query: 143 VTFEC-KASGLPEPEIHWVH--NGKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGCN 198
+ C A+G P + W G+ Q NP V +R + R++ + C
Sbjct: 139 LVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 198
Query: 199 ATNSLGYVYKDVYVNVLAHAPEIT-EAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQ 256
+ + + +NV + PE+T E + + V LTC+ P E +W
Sbjct: 199 VNYHMDRFKESLTLNV-QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLN 257
Query: 257 KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L G T K + ++ +G Y C A N +GT G + + E
Sbjct: 258 GSLPKGVEAQNRTLFFK-GPINYSLAGTYICEATNPIGTRSGQVEVNITE 306
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 220 EITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL-ETGDLKITDV 277
+I P+ Y G +V LTC G P +W G+ T T L + V
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV------EAGQSATFRCNA 331
+F + Y C A + S L I P+D E+ EAG+ T +C +
Sbjct: 62 SFGNEHSYLCTATCE------SRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC-S 114
Query: 332 VSD--PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL-------DSGQ-YTC 381
V+D P +L I L+G + + F++ D TKS E+ D G+ C
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQ---EFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 171
Query: 382 RAQTELDFIEAQATL 396
RA+ +D +++ T+
Sbjct: 172 RAKLHIDEMDSVPTV 186
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 13/230 (5%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP-----EFINAAEEET 142
++ + +E D+G Y CE + + ++L+V+A P +E +++
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152
Query: 143 VTFEC-KASGLPEPEIHWVH--NGKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGCN 198
+ C A+G P + W G+ Q NP V +R + R++ + C
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 212
Query: 199 ATNSLGYVYKDVYVNVLAHAPEIT-EAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQ 256
+ + + +NV + PE+T E + + V LTC+ P E +W
Sbjct: 213 VNYHMDRFKESLTLNV-QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLN 271
Query: 257 KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L G T K + ++ +G Y C A N +GT G + + E
Sbjct: 272 GSLPKGVEAQNRTLFFK-GPINYSLAGTYICEATNPIGTRSGQVEVNITE 320
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KPISQAPPNPRRKVGPNRITIE 185
VEPE A TVT C+ P P+IHW+ +G P+ +P ++GP
Sbjct: 6 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQ----- 60
Query: 186 NLRKSDTGNYGCNATNS 202
D G Y C AT+S
Sbjct: 61 -----DQGTYSCVATHS 72
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
P+ G TV LTC V P P+++W+ + G + + L + ++ D G
Sbjct: 10 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD-----GVPLPLPPSPVLILPEIGPQDQGT 64
Query: 285 YTCFARNKLGTAQGSGSLTV 304
Y+C A + Q S ++++
Sbjct: 65 YSCVATHSSHGPQESRAVSI 84
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPI--NPSDRISQGNYGKSLIIKHVEFSDQGSY 102
A+R ++V L C P + W+KDG + +P+ + + + + L++ V+ D G Y
Sbjct: 25 AVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEY 83
Query: 103 TCEVSNGVGEAKSYSIDLS 121
CE+ + E+ S+++ ++
Sbjct: 84 LCEIDD---ESASFTVTVT 99
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTK 370
+ P E + G+ A C+ VS SL +I+W + + + RF V SN+Y L +
Sbjct: 6 NAPTPQEFKEGEDAVIVCDVVS--SLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRG 62
Query: 371 SSELDSGQYTCR----AQTELDFIEAQ 393
+ D G Y C A+ E++F + Q
Sbjct: 63 IKKTDEGTYRCEGRILARGEINFKDIQ 89
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETGDLKITDVAFA 280
AP + +G+ V+ C V + P + W H +++ R+ +L L+I +
Sbjct: 7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT 66
Query: 281 DSGEYTCFAR 290
D G Y C R
Sbjct: 67 DEGTYRCEGR 76
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 220 EITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL-ETGDLKITDV 277
+I P+ Y G +V LTC G P +W G+ T T L + V
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV------EAGQSATFRCNA 331
+F + Y C A + S L I P+D E+ EAG+ T +C +
Sbjct: 62 SFGNEHSYLCTATCE------SRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC-S 114
Query: 332 VSD--PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL-------DSGQ-YTC 381
V+D P +L I L+G + + F++ D TKS E+ D G+ C
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQ---EFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 171
Query: 382 RAQTELDFIEAQATL 396
RA+ +D +++ T+
Sbjct: 172 RAKLHIDEMDSVPTV 186
>pdb|2OR8|A Chain A, Tim-1
pdb|2OR8|B Chain B, Tim-1
Length = 116
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 340 SIVWLRGSEPIDFESEPRF-----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
+++W G + ++ R+ + D SLT+ S E DSG Y CR + F + +
Sbjct: 45 TLIWTNGHR-VTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKV 103
Query: 395 TLTVQVPLE 403
T ++QV E
Sbjct: 104 TFSLQVKPE 112
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment Complexed
With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ ETVT C+ASG + W V+N K ++ P+
Sbjct: 4 MTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G + I +L+ D G Y C+ S + + + V AP ++ P +
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGTYYCHHFWSTPWTFGGGTKLEVKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 73 PINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
P NP D S+++++ +D+G Y C VS + + L VL P ++ P
Sbjct: 73 PRNPLD--------GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNP 124
Query: 133 -EFINAAEEETVTFECKASGLPEPEIHW 159
+ + T+ C A G P P + W
Sbjct: 125 GPALEEGQGLTLAASCTAEGSPAPSVTW 152
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCN-ATNSLGYVYKDVYVNVLAHA-PEITEAP 225
+ PP PR + + + N ++D G Y C +T G + + VL P + P
Sbjct: 68 EQPPPPRNPLD-GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGP 126
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR 263
E G T+ +C G+P P V W K T R
Sbjct: 127 ALEEG-QGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR 163
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDVA 278
E ++E +G T L C + A V W + L G R+++ + G +L+I +A
Sbjct: 13 EGLRNEEATEGDTATLWCELSKAAP--VEWRKGHETLRDGDRHSLRQDGSRCELQIRGLA 70
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVK 305
D+GEY+C G + S +LTV+
Sbjct: 71 VVDAGEYSCVC----GQERTSATLTVR 93
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ ETVT C+ASG + W V+N K ++ P+
Sbjct: 4 MTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G + I +L+ D G+Y C S + + + + AP ++ P +
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPWTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|1T83|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 176
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
+EP++ + E+++VT +C+ + PE W HN IS + I+
Sbjct: 12 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS---------YFIDAAT 62
Query: 189 KSDTGNYGC--NATNSLGYVYKDVYVN-VLAHAPEITEAPKDEYTVDGKTVVLTCRVF-G 244
+D+G Y C N + V +V++ +L AP +D + L C +
Sbjct: 63 VNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDP-------IHLRCHSWKN 115
Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V ++ N K+ R D I DSG Y C
Sbjct: 116 TALHKVTYLQNGKD----RKYFHHNSDFHIPKATLKDSGSYFC 154
>pdb|1E4K|C Chain C, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4J|A Chain A, Crystal Structure Of The Soluble Human Fc-Gamma Receptor
Iii
Length = 176
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
+EP++ + E+++VT +C+ + PE W HN IS + I+
Sbjct: 13 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS---------YFIDAAT 63
Query: 189 KSDTGNYGC--NATNSLGYVYKDVYVN-VLAHAPEITEAPKDEYTVDGKTVVLTCRVF-G 244
+D+G Y C N + V +V++ +L AP +D + L C +
Sbjct: 64 VNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDP-------IHLRCHSWKN 116
Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V ++ N K+ R D I DSG Y C
Sbjct: 117 TALHKVTYLQNGKD----RKYFHHNSDFHIPKATLKDSGSYFC 155
>pdb|1FNL|A Chain A, Crystal Structure Of The Extracellular Domain Of A Human
Fcgriii
Length = 175
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
+EP++ + E+++VT +C+ + PE W HN IS + I+
Sbjct: 12 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS---------YFIDAAT 62
Query: 189 KSDTGNYGC--NATNSLGYVYKDVYVN-VLAHAPEITEAPKDEYTVDGKTVVLTCRVF-G 244
+D+G Y C N + V +V++ +L AP +D + L C +
Sbjct: 63 VNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDP-------IHLRCHSWKN 115
Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+V ++ N K+ R D I DSG Y C
Sbjct: 116 TALHKVTYLQNGKD----RKYFHHNSDFHIPKATLKDSGSYFC 154
>pdb|4G5Z|L Chain L, Crystal Structure Of The Therapeutical Antibody Fragment
Of Canakinumab In Its Unbound State
pdb|4G6J|L Chain L, Crystal Structure Of Human Il-1beta In Complex With The
Therapeutic Antibody Binding Fragment Of Canakinumab
Length = 212
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 24/147 (16%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP------------NPRR 175
T P+F + +E VT C+AS +HW + KP Q+P P R
Sbjct: 4 LTQSPDFQSVTPKEKVTITCRASQSIGSSLHW-YQQKP-DQSPKLLIKYASQSFSGVPSR 61
Query: 176 KVGPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAPKD 227
G +TI +L D Y C+ ++SL + + V + AP + P
Sbjct: 62 FSGSGSGTDFTLTINSLEAEDAAAYYCHQSSSLPFTFGPGTKVDIKRTVAAPSVFIFPPS 121
Query: 228 EYTVDGKTVVLTCRV--FGAPKPEVNW 252
+ + T + C + F + +V W
Sbjct: 122 DEQLKSGTASVVCLLNNFYPREAKVQW 148
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL----------TGGRY 264
L HAP IT + G+ V P EV W HN EL T G
Sbjct: 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
T L+I D DSG Y N G A +L V
Sbjct: 65 T------LEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 82 QGNYGKSLI-IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV-LAAPYFTVEPEFINAAE 139
Q GK+L I V+ D G Y C V G Y L+V + A Y ++ +
Sbjct: 61 QLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPG 117
Query: 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-IENLRKSDTGNYGCN 198
V C+A G P E+ W + P + + + R G ++T + L+ + N+ C
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSCM 175
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKD 227
N AH E+T A D
Sbjct: 176 FWN--------------AHMKELTSAIID 190
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQ 441
VP AP N +L +V ++K ++ W P +P + G GYK++
Sbjct: 17 VPSAAPQNLSL-EVRNSKSIMIHWQPPAPATQNGQITGYKIR 57
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 517 SSAFYLKWV--KPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP 574
S + + W P NG + GYKI+Y+ K ++ + E L T S + GL+
Sbjct: 32 SKSIMIHWQPPAPATQNGQITGYKIRYR--KASRKSDVTETL---VSGTQLSQLIEGLDR 86
Query: 575 STKYRIHLAGYTKAGDGAESKYLFYVPFKN 604
T+Y +A T G G + +L F++
Sbjct: 87 GTEYNFRVAALTINGTGPATDWLSAETFES 116
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 82 QGNYGKSLI-IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV-LAAPYFTVEPEFINAAE 139
Q GK+L I V+ D G Y C V G Y L+V + A Y ++ +
Sbjct: 60 QLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPG 116
Query: 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-IENLRKSDTGNYGCN 198
V C+A G P E+ W + P + + + R G ++T + L+ + N+ C
Sbjct: 117 TGEVQLTCQARGYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSCM 174
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKD 227
N AH E+T A D
Sbjct: 175 FWN--------------AHMKELTSAIID 189
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 515 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVG-PLLERLPYISDPTTTSAKLAGLE 573
+ +++F + WV P P + GY I++ + VG P +R+P P+ S L L
Sbjct: 13 ITANSFTVHWVAPRAP---ITGYIIRHHAEH--SVGRPRQDRVP----PSRNSITLTNLN 63
Query: 574 PSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISW 622
P T+Y + + + P ++E STP +L+ISW
Sbjct: 64 PGTEYVVSIIAVNGREESPPLIGQQATVSDIPRDLEVIASTPTSLLISW 112
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 242 VFGAPKPEVNWIHNQKELTGGRYTILE--------TGDLKITDVAFADSGEYTCFARNKL 293
V G P P ++W+HN + L + +E G L ++G YT A+N L
Sbjct: 29 VRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPL 88
Query: 294 GTA 296
GTA
Sbjct: 89 GTA 91
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 145 FECKASGLPEPEIHWVHNGKPISQA 169
E G P P +HW+HNG+P+ ++
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPLRES 49
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ E+VT CKASG + W V N ++ P+
Sbjct: 4 MTQTPASLSASVGESVTITCKASGNIHNYLAWYQQKGGKSPQLLVFNASTLADGVPSRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G + I +L+ D G+Y C S + + ++ + AP ++ P +
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPFTFGTGTNLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E GG +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQGGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTTTS 203
>pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNN|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
Length = 211
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ ETVT C+ASG + W V+N K + P
Sbjct: 4 MTQTPASLSASVGETVTITCRASGNIYNYLAWYQQKQGKSPQLLVYNAKTLVDGVPLRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G + I +L+ D GNY C+ + Y + + + AP ++ P +
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGNYYCHHFWNTPYTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|1FSK|B Chain B, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|E Chain E, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|H Chain H, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|K Chain K, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
Length = 214
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 35/202 (17%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP------PNPRRKVGPNR 181
T P+ ++ + E VT CKAS + + W KP Q+P P+ R P+R
Sbjct: 4 LTQSPKSMSVSVGERVTLSCKASENVDTYVFWFQQ-KP-DQSPKLLLYGPSNRYTGVPDR 61
Query: 182 -----------ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP-- 225
+TI +++ D +Y C + S Y + + + AP ++ P
Sbjct: 62 FTGSGSTTDFTLTISSVQAEDLADYHCGQSYSYPYTFGGGTKLEIKRADAAPTVSIFPPS 121
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKI 274
++ T G +VV F V W + E G +T ++ D L +
Sbjct: 122 SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL 181
Query: 275 TDVAFADSGEYTCFARNKLGTA 296
T + YTC A +K T+
Sbjct: 182 TKDEYERHNSYTCEATHKTSTS 203
>pdb|2CDE|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|C Chain C, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|E Chain E, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 192
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 33/176 (18%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW---------------IHNQKELTGGRY 264
++ ++P+ ++GK L C +P + W ++ + GRY
Sbjct: 2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 61
Query: 265 TILETGDLK-----ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
T D K IT +DS Y C ++ T G L T +T P D +
Sbjct: 62 TATLDADTKQSSLHITASQLSDSASYICVVSDRGSTL---GRLYFGRGTQLTVWP-DIQK 117
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
R + SD S+ L DF+S+ QS D + +T + LD
Sbjct: 118 PDPAVYQLRDSKSSDKSVCLF---------TDFDSQTNVSQSKDSDVYITDKTVLD 164
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 518 SAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK 577
S+ L W P P+G ++ Y++KY KG + GP R S+ A+L GL+
Sbjct: 22 SSLSLAWAVPRAPSGAVLDYEVKYHE-KGAE-GPSSVRFLKTSE---NRAELRGLKRGAS 76
Query: 578 YRIHLAGYTKAGDG 591
Y + + ++AG G
Sbjct: 77 YLVQVRARSEAGYG 90
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
W + + ++R++ L I ++ D G Y CE+SN V +S SI L ++ P
Sbjct: 143 WLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVT 144
SL+ + + D G YT ++++ ++ V + P+ V + E ++VT
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTV--KELDSVT 129
Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--ITIENLRKSDTGNYGCNATN 201
C ++ + I W+ N + + R + N + I+ +++ D G Y C +N
Sbjct: 130 LTCLSNDIG-ANIQWLFNSQSLQLTE---RMTLSQNNSILRIDPIKREDAGEYQCEISN 184
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 142 TVTFECKASGLPEPEIHWVHNGKP----ISQAPPNPR----------RKVGPNRITIENL 187
+V C+A G P PEI W G+ SQ R + + I+I+ L
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
+ DTG Y C A+N D N L AP +
Sbjct: 98 VEEDTGTYECRASN-------DPDRNHLTRAPRV 124
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 35/117 (29%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
VEL C G+P+P+ W +G P+D SQ G L H+ +Y
Sbjct: 39 VELHCEAVGSPVPEIQWWFEGQ--GPNDICSQLWDGARLDRVHI----HATYHQHA---- 88
Query: 111 GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE-------PEIHWV 160
A + SID V EE+T T+EC+AS P+ P + WV
Sbjct: 89 --ASTISIDTLV----------------EEDTGTYECRASNDPDRNHLTRAPRVKWV 127
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW 252
+H +AP + G +V L C G+P PE+ W
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQW 55
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
W + + ++R++ L I ++ D G Y CE+SN V +S SI L ++ P
Sbjct: 143 WLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVT 144
SL+ + + D G YT ++++ ++ V + P+ V + E ++VT
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTV--KELDSVT 129
Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--ITIENLRKSDTGNYGCNATN 201
C ++ + I W+ N + + R + N + I+ +++ D G Y C +N
Sbjct: 130 LTCLSNDIG-ANIQWLFNSQSLQLTE---RMTLSQNNSILRIDPIKREDAGEYQCEISN 184
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 296 AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
+ GS L HI + ED +V+ G SATFRC
Sbjct: 2 SSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRC 35
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 142 TVTFECKASGLPEPEIHWVHNGKP----ISQAPPNPR----------RKVGPNRITIENL 187
+V C+A G P PEI W G+ SQ R + + I+I+ L
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 188 RKSDTGNYGCNATN 201
+ DTG Y C A+N
Sbjct: 98 VEEDTGTYECRASN 111
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 35/117 (29%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
VEL C G+P+P+ W +G P+D SQ G L H+ +Y
Sbjct: 39 VELHCEAVGSPVPEIQWWFEGQ--GPNDIXSQLWDGARLDRVHI----HATYHQHA---- 88
Query: 111 GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE-------PEIHWV 160
A + SID V EE+T T+EC+AS P+ P + WV
Sbjct: 89 --ASTISIDTLV----------------EEDTGTYECRASNDPDRNHLTRAPRVKWV 127
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW 252
+H +AP + G +V L C G+P PE+ W
Sbjct: 19 SHXAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQW 55
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ---------APPNPRRKVGPNR 181
EPE + E V C SG P + W + ++ A R P
Sbjct: 10 EPE-VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 68
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
IT +++ + DTG Y C + G Y +V V ++
Sbjct: 69 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 103
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTG-------------GRYTILETGDLKITDVAFADS 282
V L+C G P V W +Q + T R T L TG + V D+
Sbjct: 21 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG-ITFKSVTREDT 79
Query: 283 GEYTCFARNKLGTAQG 298
G YTC + G + G
Sbjct: 80 GTYTCMVSEEGGNSYG 95
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
L C+ G+P+P W K+ +P+ + K ++ +V+ QG+Y C V N
Sbjct: 23 LQCVAVGSPIPHYQWFKNELPLTHETK-------KLYMVPYVDLEHQGTYWCHVYNDRDS 75
Query: 113 AKSYSIDLSV 122
S +++ +
Sbjct: 76 QDSKKVEIII 85
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
+I P + + G T+VL C G+P P W N+ LT
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 45
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 22/158 (13%)
Query: 447 DGEGSIRELIVNKGEST--------------TTEVDKFVPASKNFARVLAFNGAYNGPPS 492
DG I+ IV K EST + +VD+ + RVLA N G P+
Sbjct: 32 DGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPA 91
Query: 493 EIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGP 551
E V P + + + ++ L W KPE G ++GY ++ Q+ KG+
Sbjct: 92 ETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQT-KGS---- 146
Query: 552 LLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAG 589
++ + T A + GL +Y ++ + G
Sbjct: 147 --DKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKG 182
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 21 ATGISASQNRHAPK--QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG-----VP 73
+TGI NR P+ Q + K V +R + ++ C + + K G +P
Sbjct: 172 STGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP 231
Query: 74 INPSDRISQGNYGK---SLIIKHVEFSDQGSYTCEVSNGVG 111
+N SD Q NY K +L + V+F D G Y+C SN VG
Sbjct: 232 LN-SD--FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG 269
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L + V F D+G Y+C A N +GT + + V E
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 21 ATGISASQNRHAPK--QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG-----VP 73
+TGI NR P+ Q + K V +R + ++ C + + K G +P
Sbjct: 172 STGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP 231
Query: 74 INPSDRISQGNYGK---SLIIKHVEFSDQGSYTCEVSNGVG 111
+N SD Q NY K +L + V+F D G Y+C SN VG
Sbjct: 232 LN-SD--FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG 269
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 517 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576
++ +L W +P++PNG+++ Y++ Y+ ++ R + + +L GL P
Sbjct: 825 NNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALE---RGCRLRGLSPGN 881
Query: 577 KYRIHLAGYTKAGDGA--ESKYLFYVPFKN-PDNV 608
Y + + + AG+G+ E Y + + + P N+
Sbjct: 882 -YSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNI 915
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 517 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576
++ +L W +P++PNG+++ Y++ Y+ ++ R + + +L GL P
Sbjct: 806 NNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALE---RGCRLRGLSPGN 862
Query: 577 KYRIHLAGYTKAGDGA--ESKYLFYVPFKN-PDNV 608
Y + + + AG+G+ E Y + + + P N+
Sbjct: 863 -YSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNI 896
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 430 SLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNG 489
S G+FRGY+ EK GEG I V + E+D A KN + +G+++
Sbjct: 1133 SATGYFRGYQADMDWEK-GEGDIFPYFVFGAACSEVEIDCLTGAHKNIRTDIVMDGSFSI 1191
Query: 490 PPS 492
P+
Sbjct: 1192 NPA 1194
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
S+ + +++ SD G+Y C+V G A + L+VL P T F++ +EE F+
Sbjct: 87 SINVTNLQLSDIGTYQCKVKKAPGVANKKFL-LTVLVKPSGTR--CFVDGSEEIGNDFKL 143
Query: 148 KA----SGLPEPEIHWVHNGKPISQAPPNP-RRKVGPNRITIENLRKSDTGNYGCNATNS 202
K LP + W SQ P P ++ I+++N +G Y C N
Sbjct: 144 KCEPKEGSLPL-QFEWQKLSD--SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNR 200
Query: 203 LG 204
+G
Sbjct: 201 VG 202
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 4/137 (2%)
Query: 267 LETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
+++GD + +T++ +D G Y C + G A LTV T D E G
Sbjct: 81 VKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGND 140
Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
+C + SL L W + S+ + P + ++V +S SG Y+C Q
Sbjct: 141 FKLKCEP-KEGSLPLQFEWQKLSDSQTMPT-PWLAEMTSPVISVKNASSEYSGTYSCTVQ 198
Query: 385 TELDFIEAQATLTVQVP 401
+ + L V P
Sbjct: 199 NRVGSDQCMLRLDVVPP 215
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 176 KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKT 235
K G I + NL+ SD G Y C + G K + VL P T D G
Sbjct: 82 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-PSGTRCFVDGSEEIGND 140
Query: 236 VVLTCRVFGAPKP-EVNW--IHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
L C P + W + + + + + + + + + + SG Y+C +N+
Sbjct: 141 FKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNR 200
Query: 293 LGTAQGSGSLTV 304
+G+ Q L V
Sbjct: 201 VGSDQCMLRLDV 212
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
S+ + +++ SD G+Y C+V G A + L+VL P T F++ +EE F+
Sbjct: 85 SINVTNLQLSDIGTYQCKVKKAPGVANKKFL-LTVLVKPSGTR--CFVDGSEEIGNDFKL 141
Query: 148 KAS----GLPEPEIHWVHNGKPISQAPPNP-RRKVGPNRITIENLRKSDTGNYGCNATNS 202
K LP + W SQ P P ++ I+++N +G Y C N
Sbjct: 142 KCEPKEGSLPL-QFEWQKLSD--SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNR 198
Query: 203 LG 204
+G
Sbjct: 199 VG 200
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 176 KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKT 235
K G I + NL+ SD G Y C + G K + VL P T D G
Sbjct: 80 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-PSGTRCFVDGSEEIGND 138
Query: 236 VVLTCRVFGAPKP-EVNW--IHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
L C P + W + + + + + + + + + + SG Y+C +N+
Sbjct: 139 FKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNR 198
Query: 293 LGTAQGSGSLTV 304
+G+ Q L V
Sbjct: 199 VGSDQCMLRLDV 210
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 4/137 (2%)
Query: 267 LETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
+++GD + +T++ +D G Y C + G A LTV T D E G
Sbjct: 79 VKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGND 138
Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
+C + SL L W + S+ + P + ++V +S SG Y+C Q
Sbjct: 139 FKLKCEP-KEGSLPLQFEWQKLSDSQTMPT-PWLAEMTSPVISVKNASSEYSGTYSCTVQ 196
Query: 385 TELDFIEAQATLTVQVP 401
+ + L V P
Sbjct: 197 NRVGSDQCMLRLDVVPP 213
>pdb|2J88|L Chain L, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 213
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 32/200 (16%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ ETVT C+AS + W V+N K +++ P+
Sbjct: 4 MTQSPASLSASVGETVTITCRASENIYSYLTWYQQKQGKSPQLLVYNAKTLAEGVPSRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCN---ATNSLGYVYKDVYVNVLAHAPEITEAP--KD 227
G + I +L+ D GNY C T + G + + + AP ++ P +
Sbjct: 64 GSGSGTQFSLKISSLQPEDFGNYYCQHHYGTRTFGGGTR-LEIKRADAAPTVSIFPPSSE 122
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 123 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 182
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 183 DEYERHNSYTCEATHKTSTS 202
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 560
+ VPG + + +++ L W P PNG+++ Y+I ++ T +E L
Sbjct: 25 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVL---- 80
Query: 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL 597
P+ GL+P + Y + T+ G G ++ L
Sbjct: 81 APSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 77 SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
S+ S Y L + ++ ++ G+YT VSN ++ ++ Y +PE +
Sbjct: 365 SENESNIRYVSELHLTRLKGTEGGTYTFLVSNS-------DVNAAIAFNVYVNTKPEILT 417
Query: 137 AAEEETVTFECKASGLPEPEIHW 159
+C A+G PEP I W
Sbjct: 418 YDRLVNGMLQCVAAGFPEPTIDW 440
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 20/180 (11%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV---DGKTVVL 238
+TI + R +D+G + C A N+ G + V+ I P TV DG+ V L
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG-FINIFPMINTTVFVNDGENVDL 333
Query: 239 TCRVFGAPKPE-VNWIHNQKELTG---------GRYTILETGDLKITDVAFADSGEYTCF 288
PKPE WI+ + T I +L +T + + G YT
Sbjct: 334 IVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFL 393
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE 348
N A + + ++ +PE + + +C A P + + G+E
Sbjct: 394 VSNSDVNA------AIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTE 447
>pdb|3BQU|C Chain C, Crystal Structure Of The 2f5 Fab'-3h6 Fab Complex
Length = 233
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 31/199 (15%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKP--ISQAPPNPRRKVGPNRI-- 182
T P ++ + E VT C S + +++W G+P + + N R P+R
Sbjct: 27 TQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSS 86
Query: 183 ---------TIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KDE 228
TIEN+ D +Y C +++L Y + ++ + AP ++ P ++
Sbjct: 87 SGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQ 146
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITDV 277
T G +VV F V W + E G +T ++ D L +T
Sbjct: 147 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKD 206
Query: 278 AFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 207 EYERHNSYTCEATHKTSTS 225
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 515 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP 574
+ +++F + W+ P + GY+I++ + P +R+P+ + S L L P
Sbjct: 197 ITANSFTVHWIAPR---ATITGYRIRHHPEHFSG-RPREDRVPH----SRNSITLTNLTP 248
Query: 575 STKYRIHLAGYTKAGDGAESKYLFY----VPFKNPDNVEGRGSTPNNLVISWTA 624
T+Y + + A +G E L P ++E +TP +L+ISW A
Sbjct: 249 GTEYVVSIV----ALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDA 298
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 19/182 (10%)
Query: 414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPA 473
I A V W ++P R GY+++ E G RE V ++ T + P
Sbjct: 197 ITANSFTVHW--IAP---RATITGYRIRHHPEH-FSGRPREDRVPHSRNSIT-LTNLTPG 249
Query: 474 SKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV 533
++ ++A NG P I T VP ++ + A P ++ + W + P
Sbjct: 250 TEYVVSIVALNGREESP-LLIGQQSTVSDVPRDLEVVAATP---TSLLISW---DAPAVT 302
Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
+ Y+I Y G P+ E + + ++A ++GL+P Y I + T GD
Sbjct: 303 VRYYRITYGETGGNS--PVQE---FTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA 357
Query: 594 SK 595
S
Sbjct: 358 SS 359
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 495 ISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE 554
I +T GVPG + +A P ++ L W P + + Y++ Y K G E
Sbjct: 9 IQVITQTGVPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVY------KDGEHGE 60
Query: 555 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+P TS +L GL+P++ Y LA + G GA +
Sbjct: 61 EQRITIEP-GTSYRLQGLKPNSLYYFRLAARSPQGLGAST 99
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTILETG---DLKI 274
P P+ V G L C V G P P V W ++L R + G L +
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
T D+G Y C ARN G A + ++TV E
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 106
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 21 ATGISASQNRHAPKQQYVTRKKEV-ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR 79
+ + AS ++ R + V + + EL C+ G P P +W K G + S+R
Sbjct: 1 GSSMKASSGDQGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASER 60
Query: 80 ISQGNYGKS--LIIKHVEFSDQGSYTCEVSN 108
+S G L++ +D G Y C N
Sbjct: 61 LSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKS 371
+P V +G A +C + +P +VW +G + + F ++ L +T +
Sbjct: 20 RPRPVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLAASERLSFPADGAEHGLLLTAA 77
Query: 372 SELDSGQYTCRAQTELDFIEAQATLTVQVP 401
D+G Y CRA+ A A +TV P
Sbjct: 78 LPTDAGVYVCRARNAAGEAYAAAAVTVLEP 107
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 59 GTPLPQTIWSKDGVPINPSDRI----SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114
G P P+ W K+GV I SDRI + N + L+I+ V D S + N GE
Sbjct: 31 GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE-LVIRDVTGEDSASIMVKAINIAGETS 89
Query: 115 SYSIDL 120
S++ L
Sbjct: 90 SHAFLL 95
>pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
pdb|1NN8|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|S Chain S, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|T Chain T, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 88/230 (38%), Gaps = 20/230 (8%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
SL + + D+G+YTC ++S I L VLA P T E + + E C
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 139
Query: 148 KAS-GLPEPEIHWVHN--GKP-ISQAPPNPRRKVGPNRITIENL------RKSDTGNYGC 197
++ G P +I W + G P SQ P +T+ +L + D N C
Sbjct: 140 VSTGGRPPAQITWHSDLGGMPNTSQVP-----GFLSGTVTVTSLWILVPSSQVDGKNVTC 194
Query: 198 NATNSLGYVYKDVYVNV-LAHAPEITEAPKDEYTVDGKT-VVLTCRVFGAPKPE-VNWIH 254
+ + + VN+ + + PE++ + D G+ LTC P+P NW
Sbjct: 195 KVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWST 254
Query: 255 NQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
L + + + L I V + C N LG Q ++ V
Sbjct: 255 TMGPLP--PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 77 SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
S+ S Y L + ++ ++ G+YT VSN ++ ++ Y +PE +
Sbjct: 340 SENESNIRYVSELHLTRLKGTEGGTYTFLVSNS-------DVNAAIAFNVYVNTKPEILT 392
Query: 137 AAEEETVTFECKASGLPEPEIHW 159
+C A+G PEP I W
Sbjct: 393 YDRLVNGMLQCVAAGFPEPTIDW 415
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 20/180 (11%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV---DGKTVVL 238
+TI + R +D+G + C A N+ G + V+ I P TV DG+ V L
Sbjct: 250 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG-FINIFPMINTTVFVNDGENVDL 308
Query: 239 TCRVFGAPKPE-VNWIHNQKELTG---------GRYTILETGDLKITDVAFADSGEYTCF 288
PKPE WI+ + T I +L +T + + G YT
Sbjct: 309 IVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFL 368
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE 348
N A + + ++ +PE + + +C A P + + G+E
Sbjct: 369 VSNSDVNA------AIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTE 422
>pdb|2PO6|C Chain C, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|G Chain G, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|3SDX|E Chain E, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|G Chain G, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 204
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 33/176 (18%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW---------------IHNQKELTGGRY 264
++ ++P+ ++GK L C +P + W ++ + GRY
Sbjct: 2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 61
Query: 265 TILETGDLK-----ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
T D K IT +DS Y C ++ T G L T +T P D +
Sbjct: 62 TATLDADTKQSSLHITASQLSDSASYICVVSDRGSTL---GRLYFGRGTQLTVWP-DIQN 117
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
R + SD S+ L DF+S+ QS D + +T LD
Sbjct: 118 PDPAVYQLRDSKSSDKSVCLF---------TDFDSQTNVSQSKDSDVYITDKCVLD 164
>pdb|2EYR|A Chain A, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
pdb|2EYS|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|C Chain C, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 210
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 33/176 (18%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW---------------IHNQKELTGGRY 264
++ ++P+ ++GK L C +P + W ++ + GRY
Sbjct: 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 64
Query: 265 TILETGDLK-----ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
T D K IT +DS Y C ++ T G L T +T P D +
Sbjct: 65 TATLDADTKQSSLHITASQLSDSASYICVVSDRGSTL---GRLYFGRGTQLTVWP-DIQN 120
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
R + SD S+ L DF+S+ QS D + +T LD
Sbjct: 121 PDPAVYQLRDSKSSDKSVCLF---------TDFDSQTNVSQSKDSDVYITDKCVLD 167
>pdb|3HUJ|E Chain E, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|G Chain G, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|C Chain C, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 209
Score = 33.1 bits (74), Expect = 0.61, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 33/176 (18%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW---------------IHNQKELTGGRY 264
++ ++P+ ++GK L C +P + W ++ + GRY
Sbjct: 4 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 63
Query: 265 TILETGDLK-----ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
T D K IT +DS Y C ++ T G L T +T P D +
Sbjct: 64 TATLDADTKQSSLHITASQLSDSASYICVVSDRGSTL---GRLYFGRGTQLTVWP-DIQN 119
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
R + SD S+ L DF+S+ QS D + +T LD
Sbjct: 120 PDPAVYQLRDSKSSDKSVCLF---------TDFDSQTNVSQSKDSDVYITDKCVLD 166
>pdb|3TYF|A Chain A, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|C Chain C, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|A Chain A, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|G Chain G, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 213
Score = 33.1 bits (74), Expect = 0.61, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 33/176 (18%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW---------------IHNQKELTGGRY 264
++ ++P+ ++GK L C +P + W ++ + GRY
Sbjct: 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 64
Query: 265 TILETGDLK-----ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
T D K IT +DS Y C ++ T G L T +T P D +
Sbjct: 65 TATLDADTKQSSLHITASQLSDSASYICVVSDRGSTL---GRLYFGRGTQLTVWP-DIQN 120
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
R + SD S+ L DF+S+ QS D + +T LD
Sbjct: 121 PDPAVYQLRDSKSSDKSVCLF---------TDFDSQTNVSQSKDSDVYITDKCVLD 167
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTILETG---DLKI 274
P P+ V G L C V G P P V W ++L R + G L +
Sbjct: 15 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
T D+G Y C ARN G A + ++TV E
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 106
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVS 107
+ EL C+ G P P +W K G + S+R+S G L++ +D G Y C
Sbjct: 31 EAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 90
Query: 108 N 108
N
Sbjct: 91 N 91
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKSS 372
P V +G A +C + +P +VW +G + + F ++ L +T +
Sbjct: 21 PRPVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLAASERLSFPADGAEHGLLLTAAL 78
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVP 401
D+G Y CRA+ A A +TV P
Sbjct: 79 PTDAGVYVCRARNAAGEAYAAAAVTVLEP 107
>pdb|4DGI|L Chain L, Structure Of Pom1 Fab Fragment Complexed With Human Prpc
Fragment 120- 230
Length = 213
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 35/202 (17%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH---NGKP---ISQAPPN----PRRKV 177
T P ++ + E V+F C+AS IHW N P I A + P R
Sbjct: 4 LTQSPAILSVSPGERVSFSCRASQNIGTSIHWYQQRTNESPRLIIKYASESISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D +Y C +N+ Y + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVESEDIADYYCQQSNTWPYTFGGGTKLELKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-------------RYTILETGDLKI 274
+ T G +VV F V W + E G Y++ T L +
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSETDQDSKDSTYSMSST--LTL 181
Query: 275 TDVAFADSGEYTCFARNKLGTA 296
T + YTC A +K T+
Sbjct: 182 TKDEYERHNTYTCEATHKTSTS 203
>pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 214
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 74/200 (37%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ ETVT C+AS + W V+N K + + P+
Sbjct: 4 MTQSPASLSASVGETVTITCRASKNIYSYLAWYQQKQGKSPQLLVYNAKTLGEGVPSRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G + I +L+ D G+Y C Y + + + AP ++ P +
Sbjct: 64 GSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPYTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGD---LKITD 276
I + +D++ G+ V L C + A P V+W+ ++K + +Y ++ G L I
Sbjct: 11 IIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRG 69
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ D+GEYTC ++ ++ + SL V+E
Sbjct: 70 ASLKDAGEYTC----EVEASKSTASLHVEE 95
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 95/247 (38%), Gaps = 48/247 (19%)
Query: 90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSI----DLSVLAAPYF-------TVEPEFINAA 138
I + E + G+YTC SNG+ + + L ++ P F V +
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQ 119
Query: 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS-DTGNYGC 197
+ EC LP ++ +V PNP K G ITI+N++++ C
Sbjct: 120 VSQYSLIECDGKSLPT-DLTFV----------PNP--KAG---ITIKNVKRAYHRLCVRC 163
Query: 198 NATNSLGYVYKDVYVNVLAHA---------PEITEAPK--DEYTV-----DGKTVVLTCR 241
A +++ D + + A PE + K D +TV D T V +
Sbjct: 164 AAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMW 223
Query: 242 VFGAPKPE--VNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGS 299
+ P+P+ HN Y ET L I+ DSG + C+A N G+A +
Sbjct: 224 LKMNPQPQHIAQVKHNSWHRGDFNYERQET--LTISSARVDDSGVFMCYANNTFGSANVT 281
Query: 300 GSLTVKE 306
+L V E
Sbjct: 282 TTLKVVE 288
>pdb|3URO|R Chain R, Poliovirus Receptor Cd155 D1d2
Length = 221
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
SL + + D+GSYTC ++S I L VLA P T E + + E C
Sbjct: 79 SLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 138
Query: 148 KAS-GLPEPEIHW 159
++ G P +I W
Sbjct: 139 VSTGGRPPAQITW 151
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 390 IEAQATLTVQVPLEAPSNFTLI-QVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
+ A T VP P + T++ + K +V+W P P G GY + T+ +
Sbjct: 94 MTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQP--PSEANGKITGYIIYYSTDVNA 151
Query: 449 EGSIRELIVNK--GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 502
E I + ++ G T ++ + + + ++ A N GP SE + F TP+
Sbjct: 152 E--IHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 205
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 392 AQATLTVQVPLEAPSNFTLI-QVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
A T VP P + T++ + K +V+W P P G GY + T+ + E
Sbjct: 9 AHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQP--PSEANGKITGYIIYYSTDVNAE- 65
Query: 451 SIRELIVNK--GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
I + ++ G T ++ + + + ++ A N GP SE + F TP+
Sbjct: 66 -IHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 117
>pdb|3EPC|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 1
pdb|3EPD|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
pdb|3EPF|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 2
Length = 213
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
SL + + D+GSYTC ++S I L VLA P T E + + E C
Sbjct: 78 SLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 137
Query: 148 KAS-GLPEPEIHW 159
++ G P +I W
Sbjct: 138 VSTGGRPPAQITW 150
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTILETG---DLKI 274
P P+ V G L C V G P P V W ++L R + G L +
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
T D+G Y C ARN G A + ++TV E
Sbjct: 74 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVS 107
+ EL C+ G P P +W K G + S+R+S G L++ +D G Y C
Sbjct: 30 EAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 89
Query: 108 N 108
N
Sbjct: 90 N 90
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKSS 372
P V +G A +C + +P +VW +G + + F ++ L +T +
Sbjct: 20 PRPVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLAASERLSFPADGAEHGLLLTAAL 77
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVP 401
D+G Y CRA+ A A +TV P
Sbjct: 78 PTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 215
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPN-PRRKV 177
T P ++ ++V+ C+AS +HW K SQ+ P R
Sbjct: 5 LTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 64
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D G Y C +NS Y + + + AP ++ P +
Sbjct: 65 GSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSE 124
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 125 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 184
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 185 DEYERHNSYTCEATHKTSTS 204
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFIN 136
D I+ G +L I +V SD G Y C +G K+ ++L V A VE +
Sbjct: 76 DGITAGK--AALRIHNVTASDSGKYLCYFQDGDFYEKAL-VELKVAALGSNLHVE---VK 129
Query: 137 AAEEETVTFECKASG-LPEPEIHW 159
E+ + EC+++G P+P+I W
Sbjct: 130 GYEDGGIHLECRSTGWYPQPQIQW 153
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 145 FECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVG-PNRITIENLRKSDTGNYGCNATNS 202
F C A G PE I W + G+ I +K G +R+TI N D G Y C AT++
Sbjct: 20 FTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78
Query: 203 LG 204
G
Sbjct: 79 KG 80
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 508 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 565
Q+L L +S L W P + NG ++ Y + ++ + + L I+ T T
Sbjct: 13 QNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ------QELQNIT--TDT 64
Query: 566 SAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
L GL+P T Y I + +T G G S
Sbjct: 65 RFTLTGLKPDTTYDIKVRAWTSKGSGPLS 93
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 67 WSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSYT 103
W K+GV + PS RI+ + G+ L+I V D+G YT
Sbjct: 41 WYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYT 79
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 214
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPN-PRRKV 177
T P ++ ++V+ C+AS +HW K SQ+ P R
Sbjct: 4 LTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D G Y C +NS Y + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|4F8T|A Chain A, Crystal Structure Of The Human Btn3a3 Ectodomain
Length = 226
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFIN 136
D I+ G +L I +V SD G Y C +G K+ ++L V A +E +
Sbjct: 76 DGITAGK--AALRIHNVTASDSGKYLCYFQDGDFYEKAL-VELKVAALGSDLHIE---VK 129
Query: 137 AAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN---LRKSDT 192
E+ + EC+++G P+P+I W A P G + +R S
Sbjct: 130 GYEDGGIHLECRSTGWYPQPQIKWSDTKGENIPAVEAPVVADGVGLYAVAASVIMRGSSG 189
Query: 193 GNYGCNATNSL 203
G C NSL
Sbjct: 190 GGVSCIIRNSL 200
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 88 SLIIKHVEFSDQGSYTCE-VSNGVGEAKSYSIDLSVLAAPYFTV--EPEFINAAEEETVT 144
++ + ++ FSD G Y C+ V+ +G A+S S ++VL P ++ P+ + ETV
Sbjct: 75 TITLHNIGFSDSGKYICKAVTFPLGNAQS-STTVTVLVEPTVSLIKGPDSLIDGGNETVA 133
Query: 145 FEC-KASGLPEPEIHW 159
C A+G P I W
Sbjct: 134 AICIAATGKPVAHIDW 149
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 182 ITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDG--KTVVL 238
IT+ N+ SD+G Y C A T LG V VL P ++ + +DG +TV
Sbjct: 76 ITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVE-PTVSLIKGPDSLIDGGNETVAA 134
Query: 239 TC-RVFGAPKPEVNWIHNQKEL 259
C G P ++W + E+
Sbjct: 135 ICIAATGKPVAHIDWEGDLGEM 156
>pdb|3E8U|H Chain H, Crystal Structure And Thermodynamic Analysis Of Diagnostic
Fab 106.3 Complexed With Bnp 5-13 (C10a) Reveal Basis Of
Selective Molecular Recognition
Length = 217
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 53/158 (33%), Gaps = 34/158 (21%)
Query: 141 ETVTFECKASGL-------------PEPEIHWV-----HNGKPISQAPPNPR------RK 176
ETV CK SG P ++ W+ H G+PI R
Sbjct: 16 ETVKISCKGSGYTFTHYGINWVKQTPSKDLKWMGWINTHTGEPIYADDFKGRFAFSLETS 75
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE------APKDEYT 230
+ I NL D G Y C ++ G Y +V + + T AP
Sbjct: 76 ANTAYLQINNLNNGDMGTYFCTRSHRFGLDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAA 135
Query: 231 VDGKTVVLTCRVFGA-PKP-EVNWIHNQKELTGGRYTI 266
V L C V G P+P V W N L+ G +T
Sbjct: 136 AAASMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVHTF 171
>pdb|1AHW|A Chain A, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1AHW|D Chain D, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1FGN|L Chain L, Monoclonal Murine Antibody 5g9-Anti-Human Tissue Factor
Length = 214
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 72/201 (35%), Gaps = 33/201 (16%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP-----------ISQAPPNPRRK 176
T P + A+ E VT CKAS ++W + KP S A P R
Sbjct: 4 MTQSPSSMYASLGERVTITCKASQDIRKYLNW-YQQKPWKSPKTLIYYATSLADGVPSRF 62
Query: 177 VGPN-----RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--K 226
G +TI +L DT Y C Y + + +N AP ++ P
Sbjct: 63 SGSGSGQDYSLTISSLESDDTATYYCLQHGESPYTFGGGTKLEINRADAAPTVSIFPPSS 122
Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKIT 275
++ T G +VV F V W + E G +T ++ D L +T
Sbjct: 123 EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 182
Query: 276 DVAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 183 KDEYERHNSYTCEATHKTSTS 203
>pdb|4F2M|B Chain B, Crystal Structure Of A Tgev Coronavirus Spike Fragment In
Complex With The Tgev Neutralizing Monoclonal Antibody
1af10
pdb|4F2M|D Chain D, Crystal Structure Of A Tgev Coronavirus Spike Fragment In
Complex With The Tgev Neutralizing Monoclonal Antibody
1af10
Length = 214
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 73/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH---NGKP---ISQAPPN----PRRKV 177
T P ++ + E V+ C+AS IHW NG P I A + P R
Sbjct: 4 LTQSPAILSVSPGERVSLSCRASQSIGTSIHWYQQRTNGSPRPLIKYASESISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G + I ++ D +Y C T+S + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLNINSVESEDIADYFCQQTDSWPTTFGAGTKLELKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 32/170 (18%)
Query: 62 LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121
LP+ W KD P+ D I LI+ +V +G+YTC S K Y I
Sbjct: 138 LPKLQWYKDCKPL-LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL-GKQYPITRV 195
Query: 122 VLAAPYFTVE------PEFINAAEE-------ETVTFECKASGLPEPEIHWVHNGKPISQ 168
+ + T+E P ++ A E + C +G +W NG I +
Sbjct: 196 I---EFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 252
Query: 169 APP----------NPRRKVGPNRITIENLRKSDTGNYG----CNATNSLG 204
P NP K IT+ N+ + ++ Y C A N+ G
Sbjct: 253 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302
>pdb|1XIW|A Chain A, Crystal Structure Of Human Cd3-ED DIMER IN COMPLEX WITH A
Ucht1 Single-Chain Antibody Fragment
pdb|1XIW|E Chain E, Crystal Structure Of Human Cd3-ED DIMER IN COMPLEX WITH A
Ucht1 Single-Chain Antibody Fragment
Length = 105
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG---GRYTILETGDLKITDV 277
IT+ P + ++ G TV+LTC + P E+ W HN K + G + + L + +
Sbjct: 10 ITQTPY-KVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF 66
Query: 278 A-FADSGEYTCFAR 290
+ SG Y C+ R
Sbjct: 67 SELEQSGYYVCYPR 80
>pdb|2D9C|A Chain A, Solution Structure Of The First Ig-Like Domain Of Signal-
Regulatory Protein Beta-1 (Sirp-Beta-1)
Length = 136
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 313 QPE-DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGS----EPIDFESEPRFVQSN----- 362
QPE V AG+SAT RC S + I+W RG+ E I + E F +
Sbjct: 13 QPEKSVSVAAGESATLRCAMTSLIPVG-PIMWFRGAGAGRELIYNQKEGHFPRVTTVSEL 71
Query: 363 ------DYSLTVTKSSELDSGQYTC 381
D+S++++ + D+G Y C
Sbjct: 72 TKRNNLDFSISISNITPADAGTYYC 96
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVK-GTKVGPLLERLPYISDPTTT 565
V++L+A+ ++ + W P NG + GY++ V G + ++ L Y
Sbjct: 11 VENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSY------- 63
Query: 566 SAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
KL GL+ T+Y + Y + G G +
Sbjct: 64 --KLEGLKKFTEYSLRFLAYNRYGPGVST 90
>pdb|1JRH|H Chain H, Complex (AntibodyANTIGEN)
Length = 219
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 272 LKITDVAFADSGEYTC-----FARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSA- 325
LKIT VA AD+ Y C F N G G+ TV + T P Y + G +A
Sbjct: 82 LKITSVATADTATYYCARRAPFYGNHAMDYWGQGT-TVTVSSAKTTPPSVYPLAPGSAAQ 140
Query: 326 -----TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
T C +++ W GS + P +QS+ Y+L
Sbjct: 141 TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL 186
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 32/170 (18%)
Query: 62 LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121
LP+ W KD P+ D I LI+ +V +G+YTC S K Y I
Sbjct: 138 LPKLQWYKDCKPL-LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL-GKQYPITRV 195
Query: 122 VLAAPYFTVE------PEFINAAEE-------ETVTFECKASGLPEPEIHWVHNGKPISQ 168
+ + T+E P ++ A E + C +G +W NG I +
Sbjct: 196 I---EFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 252
Query: 169 APP----------NPRRKVGPNRITIENLRKSDTGNYG----CNATNSLG 204
P NP K IT+ N+ + ++ Y C A N+ G
Sbjct: 253 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302
>pdb|2DTG|D Chain D, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
pdb|3LOH|D Chain D, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
pdb|3W14|D Chain D, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|Q Chain Q, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 214
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG----------KPISQAPPNPRRKV 177
T P ++A+ E V+ C+AS ++W+ G S P P+R
Sbjct: 4 MTQSPSSLSASLGERVSLTCRASQDIGGNLYWLQQGPDGTIKRLIYATSSLDPGVPKRFS 63
Query: 178 GPN-----RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G +TI +L+ D +Y C +S + + + + AP ++ P +
Sbjct: 64 GSRSGSDYSLTISSLKSEDFVDYYCLQYSSSPWTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|2JJU|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp) Beta
pdb|2JJU|B Chain B, Structure Of Human Signal Regulatory Protein (Sirp) Beta
Length = 127
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 313 QPE-DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGS----EPIDFESEPRFVQSN----- 362
QPE V AG+SAT RC S + I+W RG+ E I + E F +
Sbjct: 8 QPEKSVSVAAGESATLRCAMTSLIPVG-PIMWFRGAGAGRELIYNQKEGHFPRVTTVSEL 66
Query: 363 ------DYSLTVTKSSELDSGQYTC 381
D+S++++ + D+G Y C
Sbjct: 67 TKRNNLDFSISISNITPADAGTYYC 91
>pdb|3T0E|E Chain E, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 373
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTF 145
GK+L + +E D G++TC V + + + ID+ VLA F + E E V F
Sbjct: 141 GKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLA---FQKASSIVYKKEGEQVEF 196
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTF 145
GK+L + +E D G++TC V + + + ID+ VLA F + E E V F
Sbjct: 141 GKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLA---FQKASSIVYKKEGEQVEF 196
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 32/170 (18%)
Query: 62 LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121
LP+ W KD P+ D I LI+ +V +G+YTC S K Y I
Sbjct: 135 LPKLQWYKDCKPL-LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL-GKQYPITRV 192
Query: 122 VLAAPYFTVE------PEFINAAEE-------ETVTFECKASGLPEPEIHWVHNGKPISQ 168
+ + T+E P ++ A E + C +G +W NG I +
Sbjct: 193 I---EFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 249
Query: 169 APP----------NPRRKVGPNRITIENLRKSDTGNYG----CNATNSLG 204
P NP K IT+ N+ + ++ Y C A N+ G
Sbjct: 250 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 299
>pdb|4GMS|L Chain L, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|M Chain M, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|N Chain N, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMT|L Chain L, Crystal Structure Of Heterosubtypic Fab S1391
pdb|4GMT|M Chain M, Crystal Structure Of Heterosubtypic Fab S1391
Length = 214
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 35/202 (17%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN------------PRR 175
T +F++ + + V+ CKAS + + W + KP Q+P P R
Sbjct: 4 MTQSQKFMSTSVGDRVSVTCKASQNVDTNVAW-YQEKP-GQSPKTLIYSASNRYSGVPDR 61
Query: 176 KVGPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP-- 225
G +TI N++ D Y C NS Y + + + AP ++ P
Sbjct: 62 FTGSASGTDFTLTITNVQSEDLAEYFCQQYNSYPYTFGGGTKLEIKRADAAPTVSIFPPS 121
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKI 274
++ T G +VV F V W + E G +T ++ D L +
Sbjct: 122 SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL 181
Query: 275 TDVAFADSGEYTCFARNKLGTA 296
T + YTC A +K T+
Sbjct: 182 TKDEYERHNSYTCEATHKTSTS 203
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 32/170 (18%)
Query: 62 LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121
LP+ W KD P+ D I LI+ +V +G+YTC S K Y I
Sbjct: 140 LPKLQWYKDCKPL-LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL-GKQYPITRV 197
Query: 122 VLAAPYFTVE------PEFINAAEE-------ETVTFECKASGLPEPEIHWVHNGKPISQ 168
+ + T+E P ++ A E + C +G +W NG I +
Sbjct: 198 I---EFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 254
Query: 169 APP----------NPRRKVGPNRITIENLRKSDTGNYG----CNATNSLG 204
P NP K IT+ N+ + ++ Y C A N+ G
Sbjct: 255 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 304
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------------IHNQKELTGG---RY 264
++T++P G+TV +TCR G + W ++N K L G R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRF 62
Query: 265 TILETG---DLKITDVAFADSGEYTC 287
+ E+G LKI + D G Y C
Sbjct: 63 SGSESGTQYSLKINSLQPEDFGSYYC 88
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ ETVT C+ASG + W V+N K ++ P+ R
Sbjct: 4 MTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPS--R 61
Query: 176 KVGPN-----RITIENLRKSDTGNYGC 197
G + I +L+ D G+Y C
Sbjct: 62 FSGSESGTQYSLKINSLQPEDFGSYYC 88
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPN-PRRKV 177
T P ++ ++V+ C+AS +HW K +SQ+ P R
Sbjct: 4 LTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYVSQSSSGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D G Y C +NS + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVETEDFGMYFCQQSNSWPRTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|1SY6|A Chain A, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 204
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG---GRYTILETGDLKITDV 277
IT+ P + ++ G TV+LTC + P E+ W HN K + G + + L + +
Sbjct: 117 ITQTPY-KVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF 173
Query: 278 A-FADSGEYTCFAR 290
+ SG Y C+ R
Sbjct: 174 SELEQSGYYVCYPR 187
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFIN 136
D I+ G +L I +V SD G Y C +G K+ ++L V A V+ +
Sbjct: 76 DGITAGK--AALRIHNVTASDSGKYLCYFQDGDFYEKAL-VELKVAALGSDLHVD---VK 129
Query: 137 AAEEETVTFECKASG-LPEPEIHWVHN 162
++ + EC+++G P+P+I W +N
Sbjct: 130 GYKDGGIHLECRSTGWYPQPQIQWSNN 156
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFIN 136
D I+ G +L I +V SD G Y C +G K+ ++L V A V+ +
Sbjct: 76 DGITAGK--AALRIHNVTASDSGKYLCYFQDGDFYEKAL-VELKVAALGSDLHVD---VK 129
Query: 137 AAEEETVTFECKASG-LPEPEIHWVHN 162
++ + EC+++G P+P+I W +N
Sbjct: 130 GYKDGGIHLECRSTGWYPQPQIQWSNN 156
>pdb|2ADG|A Chain A, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
pdb|2ADI|A Chain A, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425 In
Complex With Barium
pdb|2ADJ|A Chain A, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425 In
Complex With Calcium
Length = 214
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 35/201 (17%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKP----ISQAPPNPRRKVGPNRI 182
T P ++ A E VT C S + +++W G+P IS+ N R P+R
Sbjct: 5 TQSPASLSVAIGEKVTIRCITSTDIDDDMNWYQQKPGEPPKFFISEG--NTLRPGVPSRF 62
Query: 183 -----------TIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--K 226
TIEN+ D +Y C +++L + + + AP ++ P
Sbjct: 63 SSSGYGTDFVFTIENMLSEDVADYYCLQSDTLPLTFGSGTKLEIKRADAAPTVSIFPPSS 122
Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKIT 275
++ T G +VV F V W + E G +T ++ D L +T
Sbjct: 123 EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 182
Query: 276 DVAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 183 KDEYERHNSYTCEATHKTSTS 203
>pdb|1Z7Z|I Chain I, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
With Five Domain Icam-1kilifi
Length = 450
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 63 PQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA---KSYSID 119
P+ + +GVP P +Q L++K + S++C + V K+ + +
Sbjct: 309 PRAKVTLNGVPAQPLGPRAQ------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362
Query: 120 LSVLAAPYFTVE--PEFINAAEEETVTFECKASGLPEPEIHWVHNGK---PISQAPPNPR 174
L VL P P E T C+A G P PE+ + +G PI ++
Sbjct: 363 LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES----- 417
Query: 175 RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+T+ + G Y C A ++ G V ++V VNVL+
Sbjct: 418 -------VTVT---RDLEGTYLCRARSTQGEVTREVTVNVLS 449
>pdb|3Q5T|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 241
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 76 PSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI--------DLSVLA 124
PSDR S +L I+ + D +Y C S+GVG + DL +
Sbjct: 62 PSDRFSAVRPKGTNSTLKIQSAKQGDTATYLCASSSGVGTEVFFGKGTRLTVVEDLRNVT 121
Query: 125 APYFTV-EPEFINAAEEETVTFECKASGL--PEPEIHWVHNGKPI 166
P ++ EP A ++ T C A G E+ W NGK +
Sbjct: 122 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV 166
>pdb|2OZ4|A Chain A, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 265
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 63 PQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA---KSYSID 119
P+ + +GVP P +Q L++K + S++C + V K+ + +
Sbjct: 124 PRAKVTLNGVPAQPLGPRAQ------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
Query: 120 LSVLAAPYFTVE--PEFINAAEEETVTFECKASGLPEPEIHWVHNGK-PISQAPPNPRRK 176
L VL P P E T C+A G P PE+ + +G P+
Sbjct: 178 LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL---------P 228
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+G + +L G Y C A ++ G V ++V VNVL+
Sbjct: 229 IGESVTVTRDLE----GTYLCRARSTQGEVTREVTVNVLS 264
>pdb|1GGI|H Chain H, Crystal Structure Of An Hiv-1 Neutralizing Antibody 50.1
In Complex With Its V3 Loop Peptide Antigen
pdb|1GGI|J Chain J, Crystal Structure Of An Hiv-1 Neutralizing Antibody 50.1
In Complex With Its V3 Loop Peptide Antigen
Length = 222
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVE------AGQSA 325
LKIT V AD+ Y C + QG+ S+TV T P Y + G S
Sbjct: 82 LKITSVDTADTATYYCVQEGYIYWGQGT-SVTVSSAK--TTAPSVYPLAPVCGDTTGSSV 138
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
T C +++ W GS + P +QS+ Y+L
Sbjct: 139 TLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL 179
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 143 VTFECKA-SGLPEPEIHW--VHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCN 198
VTF C A S P + W +HNGK P R + N I TI N++ SD G Y C
Sbjct: 28 VTFICTAKSKSPAYTLVWTRLHNGKL-------PSRAMDFNGILTIRNVQPSDAGTYVCT 80
Query: 199 ATN 201
+N
Sbjct: 81 GSN 83
>pdb|3LQA|C Chain C, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 192
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 20/140 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLAHAPEI 221
+ V + + VLA I
Sbjct: 164 NQKKVEFKIDIVVLAFQKAI 183
>pdb|1P53|A Chain A, The Crystal Structure Of Icam-1 D3-D5 Fragment
pdb|1P53|B Chain B, The Crystal Structure Of Icam-1 D3-D5 Fragment
Length = 266
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 63 PQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA---KSYSID 119
P+ + +GVP P +Q L++K + S++C + V K+ + +
Sbjct: 125 PRAKVTLNGVPAQPLGPRAQ------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 178
Query: 120 LSVLAAPYFTVE--PEFINAAEEETVTFECKASGLPEPEIHWVHNGK-PISQAPPNPRRK 176
L VL P P E T C+A G P PE+ + +G P+
Sbjct: 179 LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL---------P 229
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+G + +L G Y C A ++ G V ++V VNVL+
Sbjct: 230 IGESVTVTRDLE----GTYLCRARSTQGEVTREVTVNVLS 265
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 213 NVLAHAPEITEAPKD-EYTVDGKTVVLTCRVFGAPKPEVNWI------HNQKELTGG--- 262
N+ H P +A K E+ +G+T +L C+ P P +W K L G
Sbjct: 77 NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP-PVTDWAWYKITDSEDKALMNGSES 135
Query: 263 RYTILET---GDLKITDVAF-ADSGEYTCFARNKLGTAQGSGSLTVKEH 307
R+ + + +L I ++ AD G+Y C + G+ Q +L V+ H
Sbjct: 136 RFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 184
>pdb|1GGB|H Chain H, Major Antigen-Induced Domain Rearrangements In An Antibody
pdb|1GGC|H Chain H, Major Antigen-Induced Domain Rearrangements In An Antibody
Length = 215
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVE------AGQSA 325
LKIT V AD+ Y C + QG+ S+TV T P Y + G S
Sbjct: 82 LKITSVDTADTATYYCVQEGYIYWGQGT-SVTVSSAK--TTAPSVYPLAPVCGDTTGSSV 138
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
T C +++ W GS + P +QS+ Y+L
Sbjct: 139 TLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL 179
>pdb|3D9A|L Chain L, High Resolution Crystal Structure Structure Of Hyhel10 Fab
Complexed To Hen Egg Lysozyme
Length = 213
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPN-PRRKV 177
T P ++ +V+ C+AS +HW K SQ+ P R
Sbjct: 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D G Y C +NS Y + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 76 PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFI 135
P D +++ SL + V D+G + C+ N G+ + + V P +PE +
Sbjct: 50 PWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG---KPEIV 106
Query: 136 NAAEEETVTFE-----CKASG-LPEPEIHWVHNGKPI 166
++A E T C + G P + W +GKP+
Sbjct: 107 DSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPL 143
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 519 AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY 578
A L W KP N L+ Y I S LL + DP TS + GL P+ Y
Sbjct: 35 AINLTWTKPFDGNSPLIRY-ILEMSENNAPWTVLLASV----DPKATSVTVKGLVPARSY 89
Query: 579 RIHLAGYTKAGDGAESK 595
+ L G G SK
Sbjct: 90 QFRLCAVNDVGKGQFSK 106
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 76 PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFI 135
P D +++ SL + V D+G + C+ N G+ + + V P +PE +
Sbjct: 421 PWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG---KPEIV 477
Query: 136 NAAEEETVTF-----ECKASG-LPEPEIHWVHNGKPI 166
++A E T C + G P + W +GKP+
Sbjct: 478 DSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPL 514
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 76 PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFI 135
P D +++ SL + V D+G + C+ N G+ + + V P +PE +
Sbjct: 53 PWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG---KPEIV 109
Query: 136 NAAEEETVTFE-----CKASG-LPEPEIHWVHNGKPI 166
++A E T C + G P + W +GKP+
Sbjct: 110 DSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPL 146
>pdb|3L5W|L Chain L, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5W|A Chain A, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L7E|L Chain L, Crystal Structure Of Anti-Il-13 Antibody C836
pdb|3L7E|A Chain A, Crystal Structure Of Anti-Il-13 Antibody C836
Length = 214
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 20/144 (13%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRRK 176
T P ++ A+ ET+T C+AS + W +++G + P+
Sbjct: 5 TQSPSYLAASPGETITLNCRASKSISKYLAWYQEKPGKTNKLLIYSGSTLQSGIPSRFSG 64
Query: 177 VGPN---RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAPKDEYT 230
G +TI +L D Y C N Y + + + AP + P +
Sbjct: 65 SGSGTDFTLTISSLEPEDFAMYFCQQHNEYPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQ 124
Query: 231 VDGKTVVLTCRV--FGAPKPEVNW 252
+ T + C + F + +V W
Sbjct: 125 LKSGTASVVCLLNNFYPREAKVQW 148
>pdb|4FS0|A Chain A, Crystal Structure Of Mutant F136d Of Mouse Nectin-2
Extracellular Fragment D1-D2
Length = 225
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 59 GTPLPQTIWSKDGVP-INPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS 117
G P + +SKD + + + +L + + D+G+YTCE + +
Sbjct: 54 GVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATDPNGTRRGV 113
Query: 118 IDLSVLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHN 162
L V+A P E + + + C ++ G P I W+ +
Sbjct: 114 TWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISS 159
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 85 YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
Y L +++VEF+ +G Y C +SN G + S L++
Sbjct: 74 YTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>pdb|1IGC|L Chain L, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 213
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 34/201 (16%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP-----NPRRKVG-PNR 181
T P+ ++ + E VT CKAS + W + KP Q+P R G P+R
Sbjct: 4 MTQSPKSMSMSVGERVTLTCKASENVVTYVSW-YQQKP-EQSPKLLIYGASNRYTGVPDR 61
Query: 182 -----------ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP-- 225
+TI +++ D +Y C NS Y + + + AP ++ P
Sbjct: 62 FTGSGSATDFTLTISSVQAEDLADYHCGQGNSYPYTFGGGTKLEIKRADAAPTVSIFPPS 121
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG--GRYTILETGD--------LKIT 275
++ T G +VV F V W + + G +T ++ D L +T
Sbjct: 122 SEQLTSGGASVVCFLNNFYPKDINVKWKIDSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 181
Query: 276 DVAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 182 KDEYERHNSYTCEATHKTSTS 202
>pdb|2CH8|A Chain A, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|B Chain B, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|C Chain C, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|D Chain D, Structure Of The Epstein-barr Virus Oncogene Barf1
Length = 201
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
L++ S G+Y C + G E LSV+ +V E + +T C
Sbjct: 69 LVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKPLTLSVHSERSQFPDFSVLTVTCT 127
Query: 149 ASGLPEPEIHWV 160
+ P P + W+
Sbjct: 128 VNAFPHPHVQWL 139
>pdb|1YNT|A Chain A, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
pdb|1YNT|C Chain C, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
Length = 213
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KDEYTVDGKTV 236
+TI NL + D Y C N+L Y + + + AP ++ P ++ T G +V
Sbjct: 73 LTISNLEQEDIATYFCQQGNTLPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 132
Query: 237 VLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITDVAFADSGEY 285
V F V W + E G +T ++ D L +T + Y
Sbjct: 133 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY 192
Query: 286 TCFARNKLGTA 296
TC A +K T+
Sbjct: 193 TCEATHKTSTS 203
>pdb|3HFM|L Chain L, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 214
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPN-PRRKV 177
T P ++ +V+ C+AS +HW K SQ+ P R
Sbjct: 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D G Y C +NS Y + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|3UEZ|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|M Chain M, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|N Chain N, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|O Chain O, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|P Chain P, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|Q Chain Q, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|R Chain R, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|A Chain A, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|B Chain B, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|C Chain C, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|D Chain D, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 208
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
L++ S G+Y C + G E LSV+ +V E + +T C
Sbjct: 69 LVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKPLTLSVHSERSQFPDFSVLTVTCT 127
Query: 149 ASGLPEPEIHWV 160
+ P P + W+
Sbjct: 128 VNAFPHPHVQWL 139
>pdb|4FA8|A Chain A, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|B Chain B, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|D Chain D, Multi-Pronged Modulation Of Cytokine Signaling
Length = 203
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
L++ S G+Y C + G E LSV+ +V E + +T C
Sbjct: 71 LVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKPLTLSVHSERSQFPDFSVLTVTCT 129
Query: 149 ASGLPEPEIHWV 160
+ P P + W+
Sbjct: 130 VNAFPHPHVQWL 141
>pdb|2B4C|C Chain C, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
pdb|2QAD|B Chain B, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|F Chain F, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 181
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|3DUH|A Chain A, Structure Of Interleukin-23
pdb|3DUH|B Chain B, Structure Of Interleukin-23
Length = 314
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 21/135 (15%)
Query: 220 EITEAPKDEYTVD--------GKTVVLTCRVFGAPKPE-VNWIHNQK-ELTGGRYTILET 269
EI E KD Y V+ G+ VVLTC P+ + + W +Q E+ G T
Sbjct: 2 EIWELKKDVYVVELDWYPDAPGEMVVLTC---DTPEEDGITWTLDQSSEVLGSGKT---- 54
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
L I F D+G+YTC ++ + ++ TD +D + E RC
Sbjct: 55 --LTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKD-QKEPKNKTFLRC 111
Query: 330 NAVSDPSLKLSIVWL 344
A + S + + WL
Sbjct: 112 EA-KNYSGRFTCWWL 125
>pdb|3O2D|A Chain A, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 188
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|3CD4|A Chain A, Refinement And Analysis Of The First Two Domains Of Human
Cd4
Length = 182
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|2NXY|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed With
Cd4 And Antibody 17b
pdb|2NY6|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
pdb|3JWD|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|D Chain D, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWO|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 184
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 65 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 115
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 116 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 164
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 165 NQKKVEFKIDIVVLA 179
>pdb|2KH2|B Chain B, Solution Structure Of A Scfv-Il-1b Complex
Length = 254
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ + VT C+ SG + W ++N K ++ P+
Sbjct: 4 MTQSPSSLSASVGDRVTITCRTSGNIHNYLTWYQQKPGKAPQLLIYNAKTLADGVPSRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCNATNSLGYVY 207
G +TI +L+ D NY C SL + +
Sbjct: 64 GSGSGTQFTLTISSLQPEDFANYYCQHFWSLPFTF 98
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 88 SLIIKHVEFSDQGSYTCEVSN 108
S++I ++++SD G++TC+V N
Sbjct: 468 SIVIHNLDYSDNGTFTCDVKN 488
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
QG G +T+ + ++ E + Q AT+ A + LK+S+VW P +
Sbjct: 305 QGWGRVTLDKSLNVAYVNESSSLSTSQKATYSFTATAGKPLKISLVW--SDAPASTTASV 362
Query: 357 RFVQSNDYSLTVTKSSELDSGQYTC--------RAQTELDFIEAQATLTVQVPLEA---- 404
V D +T ++ +T R E FI A + T + ++A
Sbjct: 363 TLVNDLDLVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFINAPQSGTYTIEVQAYNVP 422
Query: 405 --PSNFTLIQV 413
P F+L V
Sbjct: 423 VGPQTFSLAIV 433
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
QG G +T+ + ++ E + Q AT+ A + LK+S+VW P +
Sbjct: 305 QGWGRVTLDKSLNVAYVNESSSLSTSQKATYSFTATAGKPLKISLVW--SDAPASTTASV 362
Query: 357 RFVQSNDYSLTVTKSSELDSGQYTC--------RAQTELDFIEAQATLTVQVPLEA---- 404
V D +T ++ +T R E FI A + T + ++A
Sbjct: 363 TLVNDLDLVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFINAPQSGTYTIEVQAYNVP 422
Query: 405 --PSNFTLIQV 413
P F+L V
Sbjct: 423 VGPQTFSLAIV 433
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 242 VFGAPKPEVNWIHNQKELTGGRYTILET---------GDLKITDVAFADSGEYTCFARNK 292
V G PKP + W +N L +Y + G L++ + ++G+YT A+N+
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE 84
Query: 293 LG 294
G
Sbjct: 85 YG 86
>pdb|1CDI|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
Length = 179
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 65 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 115
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 116 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 164
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 165 NQKKVEFKIDIVVLA 179
>pdb|1CDY|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Gly 47 Replaced By Ser
Length = 178
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
pdb|1CDH|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
pdb|1CDJ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4
Length = 178
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|1K6Q|L Chain L, Crystal Structure Of Antibody Fab Fragment D3
Length = 210
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 73/201 (36%), Gaps = 33/201 (16%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP-----------ISQAPPNPRRK 176
T P ++A+ E+VT CKAS + + W + KP S A P R
Sbjct: 4 MTQSPSSMSASLGESVTITCKASRDIKSYLSW-YQQKPWKSPKTLIYYATSLADGVPSRF 62
Query: 177 VGPN-----RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--K 226
G +TI +L DT Y C + + + + AP ++ P
Sbjct: 63 SGSGSGQDYSLTISSLESDDTATYYCLQHGESPFTFGSGTKLELKRADAAPTVSIFPPSS 122
Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKIT 275
++ T G +VV F V W + E G +T ++ D L +T
Sbjct: 123 EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 182
Query: 276 DVAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 183 KDEYERHNSYTCEATHKTSTS 203
>pdb|3CX2|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Isoform Of
Myosin Binding Protein-C At 1.3a
pdb|2V6H|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Myosin
Binding Protein-C
Length = 108
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIV-WLRGSEPIDFESEP-RFVQSND------- 363
+P+D EV G S TF LK +V W +G + +D S+ + +Q +D
Sbjct: 10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKG-KWVDLSSKVGQHLQLHDSYDRASK 68
Query: 364 ---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ L +T + +G Y C T+ F + LTV
Sbjct: 69 VYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>pdb|3RIQ|A Chain A, Siphovirus 9na Tailspike Receptor Binding Domain
Length = 543
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 112 EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP 171
EA + ++D ++ Y ++ E ++ + +T ECKA + + ++W + G P
Sbjct: 25 EAATAAVDSLLIDIDYNFIDGEAVDFGGK-VLTIECKAKFIGDGVLNWNNLGSGSKVISP 83
Query: 172 NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV 206
+ K P + R D GN+ N T L V
Sbjct: 84 HMHTKTTPYTV----YRFDDNGNWVTNPTTVLASV 114
>pdb|1CDU|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Phe 43 Replaced By Val
Length = 178
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPN-PRRKV 177
T P ++ E+V+ C+AS +HW K SQ+ P R
Sbjct: 4 LTQSPATLSVTPGESVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D G Y C +NS + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVETEDFGMYYCQQSNSWPLTFGAGTKLELKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZJ|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
QGN+ LIIK+++ D +Y CEV + E + L+ + + +
Sbjct: 64 QGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL-------QGQSL 114
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T+T E P + P + G +++ L D+G + C
Sbjct: 115 TLTLESPPGSSPSVQCR-----------SPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 202 SLGYVYKDVYVNVLA 216
+ V + + VLA
Sbjct: 164 NQKKVEFKIDIVVLA 178
>pdb|4FMK|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2
pdb|4FN0|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|B Chain B, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|C Chain C, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
Length = 225
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 59 GTPLPQTIWSKDGVP-INPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS---NGVGEAK 114
G P + +SKD + + + +L + + D+G+YTCE + NG
Sbjct: 54 GVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATFPNGTRRGV 113
Query: 115 SYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHN 162
++ L V+A P E + + + C ++ G P I W+ +
Sbjct: 114 TW---LRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISS 159
>pdb|1B4T|A Chain A, H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE
(298k) Structure
Length = 153
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK 603
S+PTT S ++AG P+ + H+ + A +G S + PFK
Sbjct: 25 SEPTTVSYEIAGNSPNAERGFHICEFGDATNGCVSAGPHFNPFK 68
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 242 VFGAPKPEVNWIHNQKELTGGRYTILET---------GDLKITDVAFADSGEYTCFARNK 292
V G PKP + W +N L +Y + G L++ + ++G+YT A+N+
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE 84
Query: 293 LG 294
G
Sbjct: 85 YG 86
>pdb|2V17|L Chain L, Structure Of The Complex Of Antibody Mn423 With A Fragment
Of Tau Protein
pdb|3L1O|L Chain L, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 214
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 31/199 (15%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRRK 176
T P ++ A+ ET+T C+AS + W +++G + P+
Sbjct: 5 TQSPSYLAASPGETITINCRASKSIRKFLAWYREKPGKTNKLLIYSGSTLQSGTPSRFSG 64
Query: 177 VGPN---RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KDE 228
G +TI L D Y C N + + + AP ++ P ++
Sbjct: 65 SGSGTDFTLTISRLEPEDFAMYYCQQHNDYPLTFGAGTKLELKRADAAPTVSIFPPSSEQ 124
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITDV 277
T G +VV F V W + E G +T ++ D L +T
Sbjct: 125 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKD 184
Query: 278 AFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 185 EYERHNSYTCEATHKTSTS 203
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
+PG +L A ++ + W P NG + YK+ Y KGT + D
Sbjct: 17 LPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYME-KGTDKEQDV-------DV 68
Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
++ S + GL+ T+Y + Y K G G +
Sbjct: 69 SSHSYTINGLKKYTEYSFRVVAYNKHGPGVST 100
>pdb|1MEX|L Chain L, Antibody Catalysis Of A Bimolecular Cycloaddition Reaction
Length = 213
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 72/202 (35%), Gaps = 35/202 (17%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN------------PRR 175
T +F++ + V+ CKAS + W KP Q+P P R
Sbjct: 4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQ-KP-GQSPKTLIYSASYRYSGVPDR 61
Query: 176 KVGPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP-- 225
G +TI N++ D Y C NS Y + + + AP ++ P
Sbjct: 62 FTGSGSGTDFTLTINNVQSEDLAEYFCQQYNSYPYTFGGGTKLEIKRADAAPTVSIFPPS 121
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKI 274
++ T G +VV F V W + E G +T ++ D L +
Sbjct: 122 SEQLTGGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL 181
Query: 275 TDVAFADSGEYTCFARNKLGTA 296
T + YTC A +K T+
Sbjct: 182 TKDEYERHNSYTCEATHKTSTS 203
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 88/238 (36%), Gaps = 43/238 (18%)
Query: 96 FSDQGSYTC-EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP- 153
F + G+Y C E + +G + + + + A P+ N +E V FE + + LP
Sbjct: 60 FQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPW--------NVLAQEVVVFEDQDALLPC 111
Query: 154 -------EPEIHWVH-NGKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGCNAT---- 200
E + V G+P+ + + P + TI + + +Y C+A
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMR---HTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGR 168
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW-------- 252
+ + V+ P +T P + + G+ + C A +VN+
Sbjct: 169 KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVC---SASSVDVNFDVFLQHNN 225
Query: 253 ----IHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
I Q + RY + T L + V F +G Y+C A N G S V E
Sbjct: 226 TKLAIPQQSDFHNNRYQKVLT--LNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281
>pdb|1OPG|L Chain L, Opg2 Fab Fragment
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
Length = 214
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPN-PRRKV 177
T P ++ ++V+ C+AS +HW K SQ+ P R
Sbjct: 4 LTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D G Y C +NS + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSINSVETEDFGMYFCQQSNSWPLTFGGGSKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|1D5B|A Chain A, Unliganded Mature Oxy-Cope Catalytic Antibody
pdb|1D5B|L Chain L, Unliganded Mature Oxy-Cope Catalytic Antibody
Length = 211
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------------IHNQKELTGG---RY 264
++T++P Y G+ V +TC+ +NW I+ L G R+
Sbjct: 3 KMTQSPSSMYASLGERVTITCKASQDINSYLNWFQQKPGKSPKTLIYRTNRLVDGVPSRF 62
Query: 265 TILETG---DLKITDVAFADSGEYTCFARNKLGTAQGSGS 301
+ +G L I+ + + D G Y C ++ GSG+
Sbjct: 63 SGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGT 102
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
G + L CR+ + +NW+ + +L T + ++++ D ADSG Y C
Sbjct: 18 GDLLQLRCRLRDDVQ-SINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACV---- 72
Query: 293 LGTAQGSGSLTVKEHTHITD 312
T+ SGS T +++D
Sbjct: 73 --TSSPSGSDTTYFSVNVSD 90
>pdb|3IY2|A Chain A, Variable Domains Of The Computer Generated Model (Wam) Of
Fab 6 Fitted Into The Cryoem Reconstruction Of The
Virus- Fab 6 Complex
Length = 107
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRRKVGP 179
P ++A+ ETVT C+A+ + W VHN K +++ P+ G
Sbjct: 6 PASLSASVGETVTITCRATKNIYSYLAWYQQKQGKSPQVLVHNAKTLTEGVPSRFSGSGS 65
Query: 180 N---RITIENLRKSDTGNYGCN 198
+ I +L+ D G+Y C
Sbjct: 66 GTQFSLKINSLQPEDFGSYYCQ 87
>pdb|1AXS|L Chain L, Mature Oxy-Cope Catalytic Antibody With Hapten
pdb|1AXS|A Chain A, Mature Oxy-Cope Catalytic Antibody With Hapten
Length = 211
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------------IHNQKELTGG---RYT 265
+T++P Y G+ V +TC+ +NW I+ L G R++
Sbjct: 4 LTQSPSSMYASLGERVTITCKASQDINSYLNWFQQKPGKSPKTLIYRTNRLVDGVPSRFS 63
Query: 266 ILETG---DLKITDVAFADSGEYTCFARNKLGTAQGSGS 301
+G L I+ + + D G Y C ++ GSG+
Sbjct: 64 GSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGT 102
>pdb|3UJJ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 4025 In Complex
With Con A Peptide
Length = 213
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 25/139 (17%)
Query: 127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP-----PNPRRKVG-PN 180
Y +P ++ + +T C LPE +W QAP + +R G P
Sbjct: 2 YELTQPPSVSVSPGQTARITCSGDALPEKYAYWYQQKS--GQAPVLIIYEDSKRPSGIPE 59
Query: 181 R-----------ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHA---PEITE 223
R +TI + D +Y C +TNS G + V VL P +T
Sbjct: 60 RFSGSRSGTMATLTISGAQVDDEADYYCYSTNSGGTFFVFGTGTKVTVLGQPKANPTVTL 119
Query: 224 APKDEYTVDGKTVVLTCRV 242
P + L C +
Sbjct: 120 FPPSSEELQANKATLVCLI 138
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 312 DQPEDYEV--EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN-DYSLTV 368
+QP EV EAG SAT C + + W + + + S+ R L V
Sbjct: 14 EQPAHREVQAEAGASATLSCEVAQ---AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 369 TKSSELDSGQYTCRA 383
++ + ++G+Y+C A
Sbjct: 71 QQAGQAEAGEYSCEA 85
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 126
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 26/98 (26%)
Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
VP SL PL +S + W PE N V+ GY I Y I P
Sbjct: 27 VPEVPSSLHVRPLVTS-IVVSWTPPENQNIVVRGYAIGYG----------------IGSP 69
Query: 563 TTTSAK---------LAGLEPSTKYRIHLAGYTKAGDG 591
+ K + L+PS+ Y I L + G+G
Sbjct: 70 HAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEG 107
>pdb|3LIZ|L Chain L, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 211
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 71/200 (35%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPISQAPPNPRRKVG--PNRI- 182
T P + A+ E VT CKAS + W GK R V P+R+
Sbjct: 4 LTQSPSSMYASLGERVTITCKASQDINNYLSWFQQKPGKSPKTLIYRADRLVDGVPSRVS 63
Query: 183 ----------TIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
TI +L D G Y C + L Y + + + AP ++ P +
Sbjct: 64 GSGSGQDYSLTISSLEYEDLGIYYCLQYDELPYTFGGGTKLEIKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 16/172 (9%)
Query: 226 KDEYTVDGKTVVLTC-----RVFGAPKPEVN--WIHNQKELT--GGRYTIL--ETGDLKI 274
K E+ ++G+ V L C ++ + P +N W N T G T + + G L +
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWL 85
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYE--VEAGQSATFRCNAV 332
DSG Y C RN + S L V E+T Y + S C +
Sbjct: 86 LPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDL 145
Query: 333 SD---PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC 381
S+ + I W + S +D ++E L V + D+G Y C
Sbjct: 146 SEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRC 197
>pdb|1IAI|M Chain M, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|L Chain L, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|A Chain A, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 215
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 38/204 (18%)
Query: 128 FTVEPEFINAAEEETVTFEC----------------KASGLPEPEIHWVHNGKPISQAPP 171
T P F+ A+ E VT C K+ P+P W++ ++ P
Sbjct: 4 LTQSPAFMAASPGEKVTITCSVSSSISSSNLHWYQQKSETSPKP---WIYGTSNLASGVP 60
Query: 172 ---NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP 225
+ +TI ++ D Y C NS Y + + + AP ++ P
Sbjct: 61 VRFSGSGSGTSYSLTISSMEAEDAATYYCQQWNSYPYTFGGGTKLEIKRADAAPTVSIFP 120
Query: 226 --KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------L 272
++ T G +VV F V W + E G +T ++ D L
Sbjct: 121 PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTL 180
Query: 273 KITDVAFADSGEYTCFARNKLGTA 296
+T + YTC A +K T+
Sbjct: 181 TLTKDEYERHNSYTCEATHKTSTS 204
>pdb|3SE9|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|4I3R|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P3221
pdb|4I3S|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P21
Length = 208
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVS-------------DPSLKLSIVWLRGSEPIDFESEP 356
+T P + G++A+ C A S P L + R S D S
Sbjct: 4 LTQSPGTLSLSPGETASLSCTAASYGHMTWYQKKPGQPPKLLIFATSKRASGIPDRFSGS 63
Query: 357 RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNF 408
+F Y+LT+T+ D +Y C+ +L+F L ++ + APS F
Sbjct: 64 QF--GKQYTLTITRMEPEDFARYYCQ---QLEFFGQGTRLEIRRTVAAPSVF 110
>pdb|1N26|A Chain A, Crystal Structure Of The Extra-Cellular Domains Of Human
Interleukin-6 Receptor Alpha Chain
Length = 325
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 141 ETVTFECKASGLPEPE----IHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYG 196
++VT C EPE +HWV KP + + P+ +G R+ + +++ D+GNY
Sbjct: 22 DSVTLTCPGV---EPEDNATVHWVLR-KPAAGSHPSRWAGMG-RRLLLRSVQLHDSGNYS 76
Query: 197 C-NATNSLGYVYKDVYVNVLAHAPEIT 222
C A G V+ + V+V P+++
Sbjct: 77 CYRAGRPAGTVH--LLVDVPPEEPQLS 101
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 33/122 (27%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLS------IVWLR---GSEP--------IDF 352
+T P V AG+ T C S SL S + W + G P F
Sbjct: 4 MTQSPSSLAVSAGEKVTMSCR--SSQSLYYSGIKKNLLAWYQLKPGQSPKLLIYYASTLF 61
Query: 353 ESEP-RFVQS---NDYSLTVTKSSELDSGQYTCR----------AQTELDFIEAQATLTV 398
P RF S DY+LT+T D GQY C+ A T+L+ A A TV
Sbjct: 62 TGVPDRFTGSGSGTDYTLTITSVQAEDMGQYFCQQGISNPYTFGAGTKLEIKRADAKPTV 121
Query: 399 QV 400
+
Sbjct: 122 SI 123
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 215 LAHAPEIT--------EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTI 266
LAH P + + P V G V+L C+V G + WI + E + T+
Sbjct: 148 LAHMPNASCGVPTLKVQVPNASVDV-GDDVLLRCQVEGRGLEQAGWILTELEQSA---TV 203
Query: 267 LETGDLKITDVAFA------DSGEYTCFARNKLGTAQGSGSLTV 304
+++G L + A + TC+A N +G A+ S + V
Sbjct: 204 MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKV---QTWTEKDGEGSIRELI 456
P P + TL Q + ++ V+W + G RGY++ + +G+ SI E+
Sbjct: 14 APDGPPMDVTL-QPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
G+S +D ++ V AFN A GP S I+ T E P
Sbjct: 73 AT-GDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGP 119
>pdb|2XKN|A Chain A, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
pdb|2XKN|C Chain C, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
Length = 223
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KDEYTVDGKTV 236
+TI NL + D Y C N+L + + V + AP ++ P ++ T G +V
Sbjct: 73 LTISNLEQEDIATYFCQQGNTLPWTFGGGTKVEIKRADAAPTVSIFPPSSEQLTSGGASV 132
Query: 237 VLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITDVAFADSGEY 285
V F V W + E G +T ++ D L +T + Y
Sbjct: 133 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY 192
Query: 286 TCFARNKLGTA 296
TC A +K T+
Sbjct: 193 TCEATHKTSTS 203
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ ETVT C+AS + W V+N K +++ P+
Sbjct: 4 MTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLAEGVPSRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G + I +L+ D G+Y C + + + AP ++ P +
Sbjct: 64 GSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPLTFGAGTKLELKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 67 WSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSY 102
W+K+G+P+ SDR+ G+ L+I + D+G Y
Sbjct: 39 WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDY 76
>pdb|2EDB|A Chain A, Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 116
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVG-PLLERLPYISD 561
VP SL P ++ + W P PN V+ GY I Y VG P E + D
Sbjct: 17 VPDQPSSLHVRPQ-TNCIIMSWTPPLNPNIVVRGYIIGY------GVGSPYAETVRV--D 67
Query: 562 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
+ LE S+ Y I L + AG+G
Sbjct: 68 SKQRYYSIERLESSSHYVISLKAFNNAGEG 97
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV-KEHTHITD-QPEDYEVEAGQSATFRC 329
L I D DSG Y C A G G T+ K + HI + P Y++ +S
Sbjct: 74 LHIRDAQLEDSGTYFCAAEPSSGQKLVFGQGTILKVYLHIQNPDPAVYQLRDSKS----- 128
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
SD S+ L DF+S+ QS D + +T LD
Sbjct: 129 ---SDKSVCLF---------TDFDSQTNVSQSKDSDVYITDKCVLD 162
>pdb|1F1A|A Chain A, Crystal Structure Of Yeast H48q Cuznsod Fals Mutant Analog
Length = 154
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK 603
S+PTT S ++AG P+ + H+ + A +G S + PFK
Sbjct: 26 SEPTTVSYEIAGNSPNAERGFHIQEFGDATNGCVSAGPHFNPFK 69
>pdb|1CIC|A Chain A, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 35/202 (17%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP------PNPRRKVGPNR 181
T +F++ + + V+ CKAS + W + KP Q+P + R P+R
Sbjct: 4 MTQSHKFMSTSVGDRVSITCKASQDVRIAVAW-YQQKP-GQSPKLLIYWASTRHTGVPDR 61
Query: 182 -----------ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP-- 225
+TI N++ D +Y C S + + + + AP ++ P
Sbjct: 62 FTGSGSGTDFTLTISNVQSEDLADYFCQHCGSYPFTFGSGTKLEIKRADAAPTVSIFPPS 121
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKI 274
++ T G +VV F V W + E G +T ++ D L +
Sbjct: 122 SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLDSWTDQDSKDSTYSMSSTLTL 181
Query: 275 TDVAFADSGEYTCFARNKLGTA 296
T + YTC A +K T+
Sbjct: 182 TKDEYERHNSYTCEATHKTSTS 203
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH 581
L+W P++ G L+GY+++Y + + P + + D + + GL T Y
Sbjct: 25 LQWHPPKELPGELLGYRLQY--CRADEARP--NTIDFGKDDQHFT--VTGLHKGTTYIFR 78
Query: 582 LAGYTKAGDGAESKYLFYVPFKNPDNVEGRGS 613
LA +AG G E F + P+++ G S
Sbjct: 79 LAAKNRAGLGEE----FEKEIRTPEDLSGPSS 106
>pdb|1NEU|A Chain A, Structure Of Myelin Membrane Adhesion Molecule P0
Length = 124
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 88 SLIIKHVEFSDQGSYTCEVSN 108
S++I ++++SD G++TC+V N
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKN 102
>pdb|1F18|A Chain A, Crystal Structure Of Yeast Copper-Zinc Superoxide
Dismutase Mutant Gly85arg
Length = 154
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK 603
S+PTT S ++AG P+ + H+ + A +G S + PFK
Sbjct: 26 SEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFK 69
>pdb|1SDY|A Chain A, Structure Solution And Molecular Dynamics Refinement Of
The Yeast Cu,Zn Enzyme Superoxide Dismutase
pdb|1SDY|B Chain B, Structure Solution And Molecular Dynamics Refinement Of
The Yeast Cu,Zn Enzyme Superoxide Dismutase
pdb|1SDY|C Chain C, Structure Solution And Molecular Dynamics Refinement Of
The Yeast Cu,Zn Enzyme Superoxide Dismutase
pdb|1SDY|D Chain D, Structure Solution And Molecular Dynamics Refinement Of
The Yeast Cu,Zn Enzyme Superoxide Dismutase
pdb|1B4L|A Chain A, 15 Atmosphere Oxygen Yeast CuZN SUPEROXIDE DISMUTASE ROOM
Temperature (298k) Structure
pdb|1YAZ|A Chain A, Azide-Bound Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM
Temperature (298k) Structure
pdb|1JCV|A Chain A, Reduced Bridge-Broken Yeast CuZN SUPEROXIDE DISMUTASE LOW
TEMPERATURE (-180c) Structure
pdb|1YSO|A Chain A, Yeast Cu, Zn Superoxide Dismutase With The Reduced Bridge
Broken
pdb|2JCW|A Chain A, Reduced Bridge-Broken Yeast CuZN SUPEROXIDE DISMUTASE ROOM
Temperature (298k) Structure
Length = 153
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK 603
S+PTT S ++AG P+ + H+ + A +G S + PFK
Sbjct: 25 SEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFK 68
>pdb|1F1G|A Chain A, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|B Chain B, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|C Chain C, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|D Chain D, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|E Chain E, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|F Chain F, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
Length = 154
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK 603
S+PTT S ++AG P+ + H+ + A +G S + PFK
Sbjct: 26 SEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFK 69
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 31/200 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPN-PRRKV 177
T P ++ ++V+F C+AS +HW K SQ+ P R
Sbjct: 4 LTQSPATLSVTPGDSVSFSCRASQSISNNLHWYQQRTHESPRLLIKYASQSISGIPSRFS 63
Query: 178 GPNR-----ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KD 227
G ++I ++ D G Y C +N + + + AP ++ P +
Sbjct: 64 GSGSGTDFTLSISSVETEDFGMYFCQQSNRWPLTFGAGTKLELKRADAAPTVSIFPPSSE 123
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITD 276
+ T G +VV F V W + E G +T ++ D L +T
Sbjct: 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 183
Query: 277 VAFADSGEYTCFARNKLGTA 296
+ YTC A +K T+
Sbjct: 184 DEYERHNSYTCEATHKTSTS 203
>pdb|1F6L|L Chain L, Variable Light Chain Dimer Of Anti-Ferritin Antibody
Length = 114
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRR 175
T P ++A+ ETVT C+AS + W V+N K +++ P+
Sbjct: 4 MTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLAEGVPSRFS 63
Query: 176 KVGPN---RITIENLRKSDTGNYGCN 198
G + I +L+ D G+Y C
Sbjct: 64 GSGSGTQFSLKINSLQPEDFGSYYCQ 89
>pdb|2J12|B Chain B, Ad37 Fibre Head In Complex With Car D1
pdb|2J1K|A Chain A, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|B Chain B, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|G Chain G, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|J Chain J, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|K Chain K, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|O Chain O, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|P Chain P, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|T Chain T, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|V Chain V, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|X Chain X, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Y Chain Y, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Z Chain Z, Cav-2 Fibre Head In Complex With Car D1
Length = 128
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 176 KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
K G I + NL+ SD G Y C + G K +++ VL
Sbjct: 87 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 127
>pdb|2ENY|A Chain A, Solution Structure Of The Ig-Like Domain (2735-2825) Of
Human Obscurin
Length = 104
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 307 HTHITDQPEDYEVEAGQSATFRC----NAVSDPSLKLSIVWLRGSEPIDFESEPRFV--- 359
H IT + + EV G+S +F C + SDP++ W G + + S RF
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAM-----WTVGGKTVG--SSSRFQATR 60
Query: 360 QSNDYSLTVTKSSELDSGQ 378
Q Y L V +++ D+G+
Sbjct: 61 QGRKYILVVREAAPSDAGE 79
>pdb|1MAM|L Chain L, Crystal Structure To 2.45 A Resolution Of A Monoclonal Fab
Specific For The Brucella A Cell Wall Polysaccharide
Antigen
Length = 214
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVY---KDVYVNVLAHAPEITEAP--KDEYTVDGKTV 236
+TI NL + D Y C N+L + + + + AP ++ P ++ T G +V
Sbjct: 73 LTISNLNQEDMATYICQQGNTLPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 132
Query: 237 VLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--------LKITDVAFADSGEY 285
V F V W + E G +T ++ D L +T + Y
Sbjct: 133 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY 192
Query: 286 TCFARNKLGTA 296
TC A +K T+
Sbjct: 193 TCEATHKTSTS 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,002,688
Number of Sequences: 62578
Number of extensions: 1164414
Number of successful extensions: 4287
Number of sequences better than 100.0: 399
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 2872
Number of HSP's gapped (non-prelim): 979
length of query: 745
length of database: 14,973,337
effective HSP length: 106
effective length of query: 639
effective length of database: 8,340,069
effective search space: 5329304091
effective search space used: 5329304091
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)