Query psy11701
Match_columns 745
No_of_seqs 365 out of 3814
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 16:43:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.5E-86 3.3E-91 694.9 69.6 681 4-743 215-918 (1051)
2 KOG4221|consensus 100.0 2.5E-71 5.4E-76 575.4 55.0 684 27-737 35-811 (1381)
3 KOG4221|consensus 100.0 1.4E-70 3.1E-75 569.8 58.0 688 33-743 140-922 (1381)
4 KOG3513|consensus 100.0 1.2E-69 2.7E-74 568.0 65.1 648 33-742 40-818 (1051)
5 KOG4222|consensus 100.0 1.1E-54 2.3E-59 449.2 38.9 656 27-736 26-841 (1281)
6 KOG4222|consensus 100.0 1.9E-44 4E-49 373.7 33.6 555 33-600 131-842 (1281)
7 KOG4194|consensus 100.0 2.7E-30 5.9E-35 251.3 24.2 277 32-309 502-800 (873)
8 PHA02785 IL-beta-binding prote 100.0 9.7E-27 2.1E-31 229.7 29.4 245 42-296 35-318 (326)
9 KOG4194|consensus 100.0 2.1E-27 4.6E-32 231.4 21.9 272 125-399 503-796 (873)
10 PHA02785 IL-beta-binding prote 99.9 4.3E-25 9.3E-30 218.1 29.3 249 136-390 37-318 (326)
11 PHA02826 IL-1 receptor-like pr 99.8 1.5E-19 3.2E-24 166.5 19.5 153 41-203 30-211 (227)
12 KOG3515|consensus 99.8 4E-18 8.6E-23 176.6 23.9 299 44-349 18-341 (741)
13 PHA02826 IL-1 receptor-like pr 99.8 6.6E-18 1.4E-22 155.6 19.4 154 133-293 30-211 (227)
14 KOG0196|consensus 99.7 3.6E-16 7.8E-21 159.0 19.4 201 394-603 324-536 (996)
15 KOG0196|consensus 99.7 4.8E-16 1.1E-20 158.1 18.9 193 502-740 330-536 (996)
16 cd05762 Ig8_MLCK Eighth immuno 99.6 3.2E-15 7E-20 118.9 12.6 92 35-127 2-95 (98)
17 cd05851 Ig3_Contactin-1 Third 99.6 3.7E-15 8E-20 116.2 11.5 87 33-122 1-87 (88)
18 cd05851 Ig3_Contactin-1 Third 99.6 1E-14 2.2E-19 113.7 11.7 88 125-215 1-88 (88)
19 cd05762 Ig8_MLCK Eighth immuno 99.6 2.7E-14 5.8E-19 113.6 11.7 91 126-217 1-93 (98)
20 cd05740 Ig_CEACAM_D4 Fourth im 99.6 3E-14 6.5E-19 111.3 11.3 84 37-122 7-90 (91)
21 KOG3515|consensus 99.6 1.4E-13 3.1E-18 143.1 18.1 412 27-445 294-731 (741)
22 cd05866 Ig1_NCAM-2 First immun 99.5 8E-14 1.7E-18 108.5 11.9 86 36-122 3-91 (92)
23 cd05747 Ig5_Titin_like M5, fif 99.5 9.2E-14 2E-18 109.9 12.0 87 33-120 3-91 (92)
24 cd04975 Ig4_SCFR_like Fourth i 99.5 6.6E-14 1.4E-18 111.2 11.1 82 41-123 11-100 (101)
25 cd04968 Ig3_Contactin_like Thi 99.5 1.1E-13 2.4E-18 108.6 12.1 87 33-122 1-87 (88)
26 cd05737 Ig_Myomesin_like_C C-t 99.5 9.2E-14 2E-18 109.8 11.5 82 40-122 8-92 (92)
27 cd05867 Ig4_L1-CAM_like Fourth 99.5 1.1E-13 2.4E-18 104.9 11.4 76 140-215 1-76 (76)
28 cd05745 Ig3_Peroxidasin Third 99.5 7.1E-14 1.5E-18 105.3 9.7 74 47-122 1-74 (74)
29 cd05730 Ig3_NCAM-1_like Third 99.5 1.6E-13 3.4E-18 109.6 12.2 84 40-124 10-94 (95)
30 cd05728 Ig4_Contactin-2-like F 99.5 9.1E-14 2E-18 107.8 10.2 84 36-122 2-85 (85)
31 cd05852 Ig5_Contactin-1 Fifth 99.5 8.9E-14 1.9E-18 103.5 9.7 73 48-122 1-73 (73)
32 cd05865 Ig1_NCAM-1 First immun 99.5 1.4E-13 3.1E-18 108.4 11.2 87 36-122 3-95 (96)
33 cd05892 Ig_Myotilin_C C-termin 99.5 1.2E-13 2.6E-18 103.1 9.8 71 51-122 1-75 (75)
34 cd05848 Ig1_Contactin-5 First 99.5 1.9E-13 4.2E-18 107.9 11.6 86 35-120 3-92 (94)
35 KOG4258|consensus 99.5 7.5E-13 1.6E-17 135.7 18.3 279 414-737 499-921 (1025)
36 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 3.1E-13 6.6E-18 104.6 11.8 81 41-122 3-86 (86)
37 cd04972 Ig_TrkABC_d4 Fourth do 99.5 2.5E-13 5.5E-18 106.9 11.5 86 36-122 3-90 (90)
38 cd05850 Ig1_Contactin-2 First 99.5 3.8E-13 8.2E-18 106.4 12.3 85 35-121 3-93 (94)
39 cd05868 Ig4_NrCAM Fourth immun 99.5 2.6E-13 5.7E-18 102.4 10.8 76 140-215 1-76 (76)
40 cd05749 Ig2_Tyro3_like Second 99.5 2.1E-13 4.5E-18 103.3 10.1 78 37-120 2-80 (81)
41 cd04968 Ig3_Contactin_like Thi 99.5 5.4E-13 1.2E-17 104.7 12.5 87 125-214 1-87 (88)
42 cd05728 Ig4_Contactin-2-like F 99.5 2.9E-13 6.3E-18 105.0 10.5 84 128-214 2-85 (85)
43 cd04975 Ig4_SCFR_like Fourth i 99.5 4.6E-13 1E-17 106.4 11.5 83 133-215 11-100 (101)
44 PF07679 I-set: Immunoglobulin 99.5 6E-13 1.3E-17 105.5 12.0 87 35-122 2-90 (90)
45 cd05724 Ig2_Robo Second immuno 99.5 4E-13 8.7E-18 105.3 10.8 83 39-122 2-86 (86)
46 cd05867 Ig4_L1-CAM_like Fourth 99.5 5E-13 1.1E-17 101.3 10.9 72 48-122 1-75 (76)
47 cd05893 Ig_Palladin_C C-termin 99.5 3.5E-13 7.6E-18 100.8 9.5 71 51-122 1-75 (75)
48 cd05863 Ig2_VEGFR-3 Second imm 99.5 4.5E-13 9.7E-18 96.8 9.4 65 51-122 1-65 (67)
49 cd05849 Ig1_Contactin-1 First 99.5 6.8E-13 1.5E-17 104.2 11.2 86 34-121 2-92 (93)
50 cd05852 Ig5_Contactin-1 Fifth 99.5 5E-13 1.1E-17 99.4 9.7 72 140-214 1-73 (73)
51 cd05745 Ig3_Peroxidasin Third 99.5 4.4E-13 9.6E-18 100.9 9.6 74 139-214 1-74 (74)
52 cd05730 Ig3_NCAM-1_like Third 99.5 7.2E-13 1.6E-17 105.8 11.4 91 126-216 2-94 (95)
53 cd05854 Ig6_Contactin-2 Sixth 99.5 6.2E-13 1.3E-17 102.6 10.3 77 49-126 1-85 (85)
54 cd05747 Ig5_Titin_like M5, fif 99.5 6.8E-13 1.5E-17 104.9 10.9 88 124-212 2-91 (92)
55 cd05859 Ig4_PDGFR-alpha Fourth 99.5 9.1E-13 2E-17 105.0 11.5 81 42-123 12-100 (101)
56 cd05891 Ig_M-protein_C C-termi 99.5 9.3E-13 2E-17 103.7 11.4 82 39-121 7-91 (92)
57 cd05868 Ig4_NrCAM Fourth immun 99.5 8.4E-13 1.8E-17 99.7 10.6 74 48-122 1-75 (76)
58 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 1.3E-12 2.9E-17 101.1 11.8 81 134-214 4-86 (86)
59 cd04978 Ig4_L1-NrCAM_like Four 99.4 1E-12 2.2E-17 100.1 10.7 76 140-215 1-76 (76)
60 cd05735 Ig8_DSCAM Eight immuno 99.4 1.2E-12 2.5E-17 102.0 11.0 79 48-127 1-86 (88)
61 cd05737 Ig_Myomesin_like_C C-t 99.4 1.2E-12 2.5E-17 103.5 11.1 83 131-214 7-92 (92)
62 cd07693 Ig1_Robo First immunog 99.4 1.1E-12 2.3E-17 106.7 11.2 90 33-122 1-99 (100)
63 cd05723 Ig4_Neogenin Fourth im 99.4 1.4E-12 3E-17 97.1 10.8 71 50-122 1-71 (71)
64 cd04973 Ig1_FGFR First immunog 99.4 8.1E-13 1.8E-17 100.7 9.8 78 40-121 1-78 (79)
65 cd05892 Ig_Myotilin_C C-termin 99.4 8.5E-13 1.8E-17 98.5 9.5 70 143-214 1-75 (75)
66 cd04977 Ig1_NCAM-1_like First 99.4 1.4E-12 3E-17 102.7 11.1 86 36-122 3-92 (92)
67 PF07679 I-set: Immunoglobulin 99.4 1.5E-12 3.2E-17 103.3 11.3 89 126-214 1-90 (90)
68 cd05863 Ig2_VEGFR-3 Second imm 99.4 9.5E-13 2.1E-17 95.1 9.1 66 143-215 1-66 (67)
69 cd05857 Ig2_FGFR Second immuno 99.4 1.4E-12 3.1E-17 101.8 10.8 79 43-122 4-85 (85)
70 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2.4E-12 5.2E-17 102.9 12.3 88 33-122 3-97 (97)
71 cd04969 Ig5_Contactin_like Fif 99.4 1.3E-12 2.7E-17 98.2 10.0 73 48-122 1-73 (73)
72 cd05722 Ig1_Neogenin First imm 99.4 1.5E-12 3.2E-17 103.8 10.8 86 36-122 2-95 (95)
73 cd05865 Ig1_NCAM-1 First immun 99.4 1.7E-12 3.6E-17 102.3 10.9 84 129-214 4-95 (96)
74 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 1.3E-12 2.8E-17 98.3 9.8 72 51-123 1-74 (74)
75 cd05744 Ig_Myotilin_C_like Imm 99.4 1.7E-12 3.6E-17 97.7 10.1 71 51-122 1-75 (75)
76 cd04978 Ig4_L1-NrCAM_like Four 99.4 1.9E-12 4E-17 98.7 10.5 74 48-122 1-75 (76)
77 cd05760 Ig2_PTK7 Second immuno 99.4 2.2E-12 4.9E-17 97.7 10.7 73 51-123 1-75 (77)
78 cd05870 Ig5_NCAM-2 Fifth immun 99.4 2E-12 4.3E-17 103.6 10.9 84 38-122 6-98 (98)
79 cd05859 Ig4_PDGFR-alpha Fourth 99.4 2.8E-12 6E-17 102.2 11.4 82 134-215 12-100 (101)
80 cd05773 Ig8_hNephrin_like Eigh 99.4 2.8E-12 6.2E-17 104.3 11.5 96 30-126 2-108 (109)
81 cd04976 Ig2_VEGFR Second immun 99.4 2.1E-12 4.6E-17 95.8 9.8 69 51-122 1-69 (71)
82 cd05893 Ig_Palladin_C C-termin 99.4 1.6E-12 3.5E-17 97.2 9.2 70 143-214 1-75 (75)
83 cd05771 IgC_Tapasin_R Tapasin- 99.4 4.6E-12 1E-16 109.1 13.1 115 88-203 2-131 (139)
84 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.7E-12 3.7E-17 95.2 8.8 68 51-121 1-69 (70)
85 cd04972 Ig_TrkABC_d4 Fourth do 99.4 2.1E-12 4.5E-17 101.7 10.0 85 130-214 5-90 (90)
86 cd05876 Ig3_L1-CAM Third immun 99.4 2E-12 4.3E-17 96.3 9.3 70 51-122 1-70 (71)
87 cd05869 Ig5_NCAM-1 Fifth immun 99.4 3.3E-12 7.1E-17 102.1 11.0 90 125-214 2-97 (97)
88 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 4E-12 8.7E-17 93.5 10.5 68 48-120 1-68 (69)
89 cd05735 Ig8_DSCAM Eight immuno 99.4 3.6E-12 7.9E-17 99.2 10.8 75 140-216 1-83 (88)
90 cd05743 Ig_Perlecan_D2_like Im 99.4 2.8E-12 6E-17 97.7 9.9 67 48-114 1-69 (78)
91 cd05848 Ig1_Contactin-5 First 99.4 6.5E-12 1.4E-16 99.2 12.3 82 126-208 2-87 (94)
92 cd05748 Ig_Titin_like Immunogl 99.4 4.2E-12 9E-17 95.9 10.6 72 50-122 1-74 (74)
93 cd05732 Ig5_NCAM-1_like Fifth 99.4 3.6E-12 7.8E-17 102.2 10.9 83 39-122 7-96 (96)
94 cd05849 Ig1_Contactin-1 First 99.4 6.4E-12 1.4E-16 98.7 11.9 82 125-208 1-86 (93)
95 cd05850 Ig1_Contactin-2 First 99.4 9.4E-12 2E-16 98.4 12.9 82 126-208 2-87 (94)
96 cd07693 Ig1_Robo First immunog 99.4 5.2E-12 1.1E-16 102.6 11.8 90 125-214 1-99 (100)
97 cd04970 Ig6_Contactin_like Six 99.4 3.3E-12 7.2E-17 99.3 9.9 77 49-126 1-85 (85)
98 cd05856 Ig2_FGFRL1-like Second 99.4 3.2E-12 6.9E-17 99.3 9.5 79 43-122 4-82 (82)
99 cd04976 Ig2_VEGFR Second immun 99.4 4.2E-12 9.1E-17 94.3 9.6 70 143-215 1-70 (71)
100 cd05746 Ig4_Peroxidasin Fourth 99.4 3.1E-12 6.8E-17 94.7 8.9 68 51-120 1-68 (69)
101 cd05854 Ig6_Contactin-2 Sixth 99.4 6.1E-12 1.3E-16 97.1 10.8 76 141-216 1-83 (85)
102 cd05857 Ig2_FGFR Second immuno 99.4 6.1E-12 1.3E-16 98.2 10.7 80 135-214 4-85 (85)
103 cd04973 Ig1_FGFR First immunog 99.4 4.8E-12 1E-16 96.5 9.6 79 132-214 1-79 (79)
104 cd05722 Ig1_Neogenin First imm 99.4 6.8E-12 1.5E-16 100.0 10.9 86 128-213 2-94 (95)
105 cd05723 Ig4_Neogenin Fourth im 99.4 7.2E-12 1.6E-16 93.3 10.3 71 142-214 1-71 (71)
106 cd05749 Ig2_Tyro3_like Second 99.4 6.2E-12 1.3E-16 95.2 10.0 74 128-208 1-75 (81)
107 cd05870 Ig5_NCAM-2 Fifth immun 99.4 7.5E-12 1.6E-16 100.3 11.0 89 125-214 2-98 (98)
108 cd05853 Ig6_Contactin-4 Sixth 99.4 6E-12 1.3E-16 95.5 9.8 76 141-216 1-83 (85)
109 cd05760 Ig2_PTK7 Second immuno 99.4 5.5E-12 1.2E-16 95.6 9.6 73 143-215 1-75 (77)
110 cd05744 Ig_Myotilin_C_like Imm 99.4 6.6E-12 1.4E-16 94.4 9.9 72 143-214 1-75 (75)
111 cd05891 Ig_M-protein_C C-termi 99.4 8.3E-12 1.8E-16 98.2 10.8 83 131-214 7-92 (92)
112 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1E-11 2.2E-16 91.3 10.5 68 140-212 1-68 (69)
113 cd04969 Ig5_Contactin_like Fif 99.3 5.8E-12 1.3E-16 94.6 9.2 72 140-214 1-73 (73)
114 cd05752 Ig1_FcgammaR_like Frst 99.3 2.5E-12 5.5E-17 96.7 7.2 74 36-121 3-77 (78)
115 cd05875 Ig6_hNeurofascin_like 99.3 1.1E-11 2.3E-16 93.6 10.3 70 51-120 1-76 (77)
116 cd05855 Ig_TrkB_d5 Fifth domai 99.3 7.6E-12 1.6E-16 93.4 9.3 67 53-120 3-76 (79)
117 cd05773 Ig8_hNephrin_like Eigh 99.3 1.1E-11 2.4E-16 100.8 11.1 92 123-216 2-106 (109)
118 cd05763 Ig_1 Subgroup of the i 99.3 6.7E-12 1.4E-16 95.0 9.2 71 51-122 1-74 (75)
119 cd05731 Ig3_L1-CAM_like Third 99.3 7.1E-12 1.5E-16 94.0 9.2 70 51-122 1-70 (71)
120 cd05864 Ig2_VEGFR-2 Second imm 99.3 9.1E-12 2E-16 91.3 9.4 68 143-214 1-68 (70)
121 cd05732 Ig5_NCAM-1_like Fifth 99.3 1.3E-11 2.9E-16 98.9 11.2 89 125-214 2-96 (96)
122 cd05733 Ig6_L1-CAM_like Sixth 99.3 6.3E-12 1.4E-16 95.2 8.7 70 51-120 1-76 (77)
123 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.1E-11 2.4E-16 93.5 10.0 70 51-120 1-76 (77)
124 cd07702 Ig2_VEGFR-1 Second imm 99.3 7.7E-12 1.7E-16 91.7 8.6 68 51-120 1-70 (72)
125 cd05740 Ig_CEACAM_D4 Fourth im 99.3 1.5E-11 3.2E-16 96.2 10.7 80 132-214 10-90 (91)
126 cd05726 Ig4_Robo Fhird immunog 99.3 1.1E-11 2.5E-16 97.4 9.9 76 48-125 1-84 (90)
127 cd05756 Ig1_IL1R_like First im 99.3 7.2E-12 1.6E-16 98.4 8.6 81 41-122 7-94 (94)
128 cd05724 Ig2_Robo Second immuno 99.3 1.5E-11 3.3E-16 96.3 10.4 81 131-212 2-84 (86)
129 cd04967 Ig1_Contactin First Ig 99.3 1.5E-11 3.2E-16 97.0 10.2 81 35-117 3-89 (91)
130 cd05866 Ig1_NCAM-2 First immun 99.3 1.9E-11 4E-16 95.3 10.5 82 129-214 4-91 (92)
131 cd05876 Ig3_L1-CAM Third immun 99.3 1.4E-11 3E-16 91.7 9.0 70 143-214 1-70 (71)
132 PF00041 fn3: Fibronectin type 99.3 7.1E-12 1.5E-16 98.3 7.9 85 505-594 1-85 (85)
133 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1.7E-11 3.6E-16 92.2 9.5 72 143-214 1-73 (74)
134 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 1.8E-11 4E-16 93.0 9.6 68 53-121 3-79 (81)
135 cd05758 Ig5_KIRREL3-like Fifth 99.3 2.9E-11 6.4E-16 96.8 11.3 82 38-120 6-97 (98)
136 cd05763 Ig_1 Subgroup of the i 99.3 1.8E-11 3.9E-16 92.6 9.5 73 143-215 1-75 (75)
137 cd04970 Ig6_Contactin_like Six 99.3 1.6E-11 3.5E-16 95.5 9.4 76 141-216 1-83 (85)
138 cd05855 Ig_TrkB_d5 Fifth domai 99.3 1.4E-11 3.1E-16 91.9 8.6 70 144-213 2-77 (79)
139 cd05756 Ig1_IL1R_like First im 99.3 1.7E-11 3.6E-16 96.3 8.8 81 134-214 8-94 (94)
140 cd04974 Ig3_FGFR Third immunog 99.3 1E-11 2.2E-16 97.5 7.6 74 48-122 1-89 (90)
141 cd05748 Ig_Titin_like Immunogl 99.3 1.7E-11 3.6E-16 92.6 8.5 72 142-214 1-74 (74)
142 cd05753 Ig2_FcgammaR_like Seco 99.3 1.4E-11 3.1E-16 94.4 8.2 79 38-122 4-83 (83)
143 cd05725 Ig3_Robo Third immunog 99.3 2E-11 4.3E-16 90.6 8.5 69 143-214 1-69 (69)
144 cd05752 Ig1_FcgammaR_like Frst 99.3 1.4E-11 3E-16 92.8 7.6 67 126-202 1-68 (78)
145 cd05746 Ig4_Peroxidasin Fourth 99.3 2.4E-11 5.1E-16 90.0 8.7 67 143-212 1-68 (69)
146 cd05764 Ig_2 Subgroup of the i 99.3 3.2E-11 7E-16 91.1 9.7 73 48-122 1-74 (74)
147 cd04979 Ig_Semaphorin_C Immuno 99.3 2.9E-11 6.4E-16 94.9 9.8 83 39-124 2-88 (89)
148 cd05853 Ig6_Contactin-4 Sixth 99.3 4.9E-11 1.1E-15 90.5 10.3 80 323-402 1-85 (85)
149 cd05736 Ig2_Follistatin_like S 99.3 5.2E-11 1.1E-15 90.4 10.2 72 51-123 1-74 (76)
150 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 4.5E-11 9.7E-16 90.9 9.6 70 144-213 2-79 (81)
151 cd05725 Ig3_Robo Third immunog 99.3 3.2E-11 7E-16 89.5 8.5 69 236-304 1-69 (69)
152 cd05873 Ig_Sema4D_like Immunog 99.3 6.9E-11 1.5E-15 90.1 10.3 68 39-109 2-70 (87)
153 cd07702 Ig2_VEGFR-1 Second imm 99.2 4.7E-11 1E-15 87.6 9.0 68 143-212 1-68 (72)
154 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.3E-10 2.8E-15 100.1 13.1 112 181-293 2-131 (139)
155 cd05743 Ig_Perlecan_D2_like Im 99.2 5.2E-11 1.1E-15 90.6 9.3 73 140-212 1-74 (78)
156 cd05856 Ig2_FGFRL1-like Second 99.2 5.1E-11 1.1E-15 92.5 9.2 78 136-214 5-82 (82)
157 cd04967 Ig1_Contactin First Ig 99.2 1.4E-10 3.1E-15 91.4 11.7 82 126-208 2-87 (91)
158 cd05734 Ig7_DSCAM Seventh immu 99.2 4.4E-11 9.5E-16 91.5 8.4 71 51-122 1-79 (79)
159 cd05858 Ig3_FGFR-2 Third immun 99.2 5.4E-11 1.2E-15 93.5 9.0 74 48-122 1-89 (90)
160 cd04977 Ig1_NCAM-1_like First 99.2 9.5E-11 2.1E-15 92.2 10.3 84 128-213 3-91 (92)
161 cd05731 Ig3_L1-CAM_like Third 99.2 6.3E-11 1.4E-15 88.8 9.0 70 143-214 1-70 (71)
162 cd05873 Ig_Sema4D_like Immunog 99.2 1.2E-10 2.6E-15 88.8 10.5 70 131-203 2-71 (87)
163 cd05858 Ig3_FGFR-2 Third immun 99.2 6.3E-11 1.4E-15 93.2 9.2 75 140-214 1-89 (90)
164 cd05758 Ig5_KIRREL3-like Fifth 99.2 1.4E-10 3E-15 92.9 11.3 86 125-212 2-97 (98)
165 cd04974 Ig3_FGFR Third immunog 99.2 6E-11 1.3E-15 93.1 8.7 75 140-214 1-89 (90)
166 cd05764 Ig_2 Subgroup of the i 99.2 1.1E-10 2.3E-15 88.2 9.8 73 140-214 1-74 (74)
167 cd05726 Ig4_Robo Fhird immunog 99.2 1.2E-10 2.7E-15 91.6 9.8 75 233-307 1-84 (90)
168 cd05736 Ig2_Follistatin_like S 99.2 1.8E-10 4E-15 87.4 9.8 73 143-215 1-74 (76)
169 cd07701 Ig1_Necl-3 First (N-te 99.2 1.7E-10 3.7E-15 91.0 9.9 82 39-122 3-95 (95)
170 cd05882 Ig1_Necl-1 First (N-te 99.2 2.6E-10 5.7E-15 89.5 10.7 70 39-108 3-83 (95)
171 cd05750 Ig_Pro_neuregulin Immu 99.2 1.2E-10 2.6E-15 88.4 8.6 64 51-114 1-70 (75)
172 cd05757 Ig2_IL1R_like Second i 99.2 1.9E-10 4.1E-15 89.6 9.6 71 42-114 4-79 (92)
173 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.8E-10 6E-15 87.7 10.3 76 48-123 1-83 (84)
174 cd05765 Ig_3 Subgroup of the i 99.2 2.1E-10 4.5E-15 88.6 9.6 75 140-214 1-81 (81)
175 cd05765 Ig_3 Subgroup of the i 99.2 1.8E-10 4E-15 88.9 8.9 73 48-122 1-81 (81)
176 cd05754 Ig3_Perlecan_like Thir 99.2 2.5E-10 5.4E-15 88.8 9.5 76 35-114 3-79 (85)
177 cd05742 Ig1_VEGFR_like First i 99.1 2.1E-10 4.5E-15 89.0 8.2 74 48-122 1-83 (84)
178 cd05742 Ig1_VEGFR_like First i 99.1 2.5E-10 5.5E-15 88.5 8.4 75 140-214 1-83 (84)
179 cd05875 Ig6_hNeurofascin_like 99.1 5.7E-10 1.2E-14 84.2 9.9 67 143-209 1-72 (77)
180 cd05750 Ig_Pro_neuregulin Immu 99.1 3.2E-10 7E-15 86.0 8.6 69 143-211 1-74 (75)
181 cd05874 Ig6_NrCAM Sixth immuno 99.1 6.4E-10 1.4E-14 83.9 9.7 67 143-209 1-72 (77)
182 cd05733 Ig6_L1-CAM_like Sixth 99.1 3.6E-10 7.9E-15 85.6 8.3 66 143-208 1-71 (77)
183 cd05727 Ig2_Contactin-2-like S 99.1 2.2E-10 4.8E-15 88.5 7.1 72 40-111 10-84 (96)
184 cd05729 Ig2_FGFR_like Second i 99.1 1E-09 2.3E-14 85.8 10.9 79 43-122 4-85 (85)
185 cd05898 Ig5_KIRREL3 Fifth immu 99.1 1.5E-09 3.2E-14 84.9 11.0 82 38-120 6-97 (98)
186 cd05754 Ig3_Perlecan_like Thir 99.1 8E-10 1.7E-14 85.9 9.6 78 130-212 6-84 (85)
187 cd05734 Ig7_DSCAM Seventh immu 99.1 6.6E-10 1.4E-14 84.9 8.5 71 143-213 1-78 (79)
188 PF13895 Ig_2: Immunoglobulin 99.1 1.2E-09 2.5E-14 84.4 10.0 74 41-122 7-80 (80)
189 cd04979 Ig_Semaphorin_C Immuno 99.1 1.3E-09 2.7E-14 85.7 10.2 83 132-215 3-87 (89)
190 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 9.9E-10 2.2E-14 84.6 9.4 76 140-215 1-83 (84)
191 cd05895 Ig_Pro_neuregulin-1 Im 99.1 8.1E-10 1.8E-14 83.7 8.1 64 51-114 1-71 (76)
192 cd05882 Ig1_Necl-1 First (N-te 99.0 1.1E-09 2.3E-14 86.0 8.8 70 132-201 4-83 (95)
193 cd05753 Ig2_FcgammaR_like Seco 99.0 1E-09 2.2E-14 84.2 8.2 70 131-207 5-75 (83)
194 cd05727 Ig2_Contactin-2-like S 99.0 7E-10 1.5E-14 85.8 6.9 73 133-205 11-85 (96)
195 cd05729 Ig2_FGFR_like Second i 99.0 3.3E-09 7.1E-14 82.9 10.5 80 135-214 4-85 (85)
196 cd05895 Ig_Pro_neuregulin-1 Im 99.0 1.9E-09 4E-14 81.8 8.5 69 143-211 1-75 (76)
197 smart00408 IGc2 Immunoglobulin 99.0 2.1E-09 4.7E-14 78.4 8.4 63 47-111 1-63 (63)
198 cd05898 Ig5_KIRREL3 Fifth immu 99.0 5.3E-09 1.1E-13 81.8 10.8 86 125-212 2-97 (98)
199 cd05757 Ig2_IL1R_like Second i 99.0 2.7E-09 5.8E-14 83.2 9.2 75 135-212 5-84 (92)
200 PF00041 fn3: Fibronectin type 99.0 1.8E-09 3.9E-14 84.5 7.9 84 404-492 2-85 (85)
201 cd05845 Ig2_L1-CAM_like Second 99.0 1.3E-09 2.8E-14 84.1 6.8 76 34-110 4-82 (95)
202 cd05897 Ig2_IL1R2_like Second 99.0 3.5E-09 7.6E-14 82.1 8.5 80 43-122 5-93 (95)
203 cd05871 Ig_Semaphorin_classIII 99.0 6.5E-09 1.4E-13 81.1 10.1 78 42-123 5-89 (91)
204 cd07690 Ig1_CD4 First immunogl 99.0 2.8E-09 6.2E-14 82.9 7.8 70 43-112 2-90 (94)
205 cd05717 Ig1_Necl-1-3_like Firs 98.9 6.7E-09 1.5E-13 82.7 10.0 82 39-122 3-95 (95)
206 cd07701 Ig1_Necl-3 First (N-te 98.9 5E-09 1.1E-13 82.7 8.7 82 131-213 3-94 (95)
207 smart00408 IGc2 Immunoglobulin 98.9 7.7E-09 1.7E-13 75.4 8.6 63 139-204 1-63 (63)
208 smart00409 IG Immunoglobulin. 98.9 2.4E-08 5.2E-13 78.3 12.0 82 40-122 1-85 (86)
209 smart00410 IG_like Immunoglobu 98.9 2.4E-08 5.2E-13 78.3 12.0 82 40-122 1-85 (86)
210 PF13895 Ig_2: Immunoglobulin 98.9 1E-08 2.2E-13 79.1 9.2 78 126-214 2-80 (80)
211 cd05862 Ig1_VEGFR First immuno 98.9 1.1E-08 2.4E-13 79.0 9.1 75 48-123 1-85 (86)
212 cd05872 Ig_Sema4B_like Immunog 98.9 1.5E-08 3.3E-13 76.6 9.2 65 41-108 4-68 (85)
213 cd05871 Ig_Semaphorin_classIII 98.9 2.1E-08 4.4E-13 78.3 10.4 80 135-215 6-89 (91)
214 PF00047 ig: Immunoglobulin do 98.9 3.7E-09 8E-14 77.2 5.5 59 48-106 1-64 (64)
215 cd05881 Ig1_Necl-2 First (N-te 98.8 3.1E-08 6.8E-13 77.0 10.0 71 39-109 3-84 (95)
216 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 2.3E-08 4.9E-13 77.5 8.9 81 134-214 9-104 (104)
217 cd05862 Ig1_VEGFR First immuno 98.8 2.8E-08 6E-13 76.8 9.3 76 140-215 1-85 (86)
218 TIGR00864 PCC polycystin catio 98.8 0.0013 2.7E-08 79.7 58.6 320 45-402 1797-2128(2740)
219 cd05885 Ig2_Necl-4 Second immu 98.8 2.7E-08 5.9E-13 74.0 8.2 64 142-205 1-68 (80)
220 cd05860 Ig4_SCFR Fourth immuno 98.8 7.8E-08 1.7E-12 74.3 10.6 83 133-215 11-100 (101)
221 cd05751 Ig1_LILRB1_like First 98.8 1.6E-08 3.4E-13 79.4 7.0 67 41-109 9-75 (91)
222 cd07690 Ig1_CD4 First immunogl 98.8 2.2E-08 4.7E-13 78.0 7.5 70 136-205 3-90 (94)
223 PHA03376 BARF1; Provisional 98.8 1.6E-07 3.6E-12 79.3 12.7 122 42-164 20-163 (221)
224 cd05885 Ig2_Necl-4 Second immu 98.8 2.5E-08 5.5E-13 74.1 7.1 63 50-112 1-68 (80)
225 cd05717 Ig1_Necl-1-3_like Firs 98.8 5.4E-08 1.2E-12 77.5 9.3 81 132-213 4-94 (95)
226 cd05897 Ig2_IL1R2_like Second 98.8 4.1E-08 8.8E-13 76.2 8.1 73 135-207 5-82 (95)
227 cd05845 Ig2_L1-CAM_like Second 98.8 2.2E-08 4.8E-13 77.3 6.5 71 132-204 10-83 (95)
228 cd05872 Ig_Sema4B_like Immunog 98.8 6.6E-08 1.4E-12 73.1 8.9 64 133-200 4-67 (85)
229 KOG4802|consensus 98.7 2.1E-07 4.6E-12 88.1 13.1 187 403-593 146-342 (516)
230 PF00047 ig: Immunoglobulin do 98.7 1.5E-08 3.3E-13 73.9 4.2 59 140-199 1-64 (64)
231 cd05860 Ig4_SCFR Fourth immuno 98.7 2.4E-07 5.2E-12 71.7 10.8 83 40-123 10-100 (101)
232 TIGR00864 PCC polycystin catio 98.7 0.0027 5.7E-08 77.1 56.2 324 39-402 1703-2042(2740)
233 cd05774 Ig_CEACAM_D1 First imm 98.7 1.5E-07 3.4E-12 75.0 9.4 83 38-121 3-104 (105)
234 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 1.1E-07 2.4E-12 73.7 8.2 70 42-111 9-94 (104)
235 PHA03376 BARF1; Provisional 98.7 3.6E-07 7.7E-12 77.3 11.8 123 134-257 20-163 (221)
236 smart00409 IG Immunoglobulin. 98.7 2.3E-07 5E-12 72.5 10.5 81 133-214 2-85 (86)
237 smart00410 IG_like Immunoglobu 98.7 2.3E-07 5E-12 72.5 10.5 81 133-214 2-85 (86)
238 cd05741 Ig_CEACAM_D1_like Firs 98.6 1.4E-07 2.9E-12 74.9 8.4 74 48-122 1-92 (92)
239 cd05759 Ig2_KIRREL3-like Secon 98.6 2.3E-07 5E-12 71.4 8.4 73 50-122 1-82 (82)
240 cd05879 Ig_P0 Immunoglobulin ( 98.6 5E-07 1.1E-11 73.7 10.3 74 38-111 3-104 (116)
241 cd05775 Ig_SLAM-CD84_like_N N- 98.6 1.7E-07 3.7E-12 74.5 6.6 78 46-123 2-97 (97)
242 cd00063 FN3 Fibronectin type 3 98.6 6.1E-07 1.3E-11 71.3 10.1 87 504-595 1-87 (93)
243 cd05774 Ig_CEACAM_D1 First imm 98.5 6.1E-07 1.3E-11 71.6 9.3 75 130-204 3-94 (105)
244 cd04983 IgV_TCR_alpha_like Imm 98.5 5.9E-07 1.3E-11 73.9 8.7 73 38-110 3-93 (109)
245 cd05751 Ig1_LILRB1_like First 98.5 3.7E-07 8E-12 71.6 7.1 74 125-202 2-75 (91)
246 PF13927 Ig_3: Immunoglobulin 98.5 1.3E-07 2.9E-12 71.7 4.1 69 38-108 6-75 (75)
247 cd05900 Ig_Aggrecan Immunoglob 98.5 1.7E-06 3.6E-11 70.0 9.9 76 47-123 1-109 (112)
248 cd05759 Ig2_KIRREL3-like Secon 98.5 8.1E-07 1.8E-11 68.4 7.8 62 143-204 2-70 (82)
249 cd04980 IgV_L_kappa Immunoglob 98.5 1E-06 2.2E-11 71.7 8.8 72 37-108 4-92 (106)
250 cd05881 Ig1_Necl-2 First (N-te 98.4 1.7E-06 3.7E-11 67.3 9.0 69 133-201 5-83 (95)
251 cd05877 Ig_LP_like Immunoglobu 98.4 2.2E-06 4.8E-11 69.8 10.2 77 47-124 1-104 (106)
252 cd05880 Ig_EVA1 Immunoglobulin 98.4 1.7E-06 3.7E-11 71.1 9.4 74 38-111 3-103 (115)
253 cd05899 IgV_TCR_beta Immunoglo 98.4 1.2E-06 2.5E-11 72.0 8.3 71 38-109 3-94 (110)
254 cd05900 Ig_Aggrecan Immunoglob 98.4 3.4E-06 7.4E-11 68.3 10.5 77 139-215 1-109 (112)
255 PF13927 Ig_3: Immunoglobulin 98.4 2.9E-07 6.3E-12 69.8 4.2 74 125-201 1-75 (75)
256 cd05714 Ig_CSPGs_LP Immunoglob 98.4 4.2E-06 9E-11 68.2 10.2 78 139-216 1-104 (106)
257 cd05714 Ig_CSPGs_LP Immunoglob 98.4 4.4E-06 9.6E-11 68.0 10.2 77 47-124 1-104 (106)
258 cd05711 Ig_FcalphaRI Immunoglo 98.3 1.3E-06 2.8E-11 68.8 6.8 70 38-108 5-76 (94)
259 cd05879 Ig_P0 Immunoglobulin ( 98.3 5.1E-06 1.1E-10 67.8 10.3 74 132-205 5-105 (116)
260 cd05878 Ig_Aggrecan_like Immun 98.3 6.1E-06 1.3E-10 67.2 10.6 78 139-216 1-108 (110)
261 cd05718 Ig1_PVR_like First imm 98.3 3.8E-06 8.2E-11 67.4 9.3 73 49-122 1-97 (98)
262 cd05713 Ig_MOG_like Immunoglob 98.3 4.8E-06 1.1E-10 67.0 9.9 74 48-122 1-99 (100)
263 cd05755 Ig2_ICAM-1_like Second 98.3 2.7E-06 5.9E-11 66.5 7.9 78 33-111 1-86 (100)
264 cd00099 IgV Immunoglobulin var 98.3 2E-06 4.3E-11 70.2 7.6 68 44-111 2-91 (105)
265 cd05883 Ig2_Necl-2 Second immu 98.3 4.3E-06 9.2E-11 62.5 8.5 73 143-215 2-80 (82)
266 cd05715 Ig_P0-like Immunoglobu 98.3 4E-06 8.8E-11 69.4 9.1 74 38-111 3-104 (116)
267 cd05883 Ig2_Necl-2 Second immu 98.3 7.5E-06 1.6E-10 61.2 9.5 73 51-124 2-81 (82)
268 PF10179 DUF2369: Uncharacteri 98.3 0.00012 2.5E-09 69.4 19.6 161 459-627 11-201 (300)
269 cd07694 Ig2_CD4 Second immunog 98.3 1.1E-05 2.4E-10 59.9 9.8 76 42-122 8-85 (88)
270 cd05878 Ig_Aggrecan_like Immun 98.3 5.9E-06 1.3E-10 67.3 9.4 76 48-124 2-108 (110)
271 PHA02987 Ig domain OX-2-like p 98.3 5.5E-06 1.2E-10 71.1 9.1 85 41-125 23-124 (189)
272 PF07686 V-set: Immunoglobulin 98.3 1.1E-05 2.4E-10 67.1 10.9 85 38-122 6-114 (114)
273 cd05899 IgV_TCR_beta Immunoglo 98.2 3.8E-06 8.2E-11 68.9 7.3 73 130-203 3-95 (110)
274 cd04984 IgV_L_lambda Immunoglo 98.2 5.6E-06 1.2E-10 66.2 8.1 65 44-108 2-84 (98)
275 cd05877 Ig_LP_like Immunoglobu 98.2 1E-05 2.2E-10 66.0 9.6 77 139-215 1-103 (106)
276 cd05755 Ig2_ICAM-1_like Second 98.2 7E-06 1.5E-10 64.2 8.1 76 129-204 5-86 (100)
277 smart00060 FN3 Fibronectin typ 98.2 9.2E-06 2E-10 62.6 8.7 80 506-590 3-82 (83)
278 PHA03273 envelope glycoprotein 98.2 0.0012 2.6E-08 64.9 24.3 220 26-256 81-376 (486)
279 KOG4802|consensus 98.2 6.3E-06 1.4E-10 78.4 8.5 122 564-730 208-342 (516)
280 cd05713 Ig_MOG_like Immunoglob 98.2 1.7E-05 3.6E-10 63.8 9.7 75 140-214 1-99 (100)
281 cd05887 Ig1_Nectin-3_like Firs 98.2 2.4E-05 5.3E-10 61.0 10.1 73 49-122 1-95 (96)
282 cd05741 Ig_CEACAM_D1_like Firs 98.2 1.2E-05 2.5E-10 63.7 8.6 66 140-205 1-82 (92)
283 cd07694 Ig2_CD4 Second immunog 98.2 2.3E-05 5E-10 58.3 9.3 77 134-215 8-86 (88)
284 cd00063 FN3 Fibronectin type 3 98.2 2.2E-05 4.8E-10 62.1 10.4 88 403-495 2-89 (93)
285 cd05761 Ig2_Necl-1-4_like Seco 98.2 1.4E-05 3E-10 61.2 8.5 61 51-111 2-69 (82)
286 cd05775 Ig_SLAM-CD84_like_N N- 98.1 5.5E-06 1.2E-10 65.8 6.3 77 138-214 2-96 (97)
287 cd00098 IgC Immunoglobulin Con 98.1 6E-06 1.3E-10 65.8 6.6 66 46-111 11-86 (95)
288 cd04982 IgV_TCR_gamma Immunogl 98.1 7.4E-06 1.6E-10 68.1 7.0 70 39-108 4-98 (116)
289 cd07705 Ig2_Necl-1 Second immu 98.1 2E-05 4.3E-10 60.2 8.7 60 51-110 2-69 (83)
290 cd05846 Ig1_MRC-OX-2_like Firs 98.1 2.4E-05 5.2E-10 62.3 9.4 75 48-122 1-96 (97)
291 cd04983 IgV_TCR_alpha_like Imm 98.1 1.4E-05 3E-10 65.6 8.3 71 223-293 3-93 (109)
292 cd05886 Ig1_Nectin-1_like Firs 98.1 4E-05 8.7E-10 60.5 10.3 74 49-123 1-99 (99)
293 cd05902 Ig_Neurocan Immunoglob 98.1 2.5E-05 5.5E-10 62.9 9.1 75 48-123 2-107 (110)
294 cd05718 Ig1_PVR_like First imm 98.1 2.8E-05 6.1E-10 62.3 9.4 74 141-214 1-97 (98)
295 cd05880 Ig_EVA1 Immunoglobulin 98.1 2.7E-05 5.8E-10 64.1 9.4 74 131-204 4-103 (115)
296 cd05901 Ig_Versican Immunoglob 98.1 6.8E-05 1.5E-09 60.4 11.1 76 140-215 2-114 (117)
297 cd05902 Ig_Neurocan Immunoglob 98.1 3.4E-05 7.3E-10 62.2 9.2 77 139-215 1-107 (110)
298 cd05769 IgC_TCR_beta T cell re 98.1 2.9E-05 6.3E-10 62.9 8.8 80 32-111 2-93 (115)
299 cd05888 Ig1_Nectin-4_like Frst 98.1 4.1E-05 8.9E-10 61.2 9.7 73 49-122 1-99 (100)
300 cd05887 Ig1_Nectin-3_like Firs 98.0 3.7E-05 8E-10 60.0 9.0 75 141-215 1-96 (96)
301 PHA02987 Ig domain OX-2-like p 98.0 3.2E-05 7E-10 66.5 9.3 83 134-216 24-123 (189)
302 cd05711 Ig_FcalphaRI Immunoglo 98.0 2.1E-05 4.6E-10 61.9 7.8 74 126-201 2-76 (94)
303 cd07706 IgV_TCR_delta Immunogl 98.0 2.1E-05 4.5E-10 65.3 8.1 72 37-108 3-93 (116)
304 cd05901 Ig_Versican Immunoglob 98.0 7.5E-05 1.6E-09 60.2 10.8 75 48-123 2-114 (117)
305 PHA03269 envelope glycoprotein 98.0 0.0005 1.1E-08 67.6 18.1 193 88-291 290-512 (566)
306 cd05886 Ig1_Nectin-1_like Firs 98.0 8.3E-05 1.8E-09 58.7 10.5 73 142-214 2-98 (99)
307 cd04980 IgV_L_kappa Immunoglob 98.0 1.3E-05 2.8E-10 65.2 6.0 75 128-202 3-93 (106)
308 cd07699 IgC_L Immunoglobulin C 98.0 2.8E-05 6.1E-10 61.9 7.8 78 32-109 1-88 (100)
309 PHA03270 envelope glycoprotein 98.0 0.00062 1.3E-08 66.2 17.9 192 88-290 183-400 (466)
310 cd05715 Ig_P0-like Immunoglobu 98.0 7E-05 1.5E-09 62.0 10.3 74 131-204 4-104 (116)
311 cd05846 Ig1_MRC-OX-2_like Firs 98.0 4.8E-05 1E-09 60.6 8.9 75 140-214 1-96 (97)
312 cd05884 Ig2_Necl-3 Second immu 98.0 3.3E-05 7.2E-10 58.8 7.5 62 143-204 2-70 (83)
313 cd05772 IgC_SIRP Signal-regula 98.0 0.00011 2.3E-09 59.5 10.7 79 31-110 4-92 (111)
314 cd00098 IgC Immunoglobulin Con 98.0 2.2E-05 4.8E-10 62.5 6.7 67 138-204 11-86 (95)
315 cd05716 Ig_pIgR Immunoglobulin 98.0 3.3E-05 7.2E-10 61.8 7.7 68 43-110 2-87 (98)
316 cd05888 Ig1_Nectin-4_like Frst 98.0 8.1E-05 1.8E-09 59.5 9.7 73 142-214 2-99 (100)
317 cd07700 IgV_CD8_beta Immunoglo 97.9 2.9E-05 6.4E-10 63.1 7.2 65 44-108 2-93 (107)
318 cd07705 Ig2_Necl-1 Second immu 97.9 3.3E-05 7.2E-10 59.0 6.9 61 143-204 2-70 (83)
319 cd05712 Ig_Siglec_N Immunoglob 97.9 7.2E-05 1.6E-09 62.2 9.3 72 38-109 4-102 (119)
320 cd05761 Ig2_Necl-1-4_like Seco 97.9 7E-05 1.5E-09 57.3 8.2 61 143-204 2-69 (82)
321 cd05889 Ig1_DNAM-1_like First 97.9 0.0001 2.2E-09 57.7 9.1 66 49-114 1-88 (96)
322 cd05884 Ig2_Necl-3 Second immu 97.9 7.2E-05 1.6E-09 57.0 7.9 60 51-110 2-69 (83)
323 PF07686 V-set: Immunoglobulin 97.9 7.3E-05 1.6E-09 62.0 8.4 73 130-202 6-101 (114)
324 cd04982 IgV_TCR_gamma Immunogl 97.8 5.7E-05 1.2E-09 62.7 7.3 72 130-201 3-98 (116)
325 cd04981 IgV_H Immunoglobulin ( 97.8 9.9E-05 2.1E-09 60.9 8.6 71 38-108 2-97 (117)
326 cd05768 IgC_CH4 CH4 domain (fo 97.8 7.4E-05 1.6E-09 59.6 6.8 77 33-109 1-90 (102)
327 cd07698 IgC_MHC_I_alpha3 Class 97.8 0.0003 6.5E-09 55.4 9.8 74 33-110 3-83 (93)
328 cd00099 IgV Immunoglobulin var 97.8 9.5E-05 2.1E-09 60.2 7.2 66 229-294 2-91 (105)
329 cd07697 IgC_TCR_gamma T cell r 97.7 0.00019 4.1E-09 56.1 8.3 74 33-109 1-84 (96)
330 cd05770 IgC_beta2m Class I maj 97.7 0.00024 5.1E-09 55.2 8.8 66 138-203 13-83 (93)
331 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00025 5.4E-09 55.5 8.7 69 137-205 11-88 (94)
332 PHA03270 envelope glycoprotein 97.7 0.0065 1.4E-07 59.4 19.5 160 180-351 182-362 (466)
333 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00026 5.7E-09 55.3 8.6 73 38-110 4-86 (94)
334 cd05772 IgC_SIRP Signal-regula 97.7 0.00032 6.9E-09 56.8 9.1 69 134-203 15-92 (111)
335 KOG1480|consensus 97.7 1.1E-05 2.4E-10 83.3 0.8 170 34-207 25-210 (909)
336 cd05720 Ig_CD8_alpha Immunoglo 97.7 0.00012 2.6E-09 59.0 6.6 65 44-108 2-90 (104)
337 PHA03273 envelope glycoprotein 97.7 0.0044 9.5E-08 61.2 18.0 158 180-347 198-376 (486)
338 PHA03271 envelope glycoprotein 97.7 0.011 2.3E-07 57.4 20.1 163 180-350 207-387 (490)
339 cd07699 IgC_L Immunoglobulin C 97.7 0.00016 3.5E-09 57.6 7.0 68 136-203 13-89 (100)
340 smart00407 IGc1 Immunoglobulin 97.7 0.00051 1.1E-08 51.4 9.3 60 50-109 1-70 (75)
341 cd04984 IgV_L_lambda Immunoglo 97.6 8.8E-05 1.9E-09 59.3 5.3 66 136-201 2-84 (98)
342 smart00407 IGc1 Immunoglobulin 97.6 0.00036 7.8E-09 52.2 8.2 62 142-203 1-71 (75)
343 cd05766 IgC_MHC_II_beta Class 97.6 0.00044 9.5E-09 54.2 8.9 67 138-204 12-84 (94)
344 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.00047 1E-08 54.2 9.2 64 140-203 14-83 (93)
345 KOG4258|consensus 97.6 9E-05 1.9E-09 77.9 6.4 132 462-600 781-921 (1025)
346 cd05766 IgC_MHC_II_beta Class 97.6 0.00074 1.6E-08 52.9 9.9 62 46-110 12-83 (94)
347 PHA03269 envelope glycoprotein 97.6 0.0071 1.5E-07 59.9 18.4 160 180-350 289-471 (566)
348 cd07706 IgV_TCR_delta Immunogl 97.6 0.00022 4.8E-09 59.1 7.3 73 129-201 3-93 (116)
349 cd00096 Ig Immunoglobulin doma 97.6 0.00036 7.8E-09 51.7 7.8 61 143-203 1-66 (74)
350 cd05889 Ig1_DNAM-1_like First 97.6 0.00056 1.2E-08 53.5 8.6 71 141-211 1-92 (96)
351 KOG0613|consensus 97.6 0.00049 1.1E-08 76.5 11.1 443 131-593 235-714 (1205)
352 PF08205 C2-set_2: CD80-like C 97.6 0.0005 1.1E-08 53.8 8.4 66 140-205 14-86 (89)
353 cd05716 Ig_pIgR Immunoglobulin 97.6 0.00034 7.3E-09 55.9 7.5 69 135-203 2-87 (98)
354 cd05767 IgC_MHC_II_alpha Class 97.6 0.00078 1.7E-08 52.6 9.2 61 46-109 13-83 (94)
355 PHA03271 envelope glycoprotein 97.5 0.014 2.9E-07 56.8 18.8 193 88-291 208-430 (490)
356 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.00075 1.6E-08 52.9 8.6 77 32-110 1-87 (95)
357 cd05767 IgC_MHC_II_alpha Class 97.5 0.00084 1.8E-08 52.4 8.7 63 138-203 13-84 (94)
358 cd00096 Ig Immunoglobulin doma 97.5 0.00036 7.8E-09 51.8 6.4 60 51-110 1-66 (74)
359 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00021 4.6E-09 49.7 4.4 52 45-108 4-55 (65)
360 smart00060 FN3 Fibronectin typ 97.5 0.0012 2.7E-08 50.3 9.6 79 404-488 3-82 (83)
361 cd05770 IgC_beta2m Class I maj 97.4 0.0017 3.6E-08 50.5 9.6 63 45-109 12-82 (93)
362 cd05712 Ig_Siglec_N Immunoglob 97.4 0.00092 2E-08 55.5 8.6 72 131-202 5-102 (119)
363 cd07696 IgC_CH3 CH3 domain (th 97.4 0.00031 6.8E-09 55.1 5.4 73 37-109 3-85 (96)
364 cd07696 IgC_CH3 CH3 domain (th 97.4 0.00049 1.1E-08 54.1 6.2 73 131-203 5-86 (96)
365 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00067 1.4E-08 54.1 6.8 68 136-203 12-91 (102)
366 COG3401 Fibronectin type 3 dom 97.3 0.013 2.9E-07 55.5 15.4 162 415-594 82-245 (343)
367 cd05720 Ig_CD8_alpha Immunoglo 97.3 0.00063 1.4E-08 54.8 6.0 66 136-201 2-90 (104)
368 cd07697 IgC_TCR_gamma T cell r 97.3 0.0011 2.4E-08 51.8 7.1 70 132-203 8-85 (96)
369 cd05721 IgV_CTLA-4 Immunoglobu 97.3 0.0015 3.3E-08 52.0 7.8 69 37-106 2-93 (115)
370 cd05769 IgC_TCR_beta T cell re 97.3 0.0016 3.6E-08 52.8 8.0 76 132-207 10-96 (115)
371 KOG4152|consensus 97.2 0.0016 3.5E-08 64.5 9.2 124 468-593 652-788 (830)
372 cd07700 IgV_CD8_beta Immunoglo 97.2 0.00099 2.1E-08 54.1 6.5 65 136-200 2-92 (107)
373 cd04986 IgC_CH2 CH2 domain (se 97.2 0.00082 1.8E-08 52.5 5.7 78 32-110 3-89 (99)
374 PF08205 C2-set_2: CD80-like C 97.2 0.0011 2.4E-08 51.8 6.6 63 48-110 14-84 (89)
375 cd04981 IgV_H Immunoglobulin ( 97.2 0.0015 3.2E-08 54.0 7.5 71 131-201 3-97 (117)
376 cd07689 Ig2_VCAM-1 Second immu 97.2 0.0018 3.9E-08 49.8 6.8 64 45-109 12-85 (99)
377 cd04985 IgC_CH1 CH1 domain (fi 97.2 0.0034 7.4E-08 49.2 8.7 64 139-203 15-87 (95)
378 smart00406 IGv Immunoglobulin 97.1 0.0014 3E-08 50.2 6.2 57 50-106 1-81 (81)
379 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.0019 4.2E-08 45.3 5.6 50 47-108 5-54 (69)
380 PF07654 C1-set: Immunoglobuli 97.0 0.0025 5.3E-08 48.9 6.7 63 139-204 7-78 (83)
381 KOG4367|consensus 97.0 0.00053 1.1E-08 65.9 3.5 77 514-597 449-525 (699)
382 PF07654 C1-set: Immunoglobuli 97.0 0.0022 4.8E-08 49.2 6.3 61 47-110 7-77 (83)
383 cd07704 Ig2_Nectin-3-4_like Se 97.0 0.0035 7.6E-08 48.7 7.2 71 38-109 6-83 (97)
384 cd04986 IgC_CH2 CH2 domain (se 97.0 0.002 4.3E-08 50.4 5.7 70 132-203 11-89 (99)
385 PHA02914 Immunoglobulin-like d 96.9 0.45 9.7E-06 46.4 32.9 298 42-350 20-421 (500)
386 KOG1480|consensus 96.9 0.00051 1.1E-08 71.5 2.4 90 34-124 130-220 (909)
387 KOG4228|consensus 96.8 0.0058 1.3E-07 67.4 9.8 252 378-739 1-253 (1087)
388 cd07692 Ig_CD3_epsilon Immunog 96.8 0.0023 5E-08 44.7 4.3 52 138-202 5-56 (65)
389 PF10179 DUF2369: Uncharacteri 96.8 0.56 1.2E-05 45.1 25.8 130 460-593 125-288 (300)
390 PRK14081 triple tyrosine motif 96.7 1.1 2.4E-05 48.2 32.7 275 42-336 299-606 (667)
391 cd07691 Ig_CD3_gamma_delta Imm 96.7 0.0043 9.4E-08 43.6 5.2 50 139-201 5-54 (69)
392 KOG0613|consensus 96.7 0.0052 1.1E-07 68.8 8.5 202 87-289 278-512 (1205)
393 smart00406 IGv Immunoglobulin 96.6 0.004 8.6E-08 47.6 5.3 58 142-199 1-81 (81)
394 KOG3632|consensus 96.6 0.023 5.1E-07 61.3 12.0 158 406-587 582-740 (1335)
395 cd05719 Ig2_PVR_like Second im 96.6 0.0097 2.1E-07 46.6 7.0 65 140-204 15-83 (95)
396 PHA02982 hypothetical protein; 96.5 0.036 7.7E-07 48.4 10.1 117 42-165 33-173 (251)
397 PHA02633 hypothetical protein; 96.4 0.011 2.4E-07 40.4 5.5 39 178-216 16-54 (63)
398 PHA02633 hypothetical protein; 96.4 0.016 3.5E-07 39.6 6.2 41 84-125 15-55 (63)
399 PF08204 V-set_CD47: CD47 immu 96.4 0.0055 1.2E-07 50.1 4.8 76 138-214 25-119 (130)
400 cd07689 Ig2_VCAM-1 Second immu 96.4 0.015 3.3E-07 44.8 6.8 64 137-201 12-84 (99)
401 cd07703 Ig2_Nectin-2_like Seco 96.4 0.013 2.8E-07 45.8 6.6 60 49-110 16-82 (95)
402 cd05719 Ig2_PVR_like Second im 96.4 0.023 5E-07 44.5 7.9 72 48-121 15-94 (95)
403 cd07704 Ig2_Nectin-3-4_like Se 96.3 0.016 3.5E-07 45.0 6.8 70 134-203 10-84 (97)
404 PF11465 Receptor_2B4: Natural 96.2 0.014 3.1E-07 45.1 5.5 46 78-123 62-107 (108)
405 PF01108 Tissue_fac: Tissue fa 96.1 0.021 4.6E-07 46.2 6.9 83 502-590 20-104 (107)
406 PF09294 Interfer-bind: Interf 96.1 0.014 3E-07 47.3 5.8 80 509-596 7-100 (106)
407 KOG4367|consensus 96.0 0.0078 1.7E-07 58.1 4.5 82 414-501 450-531 (699)
408 cd07703 Ig2_Nectin-2_like Seco 96.0 0.02 4.4E-07 44.7 6.1 64 141-204 16-83 (95)
409 KOG4152|consensus 96.0 0.019 4.1E-07 57.3 6.9 66 568-639 650-724 (830)
410 cd05721 IgV_CTLA-4 Immunoglobu 96.0 0.055 1.2E-06 43.3 8.1 70 130-199 3-93 (115)
411 PF06328 Lep_receptor_Ig: Ig-l 95.7 0.065 1.4E-06 41.2 7.3 70 38-107 8-82 (89)
412 PF09067 EpoR_lig-bind: Erythr 95.6 0.048 1E-06 43.3 6.7 85 502-590 6-95 (104)
413 PF08204 V-set_CD47: CD47 immu 95.4 0.025 5.5E-07 46.3 4.3 77 44-122 23-119 (130)
414 PF07354 Sp38: Zona-pellucida- 95.1 0.034 7.4E-07 51.0 4.8 48 61-109 11-59 (271)
415 PF01108 Tissue_fac: Tissue fa 94.8 0.2 4.4E-06 40.5 8.2 80 399-486 19-102 (107)
416 KOG3632|consensus 94.7 0.21 4.6E-06 54.4 10.0 183 392-597 661-862 (1335)
417 COG3401 Fibronectin type 3 dom 94.7 0.74 1.6E-05 44.2 12.4 189 435-640 5-197 (343)
418 KOG4228|consensus 94.2 0.22 4.7E-06 55.7 9.1 104 480-596 144-247 (1087)
419 PHA03042 CD47-like protein; Pr 94.1 0.18 3.9E-06 46.5 6.9 70 46-121 29-103 (286)
420 PF09294 Interfer-bind: Interf 93.9 0.13 2.8E-06 41.6 5.3 63 670-739 42-106 (106)
421 PHA03042 CD47-like protein; Pr 93.7 0.28 6.2E-06 45.3 7.4 63 139-207 30-97 (286)
422 PF09067 EpoR_lig-bind: Erythr 93.6 0.44 9.5E-06 37.9 7.6 82 400-488 6-95 (104)
423 COG4733 Phage-related protein, 93.6 2.7 5.8E-05 45.7 15.2 32 561-593 656-687 (952)
424 PF06328 Lep_receptor_Ig: Ig-l 93.4 0.53 1.2E-05 36.2 7.5 66 224-289 9-81 (89)
425 PHA02914 Immunoglobulin-like d 92.7 3.7 8E-05 40.4 13.4 154 43-204 274-468 (500)
426 PF05790 C2-set: Immunoglobuli 92.6 1.2 2.5E-05 33.5 8.1 53 62-122 26-78 (80)
427 PHA02865 MHC-like TNF binding 92.5 0.56 1.2E-05 45.6 8.0 21 50-70 216-238 (338)
428 KOG4597|consensus 92.3 0.23 5E-06 49.5 5.1 94 29-123 191-292 (560)
429 KOG4597|consensus 92.2 0.22 4.7E-06 49.7 4.8 88 129-216 200-293 (560)
430 PHA03286 envelope glycoprotein 91.9 4.1 9E-05 40.9 13.1 76 86-161 126-225 (492)
431 PHA03283 envelope glycoprotein 91.5 5.2 0.00011 41.1 13.5 76 85-161 132-233 (542)
432 PF02124 Marek_A: Marek's dise 91.3 11 0.00024 34.2 15.2 127 64-200 8-158 (211)
433 PF11465 Receptor_2B4: Natural 91.2 0.55 1.2E-05 36.7 5.1 59 157-215 46-107 (108)
434 PF05790 C2-set: Immunoglobuli 91.1 2.8 6E-05 31.5 8.7 52 154-214 26-78 (80)
435 PHA02982 hypothetical protein; 90.9 1.8 3.8E-05 38.3 8.4 122 134-262 33-177 (251)
436 PF03921 ICAM_N: Intercellular 90.0 3.9 8.4E-05 31.5 8.7 85 36-127 6-90 (91)
437 PF06832 BiPBP_C: Penicillin-B 89.6 6.6 0.00014 30.3 10.2 56 50-115 31-86 (89)
438 KOG4806|consensus 89.6 18 0.00039 35.1 14.4 27 459-485 166-192 (454)
439 PHA03282 envelope glycoprotein 89.3 20 0.00044 36.4 15.2 38 86-123 123-161 (540)
440 PHA02865 MHC-like TNF binding 89.0 1.8 3.9E-05 42.3 7.8 21 142-162 216-238 (338)
441 PHA03283 envelope glycoprotein 88.8 24 0.00052 36.6 15.6 76 179-254 133-233 (542)
442 PHA03282 envelope glycoprotein 88.8 30 0.00064 35.3 15.9 29 174-202 118-146 (540)
443 PF07354 Sp38: Zona-pellucida- 88.7 0.68 1.5E-05 42.8 4.5 46 247-292 12-59 (271)
444 KOG1026|consensus 88.0 0.86 1.9E-05 49.6 5.5 159 42-215 201-363 (774)
445 KOG1225|consensus 87.5 2.5 5.4E-05 44.3 8.3 147 414-582 377-524 (525)
446 PF02480 Herpes_gE: Alphaherpe 87.4 2.7 5.8E-05 43.6 8.5 75 87-161 89-189 (439)
447 PHA03052 Hypothetical protein; 87.2 2.1 4.5E-05 30.1 5.0 35 40-74 4-41 (69)
448 PF09240 IL6Ra-bind: Interleuk 87.1 6.5 0.00014 31.1 8.8 82 404-489 1-87 (99)
449 PHA03281 envelope glycoprotein 86.0 33 0.00072 35.7 14.7 76 86-161 297-394 (642)
450 PHA03286 envelope glycoprotein 86.0 43 0.00093 34.1 16.1 76 179-254 126-225 (492)
451 PHA03052 Hypothetical protein; 85.9 4.7 0.0001 28.5 6.2 36 132-167 4-42 (69)
452 PF02480 Herpes_gE: Alphaherpe 85.3 3.7 8.1E-05 42.6 8.3 78 177-254 86-189 (439)
453 COG4733 Phage-related protein, 84.5 6.2 0.00013 43.1 9.4 127 459-593 656-785 (952)
454 PF09240 IL6Ra-bind: Interleuk 84.0 11 0.00023 29.9 8.7 87 507-596 2-92 (99)
455 PRK14081 triple tyrosine motif 81.8 87 0.0019 34.4 43.1 402 45-486 203-651 (667)
456 PF02010 REJ: REJ domain; Int 81.3 1.5 3.2E-05 46.6 3.7 259 142-403 2-302 (440)
457 PF02124 Marek_A: Marek's dise 80.6 46 0.00099 30.4 13.8 94 249-350 8-117 (211)
458 PF07495 Y_Y_Y: Y_Y_Y domain; 79.3 3.8 8.3E-05 29.3 4.3 27 703-730 30-56 (66)
459 PHA03281 envelope glycoprotein 79.3 86 0.0019 32.8 16.8 77 178-254 296-394 (642)
460 cd05890 Ig2_Nectin-1_like Seco 79.1 5.5 0.00012 30.6 4.9 70 143-212 23-96 (98)
461 KOG1225|consensus 77.9 4.3 9.4E-05 42.6 5.6 156 506-678 368-524 (525)
462 PF02010 REJ: REJ domain; Int 77.5 5.5 0.00012 42.2 6.6 290 50-345 2-340 (440)
463 PF06832 BiPBP_C: Penicillin-B 76.8 32 0.00069 26.5 9.3 56 142-208 31-86 (89)
464 PF02440 Adeno_E3_CR1: Adenovi 73.7 8.4 0.00018 27.2 4.4 52 45-100 2-63 (63)
465 PLN02533 probable purple acid 72.0 16 0.00035 38.2 8.1 77 502-583 39-121 (427)
466 KOG1026|consensus 71.9 6.6 0.00014 43.2 5.3 250 42-308 61-366 (774)
467 PHA03240 envelope glycoprotein 70.0 5.9 0.00013 35.1 3.6 64 43-106 33-124 (258)
468 KOG4806|consensus 67.4 42 0.00092 32.7 8.8 121 469-593 290-438 (454)
469 PLN02533 probable purple acid 67.3 51 0.0011 34.5 10.6 87 401-501 40-135 (427)
470 PHA03189 UL14 tegument protein 66.1 46 0.001 31.8 8.7 20 186-205 139-158 (348)
471 PF07495 Y_Y_Y: Y_Y_Y domain; 64.2 23 0.0005 25.2 5.4 28 464-492 30-57 (66)
472 cd05890 Ig2_Nectin-1_like Seco 62.0 22 0.00048 27.4 4.8 63 236-300 23-94 (98)
473 PF14292 SusE: SusE outer memb 59.7 90 0.002 25.8 8.8 32 515-546 42-74 (122)
474 PF10342 GPI-anchored: Ser-Thr 59.4 47 0.001 25.7 6.8 66 516-584 11-78 (93)
475 PF12988 DUF3872: Domain of un 58.9 1.1E+02 0.0023 25.6 9.3 41 29-69 28-73 (137)
476 PHA03189 UL14 tegument protein 56.4 85 0.0018 30.2 8.6 21 225-245 59-79 (348)
477 PF13750 Big_3_3: Bacterial Ig 55.4 1.4E+02 0.0031 26.0 10.5 25 569-593 116-140 (158)
478 PF13754 Big_3_4: Bacterial Ig 53.3 62 0.0013 22.0 5.6 33 704-737 16-48 (54)
479 PF03921 ICAM_N: Intercellular 52.6 1.1E+02 0.0023 23.8 10.0 81 221-308 6-89 (91)
480 PF11141 DUF2914: Protein of u 51.6 88 0.0019 22.5 6.8 48 64-114 8-58 (66)
481 PF13750 Big_3_3: Bacterial Ig 50.4 1.7E+02 0.0038 25.5 12.4 23 706-728 116-138 (158)
482 KOG0200|consensus 47.9 1.6E+02 0.0036 32.7 11.1 108 86-201 12-138 (609)
483 PHA03240 envelope glycoprotein 45.4 31 0.00067 30.9 3.8 22 178-199 103-124 (258)
484 TIGR00868 hCaCC calcium-activa 43.7 5.8E+02 0.013 29.6 27.4 87 503-590 755-854 (863)
485 PF13754 Big_3_4: Bacterial Ig 41.4 90 0.0019 21.2 5.0 37 461-498 12-48 (54)
486 smart00089 PKD Repeats in poly 41.2 1.4E+02 0.0031 21.9 7.1 63 138-213 12-77 (79)
487 PHA02579 7 baseplate wedge sub 40.4 97 0.0021 34.0 7.2 88 507-604 8-102 (1030)
488 PHA03112 IL-18 binding protein 34.1 1.9E+02 0.0042 24.5 6.6 26 138-163 36-63 (141)
489 PF11344 DUF3146: Protein of u 33.8 31 0.00068 25.0 1.7 15 571-585 66-80 (80)
490 PF09423 PhoD: PhoD-like phosp 32.9 2.2E+02 0.0047 30.3 8.8 51 461-516 62-112 (453)
491 PF00801 PKD: PKD domain; Int 32.6 1.6E+02 0.0035 21.0 5.6 30 42-71 5-34 (69)
492 PHA02935 Hypothetical protein; 31.4 99 0.0021 27.3 4.7 85 65-151 69-166 (349)
493 KOG3611|consensus 30.9 92 0.002 35.0 5.6 58 50-109 571-634 (737)
494 COG4704 Uncharacterized protei 30.2 96 0.0021 25.6 4.1 31 695-727 70-100 (151)
495 KOG3834|consensus 30.1 96 0.0021 31.5 5.0 70 509-582 67-137 (462)
496 PHA03112 IL-18 binding protein 29.3 2.2E+02 0.0047 24.2 6.1 26 46-71 36-63 (141)
497 PF11049 KSHV_K1: Glycoprotein 28.0 98 0.0021 21.9 3.2 43 237-290 2-44 (71)
498 PF07703 A2M_N_2: Alpha-2-macr 26.4 3.8E+02 0.0083 22.3 8.6 108 39-149 4-118 (136)
499 PF01688 Herpes_gI: Alphaherpe 25.9 1.3E+02 0.0028 26.3 4.5 26 181-206 125-150 (161)
500 COG5475 Uncharacterized small 24.3 1.8E+02 0.0039 19.8 3.8 33 79-113 10-42 (60)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.5e-86 Score=694.91 Aligned_cols=681 Identities=31% Similarity=0.519 Sum_probs=585.0
Q ss_pred ecceeEeeeceEEEEEEecccCCcccCCCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCE-ecCCCCCeEe
Q psy11701 4 QSRSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV-PINPSDRISQ 82 (745)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~-~i~~~~~~~~ 82 (745)
.+.....+++++.|.++... ...+++|.+.+..|.......|+.+.|.|.+.|+|.|+|.|+|.+. ++ ..+...
T Consensus 215 ~~~~~~v~~~~~~L~~~~~~---~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~--~~r~~~ 289 (1051)
T KOG3513|consen 215 PSTQTIVQGPPFPLIVRSNN---VMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPP--PRRATY 289 (1051)
T ss_pred hhhcccccCCceeEEEcccc---cccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCC--Ccceee
Confidence 35667889999999998777 7888999999999999999999999999999999999999999766 44 456666
Q ss_pred ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC
Q psy11701 83 GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN 162 (745)
Q Consensus 83 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~ 162 (745)
...+++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..+|.++..+.+..+..|++++|.|.+.|.|.|.++|++|
T Consensus 290 ~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~-~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkN 368 (1051)
T KOG3513|consen 290 SNYGKVLKIPNVQYEDAGEYECIAENSRGSAT-HSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKN 368 (1051)
T ss_pred eccccEEEecccCcCCCeEEEEEEecccccce-eeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeC
Confidence 68889999999999999999999999999555 88999999999999999999999999999999999999999999999
Q ss_pred CEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCce--EEecCceEEEEE
Q psy11701 163 GKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDE--YTVDGKTVVLTC 240 (745)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~--~v~~g~~~~l~C 240 (745)
|.++.......+.....+.|+|.++...|+|+|+|.|+|..|....++.|.|+..+|.+...+-.. .+..|..+.|.|
T Consensus 369 g~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C 448 (1051)
T KOG3513|consen 369 GEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDC 448 (1051)
T ss_pred CeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEee
Confidence 999998888888999999999999999999999999999999999999999999889988877655 577899999999
Q ss_pred EEeecCCCeEEEeeCCE-EccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEE
Q psy11701 241 RVFGAPKPEVNWIHNQK-ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319 (745)
Q Consensus 241 ~~~~~p~~~i~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~ 319 (745)
...+.|.+.+.|.+++. .+.++++.+..+|+|.|.+++.+|+|.|+|.|.|..|.......|.|+.++.+...|....+
T Consensus 449 ~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v 528 (1051)
T KOG3513|consen 449 KPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDV 528 (1051)
T ss_pred ccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhh
Confidence 99999999999999887 55788999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCC----eEEEEecCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND----YSLTVTKSSELDSGQYTCRAQTELDFIEAQAT 395 (745)
Q Consensus 320 ~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~ 395 (745)
..|+.+.|.|.+..++.+++.+.|.++|..+.+..........+ +.|.|.+++..|.|.|.|.|+..+.+.++.+.
T Consensus 529 ~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~ 608 (1051)
T KOG3513|consen 529 KVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARAD 608 (1051)
T ss_pred ccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccc
Confidence 99999999999999999999999999999988764443333333 34999999999999999999998888888999
Q ss_pred EEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCce---eEEEeccccc
Q psy11701 396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGES---TTTEVDKFVP 472 (745)
Q Consensus 396 l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~L~~ 472 (745)
+.|+.||.||.++.+.. .+.+++.|+|++++.. +.+|..|.|+++....+ .|..+..-.... .+.++-+|.|
T Consensus 609 l~V~gpPgpP~~v~~~~-i~~t~~~lsW~~g~dn--~SpI~~Y~iq~rt~~~~--~W~~v~~vp~~~~~~~sa~vv~L~P 683 (1051)
T KOG3513|consen 609 LLVRGPPGPPPDVHVDD-ISDTTARLSWSPGSDN--NSPIEKYTIQFRTPFPG--KWKAVTTVPGNITGDESATVVNLSP 683 (1051)
T ss_pred eEEecCCCCCCceeEee-eccceEEEEeecCCCC--CCCceEEeEEecCCCCC--cceEeeECCCcccCccceeEEccCC
Confidence 99999999999999988 8999999999996644 47799999999877443 333332202222 3577889999
Q ss_pred CcceeEEEEEecCCCCCCCCcce-EEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCC--CCCCceeeEEEEEEEcCCc-
Q psy11701 473 ASKNFARVLAFNGAYNGPPSEII-SFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGT- 547 (745)
Q Consensus 473 ~~~Y~~~V~a~n~~G~g~~S~~~-~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~- 547 (745)
..+|+|||.|.|..|.|++|.+. .++|.+++|. .|.++.......+.+.|.|+|-. ..||+-.+|+|.|+..+..
T Consensus 684 wv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~ 763 (1051)
T KOG3513|consen 684 WVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADK 763 (1051)
T ss_pred CcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCc
Confidence 99999999999999999999865 4889999996 79999999989999999999865 4789999999999998877
Q ss_pred ccCCcccccccccCCCcceeeecC--CCCCccEEEEEEEEecCCCCCCcceee-ecc----cCCCCCCCCCCCCCcceeE
Q psy11701 548 KVGPLLERLPYISDPTTTSAKLAG--LEPSTKYRIHLAGYTKAGDGAESKYLF-YVP----FKNPDNVEGRGSTPNNLVI 620 (745)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~l~~--L~p~t~Y~~~V~a~n~~G~g~~S~~~~-~~~----~~~~~~~~~~~~~p~~~~v 620 (745)
.|.... +.+.+...+.+.+ ..|++.|++.|.|+|..|.|+.|..+. +.. ...++.+.+.+.+.+.+.|
T Consensus 764 ~W~~~~-----v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v 838 (1051)
T KOG3513|consen 764 EWKEVI-----VSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNL 838 (1051)
T ss_pred ccceeE-----ecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEE
Confidence 555443 3344455566554 567999999999999999999987652 121 1222344455667789999
Q ss_pred EEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCC
Q psy11701 621 SWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGE 700 (745)
Q Consensus 621 ~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~ 700 (745)
+|+++.. .||.+++|.|+|...++.. ++...+.+ .++
T Consensus 839 ~W~~~~~--~nG~l~gY~v~Y~~~~~~~----------------------------------------~~~~~~~i-~~~ 875 (1051)
T KOG3513|consen 839 SWKPPLW--DNGKLTGYEVKYWKINEKE----------------------------------------GSLSRVQI-AGN 875 (1051)
T ss_pred EecCcCc--cCCccceeEEEEEEcCCCc----------------------------------------ccccceee-cCC
Confidence 9988765 4499999999998764432 11122222 478
Q ss_pred CcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCCCc
Q psy11701 701 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGT 743 (745)
Q Consensus 701 ~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~~ 743 (745)
.++..|+||+|+|.|.|.|+|+|.+|.||+|.....+|..+++
T Consensus 876 ~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~pP 918 (1051)
T KOG3513|consen 876 RTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAPP 918 (1051)
T ss_pred cceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCCC
Confidence 9999999999999999999999999999999999998887764
No 2
>KOG4221|consensus
Probab=100.00 E-value=2.5e-71 Score=575.40 Aligned_cols=684 Identities=24% Similarity=0.374 Sum_probs=554.6
Q ss_pred cccCCCCCeeEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCC-----C
Q psy11701 27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEF-----S 97 (745)
Q Consensus 27 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~-----~ 97 (745)
.....-|..|+++|++. .+|..+.|.|.+... +.+.|.|.|||..+... ++...-. +++|.|.++.. -
T Consensus 35 ~~~~~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~Ls-NgSl~i~~v~~~kh~~~ 111 (1381)
T KOG4221|consen 35 SIQANTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLS-NGSLYISSVLASKHNKV 111 (1381)
T ss_pred hhhccCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhcc-CCceeEeeecccccccc
Confidence 44556688899999976 899999999998433 46799999999877643 3333222 45688888866 7
Q ss_pred CCEEEEEEEEeC-CeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee
Q psy11701 98 DQGSYTCEVSNG-VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK 176 (745)
Q Consensus 98 d~G~Y~C~~~~~-~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~ 176 (745)
|.|.|+|.|.-. .|...+..+.|.+...+.|..++.+.++..|+++.|.|.+.+.|.+.+.|.||..++.... ....
T Consensus 112 ~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~--r~i~ 189 (1381)
T KOG4221|consen 112 DEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDS--RVIV 189 (1381)
T ss_pred cCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCC--cEEE
Confidence 899999999865 7888889999999999999999999999999999999999998888999999999877443 4456
Q ss_pred ecCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEEeecC-----CeeeeCCCceEEecCceEEEEEEEeecCCCeE
Q psy11701 177 VGPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNVLAHA-----PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEV 250 (745)
Q Consensus 177 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v~~~~-----p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i 250 (745)
..++.|.|.++..+|.|.|+|.|++..... +..+.++|...+ ..|...|....+..|+++.|.|.+.+.|.+.|
T Consensus 190 lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v 269 (1381)
T KOG4221|consen 190 LPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSV 269 (1381)
T ss_pred cCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCce
Confidence 678999999999999999999999875433 344677776322 23677888999999999999999999999999
Q ss_pred EEeeCCEEccCc--eEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEE
Q psy11701 251 NWIHNQKELTGG--RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328 (745)
Q Consensus 251 ~W~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~ 328 (745)
.|.+|+..+.-. ++.....+.|.|.+++..|+|.|+|.|.|......+.+.|.|..+|.++..|..+...++..+.|.
T Consensus 270 ~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~e 349 (1381)
T KOG4221|consen 270 KWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFE 349 (1381)
T ss_pred EEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEe
Confidence 999999887544 566666789999999999999999999997777788899999999999999999999899999999
Q ss_pred EEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEecc-------
Q psy11701 329 CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP------- 401 (745)
Q Consensus 329 C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~p------- 401 (745)
|.+.+.|. +.+.|++++..+.. ...+.+..+..+.|..+-..|.|.|.|.+.|..|.....+.+.+...
T Consensus 350 c~~~g~p~--p~v~w~kNgd~~ip--sdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~ 425 (1381)
T KOG4221|consen 350 CPVSGKPI--PTVRWYKNGDRIIP--SDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSD 425 (1381)
T ss_pred CCCCCCCc--ceEEEEecCcccCc--ccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccC
Confidence 99999864 88999999988775 33344444444899999999999999999999999988888865433
Q ss_pred --CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701 402 --LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 479 (745)
Q Consensus 402 --p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~ 479 (745)
+.+|..+.+.. .+.+.+.++|.++ . ..++.+..|.+.|....+..... +.....+ ...++.+|++.+.|.|+
T Consensus 426 ~~~sap~~lv~~~-~~srfi~~tw~~p-~-~~~g~i~~~~v~~~~~~~~rer~--~~tss~g-~~~tv~nl~p~t~Y~~r 499 (1381)
T KOG4221|consen 426 LLPSAPRDLVANL-VSSRFIQLTWRPP-A-QISGNISTYTVFYKVEGDVRERL--QNTSSPG-IQVTVQNLSPLTMYFFR 499 (1381)
T ss_pred ccccCCcceeccc-ccceeEEEeecCc-c-ccCCCcceEEEEEecCCchhhhh--eeccCCc-eEEEeeecccceeEEEE
Confidence 34566676665 7888999999953 3 77888999999776554432222 2221233 78899999999999999
Q ss_pred EEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccc
Q psy11701 480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559 (745)
Q Consensus 480 V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~ 559 (745)
|.|.|..|.|..|.++.+.+... +++. +.+...+..+|.+.|.+|.-+||+|++|++.|...+...+.. +
T Consensus 500 v~A~n~~g~g~sS~pLkV~t~pE--gp~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~-------~ 569 (1381)
T KOG4221|consen 500 VRAKNEAGSGESSAPLKVTTQPE--GPVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELR-------V 569 (1381)
T ss_pred EeccCcccCCccCCceEEecCCC--CCcc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEE-------E
Confidence 99999999999999999998665 3344 999999999999999999988999999999999874332221 2
Q ss_pred cCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCC-----CCCCCCCCCcceeEEEeecCccccCCCc
Q psy11701 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD-----NVEGRGSTPNNLVISWTAMPEIEHNAPH 634 (745)
Q Consensus 560 ~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~-----~~~~~~~~p~~~~v~W~~~~~~~~~g~i 634 (745)
..+..+++|.+|.++|+|.|+|.|+|.+|.|..|..+.+.+....+ ++.+...++++|+|+|.+|+....||.|
T Consensus 570 -~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~i 648 (1381)
T KOG4221|consen 570 -ENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQI 648 (1381)
T ss_pred -ecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceE
Confidence 4567899999999999999999999999999999888776544322 2344456779999999999999999999
Q ss_pred ceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEE--------------------
Q psy11701 635 FKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIREL-------------------- 694 (745)
Q Consensus 635 ~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~-------------------- 694 (745)
++|.|+|+......+.... +...+...+.+.+|++.+.|.|++.|.+..|.|+.+....
T Consensus 649 tgYkIRy~~~~~~~~~~~t-~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~ 727 (1381)
T KOG4221|consen 649 TGYKIRYRKLSREDEVNET-VVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELH 727 (1381)
T ss_pred EEEEEEecccCccccccee-ecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceee
Confidence 9999999865444433232 2333568889999999999999999977666665443221
Q ss_pred ----------------------------------------EEecCCCcEEEecccccCCcceeEEEEecCcccCCCC-cc
Q psy11701 695 ----------------------------------------IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS-EI 733 (745)
Q Consensus 695 ----------------------------------------~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s-~~ 733 (745)
+.+++..+.|.|+.|.|+..|.+++.|+|..|.|.+. ++
T Consensus 728 ~~~g~~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~ 807 (1381)
T KOG4221|consen 728 VHPGSNSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYES 807 (1381)
T ss_pred eccCceeEEEEeCCCCChhhhhcceEEeeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeee
Confidence 5557889999999999999999999999999999886 33
Q ss_pred eEEe
Q psy11701 734 ISFV 737 (745)
Q Consensus 734 ~~~~ 737 (745)
+.++
T Consensus 808 ~~tR 811 (1381)
T KOG4221|consen 808 VKTR 811 (1381)
T ss_pred eeec
Confidence 4444
No 3
>KOG4221|consensus
Probab=100.00 E-value=1.4e-70 Score=569.75 Aligned_cols=688 Identities=25% Similarity=0.352 Sum_probs=536.5
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
+..|...+.+..+..|+++.|.|.+.+.|.+.+.|.||+.+|..+.++.... ++.|.|..++..|.|.|+|.|++....
T Consensus 140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp-sG~L~I~~~qp~d~g~yrc~vt~g~~~ 218 (1381)
T KOG4221|consen 140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP-SGALEISGLQPSDTGEYRCVVTGGASQ 218 (1381)
T ss_pred cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC-CCcEEecccccCCCceEEEEEecCCcC
Confidence 3446678889999999999999999999999999999999998777766544 457999999999999999999987666
Q ss_pred eEEEEEEEEEEecC------eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eecCceEEEc
Q psy11701 113 AKSYSIDLSVLAAP------YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNRITIE 185 (745)
Q Consensus 113 ~~~~~~~l~V~~~p------~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~L~i~ 185 (745)
..+..++|+|...| .|...|....+.+|+++.|.|.+.+.|.|+|.|.+||+.+.... .++ ..+.+.|.|.
T Consensus 219 r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds--~rivl~g~~slliS 296 (1381)
T KOG4221|consen 219 RTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS--YRIVLVGGSSLLIS 296 (1381)
T ss_pred CccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc--eEEEEecccceEEe
Confidence 66777888888544 36778899999999999999999999999999999999987433 333 3457899999
Q ss_pred cCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEcc-CceE
Q psy11701 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRY 264 (745)
Q Consensus 186 ~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~-~~~~ 264 (745)
+++..|+|.|+|+|.|........+.|.|+. +|.|...|......++.++.|.|.+.+.|.+.+.|+++|..+. ...+
T Consensus 297 ~a~~~dSg~YtC~Atn~~D~idasaev~V~a-~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ 375 (1381)
T KOG4221|consen 297 NATDDDSGKYTCRATNTNDSIDASAEVTVLA-PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYF 375 (1381)
T ss_pred ccccccCceEEEEecCCCcccccceEEEEEc-CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccce
Confidence 9999999999999999777777888889986 7999999999999999999999999999999999999988764 4445
Q ss_pred EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc------eeecCCCcEEEecCCeEEEEEEEE-----e
Q psy11701 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT------HITDQPEDYEVEAGQSATFRCNAV-----S 333 (745)
Q Consensus 265 ~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p------~~~~~p~~~~~~~g~~~~l~C~~~-----~ 333 (745)
.+..++.|.|..+-..|.|.|+|.+.|..|.....+.+.+-..| .+...|..+.+..-...-+.|.+. +
T Consensus 376 ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~ 455 (1381)
T KOG4221|consen 376 KIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQIS 455 (1381)
T ss_pred EecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccC
Confidence 55555669999999999999999999999998888777554332 123334444444334444444443 1
Q ss_pred cCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEe
Q psy11701 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV 413 (745)
Q Consensus 334 ~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~ 413 (745)
.+. ..+.|+........ ....-.....-.+.+.++.....+.++|.|.|..|....+..|.|..+|.+|..+.+..
T Consensus 456 g~i--~~~~v~~~~~~~~r-er~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~a- 531 (1381)
T KOG4221|consen 456 GNI--STYTVFYKVEGDVR-ERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYA- 531 (1381)
T ss_pred CCc--ceEEEEEecCCchh-hhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccc-
Confidence 121 45666643322211 11111112224677888888888888999999999999999999999998887788877
Q ss_pred ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCc
Q psy11701 414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493 (745)
Q Consensus 414 ~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~ 493 (745)
.+..++.+.|++| ...|++|++|++.|...+. ..++.+ ..+..+++|.+|++.++|.|+|.|+|.+|.|..|.
T Consensus 532 ts~~ti~v~WepP--~~~n~~I~~yk~~ys~~~~----~~~~~~-~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~ 604 (1381)
T KOG4221|consen 532 TSPTTILVTWEPP--PFGNGPITGYKLFYSEDDT----GKELRV-ENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSA 604 (1381)
T ss_pred cCcceEEEEecCC--CCCCCCceEEEEEEEcCCC----CceEEE-ecCccEEEeecCCCccceEEEEEEecCCCCCCCCC
Confidence 8899999999984 4678999999998866622 233445 66889999999999999999999999999999999
Q ss_pred ceEEeCCCCCCCCCCc-eeEEEcCCceEEEEeeCCC--CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeec
Q psy11701 494 IISFVTPEGVPGTVQS-LEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 570 (745)
Q Consensus 494 ~~~~~t~~~~P~~p~~-~~~~~~~~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 570 (745)
.+.+.|..+.|++|++ +++...++++|.|+|.+|. ..+|.|++|.|+|+.........+. +..++.+.+.+.
T Consensus 605 ~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t-----~v~~n~~~~l~~ 679 (1381)
T KOG4221|consen 605 DITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNET-----VVKGNTTQYLFN 679 (1381)
T ss_pred ceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCccccccee-----ecccchhhhHhh
Confidence 9999999999986555 9999999999999999986 4688999999999976654333222 224577899999
Q ss_pred CCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCC--C------CCCcceeEEEeecCccccCCCcceEEEEEe
Q psy11701 571 GLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGR--G------STPNNLVISWTAMPEIEHNAPHFKYRIFWR 642 (745)
Q Consensus 571 ~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~--~------~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~ 642 (745)
+|+|+|.|.|+|.|.|..|.|++|+++...+...-.+..++ + ...++|.++|+|++.. +-.+.+|.|.|+
T Consensus 680 ~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~~g~~si~vsW~Pp~~~--~~~vrgY~ig~r 757 (1381)
T KOG4221|consen 680 GLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVHPGSNSIVVSWTPPPHP--NIVVRGYKIGYR 757 (1381)
T ss_pred cCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeeccCceeEEEEeCCCCCh--hhhhcceEEeee
Confidence 99999999999999999999999998855443322222111 1 1237889999987754 335689999998
Q ss_pred ccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEE----------------------------
Q psy11701 643 RHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIREL---------------------------- 694 (745)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~---------------------------- 694 (745)
+- .+.+.......+...+.|.+..|.+...|.|++.|+.+.|+|.......
T Consensus 758 ~g-~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S 836 (1381)
T KOG4221|consen 758 PG-SGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALS 836 (1381)
T ss_pred cc-cCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccc
Confidence 43 3333333344555678999999999999999999966655553322111
Q ss_pred ------------------------------------EEecCCCcEEEecccccCCcceeEEEEec-CcccCCCCcceEEe
Q psy11701 695 ------------------------------------IVNKGESTTTEVDKFVPASKNFARVLAFN-GAYNGPPSEIISFV 737 (745)
Q Consensus 695 ------------------------------------~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~-~~G~g~~s~~~~~~ 737 (745)
......+.++.+.+|+|++.|+|-|.+.- ..-.|.||..+..+
T Consensus 837 ~tsI~v~w~~~~~~t~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~ 916 (1381)
T KOG4221|consen 837 STSIRVTWADNKDQTTDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENR 916 (1381)
T ss_pred cceEEEEEecCCCccccceEEEEEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeee
Confidence 11234566677799999999999999877 44458899999999
Q ss_pred CCCCCc
Q psy11701 738 TPEGGT 743 (745)
Q Consensus 738 t~~~~~ 743 (745)
|.+..+
T Consensus 917 tle~~P 922 (1381)
T KOG4221|consen 917 TLELVP 922 (1381)
T ss_pred ecccCC
Confidence 987553
No 4
>KOG3513|consensus
Probab=100.00 E-value=1.2e-69 Score=568.02 Aligned_cols=648 Identities=26% Similarity=0.400 Sum_probs=491.0
Q ss_pred CCeeEeeccceeEecCCc--EEEEEEEeecCCCeeEEEECCEecCCCC--CeEeccCCcEEEEccCC-CCCCEEEEEEEE
Q psy11701 33 PKQQYVTRKKEVALRNKK--VELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVE-FSDQGSYTCEVS 107 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~--~~l~C~~~g~p~~~v~W~~~~~~i~~~~--~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~ 107 (745)
|.+...........+-+. ++|.|.+.|+|.|++.|+|||..+.... ++.+. +++|.|.+.. ..|.|.|+|.|+
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~G~lvI~~p~~~~d~G~YqC~As 117 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--GGTLVITNPDAALDQGIYQCFAS 117 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee--cCceEecCCcchhhcceeEEEee
Confidence 555444444445555444 9999999999999999999999887543 34433 6789998887 889999999999
Q ss_pred eCCeeeEEEEEEEEEEecC-------------------------------------------------------------
Q psy11701 108 NGVGEAKSYSIDLSVLAAP------------------------------------------------------------- 126 (745)
Q Consensus 108 ~~~g~~~~~~~~l~V~~~p------------------------------------------------------------- 126 (745)
|..|...+..+.|.....+
T Consensus 118 N~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyf 197 (1051)
T KOG3513|consen 118 NKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYF 197 (1051)
T ss_pred cccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEE
Confidence 9999988877776554311
Q ss_pred --------------------------------------------eEEe-cCceeEeeCCCeEEEEEEEeecCCCeEEEEe
Q psy11701 127 --------------------------------------------YFTV-EPEFINAAEEETVTFECKASGLPEPEIHWVH 161 (745)
Q Consensus 127 --------------------------------------------~~~~-~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~ 161 (745)
.+.. .|.......|+.+.|.|-+.|+|.|++.|+|
T Consensus 198 s~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k 277 (1051)
T KOG3513|consen 198 SNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRK 277 (1051)
T ss_pred eecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEe
Confidence 1111 2334556789999999999999999999999
Q ss_pred CCEe-ccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEE
Q psy11701 162 NGKP-ISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240 (745)
Q Consensus 162 ~g~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C 240 (745)
.+.. +. ...........|.|.++..+|+|.|+|.|.|..|.......|.|.. +|.++..+.+..+..|++++|.|
T Consensus 278 ~~g~~~~---~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a-~P~w~~~~~d~~~~~gs~v~~eC 353 (1051)
T KOG3513|consen 278 VDGKPPP---RRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYA-PPYWLQKPQDTEADTGSNVTLEC 353 (1051)
T ss_pred CCCCCCC---cceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEec-CchhhcccceeEecCCCCeEEEE
Confidence 7763 33 2223344567999999999999999999999999989999999985 88999999999999999999999
Q ss_pred EEeecCCCeEEEeeCCEEccCceE---EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeec-ceeecCCCc
Q psy11701 241 RVFGAPKPEVNWIHNQKELTGGRY---TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH-THITDQPED 316 (745)
Q Consensus 241 ~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~-p~~~~~p~~ 316 (745)
.+.|.|.+.|+|++|+.++..... .....+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|... |.+...|..
T Consensus 354 ~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~ 433 (1051)
T KOG3513|consen 354 KASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVE 433 (1051)
T ss_pred EecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccc
Confidence 999999999999999999874433 5567889999999999999999999999999999999999876 666666644
Q ss_pred E--EEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701 317 Y--EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394 (745)
Q Consensus 317 ~--~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~ 394 (745)
. .+..|..+.|.|...+.|. +.++|.+++..+. ...++.+..+++|.|.+++.+|.|.|+|.|.|..|......
T Consensus 434 ~~~~a~~g~~v~i~C~~~asP~--p~~~W~k~~~~~~--~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~ 509 (1051)
T KOG3513|consen 434 RKVMAVVGGTVTIDCKPFASPK--PKVSWLKGGEKLL--QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTG 509 (1051)
T ss_pred eEEEEEeCCeEEEeeccCCCCc--ceEEEEcCCcccc--cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEE
Confidence 3 5678999999999999885 8899999988444 67788888999999999999999999999999999999999
Q ss_pred EEEEeccCC---CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCC---CceeE-EEEccCceeEEEe
Q psy11701 395 TLTVQVPLE---APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE---GSIRE-LIVNKGESTTTEV 467 (745)
Q Consensus 395 ~l~v~~pp~---~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~---~~~~~-~~~~~~~~~~~~i 467 (745)
.|.|+.++. +|.+..+ ....+++|.|+...+.... -.+.|+.++... ..... ......+...++|
T Consensus 510 ~L~Vkd~tri~~~P~~~~v---~~g~~v~l~Ce~shD~~ld-----~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i 581 (1051)
T KOG3513|consen 510 NLIVKDATRITLAPSNTDV---KVGESVTLTCEASHDPSLD-----ITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTI 581 (1051)
T ss_pred EEEEecCceEEeccchhhh---ccCceEEEEeecccCCCcc-----eEEEEEECCEEhhccCCCCceEEeCCcCccceEE
Confidence 999986643 5555444 5578899999986544433 222233322210 01111 1111122245667
Q ss_pred cccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCc
Q psy11701 468 DKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547 (745)
Q Consensus 468 ~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~ 547 (745)
.+..-.....|.|.|......-.....+.++ ++|+||.++++..++.+++.|+|.++++++++|..|.|+++..-..
T Consensus 582 ~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~---gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~ 658 (1051)
T KOG3513|consen 582 ANVSLEDSGKYTCVAQTALDSASARADLLVR---GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPG 658 (1051)
T ss_pred EeeccccCceEEEEEEEeecchhcccceEEe---cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCC
Confidence 6644444444444444433332233334554 7888899999999999999999999999999999999999987555
Q ss_pred ccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec------ccCCCCCCCCCCCCCcceeEE
Q psy11701 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV------PFKNPDNVEGRGSTPNNLVIS 621 (745)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~------~~~~~~~~~~~~~~p~~~~v~ 621 (745)
.|....+....+ .++ .+..+.+|.|..+|+|||.|.|..|.|.||.++... +...|.++.+-...+++|.|+
T Consensus 659 ~W~~v~~vp~~~-~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvIt 736 (1051)
T KOG3513|consen 659 KWKAVTTVPGNI-TGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVIT 736 (1051)
T ss_pred cceEeeECCCcc-cCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEE
Confidence 454443211111 222 357788999999999999999999999999877322 223445556667889999999
Q ss_pred EeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCC
Q psy11701 622 WTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGES 701 (745)
Q Consensus 622 W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~ 701 (745)
|++.+....||...+|+|.|++.+....|....+.+.+...+++.+.
T Consensus 737 W~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~--------------------------------- 783 (1051)
T KOG3513|consen 737 WEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNE--------------------------------- 783 (1051)
T ss_pred eccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCC---------------------------------
Confidence 99999999999999999999998777677776665444333322222
Q ss_pred cEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCCC
Q psy11701 702 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGG 742 (745)
Q Consensus 702 ~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~ 742 (745)
.-.|.+.|++.|+|+|..|+|+.|+.+.+-+.|+.
T Consensus 784 ------st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~ 818 (1051)
T KOG3513|consen 784 ------STEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDE 818 (1051)
T ss_pred ------CCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCC
Confidence 23456778888888888888888887777765543
No 5
>KOG4222|consensus
Probab=100.00 E-value=1.1e-54 Score=449.25 Aligned_cols=656 Identities=26% Similarity=0.383 Sum_probs=490.7
Q ss_pred cccCCCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC----CCCeEeccCCcEEEEccC----CCCC
Q psy11701 27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP----SDRISQGNYGKSLIIKHV----EFSD 98 (745)
Q Consensus 27 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~----~~~~~~~~~~~~L~i~~~----~~~d 98 (745)
.+...+|.+ +.-|.++.+.-|+.++|.|.+.|.|.|+++|+|+|+.... .+|+.+. .+..+.+.-+ ...|
T Consensus 26 r~qd~~p~i-iehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp-~gsLf~l~~ahg~~a~~d 103 (1281)
T KOG4222|consen 26 RAQDQPPRI-IEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLP-DGSLFLLRLAHGKKAGHD 103 (1281)
T ss_pred ccccCCCce-EecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecC-CccEEEEecccCCcccCC
Confidence 455555555 5778999999999999999999999999999999975443 3445432 2332222211 2339
Q ss_pred CEEEEEEEEeCCeeeEEEEEEEEEEe-cCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCcee
Q psy11701 99 QGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRK 176 (745)
Q Consensus 99 ~G~Y~C~~~~~~g~~~~~~~~l~V~~-~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~ 176 (745)
.|.|.|.+.|..|...+....|.|.. .-.|.+.|.+..+..|+.+.|.|.- .|+|.+.+.|.|+|+.+..........
T Consensus 104 ~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l 183 (1281)
T KOG4222|consen 104 HGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL 183 (1281)
T ss_pred CceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE
Confidence 99999999999999998877777754 4568889999999999999999987 679999999999999998444344455
Q ss_pred ecCceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeC
Q psy11701 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN 255 (745)
Q Consensus 177 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~ 255 (745)
+..+.|.|.+++.+|.|.|.|++.|..|..... +.+.|.+ +|.+...+....+..|..+.+.|.+.|.|.+.+.|.++
T Consensus 184 isgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e-~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~ 262 (1281)
T KOG4222|consen 184 ISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE-KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKD 262 (1281)
T ss_pred ecCCcEEEeccccCCCceeeeeecccccccccccceeeecc-CCccccccccceeecccccccccccCCCCCCceeeecc
Confidence 678899999999999999999999999987766 7888885 89999999999999999999999999999999999999
Q ss_pred CEEccCceEEEeec-CcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEec
Q psy11701 256 QKELTGGRYTILET-GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334 (745)
Q Consensus 256 ~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~ 334 (745)
+..++-.++.+..+ .+|.|.+++..|.|.|.|.+.|..|...+...+.|+.+|.+...|....+..|..++|.|.+.+.
T Consensus 263 ~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gn 342 (1281)
T KOG4222|consen 263 DPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGN 342 (1281)
T ss_pred CCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCC
Confidence 99999899988777 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCee-ccC-----CCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe---------
Q psy11701 335 PSLKLSIVWLRGSEP-IDF-----ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ--------- 399 (745)
Q Consensus 335 ~~~~~~i~W~~~~~~-~~~-----~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~--------- 399 (745)
|. +.+.|.+.+.. +-+ ....+..+...+.|.|+++...|.|.|.|...+..|.......+.+.
T Consensus 343 P~--PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPp 420 (1281)
T KOG4222|consen 343 PP--PAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPP 420 (1281)
T ss_pred CC--cceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCC
Confidence 97 78999987643 211 12233333444567777777777777777766666654433333322
Q ss_pred --------------------------------------------------------------------------------
Q psy11701 400 -------------------------------------------------------------------------------- 399 (745)
Q Consensus 400 -------------------------------------------------------------------------------- 399 (745)
T Consensus 421 p~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges 500 (1281)
T KOG4222|consen 421 PIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGES 500 (1281)
T ss_pred ceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCccccc
Confidence
Q ss_pred ------------------------ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEE
Q psy11701 400 ------------------------VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455 (745)
Q Consensus 400 ------------------------~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~ 455 (745)
..|.+|....+.. +..++++|+|.+..+ .+.+++.+|.+++.....+.. |...
T Consensus 501 ~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~-v~~~~v~LsW~~~s~-sg~vP~s~yiieafs~~~~et-w~~t 577 (1281)
T KOG4222|consen 501 TWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVN-VSRTSVTLSWQPTSP-SGAVPASGYIIEAFSPDLGET-WQTT 577 (1281)
T ss_pred ccceeeEhhhcCcccccccCCChhhCCCCCCCCcccc-CCCceEEecccCCCC-CCccccchhHHHHhhhhhccc-cccc
Confidence 2233444444445 778999999998543 567889999998876655432 2222
Q ss_pred EEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceE-EeCCCCCCC---------------CCCce-eEEEcCCc
Q psy11701 456 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIIS-FVTPEGVPG---------------TVQSL-EAIPLGSS 518 (745)
Q Consensus 456 ~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~-~~t~~~~P~---------------~p~~~-~~~~~~~~ 518 (745)
-- ......+.|.+|+|...|.|.|+|.|..|.+.++.... ++|.+..+. +...+ ....+..+
T Consensus 578 a~-~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~as 656 (1281)
T KOG4222|consen 578 AG-RVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNAS 656 (1281)
T ss_pred cc-ccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchh
Confidence 11 34677899999999999999999999999988876332 445433221 11111 12344688
Q ss_pred eEEEEeeCCCCC-CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCccee
Q psy11701 519 AFYLKWVKPEQP-NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL 597 (745)
Q Consensus 519 ~i~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~ 597 (745)
++.+.|..+..+ ..-|.+|+|.|+.... ...++.... +......++.+.+|+|++.|+|.+..+...|..--+...
T Consensus 657 slr~~w~~~kq~~~~~i~g~~I~~r~~~~-~~a~~s~~~--v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS 733 (1281)
T KOG4222|consen 657 SLRLGWTKDKQHGSQYIQGYRISYRSLGS-QLAQWSNAG--VTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPS 733 (1281)
T ss_pred heeeeeeeecccCcccccceEEEeccCcc-ccccccccc--eeccCCcceeccccCCCccceeeccCccCCCcceecCCc
Confidence 999999988753 3579999999998876 333333222 335667889999999999999999999886543332222
Q ss_pred eecccCCCCCCC-CCCC----------CCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEec
Q psy11701 598 FYVPFKNPDNVE-GRGS----------TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLA 666 (745)
Q Consensus 598 ~~~~~~~~~~~~-~~~~----------~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (745)
..++..+....+ +++. .-+...|+|.+++.+..||++.+|.|...-- + .
T Consensus 734 ~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~-e--~----------------- 793 (1281)
T KOG4222|consen 734 NSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGG-E--K----------------- 793 (1281)
T ss_pred ccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecC-c--c-----------------
Confidence 222333332211 1111 1266789999999888899999998854311 0 0
Q ss_pred cCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEE
Q psy11701 667 NQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF 736 (745)
Q Consensus 667 ~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~ 736 (745)
+.|.+ ....+....+..|.+|.++..|.|+|.|.|.+|.|+.++++..
T Consensus 794 -----tr~h~-----------------n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~ 841 (1281)
T KOG4222|consen 794 -----TRIHI-----------------NKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPI 841 (1281)
T ss_pred -----ccccc-----------------cccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeee
Confidence 01111 1111356677889999999999999999999999998877544
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.9e-44 Score=373.66 Aligned_cols=555 Identities=25% Similarity=0.402 Sum_probs=435.4
Q ss_pred CCeeEeeccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
+.-|-+.|.+..+..|+.++|.|.- .|.|.+.+.|.|||+++.-. .++.+ ..++.|.|.++...|.|.|.|.+.|.
T Consensus 131 rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l-isgG~LlIsnvrksD~GtY~CVatNm 209 (1281)
T KOG4222|consen 131 RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL-ISGGNLLISNVRKSDEGTYACVATNM 209 (1281)
T ss_pred chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE-ecCCcEEEeccccCCCceeeeeeccc
Confidence 4556778888889999999999988 78899999999999998722 22332 44668999999999999999999999
Q ss_pred CeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCC
Q psy11701 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189 (745)
Q Consensus 110 ~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~ 189 (745)
.|+..+...+|.|..+|.|...|.+..+..|..+.+.|++.|.|.+.+.|.+++..+... ...+...+.+|.|.+++.
T Consensus 210 vG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~--ry~i~~d~qtl~i~r~tp 287 (1281)
T KOG4222|consen 210 VGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRS--RYSILDDTQTLRIDRVTP 287 (1281)
T ss_pred ccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCcc--ceeeeeccccccccccCC
Confidence 999999999999999999999999999999999999999999999999999988777632 223344558999999999
Q ss_pred CCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEc---------c
Q psy11701 190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---------T 260 (745)
Q Consensus 190 ~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~ 260 (745)
.|.|.|.|.+.|..|....++.+.|+. +|.+...+....+..|..++|.|.+.++|.+.+.|.+.+... .
T Consensus 288 ~deg~y~C~a~n~vG~l~asa~ltV~a-pP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~ 366 (1281)
T KOG4222|consen 288 TDEGTYVCPAENLVGGLEASATLTVQA-PPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSS 366 (1281)
T ss_pred CcccceeeeccccccccccccceEEec-CcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCc
Confidence 999999999999999999999999986 999999999999999999999999999999999999987542 2
Q ss_pred CceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe-------ecceeecCCCcEEEecCCeEEEEEEEEe
Q psy11701 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK-------EHTHITDQPEDYEVEAGQSATFRCNAVS 333 (745)
Q Consensus 261 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~-------~~p~~~~~p~~~~~~~g~~~~l~C~~~~ 333 (745)
+.+..+...++|+|.+++..|.|.|.|...+..+.......+.+. .+|.+...+.+.....+..+.|.|.+.+
T Consensus 367 ~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg 446 (1281)
T KOG4222|consen 367 NGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATG 446 (1281)
T ss_pred CccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhC
Confidence 456666777899999999999999999988777765443333332 2344556666667777899999999999
Q ss_pred cCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEE-------------------
Q psy11701 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA------------------- 394 (745)
Q Consensus 334 ~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~------------------- 394 (745)
.|. +.+.|.+++..+.... .+..+...+.+.|..+...|.|.|+|.+.+..|....++
T Consensus 447 ~P~--p~i~wl~dg~~v~~~d-~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~ 523 (1281)
T KOG4222|consen 447 APT--PNISWLKDGCNVMNPD-SRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDP 523 (1281)
T ss_pred CCC--CCchhhhcccccccCC-cccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCCh
Confidence 987 7899999987765433 444445557899999999999999999987655432111
Q ss_pred -----------EEEEe----------------------------------------------------------------
Q psy11701 395 -----------TLTVQ---------------------------------------------------------------- 399 (745)
Q Consensus 395 -----------~l~v~---------------------------------------------------------------- 399 (745)
.+.+.
T Consensus 524 S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa 603 (1281)
T KOG4222|consen 524 SALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRA 603 (1281)
T ss_pred hhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeec
Confidence 00110
Q ss_pred ------------------ccCCCC---------------CCcee--EEeecCceeEEEEEeCCCCCcceeeeeEEEEEEe
Q psy11701 400 ------------------VPLEAP---------------SNFTL--IQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWT 444 (745)
Q Consensus 400 ------------------~pp~~P---------------~~~~~--~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~ 444 (745)
.+..+. ..++. .....++++.+.|... ..+....|.+|+|.|+.
T Consensus 604 ~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~-kq~~~~~i~g~~I~~r~ 682 (1281)
T KOG4222|consen 604 ENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKD-KQHGSQYIQGYRISYRS 682 (1281)
T ss_pred cccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeee-cccCcccccceEEEecc
Confidence 000000 00111 1136778999999984 45556679999999988
Q ss_pred ccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCC---CCCCCcceEEeCCCCCCC-CCCce---eEEEcCC
Q psy11701 445 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAY---NGPPSEIISFVTPEGVPG-TVQSL---EAIPLGS 517 (745)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G---~g~~S~~~~~~t~~~~P~-~p~~~---~~~~~~~ 517 (745)
.......+....+.......+.+.+|.+++.|+|.+.-+-..| .|.+|....+.|.+.+|+ +|.++ +...-..
T Consensus 683 ~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~ 762 (1281)
T KOG4222|consen 683 LGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNG 762 (1281)
T ss_pred CccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCC
Confidence 7775556665555456777889999999999999999887644 367777888889899887 45553 4444467
Q ss_pred ceEEEEeeCCCC--CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcc
Q psy11701 518 SAFYLKWVKPEQ--PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595 (745)
Q Consensus 518 ~~i~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~ 595 (745)
+++.|+|.+|.. .+|++.+|.|+.............+ . +....+.+|.+|.++..|+|+|.|.+.+|.|+.++
T Consensus 763 Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t----~-~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~ 837 (1281)
T KOG4222|consen 763 TAGSVSWAPPPADVQNGILQGYKIECSGGEKTRIHINKT----T-NARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSP 837 (1281)
T ss_pred ceeeEEecCCcccccCCcccceeEEeecCcccccccccc----c-cCCCCceEeccccccceEEEEEeeecCCccCCCCC
Confidence 889999998853 6899999999987654322222221 1 45668899999999999999999999999999887
Q ss_pred eeeec
Q psy11701 596 YLFYV 600 (745)
Q Consensus 596 ~~~~~ 600 (745)
.....
T Consensus 838 p~~~~ 842 (1281)
T KOG4222|consen 838 PQPIV 842 (1281)
T ss_pred Ceeee
Confidence 65433
No 7
>KOG4194|consensus
Probab=99.97 E-value=2.7e-30 Score=251.35 Aligned_cols=277 Identities=27% Similarity=0.430 Sum_probs=224.4
Q ss_pred CCCeeEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECCEecCCC-----CCeEe----------ccCCcEEEEccC
Q psy11701 32 APKQQYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDGVPINPS-----DRISQ----------GNYGKSLIIKHV 94 (745)
Q Consensus 32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~~~i~~~-----~~~~~----------~~~~~~L~i~~~ 94 (745)
+.+.+..+|.+.....|+.++|+|.+.+. .+.++.|.+|++....- .++.. ....+.|.+.||
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 34445688999999999999999999663 34499999988744321 11111 111246999999
Q ss_pred CCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEe-ccCCCCCC
Q psy11701 95 EFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP-ISQAPPNP 173 (745)
Q Consensus 95 ~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~-~~~~~~~~ 173 (745)
+..|+|.|+|.++|..|+..+..+.|+|...|.|+..|.+.++..|+.+.|.|.++|.|.|+|.|.|+|.. .+......
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR 661 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR 661 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999998865 33222111
Q ss_pred c-eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC-CeEE
Q psy11701 174 R-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVN 251 (745)
Q Consensus 174 ~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~-~~i~ 251 (745)
. ..-.+..+.|.||+.+|+|.|+|.|.|..|..+..+.+.|.+ .|.+..+.....+..|+.+.|.|.+.+.|. +.+.
T Consensus 662 l~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e-~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~ 740 (873)
T KOG4194|consen 662 LHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE-TPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLE 740 (873)
T ss_pred eeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec-CCcccccccceEEEecceEEEEEecCCCCCCcccc
Confidence 1 222567899999999999999999999999999999999986 677777888889999999999999999877 8999
Q ss_pred EeeCCEEccCce-EEEee-cCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecce
Q psy11701 252 WIHNQKELTGGR-YTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH 309 (745)
Q Consensus 252 W~~~~~~~~~~~-~~~~~-~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~ 309 (745)
|+|+++++.-.. ..... +.-|.+.+...+|+|.|+|...+..|.......+.+...+.
T Consensus 741 W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 741 WFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred ccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence 999988875332 22222 22478888889999999999999999877776666655443
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=9.7e-27 Score=229.75 Aligned_cols=245 Identities=27% Similarity=0.385 Sum_probs=179.5
Q ss_pred ceeEecCCcEEEEEEE-----eecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701 42 KEVALRNKKVELFCIF-----GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~-----~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 116 (745)
...+.+|+.+.|.|.+ .|.|.++++|+|+|... .+......+..|.|.++..+|+|.|+|.+.|..|... .
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~-~ 110 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDM-M 110 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceE-E
Confidence 3456789999999997 68888999999998532 2333233455688999999999999999999877655 5
Q ss_pred EEEEEEEe--cCeEEecCceeEeeCCCeEEEEEE-----EeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCC
Q psy11701 117 SIDLSVLA--APYFTVEPEFINAAEEETVTFECK-----ASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLR 188 (745)
Q Consensus 117 ~~~l~V~~--~p~~~~~~~~~~v~~G~~~~l~C~-----~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~ 188 (745)
++.|.|.. +|.+...+....+.+|+.+.|.|. ..+.|.+.++|++++. +. ..+.. ..++.|.|.+++
T Consensus 111 s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~----~~r~~~~~~~~L~i~~v~ 185 (326)
T PHA02785 111 SLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR----NKRLKQRTPGIITIEDVR 185 (326)
T ss_pred EEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC----CcceEecCCCeEEEeecC
Confidence 56777754 333433344455779999999997 2456888999998653 22 22332 235789999999
Q ss_pred CCCCEEEEEEEEeCCceEEE----EEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCC---CeEEEeeCCEEc
Q psy11701 189 KSDTGNYGCNATNSLGYVYK----DVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPK---PEVNWIHNQKEL 259 (745)
Q Consensus 189 ~~d~G~Y~C~~~~~~g~~~~----~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~ 259 (745)
.+|+|.|+|.+.|..|.... .+.|.|.. .+|.+ ..|....+..|+.++|.|.+.+.|. +.+.|++||..+
T Consensus 186 ~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i 264 (326)
T PHA02785 186 KNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYY 264 (326)
T ss_pred hhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEEC
Confidence 99999999999998776543 23444432 24443 4556777888999999999998876 379999999877
Q ss_pred cCc------eEEEe-----------ecCcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701 260 TGG------RYTIL-----------ETGDLKITDVAFADSGEYTCFARNKLGTA 296 (745)
Q Consensus 260 ~~~------~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~ 296 (745)
... ++... ..+.|.|.+++.+|.|.|+|.|.|..+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 265 EEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 421 22211 13469999999999999999999987443
No 9
>KOG4194|consensus
Probab=99.96 E-value=2.1e-27 Score=231.37 Aligned_cols=272 Identities=26% Similarity=0.447 Sum_probs=221.4
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEee--cCCCeEEEEeCCEeccCCCCC--Cce------------eecCceEEEccCC
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASG--LPEPEIHWVHNGKPISQAPPN--PRR------------KVGPNRITIENLR 188 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~g~~~~~~~~~--~~~------------~~~~~~L~i~~v~ 188 (745)
.|.+..+|.......|+.++|+|.+.+ ..+.++.|.++.+........ .++ ....+.|.+.+|+
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 567788888888899999999999966 344599999988744321111 000 0112479999999
Q ss_pred CCCCEEEEEEEEeCCceEEEE-EEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEE-cc---Cce
Q psy11701 189 KSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE-LT---GGR 263 (745)
Q Consensus 189 ~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~-~~---~~~ 263 (745)
..|.|.|+|+++|..|...+. +.+.|. ..|.|...|.+.++..|+.+.|.|.+.|.|.|.|.|.++|.. .+ ..|
T Consensus 583 ~td~grYQCVvtN~FGStysqk~KltV~-~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR 661 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQKAKLTVN-QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR 661 (873)
T ss_pred cccCceEEEEEecccCcchhheeEEEee-ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence 999999999999999987654 778876 489999999999999999999999999999999999998876 32 234
Q ss_pred EEE-eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEE
Q psy11701 264 YTI-LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342 (745)
Q Consensus 264 ~~~-~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~ 342 (745)
.++ ..+..+.|.++..+|.|.|+|.|.|..|..++.+.+.|.+.|.+..+..+..+..|+.+.|.|.+.+.|. ++.+.
T Consensus 662 l~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a-~pr~~ 740 (873)
T KOG4194|consen 662 LHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA-DPRLE 740 (873)
T ss_pred eeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCC-Ccccc
Confidence 444 3455799999999999999999999999999999999999998888888889999999999999998876 47899
Q ss_pred EeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 343 WLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399 (745)
Q Consensus 343 W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~ 399 (745)
|++++.++..... +.....+.-+.+......|.|.|+|...|..|.......+.+.
T Consensus 741 W~k~d~pil~t~r-h~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 741 WFKEDKPILITER-HTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred ccCCCCceEEeec-ccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 9999988875432 2233455578888888999999999999999977666655543
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=4.3e-25 Score=218.06 Aligned_cols=249 Identities=20% Similarity=0.315 Sum_probs=183.8
Q ss_pred EeeCCCeEEEEEEE-----eecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701 136 NAAEEETVTFECKA-----SGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKD 209 (745)
Q Consensus 136 ~v~~G~~~~l~C~~-----~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~ 209 (745)
...+|+.+.|.|.+ .|.|.++++|+|+|.... ..... ....|.|.++..+|+|.|+|.++|..|....+
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~-----~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND-----RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMS 111 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc-----eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence 45689999999987 678888999999985322 11122 23358899999999999999999999888888
Q ss_pred EEEEEeecC-CeeeeCCCceEEecCceEEEEEE-----EeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCE
Q psy11701 210 VYVNVLAHA-PEITEAPKDEYTVDGKTVVLTCR-----VFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSG 283 (745)
Q Consensus 210 ~~l~v~~~~-p~~~~~~~~~~v~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 283 (745)
+.|.|.... +.+...+....+.+|..+.|.|. ..+.+.+.+.|+++. .+...++....++.|.|.+++.+|.|
T Consensus 112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d~G 190 (326)
T PHA02785 112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKNDAG 190 (326)
T ss_pred EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhhCe
Confidence 888886533 33333344456778999999997 235678899998864 35556666666678999999999999
Q ss_pred EEEEEEEeCCceEE----EEEEEEEeec--ceeecCCCcEEEecCCeEEEEEEEEecCCC-CcEEEEeeCCeeccCCC--
Q psy11701 284 EYTCFARNKLGTAQ----GSGSLTVKEH--THITDQPEDYEVEAGQSATFRCNAVSDPSL-KLSIVWLRGSEPIDFES-- 354 (745)
Q Consensus 284 ~Y~C~~~n~~g~~~----~~~~l~v~~~--p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~-~~~i~W~~~~~~~~~~~-- 354 (745)
.|+|.+.|..|... ..+.|.|..+ |.....|....+..|+.+.|.|.+.+.|.+ .+.+.|++++..+....
T Consensus 191 ~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~ 270 (326)
T PHA02785 191 YYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDED 270 (326)
T ss_pred EEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCC
Confidence 99999999877643 2344555432 222345667777889999999999988753 25899999998775321
Q ss_pred -CCeEEEc-----------CCeEEEEecCCCCCCEEEEEEEEeCCceE
Q psy11701 355 -EPRFVQS-----------NDYSLTVTKSSELDSGQYTCRAQTELDFI 390 (745)
Q Consensus 355 -~~~~~~~-----------~~~~l~i~~~~~~~~g~y~c~a~n~~g~~ 390 (745)
..++... ....|.|.++..+|.|.|+|.|.|..|..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 271 GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 1122111 13579999999999999999999988543
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.84 E-value=1.5e-19 Score=166.50 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=115.2
Q ss_pred cceeEecCCcEEEEEEEeecC-----------CCeeEEEECCEec--C-CCCC--------eEeccCCcEEEEccCCCCC
Q psy11701 41 KKEVALRNKKVELFCIFGGTP-----------LPQTIWSKDGVPI--N-PSDR--------ISQGNYGKSLIIKHVEFSD 98 (745)
Q Consensus 41 ~~~~v~~G~~~~l~C~~~g~p-----------~~~v~W~~~~~~i--~-~~~~--------~~~~~~~~~L~i~~~~~~d 98 (745)
....+.+|+++.|.|.+.+.| .+.|+|+|++... . .+.+ ......+.+|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456789999999999987644 3489999987642 1 1111 1112235689999999999
Q ss_pred CEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee-----cCCCeEEEEeCCEeccCCCCCC
Q psy11701 99 QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-----LPEPEIHWVHNGKPISQAPPNP 173 (745)
Q Consensus 99 ~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~g~~~~~~~~~~ 173 (745)
+|.|+|.|.|..+... ..+.|.|..++ ....+.+|+++.|.|.+.+ .|.++++|+|+|+.+....
T Consensus 110 sG~Y~C~a~N~~~~~~-~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~--- 179 (227)
T PHA02826 110 EGIYICTISSGNICEE-STIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD--- 179 (227)
T ss_pred CEEEEEEEEECCcceE-EEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC---
Confidence 9999999999776544 66777774332 3446788999999999853 3578999999999987332
Q ss_pred cee--ecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 174 RRK--VGPNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 174 ~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
+.. ...+.|.|.+++.+|+|.|+|.|+...
T Consensus 180 r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 180 RIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 332 245689999999999999999999764
No 12
>KOG3515|consensus
Probab=99.81 E-value=4e-18 Score=176.56 Aligned_cols=299 Identities=20% Similarity=0.278 Sum_probs=196.2
Q ss_pred eEecCCcEEEEEEEeecC-CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 44 VALRNKKVELFCIFGGTP-LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 44 ~v~~G~~~~l~C~~~g~p-~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
-+..|++|.|.|.+.++| ...+.|++.++.+. .+... ....+|.......+.-+.|.|++.+..+........+.|
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v 94 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYAT-IADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDV 94 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccc-ccCCceeeecchhhhhhhhhhhhcccccCceecceeecc
Confidence 789999999999997775 55999999988776 22221 223467777777777889999999998887778888999
Q ss_pred EecCeEEecCceeEeeCCCeEEEEEEEe--ecCCCeEEEEeCCEeccCCCCC---------CceeecCceEEEccCCCCC
Q psy11701 123 LAAPYFTVEPEFINAAEEETVTFECKAS--GLPEPEIHWVHNGKPISQAPPN---------PRRKVGPNRITIENLRKSD 191 (745)
Q Consensus 123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~--~~p~~~v~W~~~g~~~~~~~~~---------~~~~~~~~~L~i~~v~~~d 191 (745)
..+|.-...........+..+.+.|.+. +.|.+.+.|..++......... .........|.+...+.++
T Consensus 95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~ 174 (741)
T KOG3515|consen 95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKAD 174 (741)
T ss_pred ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecC
Confidence 9888765555566677899999999664 4677899999988765432211 1111234578888899999
Q ss_pred CEEEEEEEEeC---CceEEEEEEEEEeecCCeeeeC--CCceEEecCceEEEEEEEe-ecCCCeEEEeeCCEEccCc-eE
Q psy11701 192 TGNYGCNATNS---LGYVYKDVYVNVLAHAPEITEA--PKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTGG-RY 264 (745)
Q Consensus 192 ~G~Y~C~~~~~---~g~~~~~~~l~v~~~~p~~~~~--~~~~~v~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~-~~ 264 (745)
.|.|+|.+.+. .+.......+.+......+... .......+|+.+.|.|.+. ++|.+.++|+++....... ..
T Consensus 175 ~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~ 254 (741)
T KOG3515|consen 175 NGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLL 254 (741)
T ss_pred CceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcc
Confidence 99999999984 3333344455554333333322 2224677899999999865 4588899999987655332 11
Q ss_pred EEeecC-----cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecce-eecCCCcEEEecCCeEEEEEEEEecCCCC
Q psy11701 265 TILETG-----DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH-ITDQPEDYEVEAGQSATFRCNAVSDPSLK 338 (745)
Q Consensus 265 ~~~~~~-----~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~-~~~~p~~~~~~~g~~~~l~C~~~~~~~~~ 338 (745)
....++ ++.+..-..++.-...|.+.|. ..+...+.+..++. .+..+....+..|+...+.|...+..+ .
T Consensus 255 ~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~---~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p-~ 330 (741)
T KOG3515|consen 255 SQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL---LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKP-P 330 (741)
T ss_pred cCCCCCCcccccccccccccchhhhhhccccCc---cccceeeecccccccccccCcccccccccccccceeccCCCC-c
Confidence 111111 2333222333344667999882 12222233333221 223333344778889999997776544 4
Q ss_pred cEEEEeeCCee
Q psy11701 339 LSIVWLRGSEP 349 (745)
Q Consensus 339 ~~i~W~~~~~~ 349 (745)
..+.|+++...
T Consensus 331 ~~i~w~~~~~~ 341 (741)
T KOG3515|consen 331 AHIAWYKDTKM 341 (741)
T ss_pred cceeeeccCcc
Confidence 78999985443
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.79 E-value=6.6e-18 Score=155.59 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=115.7
Q ss_pred ceeEeeCCCeEEEEEEEeecC-----------CCeEEEEeCCEec--cCC-CC-------CCceeecCceEEEccCCCCC
Q psy11701 133 EFINAAEEETVTFECKASGLP-----------EPEIHWVHNGKPI--SQA-PP-------NPRRKVGPNRITIENLRKSD 191 (745)
Q Consensus 133 ~~~~v~~G~~~~l~C~~~~~p-----------~~~v~W~~~g~~~--~~~-~~-------~~~~~~~~~~L~i~~v~~~d 191 (745)
....+.+|+++.|.|.+.+.+ .+.+.|+|++... ... .. ..+.....+.|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 455678999999999986643 3489999988652 110 00 01112235689999999999
Q ss_pred CEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEee-----cCCCeEEEeeCCEEccC-ceEE
Q psy11701 192 TGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-----APKPEVNWIHNQKELTG-GRYT 265 (745)
Q Consensus 192 ~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~-~~~~ 265 (745)
+|.|+|.|+|..+.....+.|.|.. + +....+.+|++++|.|.+.+ .|.+.++|++++..+.. .++.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~-~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~ 182 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDS-G------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ 182 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEec-C------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence 9999999999888877778887742 1 22446678999999999763 35689999999998853 3444
Q ss_pred Eee-cCcEEEcccCCCCCEEEEEEEEeCC
Q psy11701 266 ILE-TGDLKITDVAFADSGEYTCFARNKL 293 (745)
Q Consensus 266 ~~~-~~~l~i~~~~~~d~G~Y~C~~~n~~ 293 (745)
... .+.|.|.+++.+|+|.|+|.|....
T Consensus 183 ~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 183 LRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 433 3479999999999999999998754
No 14
>KOG0196|consensus
Probab=99.72 E-value=3.6e-16 Score=159.00 Aligned_cols=201 Identities=22% Similarity=0.355 Sum_probs=152.9
Q ss_pred EEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCcee----EEEE----ccCceeEE
Q psy11701 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR----ELIV----NKGESTTT 465 (745)
Q Consensus 394 ~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~----~~~~----~~~~~~~~ 465 (745)
.......||.+|.++... ++.+++.|.|.+|.. .++-.-..|.+.++.-......-. .+.. ....+...
T Consensus 324 ~~mpCT~PPSaP~nlis~--vn~Ts~~L~W~~P~d-~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V 400 (996)
T KOG0196|consen 324 PSMPCTRPPSAPRNLISN--VNGTSLILEWSPPAD-TGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSV 400 (996)
T ss_pred CCCCCCCCCCccceeeee--cccceEEEEecCCcc-cCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceE
Confidence 445567899999998775 789999999999643 333345668887765442211100 1111 13366788
Q ss_pred EecccccCcceeEEEEEecCCCCC----CCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEE
Q psy11701 466 EVDKFVPASKNFARVLAFNGAYNG----PPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKY 541 (745)
Q Consensus 466 ~i~~L~~~~~Y~~~V~a~n~~G~g----~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~ 541 (745)
++.+|.+.+.|.|.|.|+|....- .....+.++|....|+++..++....+.++|+|+|..|..++|.|..|.|+|
T Consensus 401 ~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky 480 (996)
T KOG0196|consen 401 TVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKY 480 (996)
T ss_pred EEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEE
Confidence 999999999999999999975442 2234678999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccC
Q psy11701 542 QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK 603 (745)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~ 603 (745)
.+...+... .. ......+..+|.+|+|++.|-|+|+|.+.+|.|+.|....+.+..
T Consensus 481 ~ek~~~e~~-~~-----~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~ 536 (996)
T KOG0196|consen 481 YEKDEDERS-YS-----TLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLP 536 (996)
T ss_pred eeccccccc-ee-----EEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence 987643211 11 114456889999999999999999999999999999877555433
No 15
>KOG0196|consensus
Probab=99.71 E-value=4.8e-16 Score=158.09 Aligned_cols=193 Identities=20% Similarity=0.304 Sum_probs=136.1
Q ss_pred CCCCCCCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcc-----cCCcccccccccCCCcceeeecCCCCC
Q psy11701 502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTK-----VGPLLERLPYISDPTTTSAKLAGLEPS 575 (745)
Q Consensus 502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~L~p~ 575 (745)
.+|++|.++... ++.+++.|.|.+|.+.|| .-..|.|.++.-.... .+..+...+....-+.++..+.+|.|.
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah 408 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH 408 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence 678999999877 799999999999998776 4567888876543221 111121111111335678999999999
Q ss_pred ccEEEEEEEEecCCC-CCCcceeeec---ccC-CC---CCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCC
Q psy11701 576 TKYRIHLAGYTKAGD-GAESKYLFYV---PFK-NP---DNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTG 647 (745)
Q Consensus 576 t~Y~~~V~a~n~~G~-g~~S~~~~~~---~~~-~~---~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~ 647 (745)
+.|+|.|.|.|.... ++.......+ +.. .+ ..+......++++.|+|..| +..||.|.-|.|+|.+...+
T Consensus 409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p--~~png~ildYEvky~ek~~~ 486 (996)
T KOG0196|consen 409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEP--DQPNGVILDYEVKYYEKDED 486 (996)
T ss_pred cccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCC--CCCCCcceeEEEEEeecccc
Confidence 999999999998643 3332221111 111 11 11233446789999999654 45788899999999876321
Q ss_pred CCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCccc
Q psy11701 648 EAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYN 727 (745)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~ 727 (745)
. ..|. ++....+...|.+|+|++.|.|+|+|.+.+|.
T Consensus 487 e-----------------------~~~~--------------------~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~ 523 (996)
T KOG0196|consen 487 E-----------------------RSYS--------------------TLKTKTTTATITGLKPGTVYVFQVRARTAAGY 523 (996)
T ss_pred c-----------------------ccee--------------------EEecccceEEeeccCCCcEEEEEEEEecccCC
Confidence 1 1122 22457788999999999999999999999999
Q ss_pred CCCCcceEEeCCC
Q psy11701 728 GPPSEIISFVTPE 740 (745)
Q Consensus 728 g~~s~~~~~~t~~ 740 (745)
|+.|.+.+|+|..
T Consensus 524 G~~S~~~~fqT~~ 536 (996)
T KOG0196|consen 524 GPYSGKHEFQTLP 536 (996)
T ss_pred CCCCCceeeeecC
Confidence 9999999999954
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.64 E-value=3.2e-15 Score=118.86 Aligned_cols=92 Identities=26% Similarity=0.339 Sum_probs=80.7
Q ss_pred eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
.|...+++..+.+|+.+.|.|.+.|.|.+++.|+|||++|..+.++... ...+.|+|.+++.+|+|.|+|.|.|..|.
T Consensus 2 ~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~ 81 (98)
T cd05762 2 QIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS 81 (98)
T ss_pred ceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc
Confidence 3557788999999999999999999999999999999999877666554 34568999999999999999999999999
Q ss_pred eEEEEEEEEEEecCe
Q psy11701 113 AKSYSIDLSVLAAPY 127 (745)
Q Consensus 113 ~~~~~~~l~V~~~p~ 127 (745)
.. .++.|.|...|.
T Consensus 82 ~~-~~~~l~V~~~P~ 95 (98)
T cd05762 82 RQ-AQVNLTVVDKPD 95 (98)
T ss_pred ee-EEEEEEEecCCC
Confidence 88 679999988763
No 17
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=3.7e-15 Score=116.18 Aligned_cols=87 Identities=32% Similarity=0.479 Sum_probs=74.4
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
|+.+...+.+..+.+|++++|.|.+.|.|.|.++|+|++.++....++. ..+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 78 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSGAVLKIFNIQPEDEGTYECEAENIKGK 78 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence 4456678889999999999999999999999999999998887654444 34568999999999999999999999998
Q ss_pred eEEEEEEEEE
Q psy11701 113 AKSYSIDLSV 122 (745)
Q Consensus 113 ~~~~~~~l~V 122 (745)
.. ..+.|.|
T Consensus 79 ~~-~~~~l~V 87 (88)
T cd05851 79 DK-HQARVYV 87 (88)
T ss_pred eE-EEEEEEE
Confidence 76 5677766
No 18
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=1e-14 Score=113.67 Aligned_cols=88 Identities=27% Similarity=0.378 Sum_probs=77.1
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+... .+....++.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT---AEISMSGAVLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC---CEEecCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 578889999999999999999999999999999999999877532 23444567899999999999999999999999
Q ss_pred eEEEEEEEEEe
Q psy11701 205 YVYKDVYVNVL 215 (745)
Q Consensus 205 ~~~~~~~l~v~ 215 (745)
.....+.|.|.
T Consensus 78 ~~~~~~~l~V~ 88 (88)
T cd05851 78 KDKHQARVYVQ 88 (88)
T ss_pred ceEEEEEEEEC
Confidence 99988888763
No 19
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.57 E-value=2.7e-14 Score=113.60 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=78.4
Q ss_pred CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--ecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--VGPNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
|.|...|.+..+..|+.+.|.|.+.|.|.+.+.|+|+|+.+...... ... ...+.|.|.++..+|+|.|+|.|.|..
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~-~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~ 79 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGI-KIENTENSSKLTITEGQQEHCGCYTLEVENKL 79 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcE-EEEecCCeeEEEECCCChhhCEEEEEEEEcCC
Confidence 56788899999999999999999999999999999999999743321 111 235789999999999999999999999
Q ss_pred ceEEEEEEEEEeec
Q psy11701 204 GYVYKDVYVNVLAH 217 (745)
Q Consensus 204 g~~~~~~~l~v~~~ 217 (745)
|.....+.|.|...
T Consensus 80 G~~~~~~~l~V~~~ 93 (98)
T cd05762 80 GSRQAQVNLTVVDK 93 (98)
T ss_pred CceeEEEEEEEecC
Confidence 99999999999864
No 20
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.57 E-value=3e-14 Score=111.35 Aligned_cols=84 Identities=29% Similarity=0.415 Sum_probs=73.8
Q ss_pred EeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701 37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116 (745)
Q Consensus 37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 116 (745)
...+.+..+.+|++++|.|.+.|. .|.+.|+|++..+.. .++.+...+++|+|.+++.+|+|.|+|.|.|..|...+.
T Consensus 7 ~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 7 NNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred ccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence 445567789999999999999999 899999999998864 456666667799999999999999999999999998888
Q ss_pred EEEEEE
Q psy11701 117 SIDLSV 122 (745)
Q Consensus 117 ~~~l~V 122 (745)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 888877
No 21
>KOG3515|consensus
Probab=99.55 E-value=1.4e-13 Score=143.14 Aligned_cols=412 Identities=17% Similarity=0.142 Sum_probs=264.1
Q ss_pred cccCCCCCeeEeeccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeE-ec-----cCCcEEEEccCCCCCC
Q psy11701 27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRIS-QG-----NYGKSLIIKHVEFSDQ 99 (745)
Q Consensus 27 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~-~~-----~~~~~L~i~~~~~~d~ 99 (745)
.+.+.+|....+.+....+..|+...+.|.. .++|...+.|+++.+......... -+ .....+........|.
T Consensus 294 tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~ 373 (741)
T KOG3515|consen 294 TAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDG 373 (741)
T ss_pred eecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcC
Confidence 3445677777788888889999999999998 445777999999766554322211 11 1112466677788999
Q ss_pred EEEEEEEEeCCeee-EEEEEEEEEEecCeEEec-CceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCcee
Q psy11701 100 GSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVE-PEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRK 176 (745)
Q Consensus 100 G~Y~C~~~~~~g~~-~~~~~~l~V~~~p~~~~~-~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~~~ 176 (745)
|.|+|.+.+..... .+..+.+.+..+|.+... .......+++.....-.+.+. +.+.+.|.+.+..+..........
T Consensus 374 g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v 453 (741)
T KOG3515|consen 374 GQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRV 453 (741)
T ss_pred ceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEe
Confidence 99999998765322 234566777777766544 333444555554444333354 445999999988887544333333
Q ss_pred ecCc-eEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC--eEEEe
Q psy11701 177 VGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP--EVNWI 253 (745)
Q Consensus 177 ~~~~-~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~--~i~W~ 253 (745)
.... .+.+-++.+.|.|.|.|.+.|..|.......+.+.. .|.+...........|.++.+.|.....+.- .+.|.
T Consensus 454 ~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~-sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~ 532 (741)
T KOG3515|consen 454 GAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT-SPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEP 532 (741)
T ss_pred eccccccccceeeeccCCcceeeeccCCCceeeEEeecccc-CCcccccccccccCCCCcccceeeccccccchhhhccc
Confidence 3333 334677999999999999999999888777766665 3444333334445567779999998776543 58899
Q ss_pred eCCEEccCc------eEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEE-ec-CCeE
Q psy11701 254 HNQKELTGG------RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV-EA-GQSA 325 (745)
Q Consensus 254 ~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~-~~-g~~~ 325 (745)
+.+....+. .......+.+.+......-++.|.|.+.+..-.......+.+..++.....+..... .. ...+
T Consensus 533 r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~a 612 (741)
T KOG3515|consen 533 RSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNA 612 (741)
T ss_pred ccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCceeeeccCcccc
Confidence 887655321 222334456777777767789999999882222334444555444444333333332 22 2378
Q ss_pred EEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEE-----cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEec
Q psy11701 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ-----SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400 (745)
Q Consensus 326 ~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~ 400 (745)
+..|.+.+.+. ..+.|.+...........+... .+..+..+.+....+.|...|.+.|.+|....+..+.-..
T Consensus 613 s~~~~a~~~~~--~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t 690 (741)
T KOG3515|consen 613 SDDCVASGVPS--TSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGT 690 (741)
T ss_pred cccceeccccc--ceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcceeeecccCCCccccceecCCc
Confidence 99997777775 7899998876633211111110 1112233333333444559999999999988887777777
Q ss_pred cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEec
Q psy11701 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTE 445 (745)
Q Consensus 401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~ 445 (745)
.+..|.|+.+.. .....+.|.|.+.- -.|-...|.+.|...
T Consensus 691 ~~~~~~n~~~~~-~~~~~i~l~~~p~f---dgg~~q~f~~~~~~~ 731 (741)
T KOG3515|consen 691 ASVGPINLTYDN-LTYSTISLEWMPGF---DGGLQQRFFLKYYDL 731 (741)
T ss_pred CCCCccceEeee-eeeeeeceeeeecc---ccccccceeeehhhc
Confidence 788999999877 88889999999853 233445566666443
No 22
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.55 E-value=8e-14 Score=108.52 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=74.0
Q ss_pred eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
..+.+++..+.+|+++.|.|.+.|.|. .++|++ ++.++....++.+...+ ..|.|.++..+|+|.|+|.|.|..|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 356788889999999999999999998 999998 57788777777765444 48999999999999999999999998
Q ss_pred eEEEEEEEEE
Q psy11701 113 AKSYSIDLSV 122 (745)
Q Consensus 113 ~~~~~~~l~V 122 (745)
...+++.|.|
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 8778888776
No 23
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.54 E-value=9.2e-14 Score=109.93 Aligned_cols=87 Identities=25% Similarity=0.460 Sum_probs=74.0
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEecc--CCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGV 110 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (745)
|..++..|++..+.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+.. ..++|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 5566688899999999999999999999999999999999998766665543 34689999999999999999999999
Q ss_pred eeeEEEEEEE
Q psy11701 111 GEAKSYSIDL 120 (745)
Q Consensus 111 g~~~~~~~~l 120 (745)
|... ..+.|
T Consensus 83 G~~~-~~~~l 91 (92)
T cd05747 83 GKQE-AQFTL 91 (92)
T ss_pred CCEe-EEEEe
Confidence 8766 44444
No 24
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.54 E-value=6.6e-14 Score=111.19 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=68.1
Q ss_pred cceeEecCCcEEEEEEEee-cCCCeeEEEECCEecCCCCCeE-ecc------CCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 41 KKEVALRNKKVELFCIFGG-TPLPQTIWSKDGVPINPSDRIS-QGN------YGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 41 ~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~-~~~------~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
..+.+.+|+++.|.|.+.| .|+|.+.|+|||.+|....... ... .++.|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 5678999999999999999 8999999999999998544422 211 2468999999999999999999999997
Q ss_pred eEEEEEEEEEE
Q psy11701 113 AKSYSIDLSVL 123 (745)
Q Consensus 113 ~~~~~~~l~V~ 123 (745)
.. ..+.|.|.
T Consensus 91 ~~-~t~~L~V~ 100 (101)
T cd04975 91 KS-LTFELYVN 100 (101)
T ss_pred EE-EEEEEEEE
Confidence 66 66777764
No 25
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=1.1e-13 Score=108.55 Aligned_cols=87 Identities=33% Similarity=0.509 Sum_probs=73.3
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
|..+...|.+..+.+|++++|.|.+.|.|.|.++|+|++..+....... ..+..|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 78 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSGAVLKIPNIQFEDEGTYECEAENIKGK 78 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence 5667788899999999999999999999999999999887765444333 34568999999999999999999999998
Q ss_pred eEEEEEEEEE
Q psy11701 113 AKSYSIDLSV 122 (745)
Q Consensus 113 ~~~~~~~l~V 122 (745)
.. ..+.|.|
T Consensus 79 ~~-~~~~l~V 87 (88)
T cd04968 79 DT-HQGRIYV 87 (88)
T ss_pred EE-EEEEEEE
Confidence 66 5566665
No 26
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.53 E-value=9.2e-14 Score=109.81 Aligned_cols=82 Identities=28% Similarity=0.372 Sum_probs=68.5
Q ss_pred ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccC---CcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116 (745)
Q Consensus 40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 116 (745)
|+...+.+|+++.|.|.+.|.|.|++.|+|++.++....++.+... ..+|.|.+++.+|+|.|+|.|.|..|... .
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET-V 86 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce-E
Confidence 4567899999999999999999999999999999987776654322 34799999999999999999999998876 4
Q ss_pred EEEEEE
Q psy11701 117 SIDLSV 122 (745)
Q Consensus 117 ~~~l~V 122 (745)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 455543
No 27
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.53 E-value=1.1e-13 Score=104.90 Aligned_cols=76 Identities=36% Similarity=0.757 Sum_probs=66.8
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
|+++.|.|.+.|.|.|+++|+|+|..+.......+.....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 7899999999999999999999999887554444555667899999999999999999999999999988888773
No 28
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.53 E-value=7.1e-14 Score=105.31 Aligned_cols=74 Identities=30% Similarity=0.528 Sum_probs=63.2
Q ss_pred cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 47 RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 47 ~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
||+++.|.|.+.|.|.|.+.|+|++..+....+.... .+++|.|.+++.+|.|.|+|.|.|..|... ..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL-SSGTLRISRVALHDQGQYECQAVNIVGSQR-TVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc-cCCeEEEeeCCHHhCEEEEEEEEeCCCcee-EEEEEeC
Confidence 6999999999999999999999999998866555443 345899999999999999999999998877 5566654
No 29
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.52 E-value=1.6e-13 Score=109.62 Aligned_cols=84 Identities=33% Similarity=0.541 Sum_probs=72.0
Q ss_pred ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI 118 (745)
Q Consensus 40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 118 (745)
+.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+... .++.....++.|.|.+++.+|.|.|+|.|.|..|... ..+
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~ 88 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE-AEI 88 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEE-EEE
Confidence 34567899999999999999999999999999999765 4566556667899999999999999999999999866 667
Q ss_pred EEEEEe
Q psy11701 119 DLSVLA 124 (745)
Q Consensus 119 ~l~V~~ 124 (745)
.|.|..
T Consensus 89 ~L~V~~ 94 (95)
T cd05730 89 HLKVFA 94 (95)
T ss_pred EEEEEe
Confidence 777753
No 30
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.52 E-value=9.1e-14 Score=107.85 Aligned_cols=84 Identities=27% Similarity=0.415 Sum_probs=72.1
Q ss_pred eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701 36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115 (745)
Q Consensus 36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 115 (745)
|+..|.+..+.+|+++.|.|.+.|.|.|.+.|+|++.++....++.. .++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~- 78 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAGDLRITKLSLSDSGMYQCVAENKHGTIY- 78 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCCEEEEeeCCHHHCEEEEEEEECCCCeEE-
Confidence 35678889999999999999999999999999999999987666654 345899999999999999999999998866
Q ss_pred EEEEEEE
Q psy11701 116 YSIDLSV 122 (745)
Q Consensus 116 ~~~~l~V 122 (745)
.++.|.|
T Consensus 79 ~~~~l~V 85 (85)
T cd05728 79 ASAELAV 85 (85)
T ss_pred EEEEEEC
Confidence 5566553
No 31
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=8.9e-14 Score=103.47 Aligned_cols=73 Identities=34% Similarity=0.422 Sum_probs=63.5
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|+++.|.|.+.|.|.|+|.|+|++..+..+.++.+.. +++|.|.+++.+|.|.|+|.|.|..|... .++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD-DGSLEILNITKLDEGSYTCFAENNRGKAN-STGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC-CCEEEECcCChhHCEEEEEEEECCCCcee-EEEEEEC
Confidence 7899999999999999999999999888777877644 34799999999999999999999998887 4566553
No 32
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.52 E-value=1.4e-13 Score=108.36 Aligned_cols=87 Identities=21% Similarity=0.387 Sum_probs=69.6
Q ss_pred eEeeccceeEecCCcEEEEEEEeecCC-CeeEEEE-CCEecCC-CCCeEecc---CCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701 36 QYVTRKKEVALRNKKVELFCIFGGTPL-PQTIWSK-DGVPINP-SDRISQGN---YGKSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~-~~v~W~~-~~~~i~~-~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
+.+.|++..+.+|++++|.|.+.|.|. |++.|++ +++.+.. ..++.... ..++|.|.+++.+|+|.|+|.|.|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 346778888999999999999999995 6999998 8877765 34544322 2368999999999999999999999
Q ss_pred CeeeEEEEEEEEE
Q psy11701 110 VGEAKSYSIDLSV 122 (745)
Q Consensus 110 ~g~~~~~~~~l~V 122 (745)
.|...+.++.|.|
T Consensus 83 ~~g~~~~s~~l~v 95 (96)
T cd05865 83 DEGESEATVNVKI 95 (96)
T ss_pred CCCcEEEEEEEEE
Confidence 7555547777776
No 33
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.51 E-value=1.2e-13 Score=103.07 Aligned_cols=71 Identities=34% Similarity=0.528 Sum_probs=58.8
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccC--C-cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNY--G-KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~--~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|.|.|.+.|.|.|.|.|+|++.+|.. ..++.+... + .+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVAT-CHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEE-EEEEEeC
Confidence 57999999999999999999999974 356665322 2 2799999999999999999999999887 4566654
No 34
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.51 E-value=1.9e-13 Score=107.93 Aligned_cols=86 Identities=26% Similarity=0.396 Sum_probs=67.6
Q ss_pred eeEeeccceeEe---cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCC-CCCCEEEEEEEEeCC
Q psy11701 35 QQYVTRKKEVAL---RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVE-FSDQGSYTCEVSNGV 110 (745)
Q Consensus 35 ~~~~~~~~~~v~---~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~ 110 (745)
.|+..|.++.+. +|++++|.|.+.|.|.|+|+|+|||.+|...........++.|.|.++. .+|.|.|+|.|.|..
T Consensus 3 ~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~ 82 (94)
T cd05848 3 VFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSI 82 (94)
T ss_pred eeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCC
Confidence 345667776654 4789999999999999999999999999754333322334579999885 699999999999999
Q ss_pred eeeEEEEEEE
Q psy11701 111 GEAKSYSIDL 120 (745)
Q Consensus 111 g~~~~~~~~l 120 (745)
|...++.+.|
T Consensus 83 G~~~S~~~~l 92 (94)
T cd05848 83 GSILSREALL 92 (94)
T ss_pred CeEEeccEEE
Confidence 9988766654
No 35
>KOG4258|consensus
Probab=99.51 E-value=7.5e-13 Score=135.70 Aligned_cols=279 Identities=21% Similarity=0.265 Sum_probs=180.4
Q ss_pred ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccC------------CCCceeEEEEcc-------CceeEEEecccccCc
Q psy11701 414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKD------------GEGSIRELIVNK-------GESTTTEVDKFVPAS 474 (745)
Q Consensus 414 ~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~------------~~~~~~~~~~~~-------~~~~~~~i~~L~~~~ 474 (745)
.+..++.++|..-.+.+ --..++|.++|+.... +..+|....+.. ....-+.+.+|+|+|
T Consensus 499 ~~~dsi~lrW~~~~~~d-~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~T 577 (1025)
T KOG4258|consen 499 TSADSILLRWERYQPPD-MRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPWT 577 (1025)
T ss_pred eecceeEEEecccCCcc-hhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCccc
Confidence 67889999998754332 2246789988866432 122333333311 122357889999999
Q ss_pred ceeEEEEEecC--CCCC--CCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCc---
Q psy11701 475 KNFARVLAFNG--AYNG--PPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT--- 547 (745)
Q Consensus 475 ~Y~~~V~a~n~--~G~g--~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~--- 547 (745)
.|.+-|++... .+.. ..|...-++|..+.|++|..+-..+.+++.|.|.|.||..++|.|+.|.|.|+....+
T Consensus 578 qYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~~~~~yl 657 (1025)
T KOG4258|consen 578 QYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQAEDGYL 657 (1025)
T ss_pred eeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEeccCCchH
Confidence 99999998832 2222 3456677899999999999988888888899999999999999999999999764221
Q ss_pred ---------------------ccCCcc-----------------c-----------------------------------
Q psy11701 548 ---------------------KVGPLL-----------------E----------------------------------- 554 (745)
Q Consensus 548 ---------------------~~~~~~-----------------~----------------------------------- 554 (745)
.+.+.. +
T Consensus 658 ~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~vpr~~~~kr 737 (1025)
T KOG4258|consen 658 EQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIFVPRRPDRKR 737 (1025)
T ss_pred HHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccceeeecccCcccc
Confidence 000000 0
Q ss_pred ----------------------------------ccccccCCCcceeeecCCCCCccEEEEEEEEecCCC----CCCcce
Q psy11701 555 ----------------------------------RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGD----GAESKY 596 (745)
Q Consensus 555 ----------------------------------~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~----g~~S~~ 596 (745)
......+.+..++.|.+|+.++.|.+.+.|.|.++. |..+-.
T Consensus 738 k~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v 817 (1025)
T KOG4258|consen 738 KSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPKCGCSHAAFV 817 (1025)
T ss_pred cccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccccccccchhhhh
Confidence 000000122346778899999999999999999876 332111
Q ss_pred eeecccC--CCCCCCC-----CCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCC
Q psy11701 597 LFYVPFK--NPDNVEG-----RGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQP 669 (745)
Q Consensus 597 ~~~~~~~--~~~~~~~-----~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (745)
+..+.. ...+++. .....+.+.++|.+| .+.||.|..|.|+|+...+... ...+.
T Consensus 818 -~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP--~~pNGli~~Y~Vk~r~~~~et~--v~cvs------------- 879 (1025)
T KOG4258|consen 818 -FARTMPTMGADDIPGPVTWECHIEMNSVILRWLEP--KEPNGLILNYEVKYRRNGDETH--VECVS------------- 879 (1025)
T ss_pred -hhccccccccccCCCceeEecccCcceEEEecCCC--CCCCccEEEEEEEEeeccCcch--hhhhh-------------
Confidence 111110 0111111 112558889999654 4689999999999986533211 11010
Q ss_pred CcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEe
Q psy11701 670 TFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV 737 (745)
Q Consensus 670 ~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~ 737 (745)
.+| -.......+.+|.|| .|.++|+|..-+|+|+|.+++-|-
T Consensus 880 --R~~-----------------------~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~ 921 (1025)
T KOG4258|consen 880 --RMD-----------------------YAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFY 921 (1025)
T ss_pred --hhh-----------------------hhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceE
Confidence 000 012334567789888 799999999999999999887654
No 36
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.50 E-value=3.1e-13 Score=104.61 Aligned_cols=81 Identities=28% Similarity=0.432 Sum_probs=67.7
Q ss_pred cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEecc--CCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEE
Q psy11701 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS 117 (745)
Q Consensus 41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~ 117 (745)
..+.+.+|+.+.|.|.+.|.|.|.+.|+|++.+|... .++.+.. ..+.|.|.+++.+|+|.|+|.|.|..|+.. ..
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~-~~ 81 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDH-AS 81 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEE-EE
Confidence 3567899999999999999999999999999999753 4555433 346899999999999999999999999866 55
Q ss_pred EEEEE
Q psy11701 118 IDLSV 122 (745)
Q Consensus 118 ~~l~V 122 (745)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05894 82 LFVKV 86 (86)
T ss_pred EEEEC
Confidence 66554
No 37
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.50 E-value=2.5e-13 Score=106.90 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=70.1
Q ss_pred eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe--ccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701 36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ--GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113 (745)
Q Consensus 36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 113 (745)
++..|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+........ ......|.|.+++.+|.|.|+|.|.|..|..
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 34566777899999999999999999999999999998875544322 2334589999999999999999999999986
Q ss_pred EEEEEEEEE
Q psy11701 114 KSYSIDLSV 122 (745)
Q Consensus 114 ~~~~~~l~V 122 (745)
. ..+.|.|
T Consensus 83 ~-~~~~L~v 90 (90)
T cd04972 83 N-VSVQVTV 90 (90)
T ss_pred e-EEEEEeC
Confidence 6 5566543
No 38
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.50 E-value=3.8e-13 Score=106.39 Aligned_cols=85 Identities=24% Similarity=0.317 Sum_probs=68.6
Q ss_pred eeEeeccceeEecC---CcEEEEEEEeecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCC-CCCCEEEEEEEEe
Q psy11701 35 QQYVTRKKEVALRN---KKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVE-FSDQGSYTCEVSN 108 (745)
Q Consensus 35 ~~~~~~~~~~v~~G---~~~~l~C~~~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~ 108 (745)
.|...|+++.+.+| ++++|.|.+.|.|.|+++|++||.+|... .++.+ .++.|.|.++. .+|.|.|+|.|.|
T Consensus 3 ~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 3 VFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL--VAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred eeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE--ECCeEEEccCCccCcCEEEEEEEEc
Confidence 45567888877776 57999999999999999999999998643 33443 34579998865 6999999999999
Q ss_pred CCeeeEEEEEEEE
Q psy11701 109 GVGEAKSYSIDLS 121 (745)
Q Consensus 109 ~~g~~~~~~~~l~ 121 (745)
..|...+..+.|.
T Consensus 81 ~~G~~~s~~a~l~ 93 (94)
T cd05850 81 RCGTVVSREANLR 93 (94)
T ss_pred CcCcEEEEEEEEe
Confidence 9999887776664
No 39
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.50 E-value=2.6e-13 Score=102.43 Aligned_cols=76 Identities=41% Similarity=0.817 Sum_probs=64.8
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
|+++.|.|.+.|.|.|+|+|+|+|+.+.............+.|.|.+++..|+|.|+|.|.|..|....++.|.|+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 7889999999999999999999999986433222334455689999999999999999999999999999988873
No 40
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.50 E-value=2.1e-13 Score=103.27 Aligned_cols=78 Identities=21% Similarity=0.387 Sum_probs=65.1
Q ss_pred EeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701 37 YVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115 (745)
Q Consensus 37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 115 (745)
...|+++.+.+|+++.|.|.+.|.|.| +|+|+|||.+|... ....++.|.|..+ .|.|.|.|.|.|..|...+
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 457888999999999999999999999 79999999998641 1233468999887 4789999999999998887
Q ss_pred EEEEE
Q psy11701 116 YSIDL 120 (745)
Q Consensus 116 ~~~~l 120 (745)
..+.|
T Consensus 76 ~~a~~ 80 (81)
T cd05749 76 RTGTV 80 (81)
T ss_pred eeEEe
Confidence 66655
No 41
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.49 E-value=5.4e-13 Score=104.66 Aligned_cols=87 Identities=26% Similarity=0.409 Sum_probs=73.9
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
|+.+...|....+.+|+.+.|.|.+.|.|.+.++|+|++..+... .......+.|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS---AEISMSGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc---cEEEEeCCEEEECCCCcccCEEEEEEEEECCC
Confidence 455677788888999999999999999999999999988765432 22335678999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy11701 205 YVYKDVYVNV 214 (745)
Q Consensus 205 ~~~~~~~l~v 214 (745)
.....+.|.|
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd04968 78 KDTHQGRIYV 87 (88)
T ss_pred cEEEEEEEEE
Confidence 9888888876
No 42
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.49 E-value=2.9e-13 Score=105.00 Aligned_cols=84 Identities=32% Similarity=0.582 Sum_probs=73.0
Q ss_pred EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207 (745)
Q Consensus 128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~ 207 (745)
|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|+|..+.. ..+....++.|.|.++..+|+|.|+|.|.|..|...
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~---~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS---ENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY 78 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC---CCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence 44567888999999999999999999999999999998863 234555678999999999999999999999999988
Q ss_pred EEEEEEE
Q psy11701 208 KDVYVNV 214 (745)
Q Consensus 208 ~~~~l~v 214 (745)
.++.|.|
T Consensus 79 ~~~~l~V 85 (85)
T cd05728 79 ASAELAV 85 (85)
T ss_pred EEEEEEC
Confidence 8887764
No 43
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.48 E-value=4.6e-13 Score=106.37 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=68.0
Q ss_pred ceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceee------cCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701 133 EFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 133 ~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
....+.+|+++.|.|.+.| .|+|.+.|+|||.++........... ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4667899999999999999 89999999999999974322111111 1368999999999999999999999999
Q ss_pred EEEEEEEEEe
Q psy11701 206 VYKDVYVNVL 215 (745)
Q Consensus 206 ~~~~~~l~v~ 215 (745)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888888774
No 44
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.48 E-value=6e-13 Score=105.53 Aligned_cols=87 Identities=36% Similarity=0.536 Sum_probs=74.9
Q ss_pred eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
.|...+.+..+.+|++++|.|.+.|.|.+++.|++++..|....++.+. ....+|.|.+++.+|+|.|+|.|.+..|.
T Consensus 2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~ 81 (90)
T PF07679_consen 2 VFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE 81 (90)
T ss_dssp EEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE
T ss_pred EEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE
Confidence 3567779999999999999999999999999999999999987776554 34568999999999999999999999887
Q ss_pred eEEEEEEEEE
Q psy11701 113 AKSYSIDLSV 122 (745)
Q Consensus 113 ~~~~~~~l~V 122 (745)
.. ..+.|.|
T Consensus 82 ~~-~~~~l~V 90 (90)
T PF07679_consen 82 AT-ASVNLTV 90 (90)
T ss_dssp EE-EEEEEEE
T ss_pred EE-EEEEEEC
Confidence 77 5576665
No 45
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.47 E-value=4e-13 Score=105.34 Aligned_cols=83 Identities=33% Similarity=0.523 Sum_probs=70.3
Q ss_pred eccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCC-CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701 39 TRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINP-SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 116 (745)
.|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+.. ..++.... +++|.|.+++.+|+|.|+|.+.|..|...+.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-DGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-CCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 5678889999999999998 7899999999999999876 34454433 5689999999999999999999999988777
Q ss_pred EEEEEE
Q psy11701 117 SIDLSV 122 (745)
Q Consensus 117 ~~~l~V 122 (745)
.+.|.|
T Consensus 81 ~~~l~V 86 (86)
T cd05724 81 AARLSV 86 (86)
T ss_pred eEEEEC
Confidence 776654
No 46
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.47 E-value=5e-13 Score=101.27 Aligned_cols=72 Identities=32% Similarity=0.551 Sum_probs=60.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCCC---CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|++++|.|.+.|.|.|+++|+|+|.++.... ++. ...++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH--VSSGALILTDVQPSDTAVYQCEARNRHGNLL-ANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE--eeCCEEEECCCChhhCEEEEEEEECCCCeEE-EEEEEEE
Confidence 7899999999999999999999999987532 333 2346899999999999999999999999876 5566665
No 47
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.47 E-value=3.5e-13 Score=100.77 Aligned_cols=71 Identities=31% Similarity=0.513 Sum_probs=59.0
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccCC---cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNYG---KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|+|.|.+.|.|.|++.|+|++.+|.. ..++.+...+ .+|.|.+++.+|+|.|+|.|.|..|... .++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVS-CTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE-EEEEEeC
Confidence 57999999999999999999999875 3566664432 2699999999999999999999999887 5566654
No 48
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.46 E-value=4.5e-13 Score=96.76 Aligned_cols=65 Identities=31% Similarity=0.390 Sum_probs=54.5
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
+.|.|.+.|.|.|.++|+|||++|... ..++.|.|.++..+|+|.|+|.|.|..|... +++.+.|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLE-KRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEE-EEEEEEE
Confidence 479999999999999999999999632 2356899999999999999999999988655 4455544
No 49
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.46 E-value=6.8e-13 Score=104.22 Aligned_cols=86 Identities=29% Similarity=0.465 Sum_probs=68.4
Q ss_pred CeeEeeccceeEecCC---cEEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccCCcEEEEccCC-CCCCEEEEEEEEe
Q psy11701 34 KQQYVTRKKEVALRNK---KVELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNYGKSLIIKHVE-FSDQGSYTCEVSN 108 (745)
Q Consensus 34 ~~~~~~~~~~~v~~G~---~~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~ 108 (745)
+.|..+|.+..+.++. .+.|.|.+.|.|.|+++|+|++.++.. ..++.+ .++.|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~--~~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM--VGGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE--ECCEEEECcCCcCCCCEEEEEEEEe
Confidence 3455667777666544 899999999999999999999998864 345543 34689999985 6999999999999
Q ss_pred CCeeeEEEEEEEE
Q psy11701 109 GVGEAKSYSIDLS 121 (745)
Q Consensus 109 ~~g~~~~~~~~l~ 121 (745)
..|...+..+.|.
T Consensus 80 ~~G~~~s~~a~l~ 92 (93)
T cd05849 80 IYGKVRSREATLS 92 (93)
T ss_pred CcceEEEccEEEe
Confidence 9999887776663
No 50
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.46 E-value=5e-13 Score=99.43 Aligned_cols=72 Identities=26% Similarity=0.494 Sum_probs=62.4
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
|+++.|.|.+.|.|.+.++|+|++..+... .++.. .++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~---~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN---SRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccC---CCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 789999999999999999999999877532 34433 5689999999999999999999999999998888764
No 51
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.46 E-value=4.4e-13 Score=100.95 Aligned_cols=74 Identities=30% Similarity=0.557 Sum_probs=63.3
Q ss_pred CCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 139 ~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
+|+++.|.|.+.|.|.|.++|+|+|..+.... ......++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDR--RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCC--CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 69999999999999999999999999886421 122335679999999999999999999999999888887764
No 52
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.46 E-value=7.2e-13 Score=105.82 Aligned_cols=91 Identities=27% Similarity=0.496 Sum_probs=72.0
Q ss_pred CeEEec--CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 126 PYFTVE--PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 126 p~~~~~--~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
|.+... +....+..|+++.|.|.+.|.|.+.+.|+++|..+.............+.|.|.+++.+|+|.|+|.|.|..
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA 81 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence 444443 344578899999999999999999999999999887542111122234579999999999999999999999
Q ss_pred ceEEEEEEEEEee
Q psy11701 204 GYVYKDVYVNVLA 216 (745)
Q Consensus 204 g~~~~~~~l~v~~ 216 (745)
|.....+.|.|..
T Consensus 82 G~~~~~~~L~V~~ 94 (95)
T cd05730 82 GEQEAEIHLKVFA 94 (95)
T ss_pred CeEEEEEEEEEEe
Confidence 9999888888863
No 53
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=6.2e-13 Score=102.64 Aligned_cols=77 Identities=27% Similarity=0.419 Sum_probs=62.8
Q ss_pred CcEEEEEEEeecCCC--eeEEEECCEecCCC---CCeE---eccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 49 KKVELFCIFGGTPLP--QTIWSKDGVPINPS---DRIS---QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 49 ~~~~l~C~~~g~p~~--~v~W~~~~~~i~~~---~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
+.++|.|.+.|.|.| ++.|+|||.+|... .++. .....++|.|.+++.+|+|.|+|.|.|..|... .++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~-~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS-ASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE-EEEEE
Confidence 478999999999987 68999999998642 2332 222346899999999999999999999998777 77899
Q ss_pred EEEecC
Q psy11701 121 SVLAAP 126 (745)
Q Consensus 121 ~V~~~p 126 (745)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998766
No 54
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.46 E-value=6.8e-13 Score=104.93 Aligned_cols=88 Identities=23% Similarity=0.427 Sum_probs=73.3
Q ss_pred ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee--cCceEEEccCCCCCCEEEEEEEEe
Q psy11701 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--GPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
.+|.|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|+|..+...... .... ..+.|.|.++..+|+|.|+|.|.|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRH-QITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcE-EEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 3688888899999999999999999999999999999999987643211 1111 246899999999999999999999
Q ss_pred CCceEEEEEEE
Q psy11701 202 SLGYVYKDVYV 212 (745)
Q Consensus 202 ~~g~~~~~~~l 212 (745)
..|.....+.|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99988777655
No 55
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.46 E-value=9.1e-13 Score=104.96 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=67.4
Q ss_pred ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--------cCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701 42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--------NYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 113 (745)
...+..|+.+.|.|.+.|.|.|.+.|+|||.+|..+.+.... ...++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 567889999999999999999999999999999865543221 124689999999999999999999998886
Q ss_pred EEEEEEEEEE
Q psy11701 114 KSYSIDLSVL 123 (745)
Q Consensus 114 ~~~~~~l~V~ 123 (745)
. .++.|.|.
T Consensus 92 ~-~t~~l~V~ 100 (101)
T cd05859 92 S-YTFALQIQ 100 (101)
T ss_pred E-EEEEEEEE
Confidence 6 66777664
No 56
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.45 E-value=9.3e-13 Score=103.66 Aligned_cols=82 Identities=29% Similarity=0.405 Sum_probs=67.5
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cC-CcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NY-GKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~-~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 115 (745)
.|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+....++... .. ..+|.|.+++.+|+|.|+|.|.|..|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~- 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET- 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee-
Confidence 456778999999999999999999999999999998776665432 21 23799999999999999999999998877
Q ss_pred EEEEEE
Q psy11701 116 YSIDLS 121 (745)
Q Consensus 116 ~~~~l~ 121 (745)
..+.|.
T Consensus 86 ~~~~v~ 91 (92)
T cd05891 86 VDVTVS 91 (92)
T ss_pred eEEEEE
Confidence 445544
No 57
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.45 E-value=8.4e-13 Score=99.66 Aligned_cols=74 Identities=27% Similarity=0.457 Sum_probs=60.9
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCCCC-eEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDR-ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|++++|.|.+.|.|.|+|+|+|+|++|..... ......++.|.|.+++.+|.|.|+|.|.|..|... .++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLL-ANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEE-EEEEEEe
Confidence 78999999999999999999999999864321 11123455899999999999999999999999888 5567665
No 58
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.45 E-value=1.3e-12 Score=101.06 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=66.6
Q ss_pred eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee--cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701 134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~ 211 (745)
...+.+|+++.|.|.+.|.|.|.+.|+|+++.+........... ..+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 45678999999999999999999999999999875422111221 2468999999999999999999999999888877
Q ss_pred EEE
Q psy11701 212 VNV 214 (745)
Q Consensus 212 l~v 214 (745)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 754
No 59
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.44 E-value=1e-12 Score=100.12 Aligned_cols=76 Identities=41% Similarity=0.878 Sum_probs=65.7
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
|+++.|.|.+.|.|.|.+.|+++|..+.............+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 7899999999999999999999999887544332344566899999999999999999999999999988888773
No 60
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.44 E-value=1.2e-12 Score=102.00 Aligned_cols=79 Identities=28% Similarity=0.372 Sum_probs=66.3
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEecc---C---CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGN---Y---GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~---~---~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
|+.++|.|.+.|.|.+.+.|+|++..|... .++.+.. . .+.|.|.++..+|+|.|+|.|.|..|... ..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEEEE
Confidence 789999999999999999999999988653 3554321 1 25799999999999999999999999877 77899
Q ss_pred EEEecCe
Q psy11701 121 SVLAAPY 127 (745)
Q Consensus 121 ~V~~~p~ 127 (745)
.|..+|.
T Consensus 80 ~V~~~P~ 86 (88)
T cd05735 80 TVQEPPD 86 (88)
T ss_pred EEeCCCC
Confidence 9987763
No 61
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.44 E-value=1.2e-12 Score=103.50 Aligned_cols=83 Identities=29% Similarity=0.530 Sum_probs=68.1
Q ss_pred cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec---CceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG---PNRITIENLRKSDTGNYGCNATNSLGYVY 207 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~ 207 (745)
.|....+.+|+++.|.|.+.|.|.|.+.|+|+|..+...... ..... ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHY-NVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCE-EEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 466778999999999999999999999999999988643321 12211 24799999999999999999999999988
Q ss_pred EEEEEEE
Q psy11701 208 KDVYVNV 214 (745)
Q Consensus 208 ~~~~l~v 214 (745)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 8777654
No 62
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.44 E-value=1.1e-12 Score=106.75 Aligned_cols=90 Identities=27% Similarity=0.414 Sum_probs=68.7
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-----CCeEeccCCc--EEEE--ccCCCCCCEEEE
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-----DRISQGNYGK--SLII--KHVEFSDQGSYT 103 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-----~~~~~~~~~~--~L~i--~~~~~~d~G~Y~ 103 (745)
|+.+...|.+..+.+|++++|.|.+.|.|.|.+.|+|+|..+... .+......+. .+.+ ..++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 345567788999999999999999999999999999999998751 1222222222 2222 234789999999
Q ss_pred EEEEeCCeeeEEEEEEEEE
Q psy11701 104 CEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 104 C~~~~~~g~~~~~~~~l~V 122 (745)
|.|.|..|...+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 9999999997777787776
No 63
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.44 E-value=1.4e-12 Score=97.15 Aligned_cols=71 Identities=31% Similarity=0.486 Sum_probs=59.8
Q ss_pred cEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 50 ~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
+++|.|.+.|.|.|.++|+|+|..+....++..... ..|.|.+++.+|+|.|+|.|.|..|... .++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~-~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE-HNLQVLGLVKSDEGFYQCIAENDVGNVQ-ASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec-CCEEEEcCCcccCEEEEEEEEcCCCEEE-EEEEEEC
Confidence 589999999999999999999999887666665443 4588999999999999999999999877 5566653
No 64
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.44 E-value=8.1e-13 Score=100.73 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=64.5
Q ss_pred ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119 (745)
Q Consensus 40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 119 (745)
|....+.+|+.++|.|.+.+. .+.+.|+|||.+|....++.+. +..|.|.+++.+|+|.|+|.+.|..|... ..+.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~-~~~~ 76 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GEEVQIKDAVPRDSGLYACVTSSPSGSDT-TYFS 76 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CCEEEECCCChhhCEEEEEEEeCCCCccc-EEEE
Confidence 466789999999999999886 5689999999999877776653 45899999999999999999999877755 3344
Q ss_pred EE
Q psy11701 120 LS 121 (745)
Q Consensus 120 l~ 121 (745)
|.
T Consensus 77 v~ 78 (79)
T cd04973 77 VN 78 (79)
T ss_pred Ee
Confidence 44
No 65
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.44 E-value=8.5e-13 Score=98.45 Aligned_cols=70 Identities=29% Similarity=0.525 Sum_probs=58.0
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee---cC--ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---GP--NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~---~~--~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
+.|.|.+.|.|.|.+.|+|+|..+.... .++.. .. .+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~--~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNT--DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCC--CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 4799999999999999999999887422 23222 22 27999999999999999999999999998888764
No 66
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.43 E-value=1.4e-12 Score=102.71 Aligned_cols=86 Identities=17% Similarity=0.338 Sum_probs=68.2
Q ss_pred eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccC---CcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701 36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNY---GKSLIIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
+.+.|.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....++..... .++|+|.+++.+|+|.|+|.|.|..|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 346778889999999999999999975 999998 6777765455443222 25899999999999999999999877
Q ss_pred eeEEEEEEEEE
Q psy11701 112 EAKSYSIDLSV 122 (745)
Q Consensus 112 ~~~~~~~~l~V 122 (745)
.....++.|.|
T Consensus 82 ~~~~~sv~l~~ 92 (92)
T cd04977 82 TESEATVNLKI 92 (92)
T ss_pred CcceeEEEEEC
Confidence 66667777654
No 67
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.43 E-value=1.5e-12 Score=103.30 Aligned_cols=89 Identities=36% Similarity=0.686 Sum_probs=75.7
Q ss_pred CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+++|..+.......... .....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 678888999999999999999999999999999999999998633222111 2456899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy11701 205 YVYKDVYVNV 214 (745)
Q Consensus 205 ~~~~~~~l~v 214 (745)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9988888765
No 68
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.43 E-value=9.5e-13 Score=95.06 Aligned_cols=66 Identities=24% Similarity=0.457 Sum_probs=56.7
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
+.|.|.+.|.|.|.++|+|||+.+... ...+.|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999998621 235699999999999999999999999987777666653
No 69
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.43 E-value=1.4e-12 Score=101.81 Aligned_cols=79 Identities=33% Similarity=0.511 Sum_probs=65.8
Q ss_pred eeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCe---EeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119 (745)
Q Consensus 43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 119 (745)
..+.+|+++.|.|.+.|.|.|.+.|+|+|..+....+. .......+|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEE-EEEE
Confidence 35788999999999999999999999999999765442 3334456899999999999999999999999866 5666
Q ss_pred EEE
Q psy11701 120 LSV 122 (745)
Q Consensus 120 l~V 122 (745)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 654
No 70
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.43 E-value=2.4e-12 Score=102.89 Aligned_cols=88 Identities=26% Similarity=0.495 Sum_probs=67.7
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-----CCeEeccC--CcEEEEccCCCCCCEEEEEE
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-----DRISQGNY--GKSLIIKHVEFSDQGSYTCE 105 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-----~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~ 105 (745)
|.+. ..+....+..|++++|.|.+.|.|.|.++|++++..+... .++..... .+.|.|.+++.+|+|.|+|.
T Consensus 3 p~i~-~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 3 PKIT-YVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred ceEE-EccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 4544 3455666667899999999999999999999998877532 23333222 25899999999999999999
Q ss_pred EEeCCeeeEEEEEEEEE
Q psy11701 106 VSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 106 ~~~~~g~~~~~~~~l~V 122 (745)
|.|..|... .++.|.|
T Consensus 82 A~N~~G~~~-~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDS-QSMYLEV 97 (97)
T ss_pred EecCCCCee-EEEEEEC
Confidence 999999876 5566654
No 71
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.43 E-value=1.3e-12 Score=98.24 Aligned_cols=73 Identities=36% Similarity=0.404 Sum_probs=63.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|+++.|.|.+.|.|.|+++|+|++..+....++..... .+|.|.+++.+|+|.|+|.|.|..|... .++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD-GSLEILNVTKSDEGKYTCFAENFFGKAN-STGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC-CeEEEccCChhHCEEEEEEEECCCCceE-EEEEEEC
Confidence 78999999999999999999999999987777776443 4799999999999999999999998877 5566554
No 72
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.42 E-value=1.5e-12 Score=103.83 Aligned_cols=86 Identities=34% Similarity=0.469 Sum_probs=70.7
Q ss_pred eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC--eEeccCCcEEEEccC-----CCCCCEEEEEEEEe
Q psy11701 36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHV-----EFSDQGSYTCEVSN 108 (745)
Q Consensus 36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~--~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~ 108 (745)
|...|.+..+.+|++++|.|.+.|.|.|.++|+|||..|..... ..... +++|.|.++ +.+|.|.|+|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP-NGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc-CCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 45678889999999999999999999999999999999975432 33323 345777776 68999999999999
Q ss_pred C-CeeeEEEEEEEEE
Q psy11701 109 G-VGEAKSYSIDLSV 122 (745)
Q Consensus 109 ~-~g~~~~~~~~l~V 122 (745)
. .|...+..+.|.|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 9998878777765
No 73
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.42 E-value=1.7e-12 Score=102.32 Aligned_cols=84 Identities=26% Similarity=0.423 Sum_probs=66.7
Q ss_pred EecCceeEeeCCCeEEEEEEEeecCC-CeEEEEe-CCEeccCCCCCCceee-----cCceEEEccCCCCCCEEEEEEEEe
Q psy11701 129 TVEPEFINAAEEETVTFECKASGLPE-PEIHWVH-NGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 129 ~~~~~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~-~g~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
...|....+.+|+++.|.|.+.|.|. +.++|++ +|+.+..... +... ..++|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~--r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQ--RISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCC--eEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence 34567778999999999999999985 6999998 7776653211 2221 136899999999999999999999
Q ss_pred CC-ceEEEEEEEEE
Q psy11701 202 SL-GYVYKDVYVNV 214 (745)
Q Consensus 202 ~~-g~~~~~~~l~v 214 (745)
.. |....++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 96 88888888776
No 74
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.42 E-value=1.3e-12 Score=98.27 Aligned_cols=72 Identities=35% Similarity=0.584 Sum_probs=61.6
Q ss_pred EEEEEEEeecCCCeeEEEECCEecC--CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPIN--PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~ 123 (745)
++|.|.+.|.|.|.|+|+|++.++. ...++.... ++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLR-SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcC-CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999999999999999999987 345666543 45799999999999999999999999988788888773
No 75
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.42 E-value=1.7e-12 Score=97.66 Aligned_cols=71 Identities=32% Similarity=0.486 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccC--C-cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNY--G-KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~--~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
++|.|.+.|.|.|.+.|+|++..|.. ..++.+... + .+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVS-CNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEE-EEEEEeC
Confidence 57999999999999999999999974 356554322 2 2799999999999999999999999877 4566654
No 76
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.42 E-value=1.9e-12 Score=98.67 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=62.2
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCCCCe-EeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI-SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|++++|.|.+.|.|.|.+.|+++|..+...... .....+..|.|.+++.+|.|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLL-ANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEE-EeEEEEE
Confidence 789999999999999999999999998754432 3334457899999999999999999999988876 5577765
No 77
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.41 E-value=2.2e-12 Score=97.73 Aligned_cols=73 Identities=29% Similarity=0.556 Sum_probs=60.4
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCC-CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE-EEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVL 123 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~l~V~ 123 (745)
++|.|.+.|.|.|.+.|+|+|.+|.... ++.+....+.|.|.+++.+|+|.|+|.|.|..|... +..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5899999999999999999999987543 455555567899999999999999999999999865 345666653
No 78
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=2e-12 Score=103.58 Aligned_cols=84 Identities=32% Similarity=0.593 Sum_probs=66.7
Q ss_pred eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecCC-----CCCeEecc--CCcEEEEccCCCCCCEEEEEEEEe
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINP-----SDRISQGN--YGKSLIIKHVEFSDQGSYTCEVSN 108 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~~-----~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (745)
..+.+..+.+|++++|.|.+.|.|.|.+.|+| ++..+.. ..++.... ...+|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 85 (98)
T cd05870 6 IQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAAS 85 (98)
T ss_pred EeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEec
Confidence 34778999999999999999999999999999 4444432 23555432 235899999999999999999999
Q ss_pred CCeeeEEEEEEEEE
Q psy11701 109 GVGEAKSYSIDLSV 122 (745)
Q Consensus 109 ~~g~~~~~~~~l~V 122 (745)
..|... .++.|.|
T Consensus 86 ~~G~~~-~~~~l~~ 98 (98)
T cd05870 86 RIGGHQ-KSMYLDI 98 (98)
T ss_pred cCCcce-eEEEEeC
Confidence 999766 5566654
No 79
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.41 E-value=2.8e-12 Score=102.19 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=67.6
Q ss_pred eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-------eecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701 134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-------KVGPNRITIENLRKSDTGNYGCNATNSLGYV 206 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~ 206 (745)
...+..|+.+.|.|.+.|.|.|.+.|+|||.++......... ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 567789999999999999999999999999998744321111 1123689999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy11701 207 YKDVYVNVL 215 (745)
Q Consensus 207 ~~~~~l~v~ 215 (745)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888764
No 80
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.41 E-value=2.8e-12 Score=104.29 Aligned_cols=96 Identities=30% Similarity=0.473 Sum_probs=72.0
Q ss_pred CCCCCeeEeeccceeEe---cCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEec--c----CCcEEEEccCC-CCC
Q psy11701 30 RHAPKQQYVTRKKEVAL---RNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQG--N----YGKSLIIKHVE-FSD 98 (745)
Q Consensus 30 ~~~p~~~~~~~~~~~v~---~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~--~----~~~~L~i~~~~-~~d 98 (745)
+++|.+...+....++. .|.+++|.|.+.|.|.+.+.|+|||..|... .++... . .++.|+|.++. .+|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 34566644433233333 4689999999999999999999999998743 344321 1 13579999997 699
Q ss_pred CEEEEEEEEeCCeeeEEEEEEEEEEecC
Q psy11701 99 QGSYTCEVSNGVGEAKSYSIDLSVLAAP 126 (745)
Q Consensus 99 ~G~Y~C~~~~~~g~~~~~~~~l~V~~~p 126 (745)
.|.|+|.|.|..|... ..+.|.|..+|
T Consensus 82 ~G~Y~C~A~N~~G~~~-~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGEDS-LDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccCc-EEEEEEecCCC
Confidence 9999999999999976 77888888766
No 81
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.40 E-value=2.1e-12 Score=95.84 Aligned_cols=69 Identities=29% Similarity=0.456 Sum_probs=57.1
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
+.|.|.+.|.|.|.+.|+|||.+|....++. ..+..|.|.+++.+|+|.|+|.|.|..|... ..+.+.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLE-KRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--cCCCEEEECcCCHHHCEEEEEEEEcCCccEE-EEEEEEE
Confidence 4799999999999999999999998665444 4456899999999999999999999887755 4444443
No 82
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.40 E-value=1.6e-12 Score=97.16 Aligned_cols=70 Identities=29% Similarity=0.564 Sum_probs=57.9
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee--cC-c--eEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--GP-N--RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--~~-~--~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
+.|.|.+.|.|.|.+.|+|++..+.... .++.. .. + .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNT--DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCC--CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 4799999999999999999999886432 23322 21 2 6999999999999999999999999998888764
No 83
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.40 E-value=4.6e-12 Score=109.09 Aligned_cols=115 Identities=24% Similarity=0.400 Sum_probs=85.5
Q ss_pred EEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEe
Q psy11701 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKP 165 (745)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~ 165 (745)
+|+|.+++.+|+|.|.|.+.+..+... ..+.|.|..+|.+...+......+|+.+.|.|.+.|. |. +.|+|+++|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQ-QIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCccee-eEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 699999999999999999988766644 7789999999999888776666689999999999984 54 48999999864
Q ss_pred ccC-----CCC--CCceeec------CceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 166 ISQ-----APP--NPRRKVG------PNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 166 ~~~-----~~~--~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
... ... ....... .+.|.|..-..++.+.|+|.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 221 000 0011111 2456676666666779999998764
No 84
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=1.7e-12 Score=95.19 Aligned_cols=68 Identities=26% Similarity=0.415 Sum_probs=55.4
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE-EEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLS 121 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~l~ 121 (745)
+.|.|.+.|.|.|.+.|+|||++|....++. .+..|.|.++..+|+|.|+|.|.|..|... +..+.|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4789999999999999999999997654332 345899999999999999999999988655 3444443
No 85
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.40 E-value=2.1e-12 Score=101.66 Aligned_cols=85 Identities=25% Similarity=0.410 Sum_probs=68.2
Q ss_pred ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eecCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNRITIENLRKSDTGNYGCNATNSLGYVYK 208 (745)
Q Consensus 130 ~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~ 208 (745)
..|....+.+|+.+.|.|.+.|.|.|.+.|+++|..+......... ......|.|.++..+|.|.|+|.|.|..|....
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 3456666899999999999999999999999999987633221111 122358999999999999999999999999888
Q ss_pred EEEEEE
Q psy11701 209 DVYVNV 214 (745)
Q Consensus 209 ~~~l~v 214 (745)
.+.|.|
T Consensus 85 ~~~L~v 90 (90)
T cd04972 85 SVQVTV 90 (90)
T ss_pred EEEEeC
Confidence 877754
No 86
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=2e-12 Score=96.32 Aligned_cols=70 Identities=33% Similarity=0.597 Sum_probs=58.5
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
+.|.|.+.|.|.|.+.|+|++..+... +......+++|.|.+++.+|.|.|+|.|.|..|... ..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN-RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR-HHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC-ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEE-EEEEEEE
Confidence 479999999999999999999887643 333334567999999999999999999999999866 6677766
No 87
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.39 E-value=3.3e-12 Score=102.10 Aligned_cols=90 Identities=29% Similarity=0.507 Sum_probs=71.3
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC--CCceee----cCceEEEccCCCCCCEEEEEE
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP--NPRRKV----GPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
.|.|...+....+..|+.+.|.|.+.|.|.|.++|++++..+..... ..+... ..+.|.|.++..+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 46677677776677799999999999999999999999887653221 112221 125899999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy11701 199 ATNSLGYVYKDVYVNV 214 (745)
Q Consensus 199 ~~~~~g~~~~~~~l~v 214 (745)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999988887764
No 88
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.39 E-value=4e-12 Score=93.45 Aligned_cols=68 Identities=22% Similarity=0.481 Sum_probs=55.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
|++++|.|.+.|.|.|.|.|+|++.++....++.. ....|.|.+++ |+|.|+|.|.|..|... .++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~--~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~-~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV--GRNVLELTNIY--ESANYTCVAISSLGMIE-ATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec--CccEEEEeccc--cCeeEEEEEEeCCCEEE-EEEEE
Confidence 78999999999999999999999999876555442 33479999874 89999999999999866 44443
No 89
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.39 E-value=3.6e-12 Score=99.21 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=63.6
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-----c---CceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----G---PNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-----~---~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~ 211 (745)
|+.+.|.|.+.|.|.+.++|+|++..+.... .++.. + .+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~--~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM--SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCC--CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 7899999999999999999999999886432 12221 1 257999999999999999999999999999999
Q ss_pred EEEee
Q psy11701 212 VNVLA 216 (745)
Q Consensus 212 l~v~~ 216 (745)
|.|..
T Consensus 79 L~V~~ 83 (88)
T cd05735 79 LTVQE 83 (88)
T ss_pred EEEeC
Confidence 99985
No 90
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.39 E-value=2.8e-12 Score=97.70 Aligned_cols=67 Identities=34% Similarity=0.498 Sum_probs=58.4
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccC--CcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY--GKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 114 (745)
|+++.|.|.+.|.|.|.+.|++++..+....++..... ...|.|.+++.+|.|.|+|.|.|..|...
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 69 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVF 69 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence 78999999999999999999999998877666654332 35899999999999999999999988776
No 91
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.39 E-value=6.5e-12 Score=99.22 Aligned_cols=82 Identities=33% Similarity=0.601 Sum_probs=66.8
Q ss_pred CeEEecCceeEee---CCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC-CCCCEEEEEEEEe
Q psy11701 126 PYFTVEPEFINAA---EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR-KSDTGNYGCNATN 201 (745)
Q Consensus 126 p~~~~~~~~~~v~---~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~ 201 (745)
|.|...|.+..+. +|+++.|.|.+.|.|.|.++|+|+|..+.... ..+....++.|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~-~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTES-DYRYSLIDGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCC-CceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence 6677778776654 47899999999999999999999999886432 23445567899999985 6999999999999
Q ss_pred CCceEEE
Q psy11701 202 SLGYVYK 208 (745)
Q Consensus 202 ~~g~~~~ 208 (745)
..|...+
T Consensus 81 ~~G~~~S 87 (94)
T cd05848 81 SIGSILS 87 (94)
T ss_pred CCCeEEe
Confidence 9998754
No 92
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.39 E-value=4.2e-12 Score=95.87 Aligned_cols=72 Identities=39% Similarity=0.612 Sum_probs=60.6
Q ss_pred cEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 50 ~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
++.|.|.+.|.|.|.+.|+|+|..+....++.+. .....|.|.+++.+|+|.|+|.|.|..|... .++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS-ATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEE-EEEEEEC
Confidence 4789999999999999999999999766666553 3456899999999999999999999998866 5566654
No 93
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.39 E-value=3.6e-12 Score=102.23 Aligned_cols=83 Identities=29% Similarity=0.530 Sum_probs=67.0
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-----CCeEecc--CCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-----DRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-----~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
.+.+..+.+|++++|.|.+.|.|.|.+.|++++..+... .++.... ..+.|.|.+++.+|.|.|+|.|.|..|
T Consensus 7 ~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 86 (96)
T cd05732 7 YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIG 86 (96)
T ss_pred ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCC
Confidence 456788999999999999999999999999998776542 2333322 235899999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy11701 112 EAKSYSIDLSV 122 (745)
Q Consensus 112 ~~~~~~~~l~V 122 (745)
... .++.|.|
T Consensus 87 ~~~-~s~~l~v 96 (96)
T cd05732 87 GDQ-QSMYLEV 96 (96)
T ss_pred CcE-EEEEEeC
Confidence 875 6666654
No 94
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.39 E-value=6.4e-12 Score=98.70 Aligned_cols=82 Identities=29% Similarity=0.436 Sum_probs=66.6
Q ss_pred cCeEEecCceeEeeCC---CeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC-CCCCEEEEEEEE
Q psy11701 125 APYFTVEPEFINAAEE---ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR-KSDTGNYGCNAT 200 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G---~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~ 200 (745)
.|.|...|.+..+.++ +.+.|.|.+.|.|.|.++|+|++..+... ..+....++.|.|.++. ..|+|.|+|.|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~--~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT--NDRYSMVGGNLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC--CCeEEEECCEEEECcCCcCCCCEEEEEEEE
Confidence 3677788887766554 48999999999999999999999987532 23455567899999985 699999999999
Q ss_pred eCCceEEE
Q psy11701 201 NSLGYVYK 208 (745)
Q Consensus 201 ~~~g~~~~ 208 (745)
|..|....
T Consensus 79 N~~G~~~s 86 (93)
T cd05849 79 NIYGKVRS 86 (93)
T ss_pred eCcceEEE
Confidence 99998655
No 95
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.38 E-value=9.4e-12 Score=98.40 Aligned_cols=82 Identities=33% Similarity=0.559 Sum_probs=67.2
Q ss_pred CeEEecCceeEeeCC---CeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC-CCCCEEEEEEEEe
Q psy11701 126 PYFTVEPEFINAAEE---ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR-KSDTGNYGCNATN 201 (745)
Q Consensus 126 p~~~~~~~~~~v~~G---~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~ 201 (745)
|.|...|.+..+.+| +++.|.|.+.|.|.+.++|+++|..+.... ..+....++.|.|.++. ..|+|.|+|.|+|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAP-ESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCC-CceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence 677788888877665 689999999999999999999999986432 23455567889998865 5999999999999
Q ss_pred CCceEEE
Q psy11701 202 SLGYVYK 208 (745)
Q Consensus 202 ~~g~~~~ 208 (745)
..|...+
T Consensus 81 ~~G~~~s 87 (94)
T cd05850 81 RCGTVVS 87 (94)
T ss_pred CcCcEEE
Confidence 9998765
No 96
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.38 E-value=5.2e-12 Score=102.64 Aligned_cols=90 Identities=30% Similarity=0.555 Sum_probs=68.9
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC---CCceeecCceEEEc-----cCCCCCCEEEE
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP---NPRRKVGPNRITIE-----NLRKSDTGNYG 196 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~L~i~-----~v~~~d~G~Y~ 196 (745)
+|.|...|....+.+|+++.|.|.+.|.|.+.+.|+|+|..+..... .......++.+.+. .++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 57888899999999999999999999999999999999998875221 11222333433222 23789999999
Q ss_pred EEEEeCCce-EEEEEEEEE
Q psy11701 197 CNATNSLGY-VYKDVYVNV 214 (745)
Q Consensus 197 C~~~~~~g~-~~~~~~l~v 214 (745)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 555566665
No 97
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=3.3e-12 Score=99.32 Aligned_cols=77 Identities=27% Similarity=0.478 Sum_probs=62.2
Q ss_pred CcEEEEEEEeecCCC--eeEEEECCEecCCCC---Ce---EeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 49 KKVELFCIFGGTPLP--QTIWSKDGVPINPSD---RI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 49 ~~~~l~C~~~g~p~~--~v~W~~~~~~i~~~~---~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
++++|.|.+.|.|.| ++.|+|||.+|.... ++ ......+.|.|.+++.+|+|.|+|.|.|..|... .++.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS-ASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE-EEEEE
Confidence 478999999999987 679999999886332 22 1223456899999999999999999999888765 77899
Q ss_pred EEEecC
Q psy11701 121 SVLAAP 126 (745)
Q Consensus 121 ~V~~~p 126 (745)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998776
No 98
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.37 E-value=3.2e-12 Score=99.31 Aligned_cols=79 Identities=30% Similarity=0.531 Sum_probs=64.0
Q ss_pred eeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
+.+..|++++|.|.+.|.|.|.+.|+|++..+.............+|.|.+++.+|+|.|+|.+.|..|... ..+.|.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~v~v 82 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN-ATYKVDV 82 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEE-EEEEEeC
Confidence 456789999999999999999999999999886554443334446899999999999999999999988755 5555543
No 99
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.37 E-value=4.2e-12 Score=94.25 Aligned_cols=70 Identities=33% Similarity=0.541 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
+.|.|.+.|.|.|.+.|+|+|..+... .+.....+.|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK---NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC---CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 469999999999999999999998754 3455567899999999999999999999999988777766653
No 100
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.37 E-value=3.1e-12 Score=94.68 Aligned_cols=68 Identities=35% Similarity=0.617 Sum_probs=58.4
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
|.|.|.+.|.|.|.+.|+|+|.++....++.+.. ++.|.|.+++.+|+|.|+|.|.|..|... .++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP-EGYLAIRDVGVADQGRYECVARNTIGYAS-VSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC-CCEEEECcCChhhCEEEEEEEECCCCcEE-EEEEe
Confidence 5799999999999999999999998777776644 45899999999999999999999998876 44443
No 101
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.37 E-value=6.1e-12 Score=97.08 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=62.5
Q ss_pred CeEEEEEEEeecCCC--eEEEEeCCEeccCCCCCCce---e--ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701 141 ETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRR---K--VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213 (745)
Q Consensus 141 ~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~~~~~---~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~ 213 (745)
++++|.|.+.|.|.+ .++|+|+|..+.......+. . ...+.|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999998877 68999999988643322222 1 1346899999999999999999999999999999999
Q ss_pred Eee
Q psy11701 214 VLA 216 (745)
Q Consensus 214 v~~ 216 (745)
|..
T Consensus 81 V~~ 83 (85)
T cd05854 81 VRG 83 (85)
T ss_pred EEC
Confidence 875
No 102
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.37 E-value=6.1e-12 Score=98.21 Aligned_cols=80 Identities=29% Similarity=0.517 Sum_probs=66.1
Q ss_pred eEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCc--eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701 135 INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR--RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 135 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l 212 (745)
..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+........ .......|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 3578899999999999999999999999999875432221 12235579999999999999999999999998888877
Q ss_pred EE
Q psy11701 213 NV 214 (745)
Q Consensus 213 ~v 214 (745)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 64
No 103
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.36 E-value=4.8e-12 Score=96.49 Aligned_cols=79 Identities=20% Similarity=0.393 Sum_probs=64.5
Q ss_pred CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~ 211 (745)
|....+.+|+.+.|.|.+.+. .+.+.|+|+|.++... .+.......|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~---~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN---NRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC---ceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 456678999999999999985 5689999999988643 234445678999999999999999999999888776665
Q ss_pred EEE
Q psy11701 212 VNV 214 (745)
Q Consensus 212 l~v 214 (745)
|.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 543
No 104
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.36 E-value=6.8e-12 Score=100.01 Aligned_cols=86 Identities=29% Similarity=0.556 Sum_probs=67.8
Q ss_pred EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccC-----CCCCCEEEEEEEEeC
Q psy11701 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL-----RKSDTGNYGCNATNS 202 (745)
Q Consensus 128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~~~~~ 202 (745)
|...|.+..+.+|+++.|.|.+.|.|.+.++|+|+|..+............++.|.|.++ ..+|.|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 456788888999999999999999999999999999988754322233344567878776 689999999999999
Q ss_pred -CceEE-EEEEEE
Q psy11701 203 -LGYVY-KDVYVN 213 (745)
Q Consensus 203 -~g~~~-~~~~l~ 213 (745)
.|... ..+.|.
T Consensus 82 ~~G~~~s~~~~l~ 94 (95)
T cd05722 82 SLGSIVSRTARLT 94 (95)
T ss_pred ccCcEEEeeeEEe
Confidence 88764 345554
No 105
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.36 E-value=7.2e-12 Score=93.28 Aligned_cols=71 Identities=32% Similarity=0.597 Sum_probs=59.3
Q ss_pred eEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 142 ~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
++.|.|.+.|.|.|.++|+|+|..+..... ......+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~--~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDY--FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCC--EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999998764321 22234567999999999999999999999999988887764
No 106
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.36 E-value=6.2e-12 Score=95.21 Aligned_cols=74 Identities=32% Similarity=0.689 Sum_probs=61.2
Q ss_pred EEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701 128 FTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV 206 (745)
Q Consensus 128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~ 206 (745)
|...|.+..+.+|+++.|.|.+.|.|.| +|+|+|+|.++.. ......+.|.|.++ .|+|.|+|.|+|..|..
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~-----~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD-----PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC-----CCCCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 3456888899999999999999999999 7999999998863 11223468999887 47899999999999976
Q ss_pred EE
Q psy11701 207 YK 208 (745)
Q Consensus 207 ~~ 208 (745)
.+
T Consensus 74 ~s 75 (81)
T cd05749 74 TS 75 (81)
T ss_pred Ee
Confidence 54
No 107
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.36 E-value=7.5e-12 Score=100.25 Aligned_cols=89 Identities=31% Similarity=0.632 Sum_probs=68.5
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEeccCCC--CCCceee----cCceEEEccCCCCCCEEEE
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPISQAP--PNPRRKV----GPNRITIENLRKSDTGNYG 196 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~~~~--~~~~~~~----~~~~L~i~~v~~~d~G~Y~ 196 (745)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.+.|+|+ +..+.... ...++.. ....|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 455543 6678899999999999999999999999994 44443211 1123322 2358999999999999999
Q ss_pred EEEEeCCceEEEEEEEEE
Q psy11701 197 CNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 197 C~~~~~~g~~~~~~~l~v 214 (745)
|.|.|..|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999888877754
No 108
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.36 E-value=6e-12 Score=95.52 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=62.5
Q ss_pred CeEEEEEEEee--cCCCeEEEEeCCEeccCCCCCCceee-----cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701 141 ETVTFECKASG--LPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213 (745)
Q Consensus 141 ~~~~l~C~~~~--~p~~~v~W~~~g~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~ 213 (745)
+++.|.|.+.+ .+.+.+.|+|||+.+.......++.. ..+.|.|.+++..|+|.|+|.|+|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 47899999976 44679999999999974322333333 356899999999999999999999999999999999
Q ss_pred Eee
Q psy11701 214 VLA 216 (745)
Q Consensus 214 v~~ 216 (745)
|..
T Consensus 81 V~~ 83 (85)
T cd05853 81 VRG 83 (85)
T ss_pred Eec
Confidence 985
No 109
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.36 E-value=5.5e-12 Score=95.58 Aligned_cols=73 Identities=27% Similarity=0.582 Sum_probs=57.4
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEE--EEEEEe
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD--VYVNVL 215 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~--~~l~v~ 215 (745)
++|.|.+.|.|.|.++|+|+|..+.............+.|.|.++..+|+|.|+|.|.|..|....+ +.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999999999999999999886443222233345689999999999999999999999987544 455443
No 110
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.36 E-value=6.6e-12 Score=94.41 Aligned_cols=72 Identities=28% Similarity=0.451 Sum_probs=57.5
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec-C--ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG-P--NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~-~--~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
+.|.|.+.|.|.|.+.|+|+|..+............ . ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999988743211111111 1 26999999999999999999999999988887764
No 111
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.35 E-value=8.3e-12 Score=98.25 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=67.0
Q ss_pred cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec---CceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG---PNRITIENLRKSDTGNYGCNATNSLGYVY 207 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~ 207 (745)
.|....+.+|+++.|.|.+.|.|.+.+.|++++..+...... ..... ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHY-SVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCE-EEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 366778999999999999999999999999999987643211 11111 13799999999999999999999999988
Q ss_pred EEEEEEE
Q psy11701 208 KDVYVNV 214 (745)
Q Consensus 208 ~~~~l~v 214 (745)
..+.|.|
T Consensus 86 ~~~~v~~ 92 (92)
T cd05891 86 VDVTVSV 92 (92)
T ss_pred eEEEEEC
Confidence 8777654
No 112
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.35 E-value=1e-11 Score=91.29 Aligned_cols=68 Identities=29% Similarity=0.621 Sum_probs=56.6
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l 212 (745)
|+++.|.|.+.|.|.|.|+|+|+|..+.... +.......|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~---~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKED---EMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcc---ceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 7899999999999999999999999875322 333455689999874 7999999999999988877665
No 113
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.35 E-value=5.8e-12 Score=94.63 Aligned_cols=72 Identities=29% Similarity=0.487 Sum_probs=61.5
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
|+++.|.|.+.|.|.+.++|+|++..+.... +.. ..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSS---RICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCC---CEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7899999999999999999999999876322 222 34578999999999999999999999999988887764
No 114
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=2.5e-12 Score=96.75 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=59.5
Q ss_pred eEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701 36 QYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114 (745)
Q Consensus 36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 114 (745)
+.+.|+...+.+|++++|+|.+.+.|.+ .+.|+|||..|. ..+..|.|.++ .+|+|.|+|.|.+. ..
T Consensus 3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~--------~~~~~l~i~~~-~~dsG~Y~C~a~~~---~~ 70 (78)
T cd05752 3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE--------TTTNSYRIRAA-NNDSGEYRCQTQGS---SL 70 (78)
T ss_pred EEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee--------ccCCeEEEeec-ccCCEEeEEECCCC---cC
Confidence 4567888899999999999999988764 799999999884 23568999999 99999999999764 33
Q ss_pred EEEEEEE
Q psy11701 115 SYSIDLS 121 (745)
Q Consensus 115 ~~~~~l~ 121 (745)
+..+.|.
T Consensus 71 S~~v~l~ 77 (78)
T cd05752 71 SDPVHLE 77 (78)
T ss_pred CCCEEEe
Confidence 3444444
No 115
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.34 E-value=1.1e-11 Score=93.63 Aligned_cols=70 Identities=29% Similarity=0.490 Sum_probs=57.4
Q ss_pred EEEEEEEeecCCCeeEEEECCEecC--CCCCeEeccCCcEEEEccCC----CCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPIN--PSDRISQGNYGKSLIIKHVE----FSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~--~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
+.|.|.+.|.|.|.|+|+|++..+. ...++.+...+++|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4799999999999999999999764 34556665556789998864 2469999999999999988877665
No 116
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.34 E-value=7.6e-12 Score=93.44 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=54.5
Q ss_pred EEEEEeecCCCeeEEEECCEecCCCCCeEe-----c--cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQ-----G--NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 53 l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~-----~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
|.|.+.|.|.|+++|+|||++|..+.++.. . ...+.|.|.+++.+|+|.|+|.|.|..|+.. +++.+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~-~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE-KNVSA 76 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc-eEEEe
Confidence 679999999999999999999986655321 1 1235799999999999999999999999866 44444
No 117
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.34 E-value=1.1e-11 Score=100.80 Aligned_cols=92 Identities=27% Similarity=0.471 Sum_probs=71.3
Q ss_pred EecCeEEecCceeEe----eCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--------ecCceEEEccCC-C
Q psy11701 123 LAAPYFTVEPEFINA----AEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--------VGPNRITIENLR-K 189 (745)
Q Consensus 123 ~~~p~~~~~~~~~~v----~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--------~~~~~L~i~~v~-~ 189 (745)
..+|.|...|....+ ..|.++.|.|.+.|.|.+.+.|+|+|..+..... ++. ...+.|.|.++. .
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~--r~~~~~~~~~~~~~s~L~I~~v~~~ 79 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP--RYEETTEHTGTVHTSILTIINVSAA 79 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCC--eEEEEeeccCccceeEEEECcCCcc
Confidence 446777666653333 2568999999999999999999999998864322 221 113579999997 5
Q ss_pred CCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701 190 SDTGNYGCNATNSLGYVYKDVYVNVLA 216 (745)
Q Consensus 190 ~d~G~Y~C~~~~~~g~~~~~~~l~v~~ 216 (745)
+|.|.|+|.|.|..|.....+.|.+..
T Consensus 80 ~D~G~Y~C~A~N~~G~~~~~i~L~~~~ 106 (109)
T cd05773 80 LDYALFTCTAHNSLGEDSLDIQLVSTS 106 (109)
T ss_pred CCCEEEEEEEEeCCccCcEEEEEEecC
Confidence 999999999999999999999988875
No 118
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.34 E-value=6.7e-12 Score=94.96 Aligned_cols=71 Identities=30% Similarity=0.488 Sum_probs=57.4
Q ss_pred EEEEEEEeecCCCeeEEEECCEecC---CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPIN---PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
++|.|.+.|.|.|+++|+|++..+. ...++.....++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSIS-ANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEE-eeEEEEE
Confidence 4799999999999999999986432 233455555566899999999999999999999988865 6677766
No 119
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.34 E-value=7.1e-12 Score=94.02 Aligned_cols=70 Identities=36% Similarity=0.628 Sum_probs=58.3
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
++|.|.+.|.|.|.+.|+|++..+... +......+..|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR-HTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEE-EEEEEEE
Confidence 579999999999999999999887643 444445567899999999999999999999998766 6666665
No 120
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.34 E-value=9.1e-12 Score=91.34 Aligned_cols=68 Identities=26% Similarity=0.377 Sum_probs=56.3
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
+.|.|.+.|.|.|.++|+|||+++.... . ......|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~---~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH---T-FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC---E-EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4689999999999999999999987431 2 223468999999999999999999999998776655554
No 121
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.34 E-value=1.3e-11 Score=98.92 Aligned_cols=89 Identities=31% Similarity=0.552 Sum_probs=69.6
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC--CCceee----cCceEEEccCCCCCCEEEEEE
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP--NPRRKV----GPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
+|.+. .+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+..... ..+... ..+.|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 45554 45567889999999999999999999999999866653221 112221 235899999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy11701 199 ATNSLGYVYKDVYVNV 214 (745)
Q Consensus 199 ~~~~~g~~~~~~~l~v 214 (745)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999888877754
No 122
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.33 E-value=6.3e-12 Score=95.25 Aligned_cols=70 Identities=29% Similarity=0.567 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCC----CCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEF----SDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
++|.|.+.|.|.|+|+|+||+.+|... .++.....++.|.|.+++. +|+|.|+|.|.|..|...+..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 579999999999999999999998643 4555555567899998864 789999999999999888776655
No 123
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.33 E-value=1.1e-11 Score=93.51 Aligned_cols=70 Identities=23% Similarity=0.462 Sum_probs=57.1
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCC--CCCeEeccCCcEEEEccCCC----CCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINP--SDRISQGNYGKSLIIKHVEF----SDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~--~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
+.|.|.+.|.|.|+|+|+|||.++.. ..++.+...+++|.|..+.. .|.|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 57999999999999999999998743 33455555567899988865 378999999999999988776665
No 124
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.33 E-value=7.7e-12 Score=91.71 Aligned_cols=68 Identities=34% Similarity=0.416 Sum_probs=53.5
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCC-CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe-eeEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDL 120 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~~l 120 (745)
+.|.|.+.|.|.|.+.|+|||.+|... .++. ..+.+|.|.+++.+|+|.|+|.|.+... ......+.|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 479999999999999999999998764 3343 3355899999999999999999998743 333344444
No 125
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.33 E-value=1.5e-11 Score=96.22 Aligned_cols=80 Identities=28% Similarity=0.479 Sum_probs=64.0
Q ss_pred CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE-EE
Q psy11701 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK-DV 210 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~-~~ 210 (745)
+..+.+.+|++++|.|.+.|. .+.+.|+|++..+.... .......+.|.|.+++.+|+|.|+|.|.|..|.... .+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR--LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC--EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 446688999999999999999 89999999999876321 112234568999999999999999999999997554 45
Q ss_pred EEEE
Q psy11701 211 YVNV 214 (745)
Q Consensus 211 ~l~v 214 (745)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 5554
No 126
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.32 E-value=1.1e-11 Score=97.43 Aligned_cols=76 Identities=30% Similarity=0.479 Sum_probs=62.5
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEec--------CCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPI--------NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i--------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 119 (745)
|++++|.|.+.|.|.|.+.|+|++..+ ....++.... ++.|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-TGDLTITNVQRSDVGYYICQTLNVAGSIL-TKAY 78 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC-CCeEEEeeCChhhCEEEEEEEEcCCCceE-EEEE
Confidence 789999999999999999999988653 1234555533 34799999999999999999999999876 6688
Q ss_pred EEEEec
Q psy11701 120 LSVLAA 125 (745)
Q Consensus 120 l~V~~~ 125 (745)
|.|...
T Consensus 79 l~V~~~ 84 (90)
T cd05726 79 LEVTDV 84 (90)
T ss_pred EEEeec
Confidence 888764
No 127
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.32 E-value=7.2e-12 Score=98.39 Aligned_cols=81 Identities=27% Similarity=0.297 Sum_probs=63.2
Q ss_pred cceeEecCCcEEEEEEEee-----cCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701 41 KKEVALRNKKVELFCIFGG-----TPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113 (745)
Q Consensus 41 ~~~~v~~G~~~~l~C~~~g-----~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 113 (745)
+...+.+|+++.|.|.+.| .|.++|.|+|++..+... ....+...+..|.|.+++.+|+|.|+|.+.|..|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 5667889999999999988 688899999998765421 122222345689999999999999999999988876
Q ss_pred EEEEEEEEE
Q psy11701 114 KSYSIDLSV 122 (745)
Q Consensus 114 ~~~~~~l~V 122 (745)
. ..+.|.|
T Consensus 87 ~-~~~~L~v 94 (94)
T cd05756 87 K-VSISLTV 94 (94)
T ss_pred E-EEEEEEC
Confidence 6 4566654
No 128
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.32 E-value=1.5e-11 Score=96.28 Aligned_cols=81 Identities=33% Similarity=0.578 Sum_probs=65.1
Q ss_pred cCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE-
Q psy11701 131 EPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK- 208 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~- 208 (745)
.|....+.+|+++.|.|.+ .|.|.+.+.|+|+|..+...... .....++.|.|.+++.+|+|.|+|.+.|..|....
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNER-VRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCC-EEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 4677788999999999998 78899999999999988753221 12233578999999999999999999999987654
Q ss_pred EEEE
Q psy11701 209 DVYV 212 (745)
Q Consensus 209 ~~~l 212 (745)
.+.|
T Consensus 81 ~~~l 84 (86)
T cd05724 81 AARL 84 (86)
T ss_pred eEEE
Confidence 3444
No 129
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.32 E-value=1.5e-11 Score=97.05 Aligned_cols=81 Identities=30% Similarity=0.413 Sum_probs=63.1
Q ss_pred eeEeeccceeEecC---CcEEEEEEEeecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCC-CCCCEEEEEEEEe
Q psy11701 35 QQYVTRKKEVALRN---KKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVE-FSDQGSYTCEVSN 108 (745)
Q Consensus 35 ~~~~~~~~~~v~~G---~~~~l~C~~~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~ 108 (745)
.|+..|.+..+.+| +.++|.|.+.|.|.|.++|+|++..|... .++. ..++.|.|.++. .+|+|.|+|.|.|
T Consensus 3 ~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 3 VFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS--LVGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred eeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE--EECCEEEEecCCccCCCEEEEEEEEc
Confidence 45566677666554 57999999999999999999999998532 3343 334579998887 4999999999999
Q ss_pred CCeeeEEEE
Q psy11701 109 GVGEAKSYS 117 (745)
Q Consensus 109 ~~g~~~~~~ 117 (745)
..|...++.
T Consensus 81 ~~G~~~S~~ 89 (91)
T cd04967 81 IVGTVLSRE 89 (91)
T ss_pred CCCEEEecc
Confidence 999877653
No 130
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.31 E-value=1.9e-11 Score=95.25 Aligned_cols=82 Identities=30% Similarity=0.517 Sum_probs=63.4
Q ss_pred EecCceeEeeCCCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCceee-cC---ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKV-GP---NRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~~-~~---~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
...|.+..+.+|+++.|.|.+.|.|. .++|++ ++..+... .+... .+ ..|.|.++..+|+|.|+|.|+|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~---~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~ 79 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS---QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK 79 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC---CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCC
Confidence 45567788999999999999999898 999998 56666533 22322 22 389999999999999999999999
Q ss_pred ceE-EEEEEEEE
Q psy11701 204 GYV-YKDVYVNV 214 (745)
Q Consensus 204 g~~-~~~~~l~v 214 (745)
|.. ..++.|.+
T Consensus 80 G~~~~~~i~l~~ 91 (92)
T cd05866 80 GQTQEATVVLEI 91 (92)
T ss_pred CcEEEEEEEEEE
Confidence 875 34455543
No 131
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.31 E-value=1.4e-11 Score=91.74 Aligned_cols=70 Identities=34% Similarity=0.648 Sum_probs=58.7
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
+.|.|.+.|.|.|.+.|+|++..+.... .......+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR--TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc--eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4699999999999999999998765321 223345679999999999999999999999999888888776
No 132
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.31 E-value=7.1e-12 Score=98.29 Aligned_cols=85 Identities=25% Similarity=0.508 Sum_probs=70.4
Q ss_pred CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701 505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG 584 (745)
Q Consensus 505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a 584 (745)
++|.++++..++.+++.|+|++|...++.+.+|.|+|+............ + ......++|.+|.|++.|+|+|+|
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~----~-~~~~~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVT----V-PGNETSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEE----E-ETTSSEEEEESCCTTSEEEEEEEE
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeee----e-eeeeeeeeeccCCCCCEEEEEEEE
Confidence 36789999999999999999999877889999999999877654111111 2 445569999999999999999999
Q ss_pred EecCCCCCCc
Q psy11701 585 YTKAGDGAES 594 (745)
Q Consensus 585 ~n~~G~g~~S 594 (745)
.|..|.|++|
T Consensus 76 ~~~~g~g~~S 85 (85)
T PF00041_consen 76 VNSDGEGPPS 85 (85)
T ss_dssp EETTEEEEEE
T ss_pred EeCCcCcCCC
Confidence 9999998875
No 133
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.31 E-value=1.7e-11 Score=92.20 Aligned_cols=72 Identities=35% Similarity=0.582 Sum_probs=57.2
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNV 214 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v 214 (745)
++|.|.+.|.|.|.++|+|++..+............++.|.|.++..+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999876432222223356789999999999999999999999975 45566655
No 134
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.30 E-value=1.8e-11 Score=92.98 Aligned_cols=68 Identities=28% Similarity=0.440 Sum_probs=54.9
Q ss_pred EEEEEeecCCCeeEEEECCEecCCCCCeEe--c-------cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEE
Q psy11701 53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQ--G-------NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121 (745)
Q Consensus 53 l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~--~-------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~ 121 (745)
|.|.+.|.|.|+|+|+|||++|....+... . ...+.|.|.+++.+|+|.|+|.|.|..|+.. ..+.|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS-KSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee-eEEEee
Confidence 689999999999999999999986654321 1 1234799999999999999999999999877 444443
No 135
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.30 E-value=2.9e-11 Score=96.81 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=65.0
Q ss_pred eeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCC--CCeEeccC------CcEEEEccCCCCC-CEEEEEEEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPS--DRISQGNY------GKSLIIKHVEFSD-QGSYTCEVS 107 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~--~~~~~~~~------~~~L~i~~~~~~d-~G~Y~C~~~ 107 (745)
..+....+.+|+++.|.|.+.|.|.| .|.|++++..|... .++.+... .++|.|.+++.+| .|.|+|.|.
T Consensus 6 ~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~ 85 (98)
T cd05758 6 TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAW 85 (98)
T ss_pred cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEE
Confidence 34567778999999999999999999 69999999988753 45554322 1479999999955 899999999
Q ss_pred eCCeeeEEEEEEE
Q psy11701 108 NGVGEAKSYSIDL 120 (745)
Q Consensus 108 ~~~g~~~~~~~~l 120 (745)
|..|... ..+.|
T Consensus 86 N~~G~~~-~~~~L 97 (98)
T cd05758 86 NSFGSGT-AIISL 97 (98)
T ss_pred cCCCccc-EEEEe
Confidence 9999866 33443
No 136
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=1.8e-11 Score=92.59 Aligned_cols=73 Identities=30% Similarity=0.555 Sum_probs=58.0
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
+.|.|.+.|.|.|.++|+|+|..........+.. ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|+
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 4799999999999999999986432222222222 245689999999999999999999999998888888773
No 137
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.30 E-value=1.6e-11 Score=95.46 Aligned_cols=76 Identities=25% Similarity=0.415 Sum_probs=62.3
Q ss_pred CeEEEEEEEeecCCC--eEEEEeCCEeccCCCCCCce-----eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701 141 ETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRR-----KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213 (745)
Q Consensus 141 ~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~ 213 (745)
+++.|.|.+.|.|.+ .+.|+|+|..+........+ ....+.|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 578999999998877 67999999988643322211 12457899999999999999999999999999999999
Q ss_pred Eee
Q psy11701 214 VLA 216 (745)
Q Consensus 214 v~~ 216 (745)
|..
T Consensus 81 V~~ 83 (85)
T cd04970 81 VRG 83 (85)
T ss_pred EEC
Confidence 875
No 138
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.30 E-value=1.4e-11 Score=91.94 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=56.2
Q ss_pred EEEEEEeecCCCeEEEEeCCEeccCCCCCCce------eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRR------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213 (745)
Q Consensus 144 ~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~ 213 (745)
.|.|.+.|+|.|+++|+|||+.|......... ....+.|.|.++..+|+|.|+|.|+|..|....++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 37899999999999999999999754322111 11245899999999999999999999999888776654
No 139
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.28 E-value=1.7e-11 Score=96.33 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=65.1
Q ss_pred eeEeeCCCeEEEEEEEee-----cCCCeEEEEeCCEeccCC-CCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701 134 FINAAEEETVTFECKASG-----LPEPEIHWVHNGKPISQA-PPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~ 207 (745)
...+.+|+++.|.|.+.+ .|.+.+.|||++..+... ....+.....+.|.|.++..+|+|.|+|.++|..|...
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 445779999999999988 688899999999765421 12234444567999999999999999999999999988
Q ss_pred EEEEEEE
Q psy11701 208 KDVYVNV 214 (745)
Q Consensus 208 ~~~~l~v 214 (745)
..+.|.|
T Consensus 88 ~~~~L~v 94 (94)
T cd05756 88 VSISLTV 94 (94)
T ss_pred EEEEEEC
Confidence 8877754
No 140
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.28 E-value=1e-11 Score=97.50 Aligned_cols=74 Identities=28% Similarity=0.501 Sum_probs=56.6
Q ss_pred CCcEEEEEEEeecCCCeeEEEECC----EecCCCC-Ce-E---------eccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDG----VPINPSD-RI-S---------QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~----~~i~~~~-~~-~---------~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
|++++|.|.+.|.|.|.|+|+|++ ..+.... .. . .......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999964 3332211 11 1 1122347999999999999999999999998
Q ss_pred eEEEEEEEEE
Q psy11701 113 AKSYSIDLSV 122 (745)
Q Consensus 113 ~~~~~~~l~V 122 (745)
.. .++.|.|
T Consensus 81 ~~-~sa~L~V 89 (90)
T cd04974 81 SH-HSAWLTV 89 (90)
T ss_pred cc-CCEEEEe
Confidence 76 5677776
No 141
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.28 E-value=1.7e-11 Score=92.56 Aligned_cols=72 Identities=28% Similarity=0.520 Sum_probs=58.4
Q ss_pred eEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 142 ~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
.+.|.|.+.|.|.|.+.|+|+|..+...... ... ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRV-QIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeE-EEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 3689999999999999999999998533211 111 13468999999999999999999999999888877754
No 142
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.28 E-value=1.4e-11 Score=94.39 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=63.9
Q ss_pred eeccceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 116 (745)
+.++...|.+|++++|.|.+. +.+.+++.|+|+|..+.. ...+..|.|.+++.+|+|.|+|.+.+..++..+.
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~ 77 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSE 77 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCceecCC
Confidence 445555799999999999985 456678999999987742 1234579999999999999999999999888777
Q ss_pred EEEEEE
Q psy11701 117 SIDLSV 122 (745)
Q Consensus 117 ~~~l~V 122 (745)
.+.|+|
T Consensus 78 ~~~i~~ 83 (83)
T cd05753 78 PVSITV 83 (83)
T ss_pred CEEEEC
Confidence 777765
No 143
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.28 E-value=2e-11 Score=90.58 Aligned_cols=69 Identities=25% Similarity=0.568 Sum_probs=57.2
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
+.|.|.+.|.|.|.+.|+|++..+... .......+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG---RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC---cEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999998766432 122235678999999999999999999999999888877754
No 144
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.27 E-value=1.4e-11 Score=92.76 Aligned_cols=67 Identities=28% Similarity=0.599 Sum_probs=57.5
Q ss_pred CeEEecCceeEeeCCCeEEEEEEEeecCC-CeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701 126 PYFTVEPEFINAAEEETVTFECKASGLPE-PEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS 202 (745)
Q Consensus 126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 202 (745)
|.+...|....+.+|++++|+|.+.+.|. ..+.|+|||..+.. ..+.|.|.++ .+|+|.|+|.|.+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 45677889899999999999999998776 47999999998731 3468999999 99999999999874
No 145
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.27 E-value=2.4e-11 Score=89.97 Aligned_cols=67 Identities=28% Similarity=0.648 Sum_probs=56.6
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l 212 (745)
+.|.|.+.|.|.|.++|+|+|..+... .+... .++.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~---~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES---GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC---CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 479999999999999999999988632 23322 46799999999999999999999999998877665
No 146
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=3.2e-11 Score=91.05 Aligned_cols=73 Identities=33% Similarity=0.525 Sum_probs=59.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..... .++|.|.+++.+|.|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD-NGTLDILITTVKDTGSFTCIASNAAGEAT-ATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec-CCEEEEEECChhhCEEEEEEEECCCCeEE-EEEEEEC
Confidence 7899999999999999999997 677776555554433 45899999999999999999999998765 5566654
No 147
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.27 E-value=2.9e-11 Score=94.94 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=66.7
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC----CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS----DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 114 (745)
+|+...+.+|+++.|.|.+.+ |.+.+.|+|++..+... .++... ...|.|.+++.+|+|.|+|.+.+..+...
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCcccee
Confidence 456678999999999999986 77899999999887654 234432 34599999999999999999998776666
Q ss_pred EEEEEEEEEe
Q psy11701 115 SYSIDLSVLA 124 (745)
Q Consensus 115 ~~~~~l~V~~ 124 (745)
..++.|.|..
T Consensus 79 ~~~~~l~V~~ 88 (89)
T cd04979 79 LATYSLNVLE 88 (89)
T ss_pred EeEEEEEEec
Confidence 6778887753
No 148
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.27 E-value=4.9e-11 Score=90.55 Aligned_cols=80 Identities=28% Similarity=0.464 Sum_probs=68.0
Q ss_pred CeEEEEEEEEecCCCCcEEEEeeCCeeccCC-CCCeEEE----cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701 323 QSATFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPRFVQ----SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397 (745)
Q Consensus 323 ~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~----~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~ 397 (745)
+++.|.|.+.+++.+++.+.|++++.++.+. ...++.. ...+.|.|.+++..|.|.|+|.|.|..+...+++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999999988778999999999999753 2334444 2456899999999999999999999999999999999
Q ss_pred EeccC
Q psy11701 398 VQVPL 402 (745)
Q Consensus 398 v~~pp 402 (745)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99876
No 149
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.26 E-value=5.2e-11 Score=90.39 Aligned_cols=72 Identities=33% Similarity=0.569 Sum_probs=60.7
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCC--CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~ 123 (745)
+.|.|.+.|.|.|.+.|+|++..|.... ++.....+..|.|.+++.+|.|.|+|.+.|..|... ..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE-DISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcc-eEEEEEEE
Confidence 4699999999999999999999987543 455555566899999999999999999999988877 66777775
No 150
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.26 E-value=4.5e-11 Score=90.87 Aligned_cols=70 Identities=21% Similarity=0.371 Sum_probs=56.3
Q ss_pred EEEEEEeecCCCeEEEEeCCEeccCCCCCCce-e-------ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRR-K-------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213 (745)
Q Consensus 144 ~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~-------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~ 213 (745)
.|.|.+.|.|.|.++|+|||+.+......... . ...+.|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 37899999999999999999999754321111 1 1234799999999999999999999999988877664
No 151
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.25 E-value=3.2e-11 Score=89.46 Aligned_cols=69 Identities=45% Similarity=0.712 Sum_probs=61.9
Q ss_pred EEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304 (745)
Q Consensus 236 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v 304 (745)
++|.|.+.|.|.+.+.|++++..+...++.....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999998888777777777789999999999999999999999999888777754
No 152
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.25 E-value=6.9e-11 Score=90.09 Aligned_cols=68 Identities=21% Similarity=0.354 Sum_probs=57.5
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
.|.+..+.+|+++.|.|.+.+ +.+++.|++||.+|... .++.+. .+.|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~--~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY--RDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE--CCcEEEeCCCHHHCEEEEEEEEec
Confidence 578889999999999999864 67799999999999865 455443 346999999999999999999865
No 153
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.25 E-value=4.7e-11 Score=87.57 Aligned_cols=68 Identities=21% Similarity=0.417 Sum_probs=54.4
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l 212 (745)
+.|.|.+.|.|.|++.|+|+|.++.... .+......+|.|.++..+|+|.|+|.|+|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC--SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCC--cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 3689999999999999999999886432 2344456689999999999999999999986555544443
No 154
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.25 E-value=1.3e-10 Score=100.12 Aligned_cols=112 Identities=17% Similarity=0.296 Sum_probs=83.6
Q ss_pred eEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeec-CC-CeEEEeeCCEE
Q psy11701 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK-PEVNWIHNQKE 258 (745)
Q Consensus 181 ~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~ 258 (745)
+|.|.+++..|+|.|.|.+.+..+.....+.|.|.. +|.+...+.......|+.++|.|.+.+. |. +.|.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE-PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec-CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 689999999999999999999888888888898874 7888777766665689999999999986 43 48999998753
Q ss_pred cc------Cc----eEEEeecC------cEEEcccCCCCCEEEEEEEEeCC
Q psy11701 259 LT------GG----RYTILETG------DLKITDVAFADSGEYTCFARNKL 293 (745)
Q Consensus 259 ~~------~~----~~~~~~~~------~l~i~~~~~~d~G~Y~C~~~n~~ 293 (745)
.. .. ......++ .|.+.....++...|+|.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11 11 11122233 35555555556779999998753
No 155
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.24 E-value=5.2e-11 Score=90.64 Aligned_cols=73 Identities=33% Similarity=0.553 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l 212 (745)
|+++.|.|.+.|.|.|.++|++++..+.......... ...+.|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 7899999999999999999999998876432111111 123689999999999999999999999987766444
No 156
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.23 E-value=5.1e-11 Score=92.47 Aligned_cols=78 Identities=27% Similarity=0.594 Sum_probs=62.8
Q ss_pred EeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 136 NAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 136 ~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
....|+++.|.|.+.|.|.+.+.|+|++..+...... ........|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc-eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 4567999999999999999999999999887533211 11223468999999999999999999999998877776653
No 157
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.23 E-value=1.4e-10 Score=91.40 Aligned_cols=82 Identities=34% Similarity=0.647 Sum_probs=65.3
Q ss_pred CeEEecCceeEeeC---CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCC-CCCEEEEEEEEe
Q psy11701 126 PYFTVEPEFINAAE---EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK-SDTGNYGCNATN 201 (745)
Q Consensus 126 p~~~~~~~~~~v~~---G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~ 201 (745)
|.|...|.+..+.+ |+++.|.|.+.|.|.+.++|+|++..+.... .......++.|.|.++.. +|+|.|+|.|+|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEP-DSRYSLVGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCC-CCCEEEECCEEEEecCCccCCCEEEEEEEEc
Confidence 56777777766544 4679999999999999999999999885332 234555678899998874 999999999999
Q ss_pred CCceEEE
Q psy11701 202 SLGYVYK 208 (745)
Q Consensus 202 ~~g~~~~ 208 (745)
..|...+
T Consensus 81 ~~G~~~S 87 (91)
T cd04967 81 IVGTVLS 87 (91)
T ss_pred CCCEEEe
Confidence 9997654
No 158
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.23 E-value=4.4e-11 Score=91.48 Aligned_cols=71 Identities=39% Similarity=0.551 Sum_probs=56.3
Q ss_pred EEEEEEEeecCCCeeEEEECCEecC--------CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPIN--------PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~--------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
|+|.|.+.|.|.|.+.|+|++.... ...++.... +++|.|.+++.+|+|.|+|.|.|..|...++.+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec-CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 5799999999999999999643211 234454433 4589999999999999999999999988778777764
No 159
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.23 E-value=5.4e-11 Score=93.53 Aligned_cols=74 Identities=28% Similarity=0.506 Sum_probs=57.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEEC----CEecCCCCC--eEe---------ccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKD----GVPINPSDR--ISQ---------GNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~----~~~i~~~~~--~~~---------~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
|++++|.|.+.|.|.|.|.|+|+ +..+..... ... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 444443221 111 111257999999999999999999999998
Q ss_pred eEEEEEEEEE
Q psy11701 113 AKSYSIDLSV 122 (745)
Q Consensus 113 ~~~~~~~l~V 122 (745)
.. .++.|.|
T Consensus 81 ~~-~~a~L~V 89 (90)
T cd05858 81 SH-HSAWLTV 89 (90)
T ss_pred cc-ceEEEEE
Confidence 66 6677766
No 160
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.23 E-value=9.5e-11 Score=92.23 Aligned_cols=84 Identities=25% Similarity=0.378 Sum_probs=61.8
Q ss_pred EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCceee---cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKV---GPNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
+.+.|....+..|+++.|.|.+.|.|. .+.|++ ++..+...... .... ..+.|+|.+++.+|+|.|+|.|.|..
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 80 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQI-SVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK 80 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCE-EEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence 345677788999999999999999874 999998 66655432111 1111 12489999999999999999999986
Q ss_pred ce-EEEEEEEE
Q psy11701 204 GY-VYKDVYVN 213 (745)
Q Consensus 204 g~-~~~~~~l~ 213 (745)
|. ...++.|.
T Consensus 81 g~~~~~sv~l~ 91 (92)
T cd04977 81 GTESEATVNLK 91 (92)
T ss_pred CCcceeEEEEE
Confidence 54 45555554
No 161
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.23 E-value=6.3e-11 Score=88.82 Aligned_cols=70 Identities=34% Similarity=0.665 Sum_probs=57.8
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
+.|.|.+.|.|.|.+.|+|++..+.... .........|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR--TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc--eeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998775321 122234568999999999999999999999999888887766
No 162
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.23 E-value=1.2e-10 Score=88.76 Aligned_cols=70 Identities=16% Similarity=0.349 Sum_probs=59.5
Q ss_pred cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
.|.+..+..|+++.|.|.+.+ +.+++.|++||..+.... .+....++.|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~--~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES--AKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC--ceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 477888999999999999865 678999999999987542 3556667889999999999999999998764
No 163
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.22 E-value=6.3e-11 Score=93.15 Aligned_cols=75 Identities=25% Similarity=0.436 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeecCCCeEEEEeC----CEeccCCCCCC-ceee---------cCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701 140 EETVTFECKASGLPEPEIHWVHN----GKPISQAPPNP-RRKV---------GPNRITIENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~----g~~~~~~~~~~-~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
|+++.|.|.+.|.|.|.++|+|+ |..+....... .... ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 44333111100 0000 1257999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy11701 206 VYKDVYVNV 214 (745)
Q Consensus 206 ~~~~~~l~v 214 (745)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 998888877
No 164
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.22 E-value=1.4e-10 Score=92.89 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=66.5
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeec--------CceEEEccCCC-CCCEE
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVG--------PNRITIENLRK-SDTGN 194 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~--------~~~L~i~~v~~-~d~G~ 194 (745)
||.+. .+....+.+|+++.|.|.+.|.|.| .+.|++++..+..... .++... .+.|.|.++.. +|.|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~-~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSS-GRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCC-CCEEEEEecCCCceEEEEEECCcccccccee
Confidence 45553 4556678999999999999999998 6999999998864321 122221 14799999999 55899
Q ss_pred EEEEEEeCCceEEEEEEE
Q psy11701 195 YGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 195 Y~C~~~~~~g~~~~~~~l 212 (745)
|+|.|.|..|.....+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999987776654
No 165
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.21 E-value=6e-11 Score=93.08 Aligned_cols=75 Identities=23% Similarity=0.412 Sum_probs=57.5
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCC----EeccCCCCCC-c---------eeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNG----KPISQAPPNP-R---------RKVGPNRITIENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g----~~~~~~~~~~-~---------~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
|+.+.|.|.+.|.|.|.|+|+|++ ..+....... . .......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 788999999999999999999964 2221111100 0 0112357999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy11701 206 VYKDVYVNV 214 (745)
Q Consensus 206 ~~~~~~l~v 214 (745)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888877
No 166
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.21 E-value=1.1e-10 Score=88.15 Aligned_cols=73 Identities=33% Similarity=0.567 Sum_probs=59.3
Q ss_pred CCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701 140 EETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v 214 (745)
|+.+.|.|.+.|.|.|.+.|++ ++..+.... .......+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSS--RTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCC--eEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 566654221 122335678999999999999999999999999887777654
No 167
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.20 E-value=1.2e-10 Score=91.57 Aligned_cols=75 Identities=32% Similarity=0.623 Sum_probs=65.1
Q ss_pred CceEEEEEEEeecCCCeEEEeeCCEEc---------cCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701 233 GKTVVLTCRVFGAPKPEVNWIHNQKEL---------TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLT 303 (745)
Q Consensus 233 g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~ 303 (745)
|+.++|.|.+.+.|.+.+.|++++..+ ...++.+...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 688999999999999999999987642 24466666677899999999999999999999999999999999
Q ss_pred Eeec
Q psy11701 304 VKEH 307 (745)
Q Consensus 304 v~~~ 307 (745)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9764
No 168
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.18 E-value=1.8e-10 Score=87.39 Aligned_cols=73 Identities=29% Similarity=0.516 Sum_probs=59.5
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
+.|.|.+.|.|.+.+.|+|++..+........... ....|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 46999999999999999999998864432211222 33579999999999999999999999999988888775
No 169
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.18 E-value=1.7e-10 Score=91.02 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=60.8
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEEC--------CEecCCCCCeEec---cCCcEEEEccCCCCCCEEEEEEEE
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--------GVPINPSDRISQG---NYGKSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--------~~~i~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
.++++.+.+|++++|.|.+.+.|.+.+.|++. +.......|+... ....+|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 46788999999999999999999999999862 3223334566542 233589999999999999999998
Q ss_pred eCCeeeEEEEEEEEE
Q psy11701 108 NGVGEAKSYSIDLSV 122 (745)
Q Consensus 108 ~~~g~~~~~~~~l~V 122 (745)
...+. +....|.|
T Consensus 83 t~~~~--~~~~~l~v 95 (95)
T cd07701 83 TMPVK--TSKAYLTV 95 (95)
T ss_pred eecCc--cEEEEEEC
Confidence 74332 34455543
No 170
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.18 E-value=2.6e-10 Score=89.46 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=56.1
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEECCEec--------CCCCCeEecc---CCcEEEEccCCCCCCEEEEEEEE
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI--------NPSDRISQGN---YGKSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i--------~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
..+++.+.+|+++.|.|.+.|.|.+.|.|+|++..+ ....|+.+.. ...+|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 3 VTQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred ccccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 457889999999999999999999999999876532 1234544322 23589999999999999999998
Q ss_pred e
Q psy11701 108 N 108 (745)
Q Consensus 108 ~ 108 (745)
.
T Consensus 83 t 83 (95)
T cd05882 83 T 83 (95)
T ss_pred e
Confidence 6
No 171
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.18 E-value=1.2e-10 Score=88.42 Aligned_cols=64 Identities=28% Similarity=0.461 Sum_probs=52.9
Q ss_pred EEEEEEEee-cCCCeeEEEECCEecCCCCCeE---e--ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701 51 VELFCIFGG-TPLPQTIWSKDGVPINPSDRIS---Q--GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114 (745)
Q Consensus 51 ~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~---~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 114 (745)
++|.|.+.| .|.|++.|+|++++|....+.. + ......|.|.+++.+|.|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 70 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDT 70 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCcee
Confidence 479999999 8999999999999987654321 2 22345899999999999999999999998766
No 172
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.17 E-value=1.9e-10 Score=89.62 Aligned_cols=71 Identities=24% Similarity=0.402 Sum_probs=57.7
Q ss_pred ceeEecCCcEEEEEEEee-----cCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701 42 KEVALRNKKVELFCIFGG-----TPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g-----~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 114 (745)
.+.+.+|+++.|.|...+ +|.|.+.|+||+++|....+... .++.|.|.+++.+|+|.|+|.+.+..+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 356889999999998743 25779999999999986554432 567899999999999999999998766544
No 173
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.17 E-value=2.8e-10 Score=87.69 Aligned_cols=76 Identities=17% Similarity=0.394 Sum_probs=57.2
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCCCC----CeEecc--CCcEEEEccCCCCCCEEEEEEEEeCCe-eeEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDL 120 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~----~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~~l 120 (745)
|++++|.|.+.|.|.+.+.|+++++.+.... +..+.. ....|.|.+++.+|+|.|+|.|.+..+ ...++++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 8899999999999999999998776543211 111111 235899999999999999999998654 344577888
Q ss_pred EEE
Q psy11701 121 SVL 123 (745)
Q Consensus 121 ~V~ 123 (745)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 775
No 174
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.17 E-value=2.1e-10 Score=88.63 Aligned_cols=75 Identities=28% Similarity=0.486 Sum_probs=57.4
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCE---ec--cCCCCCCce-eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGK---PI--SQAPPNPRR-KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~---~~--~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~ 213 (745)
|+++.|.|.+.|.|.|.++|+|++. .+ ......... ....+.|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999742 11 111111111 22346899999999999999999999999988888776
Q ss_pred E
Q psy11701 214 V 214 (745)
Q Consensus 214 v 214 (745)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 175
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.16 E-value=1.8e-10 Score=88.94 Aligned_cols=73 Identities=26% Similarity=0.470 Sum_probs=55.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCE---e--cCCCC---CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGV---P--INPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~---~--i~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 119 (745)
|++++|.|.+.|.|.|.++|+|++. . +.... ++.. .....|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLR-ANFP 78 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEE-EEEE
Confidence 7899999999999999999999732 1 11111 1222 2345899999999999999999999999866 5666
Q ss_pred EEE
Q psy11701 120 LSV 122 (745)
Q Consensus 120 l~V 122 (745)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 654
No 176
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.15 E-value=2.5e-10 Score=88.80 Aligned_cols=76 Identities=20% Similarity=0.387 Sum_probs=61.8
Q ss_pred eeEeeccceeEecCCcEEEEEEEee-cCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701 35 QQYVTRKKEVALRNKKVELFCIFGG-TPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113 (745)
Q Consensus 35 ~~~~~~~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 113 (745)
..+..|....+.+|++++|.|.+.+ .|.+.+.|++++..+... . ...++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A--MDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c--cccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 3455677788999999999999964 688899999998776432 1 1235689999999999999999999988876
Q ss_pred E
Q psy11701 114 K 114 (745)
Q Consensus 114 ~ 114 (745)
.
T Consensus 79 ~ 79 (85)
T cd05754 79 E 79 (85)
T ss_pred e
Confidence 6
No 177
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.13 E-value=2.1e-10 Score=88.96 Aligned_cols=74 Identities=22% Similarity=0.349 Sum_probs=56.1
Q ss_pred CCcEEEEEEEeec--CCCeeEEEECCEecCCCCC----eEec---cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701 48 NKKVELFCIFGGT--PLPQTIWSKDGVPINPSDR----ISQG---NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI 118 (745)
Q Consensus 48 G~~~~l~C~~~g~--p~~~v~W~~~~~~i~~~~~----~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 118 (745)
|++++|.|.+.|. |.+.+.|++++..+..... .... ...+.|.|.+++.+|+|.|+|.|.|..|... .+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~-~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK-EST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE-EEE
Confidence 7899999999999 7889999998876543211 1111 1235899999999999999999999887755 556
Q ss_pred EEEE
Q psy11701 119 DLSV 122 (745)
Q Consensus 119 ~l~V 122 (745)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 6655
No 178
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.13 E-value=2.5e-10 Score=88.45 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=58.6
Q ss_pred CCeEEEEEEEeec--CCCeEEEEeCCEeccCCCCCC------ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701 140 EETVTFECKASGL--PEPEIHWVHNGKPISQAPPNP------RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211 (745)
Q Consensus 140 G~~~~l~C~~~~~--p~~~v~W~~~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~ 211 (745)
|+++.|.|.+.+. |.+.++|+++++.+....... ......+.|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 788999999887654221111 11123468999999999999999999999998888877
Q ss_pred EEE
Q psy11701 212 VNV 214 (745)
Q Consensus 212 l~v 214 (745)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 179
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.12 E-value=5.7e-10 Score=84.18 Aligned_cols=67 Identities=28% Similarity=0.523 Sum_probs=51.2
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCc-eeecCceEEEccCC----CCCCEEEEEEEEeCCceEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLR----KSDTGNYGCNATNSLGYVYKD 209 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~-~~~~~~~L~i~~v~----~~d~G~Y~C~~~~~~g~~~~~ 209 (745)
+.|.|.+.|.|.|.++|+|+|..+........ ....++.|.|..+. .+|+|.|+|.|+|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 46999999999999999999997753322222 22356789998764 257999999999999976654
No 180
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.12 E-value=3.2e-10 Score=86.01 Aligned_cols=69 Identities=20% Similarity=0.473 Sum_probs=55.3
Q ss_pred EEEEEEEee-cCCCeEEEEeCCEeccCCCCCCc--ee--ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701 143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNPR--RK--VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211 (745)
Q Consensus 143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~--~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~ 211 (745)
+.|.|.+.| .|.+.+.|+|+|+.+........ .. ...+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 369999999 89999999999998875433221 11 13468999999999999999999999998776654
No 181
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.11 E-value=6.4e-10 Score=83.93 Aligned_cols=67 Identities=24% Similarity=0.490 Sum_probs=51.4
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCc-eeecCceEEEccCCC----CCCEEEEEEEEeCCceEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRK----SDTGNYGCNATNSLGYVYKD 209 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~-~~~~~~~L~i~~v~~----~d~G~Y~C~~~~~~g~~~~~ 209 (745)
+.|.|.+.|.|.|+++|+|+|..+........ ....++.|.|..+.. .|.|.|+|.|+|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 47999999999999999999998853322211 222467888887764 37899999999999986654
No 182
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.11 E-value=3.6e-10 Score=85.58 Aligned_cols=66 Identities=27% Similarity=0.575 Sum_probs=52.0
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCCCCc-eeecCceEEEccCCC----CCCEEEEEEEEeCCceEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRK----SDTGNYGCNATNSLGYVYK 208 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~-~~~~~~~L~i~~v~~----~d~G~Y~C~~~~~~g~~~~ 208 (745)
+.|.|.+.|.|.|+++|+|+|..+........ ....++.|.|.++.. +|+|.|+|.|+|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47999999999999999999998864332211 223468999998854 7899999999999997654
No 183
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.11 E-value=2.2e-10 Score=88.51 Aligned_cols=72 Identities=28% Similarity=0.316 Sum_probs=58.3
Q ss_pred ccceeEecCCcEEEEEEE-eecCCCeeEEEECCEec--CCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701 40 RKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPI--NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 40 ~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
.+...+.+|+.+.|.|.. .|.|.+.+.|++++.++ ....+..+...++.|.|.+++.+|+|.|+|.|.+...
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 344568999999999987 78899999999998764 3334444445567899999999999999999998653
No 184
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.10 E-value=1e-09 Score=85.80 Aligned_cols=79 Identities=33% Similarity=0.528 Sum_probs=62.6
Q ss_pred eeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe---ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119 (745)
Q Consensus 43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 119 (745)
..+.+|++++|.|.+.+.|.+.+.|+|++..+........ ......|.|.+++.+|.|.|+|.+.+..|... .++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~-~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSIN-HTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEE-EEEE
Confidence 3567899999999999999999999999998875543332 12234799999999999999999999888754 5566
Q ss_pred EEE
Q psy11701 120 LSV 122 (745)
Q Consensus 120 l~V 122 (745)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 543
No 185
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.09 E-value=1.5e-09 Score=84.88 Aligned_cols=82 Identities=23% Similarity=0.441 Sum_probs=64.6
Q ss_pred eeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCC--CCeEecc------CCcEEEEccCCCCC-CEEEEEEEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPS--DRISQGN------YGKSLIIKHVEFSD-QGSYTCEVS 107 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~--~~~~~~~------~~~~L~i~~~~~~d-~G~Y~C~~~ 107 (745)
.....+.+.+|+++.|.|.+.+.|.| .|.|..++..|..+ .++.+.. ..+.|+|.++..+| .|.|.|.|.
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~ 85 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAW 85 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEE
Confidence 66777889999999999999888877 67898888777653 5665433 23589999998877 799999999
Q ss_pred eCCeeeEEEEEEE
Q psy11701 108 NGVGEAKSYSIDL 120 (745)
Q Consensus 108 ~~~g~~~~~~~~l 120 (745)
|..|... ..+.|
T Consensus 86 N~~G~d~-~~i~L 97 (98)
T cd05898 86 NSFGSGT-AIIQL 97 (98)
T ss_pred eCCccce-EEEEe
Confidence 9999877 33443
No 186
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.09 E-value=8e-10 Score=85.95 Aligned_cols=78 Identities=26% Similarity=0.392 Sum_probs=63.8
Q ss_pred ecCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701 130 VEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK 208 (745)
Q Consensus 130 ~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~ 208 (745)
..|....+.+|++++|.|.+.+ .|.+.+.|++++..+.. ......+.|.|.+++.+|+|.|+|.+.|..|....
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-----RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC-----cccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 3466778899999999999965 67889999999876542 12234578999999999999999999999998887
Q ss_pred EEEE
Q psy11701 209 DVYV 212 (745)
Q Consensus 209 ~~~l 212 (745)
.+.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 7654
No 187
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.07 E-value=6.6e-10 Score=84.94 Aligned_cols=71 Identities=27% Similarity=0.495 Sum_probs=52.4
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCC-----CCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEE
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQA-----PPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVN 213 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~-----~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~ 213 (745)
++|.|.+.|.|.|.+.|++++...... ....+.. ..+++|.|.++..+|+|.|+|.|.|..|.. ...+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 579999999999999999974322111 0122332 356899999999999999999999999876 3445544
No 188
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.07 E-value=1.2e-09 Score=84.43 Aligned_cols=74 Identities=39% Similarity=0.692 Sum_probs=61.7
Q ss_pred cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
+...+.+|++++|.|.+.+.|..++.|++++..+... ...|.|.+++.+|.|.|+|.+.+..+...+..+.|
T Consensus 7 ~~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 7 SPQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp ESSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 3367999999999999999888999999999887621 11278889999999999999999777777777777
Q ss_pred EE
Q psy11701 121 SV 122 (745)
Q Consensus 121 ~V 122 (745)
.|
T Consensus 79 ~V 80 (80)
T PF13895_consen 79 TV 80 (80)
T ss_dssp EE
T ss_pred eC
Confidence 76
No 189
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.07 E-value=1.3e-09 Score=85.66 Aligned_cols=83 Identities=20% Similarity=0.424 Sum_probs=63.9
Q ss_pred CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC-CCceeecCceEEEccCCCCCCEEEEEEEEeCC-ceEEEE
Q psy11701 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP-NPRRKVGPNRITIENLRKSDTGNYGCNATNSL-GYVYKD 209 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-g~~~~~ 209 (745)
|....+.+|+++.|.|.+.+ |.+.+.|+|++..+..... ..+.....+.|.|.+++.+|+|.|+|.+.+.. +.....
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 55667899999999999987 7789999999987754321 12344455679999999999999999998654 445555
Q ss_pred EEEEEe
Q psy11701 210 VYVNVL 215 (745)
Q Consensus 210 ~~l~v~ 215 (745)
..|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 777765
No 190
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.07 E-value=9.9e-10 Score=84.61 Aligned_cols=76 Identities=26% Similarity=0.452 Sum_probs=56.9
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC-c----eeecCceEEEccCCCCCCEEEEEEEEeCCc--eEEEEEEE
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNP-R----RKVGPNRITIENLRKSDTGNYGCNATNSLG--YVYKDVYV 212 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~-~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g--~~~~~~~l 212 (745)
|++++|.|.+.+.|.+.+.|++.++......... . .....+.|.|.+++.+|+|.|+|.|+|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999999876433211100 1 111246899999999999999999998766 56666777
Q ss_pred EEe
Q psy11701 213 NVL 215 (745)
Q Consensus 213 ~v~ 215 (745)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 764
No 191
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.05 E-value=8.1e-10 Score=83.74 Aligned_cols=64 Identities=27% Similarity=0.463 Sum_probs=50.3
Q ss_pred EEEEEEEee-cCCCeeEEEECCEecCCC----CCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701 51 VELFCIFGG-TPLPQTIWSKDGVPINPS----DRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114 (745)
Q Consensus 51 ~~l~C~~~g-~p~~~v~W~~~~~~i~~~----~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 114 (745)
+.|.|.+.+ .|.+.++|+|+|+.|... .++... ...+.|.|.+++.+|+|.|+|.+.|..|...
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~ 71 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence 479999864 688899999999998642 222222 2346899999999999999999999988765
No 192
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.05 E-value=1.1e-09 Score=86.02 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=53.5
Q ss_pred CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccC-CC----CCCceee-----cCceEEEccCCCCCCEEEEEEEEe
Q psy11701 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ-AP----PNPRRKV-----GPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~-~~----~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
..+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. .. .+.++.. ....|.|.++..+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 3567889999999999999999999999998764310 00 1122221 246899999999999999999986
No 193
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.04 E-value=1e-09 Score=84.16 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=55.8
Q ss_pred cCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701 131 EPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~ 207 (745)
++....+.+|++++|.|.+.+ .+...+.|+|+|..+.. ......|.|.+++.+|+|.|+|.+.+..+...
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 344457899999999999854 55668999999987642 12346899999999999999999999887543
No 194
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.03 E-value=7e-10 Score=85.79 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=57.4
Q ss_pred ceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701 133 EFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 133 ~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
....+.+|+.+.|.|.. .|.|.+.+.|++++..+.......++.. .++.|.|.+|+.+|+|.|+|.|+|....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 34568899999999987 6789999999999876532222223333 4799999999999999999999987643
No 195
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.01 E-value=3.3e-09 Score=82.94 Aligned_cols=80 Identities=29% Similarity=0.527 Sum_probs=62.5
Q ss_pred eEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce--eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701 135 INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR--KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 135 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l 212 (745)
..+..|+.+.|.|.+.+.|.+.+.|++++..+......... ......|.|.++..+|+|.|+|.+.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 34668999999999999999999999999887633211111 1123479999999999999999999999988777766
Q ss_pred EE
Q psy11701 213 NV 214 (745)
Q Consensus 213 ~v 214 (745)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 53
No 196
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.01 E-value=1.9e-09 Score=81.75 Aligned_cols=69 Identities=23% Similarity=0.530 Sum_probs=52.7
Q ss_pred EEEEEEEee-cCCCeEEEEeCCEeccCCC-CCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701 143 VTFECKASG-LPEPEIHWVHNGKPISQAP-PNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211 (745)
Q Consensus 143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~-~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~ 211 (745)
+.|+|.+.+ .|.+.++|+++|+.+.... ...+... ..+.|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 469999864 6778999999999886432 1122211 2367999999999999999999999998776654
No 197
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.00 E-value=2.1e-09 Score=78.42 Aligned_cols=63 Identities=37% Similarity=0.710 Sum_probs=52.9
Q ss_pred cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701 47 RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 47 ~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
+|++++|.|.+.+.|.+.+.|++++..+. ...........|.|.+++.+|+|.|+|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 58999999999888888999999999887 3333345566899999999999999999987643
No 198
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.00 E-value=5.3e-09 Score=81.79 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=66.0
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceee--------cCceEEEccCCCCC-CEE
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKV--------GPNRITIENLRKSD-TGN 194 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d-~G~ 194 (745)
||.+ .......+.+|+++.|.|.+.+.|.| .|.|.+++..+..... .++.. ..+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~-~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTS-ERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCC-CCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 4544 55667788999999999999777776 7899998887764321 23322 23589999998866 799
Q ss_pred EEEEEEeCCceEEEEEEE
Q psy11701 195 YGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 195 Y~C~~~~~~g~~~~~~~l 212 (745)
|.|.|.|..|.....+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999998877655
No 199
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.00 E-value=2.7e-09 Score=83.16 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=59.1
Q ss_pred eEeeCCCeEEEEEEEee-----cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701 135 INAAEEETVTFECKASG-----LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD 209 (745)
Q Consensus 135 ~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~ 209 (745)
+.+.+|.++.|.|...+ +|.+.+.|+|+++++.... ......+.|.|.++..+|+|.|+|.+.|..+.....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~---~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR---KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc---cEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 45788999999998743 2577999999999987432 222367899999999999999999999988776554
Q ss_pred EEE
Q psy11701 210 VYV 212 (745)
Q Consensus 210 ~~l 212 (745)
+..
T Consensus 82 ~t~ 84 (92)
T cd05757 82 VTR 84 (92)
T ss_pred EEE
Confidence 433
No 200
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.98 E-value=1.8e-09 Score=84.48 Aligned_cols=84 Identities=32% Similarity=0.518 Sum_probs=69.6
Q ss_pred CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe
Q psy11701 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF 483 (745)
Q Consensus 404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~ 483 (745)
+|.++.+.. .+.+++.|.|+++. ..++.+.+|.|+|+...... ......+ ......++|.+|.|++.|.|+|+|.
T Consensus 2 ~P~~l~v~~-~~~~sv~v~W~~~~--~~~~~~~~y~v~~~~~~~~~-~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~v~a~ 76 (85)
T PF00041_consen 2 APENLSVSN-ISPTSVTVSWKPPS--SGNGPITGYRVEYRSVNSTS-DWQEVTV-PGNETSYTITGLQPGTTYEFRVRAV 76 (85)
T ss_dssp SSEEEEEEE-ECSSEEEEEEEESS--STSSSESEEEEEEEETTSSS-EEEEEEE-ETTSSEEEEESCCTTSEEEEEEEEE
T ss_pred cCcCeEEEE-CCCCEEEEEEECCC--CCCCCeeEEEEEEEecccce-eeeeeee-eeeeeeeeeccCCCCCEEEEEEEEE
Confidence 678999988 89999999999965 66788999999998776643 3445555 5556699999999999999999999
Q ss_pred cCCCCCCCC
Q psy11701 484 NGAYNGPPS 492 (745)
Q Consensus 484 n~~G~g~~S 492 (745)
|..|.|++|
T Consensus 77 ~~~g~g~~S 85 (85)
T PF00041_consen 77 NSDGEGPPS 85 (85)
T ss_dssp ETTEEEEEE
T ss_pred eCCcCcCCC
Confidence 999988664
No 201
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.98 E-value=1.3e-09 Score=84.09 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=61.7
Q ss_pred CeeEeeccceeEecCCcEEEEEE-EeecCCCeeEEEECCEe-cCCCCCeEeccCCcEEEEccCCCCCCE-EEEEEEEeCC
Q psy11701 34 KQQYVTRKKEVALRNKKVELFCI-FGGTPLPQTIWSKDGVP-INPSDRISQGNYGKSLIIKHVEFSDQG-SYTCEVSNGV 110 (745)
Q Consensus 34 ~~~~~~~~~~~v~~G~~~~l~C~-~~g~p~~~v~W~~~~~~-i~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~ 110 (745)
.......+.+.|.+|+.+.|.|. ..|.|.|.|.|++++.. +....|+..+.. +.|.|.+++.+|.| .|.|.|.+..
T Consensus 4 ~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 4 KWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC-ceEEEEEEehhhCCCCeEEEEEccc
Confidence 33334567789999999999998 59999999999987644 455667776554 68999999999999 7999998764
No 202
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.96 E-value=3.5e-09 Score=82.09 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=59.0
Q ss_pred eeEecCCcEEEEEEE-ee----cCCCeeEEEECCEecCCCC-CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE--
Q psy11701 43 EVALRNKKVELFCIF-GG----TPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK-- 114 (745)
Q Consensus 43 ~~v~~G~~~~l~C~~-~g----~p~~~v~W~~~~~~i~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-- 114 (745)
+.+..|.+..|.|.- .+ .+.+.++||||+++|.... ++.....+..|.|.++..+|+|.|+|.+.+..|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 457789999999974 33 3567999999999987543 344323456899999999999999999998755433
Q ss_pred -EEEEEEEE
Q psy11701 115 -SYSIDLSV 122 (745)
Q Consensus 115 -~~~~~l~V 122 (745)
++.+.|.|
T Consensus 85 vtr~~~l~v 93 (95)
T cd05897 85 ITRIIKLRI 93 (95)
T ss_pred EEEEEEEEE
Confidence 34445544
No 203
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.96 E-value=6.5e-09 Score=81.09 Aligned_cols=78 Identities=21% Similarity=0.413 Sum_probs=57.3
Q ss_pred ceeEecCCcEEEEEEEeecCCCeeEEEEC--CEe----cCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe-CCeeeE
Q psy11701 42 KEVALRNKKVELFCIFGGTPLPQTIWSKD--GVP----INPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN-GVGEAK 114 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~----i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~g~~~ 114 (745)
.+.+.+|++++|.|.. +.|.+.+.|+|+ +.. +....++.. .++.|.|.+++.+|+|.|+|.+.+ ..+...
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~ 81 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TERGLLLRSLQRSDAGVYTCTAVEHSFSQTL 81 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE--ecCeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence 4568899999999997 478889999983 222 112344443 335699999999999999999984 555455
Q ss_pred EEEEEEEEE
Q psy11701 115 SYSIDLSVL 123 (745)
Q Consensus 115 ~~~~~l~V~ 123 (745)
..+.|.|.
T Consensus 82 -~~~~l~v~ 89 (91)
T cd05871 82 -AKYTLHVI 89 (91)
T ss_pred -EEEEEEEe
Confidence 46777775
No 204
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.96 E-value=2.8e-09 Score=82.89 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=52.1
Q ss_pred eeEecCCcEEEEEEEeecCCCeeEEEECCEec-C-------------CCCCeEe-----ccCCcEEEEccCCCCCCEEEE
Q psy11701 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPI-N-------------PSDRISQ-----GNYGKSLIIKHVEFSDQGSYT 103 (745)
Q Consensus 43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i-~-------------~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~ 103 (745)
+.+.+|++|+|.|.+.+.+.+.+.|+++++.. . ...|+.. +.....|+|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45789999999999998898999999876332 1 1122221 122247999999999999999
Q ss_pred EEEEeCCee
Q psy11701 104 CEVSNGVGE 112 (745)
Q Consensus 104 C~~~~~~g~ 112 (745)
|.+.+..++
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999876654
No 205
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.95 E-value=6.7e-09 Score=82.69 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=58.2
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEECCEe-c-------CCCCCeEec---cCCcEEEEccCCCCCCEEEEEEEE
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVP-I-------NPSDRISQG---NYGKSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~-i-------~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
.+++..+.+|++++|.|.+.+.+.+.+.|++.+.. + ....|+... .....|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence 45778899999999999998888889999852211 1 113455442 223479999999999999999998
Q ss_pred eCCeeeEEEEEEEEE
Q psy11701 108 NGVGEAKSYSIDLSV 122 (745)
Q Consensus 108 ~~~g~~~~~~~~l~V 122 (745)
..... +..+.|+|
T Consensus 83 ~~~~~--~~~~~~~v 95 (95)
T cd05717 83 TMPVQ--TAKATVTV 95 (95)
T ss_pred cCCCc--eEEEEEEC
Confidence 75432 34445543
No 206
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.94 E-value=5e-09 Score=82.67 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=57.7
Q ss_pred cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEecc---C--CCCCCceee-----cCceEEEccCCCCCCEEEEEEEE
Q psy11701 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS---Q--APPNPRRKV-----GPNRITIENLRKSDTGNYGCNAT 200 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~---~--~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~ 200 (745)
.+.+..+.+|+++.|.|.+.+.|.+.+.|++.+..+. . .....++.. ...+|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 3567789999999999999999999999986432210 0 001223321 33689999999999999999998
Q ss_pred eCCceEEEEEEEE
Q psy11701 201 NSLGYVYKDVYVN 213 (745)
Q Consensus 201 ~~~g~~~~~~~l~ 213 (745)
+..+ ....+.|.
T Consensus 83 t~~~-~~~~~~l~ 94 (95)
T cd07701 83 TMPV-KTSKAYLT 94 (95)
T ss_pred eecC-ccEEEEEE
Confidence 7433 34445554
No 207
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.91 E-value=7.7e-09 Score=75.43 Aligned_cols=63 Identities=38% Similarity=0.759 Sum_probs=52.6
Q ss_pred CCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 139 ~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
+|+++.|.|.+.+.+.+.+.|++++..+. ...........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 58999999998888888999999998877 1223344567899999999999999999988654
No 208
>smart00409 IG Immunoglobulin.
Probab=98.91 E-value=2.4e-08 Score=78.28 Aligned_cols=82 Identities=33% Similarity=0.551 Sum_probs=66.1
Q ss_pred ccceeEecCCcEEEEEEEeecCCCeeEEEEC-CEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKD-GVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116 (745)
Q Consensus 40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~-~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 116 (745)
|....+.+|+++.|.|.+.+.+.+.+.|+++ ++.+....++...... .+|.|.+++.+|.|.|+|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 3456788999999999998887889999998 8888756666554443 689999999999999999999776665533
Q ss_pred EEEEEE
Q psy11701 117 SIDLSV 122 (745)
Q Consensus 117 ~~~l~V 122 (745)
+.|.|
T Consensus 81 -~~l~V 85 (86)
T smart00409 81 -TTLTV 85 (86)
T ss_pred -EEEEE
Confidence 66655
No 209
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.91 E-value=2.4e-08 Score=78.28 Aligned_cols=82 Identities=33% Similarity=0.551 Sum_probs=66.1
Q ss_pred ccceeEecCCcEEEEEEEeecCCCeeEEEEC-CEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKD-GVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116 (745)
Q Consensus 40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~-~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 116 (745)
|....+.+|+++.|.|.+.+.+.+.+.|+++ ++.+....++...... .+|.|.+++.+|.|.|+|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 3456788999999999998887889999998 8888756666554443 689999999999999999999776665533
Q ss_pred EEEEEE
Q psy11701 117 SIDLSV 122 (745)
Q Consensus 117 ~~~l~V 122 (745)
+.|.|
T Consensus 81 -~~l~V 85 (86)
T smart00410 81 -TTLTV 85 (86)
T ss_pred -EEEEE
Confidence 66655
No 210
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.90 E-value=1e-08 Score=79.05 Aligned_cols=78 Identities=37% Similarity=0.739 Sum_probs=59.4
Q ss_pred CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc-
Q psy11701 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG- 204 (745)
Q Consensus 126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g- 204 (745)
|.+...+ ..+.+|++++|.|.+.+.|...+.|++++..+... ...|.+.++..+|+|.|+|.+.+..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~g~y~C~~~~~~~~ 70 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS---------QNGLFIPNVSPEDSGNYTCRASNGSGS 70 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE---------SSEEEESSEEGGGTEEEEEEEEETTEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee---------eeeeeeeeeccccCEEEEEEEEeCCCC
Confidence 4444444 56899999999999999888999999999877622 22278899999999999999999654
Q ss_pred eEEEEEEEEE
Q psy11701 205 YVYKDVYVNV 214 (745)
Q Consensus 205 ~~~~~~~l~v 214 (745)
..+..+.|.|
T Consensus 71 ~~s~~~~v~V 80 (80)
T PF13895_consen 71 NTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEE
T ss_pred eEeeeEEeeC
Confidence 3344455544
No 211
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.89 E-value=1.1e-08 Score=79.00 Aligned_cols=75 Identities=29% Similarity=0.333 Sum_probs=53.7
Q ss_pred CCcEEEEEEEeecCC--CeeEEEECCEecCCC---C--CeEe---ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEE
Q psy11701 48 NKKVELFCIFGGTPL--PQTIWSKDGVPINPS---D--RISQ---GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS 117 (745)
Q Consensus 48 G~~~~l~C~~~g~p~--~~v~W~~~~~~i~~~---~--~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~ 117 (745)
|++++|.|.+.+.+. ..+.|.+.+..+... . +... ....+.|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~-~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK-NS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec-cc
Confidence 789999999987654 478999877643211 1 1111 11235899999999999999999999877555 55
Q ss_pred EEEEEE
Q psy11701 118 IDLSVL 123 (745)
Q Consensus 118 ~~l~V~ 123 (745)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 666664
No 212
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.88 E-value=1.5e-08 Score=76.60 Aligned_cols=65 Identities=25% Similarity=0.454 Sum_probs=55.5
Q ss_pred cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108 (745)
Q Consensus 41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (745)
+...+.+|+++.|.|...+. .+++.|++++.+|..+.++.....| |.|.+++.+|+|.|.|.+.-
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G--LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG--LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC--CEEEECCHhhCEEEEEEEec
Confidence 56789999999999999855 5599999999999877777655554 88999999999999999974
No 213
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.88 E-value=2.1e-08 Score=78.29 Aligned_cols=80 Identities=19% Similarity=0.427 Sum_probs=58.6
Q ss_pred eEeeCCCeEEEEEEEeecCCCeEEEEeCC--EeccCC-CCCCceeecCceEEEccCCCCCCEEEEEEEE-eCCceEEEEE
Q psy11701 135 INAAEEETVTFECKASGLPEPEIHWVHNG--KPISQA-PPNPRRKVGPNRITIENLRKSDTGNYGCNAT-NSLGYVYKDV 210 (745)
Q Consensus 135 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~-~~~g~~~~~~ 210 (745)
+...+|+++.|.|... .|.+.+.|++.+ ...... ....+.....+.|.|.++..+|+|.|+|.+. +..+.....+
T Consensus 6 ~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~ 84 (91)
T cd05871 6 VYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY 84 (91)
T ss_pred EEEecCCcEEEEEECC-CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence 4578999999999964 688899999843 222111 1123444556789999999999999999998 5666566667
Q ss_pred EEEEe
Q psy11701 211 YVNVL 215 (745)
Q Consensus 211 ~l~v~ 215 (745)
.|.|.
T Consensus 85 ~l~v~ 89 (91)
T cd05871 85 TLHVI 89 (91)
T ss_pred EEEEe
Confidence 77775
No 214
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.87 E-value=3.7e-09 Score=77.18 Aligned_cols=59 Identities=32% Similarity=0.586 Sum_probs=46.8
Q ss_pred CCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCCcE----EEEccCCCCCCEEEEEEE
Q psy11701 48 NKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKS----LIIKHVEFSDQGSYTCEV 106 (745)
Q Consensus 48 G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~ 106 (745)
|++++|.|.+ .+.+...+.|+|++..+...........+.. |.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 6677789999999887664444333333332 999999999999999986
No 215
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.84 E-value=3.1e-08 Score=76.95 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=53.6
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEECCEec--------CCCCCeEecc---CCcEEEEccCCCCCCEEEEEEEE
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI--------NPSDRISQGN---YGKSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i--------~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
..+++.+.+|++++|.|.+.+.....+.|++-+..+ ....|+.... ...+|+|++++.+|+|.|+|.+.
T Consensus 3 ~~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 3 VTEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred ccCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 346788999999999999987766667777644221 3456776443 22379999999999999999997
Q ss_pred eC
Q psy11701 108 NG 109 (745)
Q Consensus 108 ~~ 109 (745)
..
T Consensus 83 t~ 84 (95)
T cd05881 83 TD 84 (95)
T ss_pred cc
Confidence 53
No 216
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.84 E-value=2.3e-08 Score=77.46 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=60.7
Q ss_pred eeEeeCCCeEEEEEEE-e----------ecCCCeEEEEeCCEeccCCCC----CCceeecCceEEEccCCCCCCEEEEEE
Q psy11701 134 FINAAEEETVTFECKA-S----------GLPEPEIHWVHNGKPISQAPP----NPRRKVGPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~-~----------~~p~~~v~W~~~g~~~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
...+.+|+.+.|+|.. . ......+.|+|++..+..... ..+.......|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 3467899999999986 1 112348999999755543221 136666788999999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy11701 199 ATNSLGYVYKDVYVNV 214 (745)
Q Consensus 199 ~~~~~g~~~~~~~l~v 214 (745)
++|........+.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9998877766665543
No 217
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.83 E-value=2.8e-08 Score=76.82 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=56.7
Q ss_pred CCeEEEEEEEeecC--CCeEEEEeCCEeccCCCCCC--c-----eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701 140 EETVTFECKASGLP--EPEIHWVHNGKPISQAPPNP--R-----RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210 (745)
Q Consensus 140 G~~~~l~C~~~~~p--~~~v~W~~~g~~~~~~~~~~--~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~ 210 (745)
|+++.|.|.+.+.+ ...+.|.+.++.+....... + .....+.|.|.+++.+|+|.|+|.|.|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999998754 45889998776542211000 1 112346899999999999999999999988888888
Q ss_pred EEEEe
Q psy11701 211 YVNVL 215 (745)
Q Consensus 211 ~l~v~ 215 (745)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 87775
No 218
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.81 E-value=0.0013 Score=79.69 Aligned_cols=320 Identities=18% Similarity=0.184 Sum_probs=180.9
Q ss_pred EecCCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEE--EeCCeeeEEEEEEEE
Q psy11701 45 ALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV--SNGVGEAKSYSIDLS 121 (745)
Q Consensus 45 v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~--~~~~g~~~~~~~~l~ 121 (745)
+..|..+.|.=.. +|.+ ..+.|..++..-. .++.. ..+..+.|.|.-.+ .|..+... .+..+.
T Consensus 1797 ~~ag~~v~F~a~vstGsn-Vsw~W~f~~g~s~---------~gk~v---~~Tf~~aG~ytV~L~AsN~vs~~~-~s~~~~ 1862 (2740)
T TIGR00864 1797 FAADSSVCFQGELATGTN-VSWCWAIDGGSSK---------MGKHA---CMTFPDAGTFAIRLNASNAVSGKS-ASREFF 1862 (2740)
T ss_pred eecCcEEEEEEEccCCCe-eEEEEEeCCCCcc---------cccee---EEecCCCeEEEEEEEEEcccCcce-eeeeEE
Confidence 4455666555543 3332 2666766543211 11111 14558899997655 56655444 566788
Q ss_pred EEecC-eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEE--E
Q psy11701 122 VLAAP-YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC--N 198 (745)
Q Consensus 122 V~~~p-~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~ 198 (745)
|..++ .+........+..|+.++|.+.....+...+.|..++..-.... .+..+ .. ....-|.|.. .
T Consensus 1863 VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t-------~~~t~-~H--sY~~~G~Y~VtV~ 1932 (2740)
T TIGR00864 1863 AEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ-------PGPRF-SH--SFPRVDDHMVNLR 1932 (2740)
T ss_pred EEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec-------CCCeE-Ee--ecCCCCcEEEEEE
Confidence 88777 34555666678899999999999877888999998753221100 01111 11 2233455554 4
Q ss_pred EEeCCceEEEEEEEEEeecCCeeeeCCCce-EEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEccc
Q psy11701 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDE-YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277 (745)
Q Consensus 199 ~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~-~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~ 277 (745)
+.|..+.......+.|+..-..+.+...-. .+..|+..+|.-.+....+..+.|+.+-..+.++.........++...
T Consensus 1933 A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~- 2011 (2740)
T TIGR00864 1933 AKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA- 2011 (2740)
T ss_pred EEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc-
Confidence 557777777777777765222222222212 257799999999987666678999876443333222222222222222
Q ss_pred CCCCCEEEEE--EEEeCCceEEEEEEEEEeecceee-cCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCC
Q psy11701 278 AFADSGEYTC--FARNKLGTAQGSGSLTVKEHTHIT-DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES 354 (745)
Q Consensus 278 ~~~d~G~Y~C--~~~n~~g~~~~~~~l~v~~~p~~~-~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~ 354 (745)
...|.|.. .|.|..+.......+.|+.+.... ..........+..+.+.|.+...+. ++.+.|..++.......
T Consensus 2012 --~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~-~v~~~WDFGDGt~~~~T 2088 (2740)
T TIGR00864 2012 --EAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPN-FMACHWDFGDGSAGQDT 2088 (2740)
T ss_pred --CCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCC-cEEEEEEecCCCCcccc
Confidence 36788866 566877777666677776654211 1111123445778999998865433 48899998754332110
Q ss_pred CCeEEEcCCeEEEEecCCCCCCEEEE--EEEEeCCceEEEEEEEEEeccC
Q psy11701 355 EPRFVQSNDYSLTVTKSSELDSGQYT--CRAQTELDFIEAQATLTVQVPL 402 (745)
Q Consensus 355 ~~~~~~~~~~~l~i~~~~~~~~g~y~--c~a~n~~g~~~~~~~l~v~~pp 402 (745)
. ... +... -...|.|. ..|.|......+...+.|...+
T Consensus 2089 ~-------~~~--~sHt-Y~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~ 2128 (2740)
T TIGR00864 2089 D-------EPR--AEHE-YLHPGDYRVQVNASNLVSFFSAHAEINVQVLA 2128 (2740)
T ss_pred C-------Cce--eEEE-ecCCccEEEEEEEEcceeeeeeEEEEEEEEec
Confidence 0 001 1111 11235555 5677888777777777776554
No 219
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.80 E-value=2.7e-08 Score=73.99 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=49.4
Q ss_pred eEEEEEEEe-ecCCCeEEEEeCCEeccCCCC---CCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701 142 TVTFECKAS-GLPEPEIHWVHNGKPISQAPP---NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 142 ~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
.+.|+|... +.|+++|+||||+++|..... ........+.|.|.....+|++.|+|+|.|..+.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 378999995 589999999999999975321 1111123457999999999999999999998764
No 220
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.79 E-value=7.8e-08 Score=74.34 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=66.3
Q ss_pred ceeEeeCCCeEEEEEEEeecCCCe-EEEEeCCEeccCCCCCCceee------cCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701 133 EFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 133 ~~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~g~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
..+.+.+|+.+.|.|.++++|+|+ +.|.+++..+........... -.+.|.+..+..+|+|.|+|.|.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456789999999999999999996 999999887654332111111 1257999999999999999999999998
Q ss_pred EEEEEEEEEe
Q psy11701 206 VYKDVYVNVL 215 (745)
Q Consensus 206 ~~~~~~l~v~ 215 (745)
....+.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888877764
No 221
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.79 E-value=1.6e-08 Score=79.40 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=51.5
Q ss_pred cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
....|.+|++|+|+|... .+...+.|+|+|...... +.........|.|.+++.+|+|.|+|.+.+.
T Consensus 9 p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 9 PSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 356789999999999986 566689999998864421 1111233457999999999999999999875
No 222
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.79 E-value=2.2e-08 Score=77.97 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=51.2
Q ss_pred EeeCCCeEEEEEEEeecCCCeEEEEeCCEec-cC----------CCCCCcee-------ecCceEEEccCCCCCCEEEEE
Q psy11701 136 NAAEEETVTFECKASGLPEPEIHWVHNGKPI-SQ----------APPNPRRK-------VGPNRITIENLRKSDTGNYGC 197 (745)
Q Consensus 136 ~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~-~~----------~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C 197 (745)
.+.+|++++|.|.+.+.+.+.+.|+++++.. .. .....++. .+...|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4678999999999998888999999876332 11 11111111 123469999999999999999
Q ss_pred EEEeCCce
Q psy11701 198 NATNSLGY 205 (745)
Q Consensus 198 ~~~~~~g~ 205 (745)
.+.|..+.
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99887653
No 223
>PHA03376 BARF1; Provisional
Probab=98.77 E-value=1.6e-07 Score=79.27 Aligned_cols=122 Identities=20% Similarity=0.323 Sum_probs=78.0
Q ss_pred ceeEecCCcEEEEEEEeec---CCCeeEEEECC----Eec-------------CCCCCeEe--ccCCcEEEEccCCCCCC
Q psy11701 42 KEVALRNKKVELFCIFGGT---PLPQTIWSKDG----VPI-------------NPSDRISQ--GNYGKSLIIKHVEFSDQ 99 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g~---p~~~v~W~~~~----~~i-------------~~~~~~~~--~~~~~~L~i~~~~~~d~ 99 (745)
.+.+..|++++|.|..... +...|.|+|++ +.+ ....++.+ +.++-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 3457889999999998522 33379999953 111 01122333 12334899999999999
Q ss_pred EEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCE
Q psy11701 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164 (745)
Q Consensus 100 G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~ 164 (745)
|.|+|.+.....+.. +.-.|.+..|-.+.+.........-+...+.|.+.|+|.|.+.|.-+..
T Consensus 100 GtY~C~fQkge~~~~-k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCcee-eeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 999999987543333 3334444444333333322222235677899998889999999997643
No 224
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.77 E-value=2.5e-08 Score=74.14 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=47.5
Q ss_pred cEEEEEEE-eecCCCeeEEEECCEecCCCCCeEec----cCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 50 KVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQG----NYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 50 ~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
.+.|+|.. .|+|+++++||||+++|......... ...++|.|.....+|.+.|+|+|.|..+.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 37899999 66799999999999999743211110 11236999888889999999999997654
No 225
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.76 E-value=5.4e-08 Score=77.46 Aligned_cols=81 Identities=19% Similarity=0.316 Sum_probs=55.8
Q ss_pred CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEecc---CC--CCCCceee-----cCceEEEccCCCCCCEEEEEEEEe
Q psy11701 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS---QA--PPNPRRKV-----GPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~---~~--~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
+....+.+|++++|.|.+.+.+.+.+.|++.+..+. .. ....++.. ....|.|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 455678999999999999887888999986332210 00 01123322 235799999999999999999987
Q ss_pred CCceEEEEEEEE
Q psy11701 202 SLGYVYKDVYVN 213 (745)
Q Consensus 202 ~~g~~~~~~~l~ 213 (745)
... ....+.|.
T Consensus 84 ~~~-~~~~~~~~ 94 (95)
T cd05717 84 MPV-QTAKATVT 94 (95)
T ss_pred CCC-ceEEEEEE
Confidence 643 34444444
No 226
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.76 E-value=4.1e-08 Score=76.22 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=54.1
Q ss_pred eEeeCCCeEEEEEEE-ee----cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701 135 INAAEEETVTFECKA-SG----LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207 (745)
Q Consensus 135 ~~v~~G~~~~l~C~~-~~----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~ 207 (745)
+.+.+|.+..|.|.- .+ .+.+.++||||+.++...........+.+.|.|.++..+|+|.|+|.+.+..+...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 346789999999973 32 36679999999999874322211112456899999999999999999999866543
No 227
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.75 E-value=2.2e-08 Score=77.33 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=57.7
Q ss_pred CceeEeeCCCeEEEEEE-EeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCE-EEEEEEEeCCc
Q psy11701 132 PEFINAAEEETVTFECK-ASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTG-NYGCNATNSLG 204 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~-~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G-~Y~C~~~~~~g 204 (745)
.....+.+|+.+.|.|. ..|.|.+.|.|++++..... ...+... .++.|.|.+|+.+|+| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~--~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT--QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc--ccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 46678999999999998 58999999999987655332 2344444 5699999999999999 79999998753
No 228
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.75 E-value=6.6e-08 Score=73.13 Aligned_cols=64 Identities=20% Similarity=0.409 Sum_probs=53.7
Q ss_pred ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEE
Q psy11701 133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200 (745)
Q Consensus 133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 200 (745)
...++.+|+++.|.|...+ +.+.+.|+++|..+.. +.+.......|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~---~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNA---QFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCC---CcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 3467889999999999987 4669999999999863 24556666778899999999999999987
No 229
>KOG4802|consensus
Probab=98.72 E-value=2.1e-07 Score=88.10 Aligned_cols=187 Identities=15% Similarity=0.146 Sum_probs=113.0
Q ss_pred CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEE----EEEeccCCCCceeEEEEccCceeEEEecccccCcceeE
Q psy11701 403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKV----QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 478 (745)
Q Consensus 403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~ 478 (745)
.+|++.........+++.+.|..........-...+.. .......+...|..+.. ......+..+++.|+.-|+|
T Consensus 146 l~Pr~k~~y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~-t~~e~~~~~t~~rPgRwyef 224 (516)
T KOG4802|consen 146 LPPRPKILYFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEK-TMEENTYIFTDMRPGRWYEF 224 (516)
T ss_pred CCCcchhhhhhhccCceeeeeeeccccceeeeehhhhhhhcccccccccccccceeeee-cCCCceeeeeecCcceeEEE
Confidence 34444333222556678888987422110000000000 01122334455555555 55666888999999999999
Q ss_pred EEEEecCCCC---CCCCcceEEeCCCCCCCCCCceeEEEcCCc---eEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCc
Q psy11701 479 RVLAFNGAYN---GPPSEIISFVTPEGVPGTVQSLEAIPLGSS---AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPL 552 (745)
Q Consensus 479 ~V~a~n~~G~---g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~---~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~ 552 (745)
+|.|+|..|. +.+|.+....-.+.+|.+|.+++...+..+ ...|.|.|+. .+-+|..|.|.|..........+
T Consensus 225 rvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~-sdlPv~~Yki~Ws~~v~s~k~~m 303 (516)
T KOG4802|consen 225 RVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSK-SDLPVEKYKITWSLYVNSAKASM 303 (516)
T ss_pred EEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCC-CCCcceeeEEEeehhhhhhhhhc
Confidence 9999998765 566666666666677888888886655322 2446666554 46689999999975442211111
Q ss_pred ccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701 553 LERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593 (745)
Q Consensus 553 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~ 593 (745)
.+..-..-... .+.|.+|.|+..|-|.|.|....|.+..
T Consensus 304 ~tks~~~k~th--q~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 304 ITKSSYVKDTH--QFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred ccccceeeccc--hhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 11100011222 3449999999999999999998887665
No 230
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.71 E-value=1.5e-08 Score=73.85 Aligned_cols=59 Identities=31% Similarity=0.680 Sum_probs=44.1
Q ss_pred CCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceeecCc----eEEEccCCCCCCEEEEEEE
Q psy11701 140 EETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNA 199 (745)
Q Consensus 140 G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~~ 199 (745)
|++++|.|.+ .+.+...+.|++++..+....... ...... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN-RSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEE-EEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeE-eecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 667778999999987665221111 111112 2999999999999999986
No 231
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.70 E-value=2.4e-07 Score=71.65 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=64.8
Q ss_pred ccceeEecCCcEEEEEEEeecCCCe-eEEEECCEecCCCCC--eEecc-----CCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701 40 RKKEVALRNKKVELFCIFGGTPLPQ-TIWSKDGVPINPSDR--ISQGN-----YGKSLIIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 40 ~~~~~v~~G~~~~l~C~~~g~p~~~-v~W~~~~~~i~~~~~--~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
...+.|.+|+++.|.|.+..+|+|+ +.|.+++..+..... +.... ..+.|.+..+..+|.|.|+|.|.|...
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 3567799999999999999999997 999999887654322 32222 225799999999999999999999876
Q ss_pred eeEEEEEEEEEE
Q psy11701 112 EAKSYSIDLSVL 123 (745)
Q Consensus 112 ~~~~~~~~l~V~ 123 (745)
... .++.|.|.
T Consensus 90 ~~s-~tF~l~v~ 100 (101)
T cd05860 90 SAS-VTFNVYVN 100 (101)
T ss_pred eEE-EEEEEEEe
Confidence 655 55666653
No 232
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.70 E-value=0.0027 Score=77.06 Aligned_cols=324 Identities=14% Similarity=0.116 Sum_probs=192.7
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEEEECCE-ecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEE--EeCCeeeEE
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV-PINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV--SNGVGEAKS 115 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~-~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~--~~~~g~~~~ 115 (745)
..+...+..|++|+|.-...+....+++|...+. ...... .++. -+-...|.|...+ .|..|...
T Consensus 1703 ~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~--------p~~t---Htf~~~G~y~VtVta~N~vss~~- 1770 (2740)
T TIGR00864 1703 QASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSE--------PFMS---HSFPSAGLHLVTMKAFNELGSAN- 1770 (2740)
T ss_pred eccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCC--------CceE---EEccCCceEEEEEEEEccccccc-
Confidence 3345556779999998777666777999987542 111011 1111 1235579997765 46677665
Q ss_pred EEEEEEEEecCe-EEec---Ccee-EeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCC
Q psy11701 116 YSIDLSVLAAPY-FTVE---PEFI-NAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS 190 (745)
Q Consensus 116 ~~~~l~V~~~p~-~~~~---~~~~-~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~ 190 (745)
.++.|.|..+.. +... +... .+..|..+.|.-.+.......+.|.+++..-.. + ... ..+..
T Consensus 1771 ~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~---------g-k~v---~~Tf~ 1837 (2740)
T TIGR00864 1771 ASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM---------G-KHA---CMTFP 1837 (2740)
T ss_pred eeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc---------c-cee---EEecC
Confidence 567777776553 2221 1121 466788888888765445558889887542110 0 111 14667
Q ss_pred CCEEEEEEE--EeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEee
Q psy11701 191 DTGNYGCNA--TNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE 268 (745)
Q Consensus 191 d~G~Y~C~~--~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 268 (745)
++|.|+..+ .|..+....+..+.|+...-.+.+......+..|+.++|.+.....+...+.|..++..... ..
T Consensus 1838 ~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~-----~t 1912 (2740)
T TIGR00864 1838 DAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEV-----LQ 1912 (2740)
T ss_pred CCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCcee-----ec
Confidence 899998875 47777777777777876444555666666778899999999987777788999886532110 00
Q ss_pred cCcEEEcccCCCCCEEEE--EEEEeCCceEEEEEEEEEeecceeecCCC--cEEEecCCeEEEEEEEEecCCCCcEEEEe
Q psy11701 269 TGDLKITDVAFADSGEYT--CFARNKLGTAQGSGSLTVKEHTHITDQPE--DYEVEAGQSATFRCNAVSDPSLKLSIVWL 344 (745)
Q Consensus 269 ~~~l~i~~~~~~d~G~Y~--C~~~n~~g~~~~~~~l~v~~~p~~~~~p~--~~~~~~g~~~~l~C~~~~~~~~~~~i~W~ 344 (745)
.+.... -.....|.|. ..+.|..+.......+.|.++..-...+. ...+..|+..++.-.+....+ +.+.|+
T Consensus 1913 ~~~t~~--HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~--V~f~W~ 1988 (2740)
T TIGR00864 1913 PGPRFS--HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKP--VAFAWT 1988 (2740)
T ss_pred CCCeEE--eecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCc--eEEEEE
Confidence 111111 1223455564 56678888887777788876632221111 112567888999888876554 789998
Q ss_pred eCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEE--EEEEEEeCCceEEEEEEEEEeccC
Q psy11701 345 RGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ--YTCRAQTELDFIEAQATLTVQVPL 402 (745)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~--y~c~a~n~~g~~~~~~~l~v~~pp 402 (745)
.....+.. ...+ ......++... ...|. .+..|.|.+|.......+.|+.+.
T Consensus 1989 f~~~~~~g--~~~~-~~~G~~vty~~---~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i 2042 (2740)
T TIGR00864 1989 FDLHHLHG--DSLV-IHMGKDVSYTA---EAAGLLEIQLGAFNALGAENITLQLEAQDAL 2042 (2740)
T ss_pred eeecccCC--Ccce-eecCCceEEcc---CCCcEEEEEEEEEcccCcccccEEEEEEehe
Confidence 65333321 1111 11111222221 23454 456788998887777777776553
No 233
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.68 E-value=1.5e-07 Score=74.98 Aligned_cols=83 Identities=20% Similarity=0.156 Sum_probs=56.4
Q ss_pred eeccceeEecCCcEEEEEEEeecCCCeeEEEECCE-----ecC--------------CCCCeEeccCCcEEEEccCCCCC
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV-----PIN--------------PSDRISQGNYGKSLIIKHVEFSD 98 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~-----~i~--------------~~~~~~~~~~~~~L~i~~~~~~d 98 (745)
+++....+.+|++++|.|.........+.|+|... .|. -.+|..+.. +++|.|.+++.+|
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ngSL~I~~v~~~D 81 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NGSLLIQNVTQKD 81 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CCcEEEecCCccc
Confidence 44555668899999999976533444899999522 110 023333333 4589999999999
Q ss_pred CEEEEEEEEeCCeeeEEEEEEEE
Q psy11701 99 QGSYTCEVSNGVGEAKSYSIDLS 121 (745)
Q Consensus 99 ~G~Y~C~~~~~~g~~~~~~~~l~ 121 (745)
+|.|+|.+.+.........+.|.
T Consensus 82 ~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 82 TGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CEEEEEEEEeCCccEEEEEEEEE
Confidence 99999999987644443445544
No 234
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.68 E-value=1.1e-07 Score=73.73 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=52.1
Q ss_pred ceeEecCCcEEEEEEEe-----------ecCCCeeEEEECCEecCCCCC-----eEeccCCcEEEEccCCCCCCEEEEEE
Q psy11701 42 KEVALRNKKVELFCIFG-----------GTPLPQTIWSKDGVPINPSDR-----ISQGNYGKSLIIKHVEFSDQGSYTCE 105 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~-----------g~p~~~v~W~~~~~~i~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~ 105 (745)
...+.+|+++.|.|..- ..+...++|+|++..+..... ..+...+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 45688999999999961 112337999999765554331 23335567899999999999999999
Q ss_pred EEeCCe
Q psy11701 106 VSNGVG 111 (745)
Q Consensus 106 ~~~~~g 111 (745)
+.|...
T Consensus 89 ~rN~t~ 94 (104)
T cd05896 89 LRNSTY 94 (104)
T ss_pred ECCCCc
Confidence 988654
No 235
>PHA03376 BARF1; Provisional
Probab=98.67 E-value=3.6e-07 Score=77.29 Aligned_cols=123 Identities=21% Similarity=0.268 Sum_probs=75.9
Q ss_pred eeEeeCCCeEEEEEEEee---cCCCeEEEEeCCE----ec--------c--CCCCCCceee----cCceEEEccCCCCCC
Q psy11701 134 FINAAEEETVTFECKASG---LPEPEIHWVHNGK----PI--------S--QAPPNPRRKV----GPNRITIENLRKSDT 192 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~~~---~p~~~v~W~~~g~----~~--------~--~~~~~~~~~~----~~~~L~i~~v~~~d~ 192 (745)
.+....|+++.|+|.... .+...|.|+|.+. .+ . .-.+..+... ++-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 445678999999998762 2445899999421 11 0 0111222222 445899999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCE
Q psy11701 193 GNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK 257 (745)
Q Consensus 193 G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~ 257 (745)
|.|+|.+..........-.+.++. |-.+...........-+..++.|.+.++|.|.++|..+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~-~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeee-cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 999999997655444433333332 1111111111111124567899998889999999998654
No 236
>smart00409 IG Immunoglobulin.
Probab=98.67 E-value=2.3e-07 Score=72.55 Aligned_cols=81 Identities=32% Similarity=0.564 Sum_probs=61.5
Q ss_pred ceeEeeCCCeEEEEEEEeecCCCeEEEEeC-CEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701 133 EFINAAEEETVTFECKASGLPEPEIHWVHN-GKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATNSLGYVYKD 209 (745)
Q Consensus 133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~ 209 (745)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+...... ..... ...|.|.++...|+|.|.|.+.+..+.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRF-SVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcE-EEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 445678999999999998877889999998 7777521111 11112 3689999999999999999999887776666
Q ss_pred EEEEE
Q psy11701 210 VYVNV 214 (745)
Q Consensus 210 ~~l~v 214 (745)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66554
No 237
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.67 E-value=2.3e-07 Score=72.55 Aligned_cols=81 Identities=32% Similarity=0.564 Sum_probs=61.5
Q ss_pred ceeEeeCCCeEEEEEEEeecCCCeEEEEeC-CEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701 133 EFINAAEEETVTFECKASGLPEPEIHWVHN-GKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATNSLGYVYKD 209 (745)
Q Consensus 133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~ 209 (745)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+...... ..... ...|.|.++...|+|.|.|.+.+..+.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRF-SVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcE-EEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 445678999999999998877889999998 7777521111 11112 3689999999999999999999887776666
Q ss_pred EEEEE
Q psy11701 210 VYVNV 214 (745)
Q Consensus 210 ~~l~v 214 (745)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66554
No 238
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.65 E-value=1.4e-07 Score=74.87 Aligned_cols=74 Identities=23% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCcEEEEEEEeecCCCeeEEEECCEecCC------------------CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701 48 NKKVELFCIFGGTPLPQTIWSKDGVPINP------------------SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~------------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
|++|+|.|.........|.|+++...... ..|+.+... .+|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEcC
Confidence 89999999987655558999996533210 133444443 68999999999999999999987
Q ss_pred CeeeEEEEEEEEE
Q psy11701 110 VGEAKSYSIDLSV 122 (745)
Q Consensus 110 ~g~~~~~~~~l~V 122 (745)
.+......+.|.|
T Consensus 80 ~~~~~~~~~~l~v 92 (92)
T cd05741 80 NGVTENAKFFLRV 92 (92)
T ss_pred CCcEEEEEEEEEC
Confidence 7766666666653
No 239
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.61 E-value=2.3e-07 Score=71.43 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=50.3
Q ss_pred cEEEEEEEee-cCCCeeEEEECCEecCCCCCe-EeccCC------cEEEEccCCCCCCEEEEEEEEeCC-eeeEEEEEEE
Q psy11701 50 KVELFCIFGG-TPLPQTIWSKDGVPINPSDRI-SQGNYG------KSLIIKHVEFSDQGSYTCEVSNGV-GEAKSYSIDL 120 (745)
Q Consensus 50 ~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~-~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~-g~~~~~~~~l 120 (745)
.+.|+|.+.| .|.+.|+|+|+|++|...... .....+ +.|.|.....+|.|.|+|.|.+.. ......++.|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999987 588899999999998643221 111111 368888888888899999998753 2333455555
Q ss_pred EE
Q psy11701 121 SV 122 (745)
Q Consensus 121 ~V 122 (745)
.|
T Consensus 81 ~v 82 (82)
T cd05759 81 DV 82 (82)
T ss_pred cC
Confidence 43
No 240
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.59 E-value=5e-07 Score=73.70 Aligned_cols=74 Identities=24% Similarity=0.445 Sum_probs=53.4
Q ss_pred eeccceeEecCCcEEEEEEEeec----CCCeeEEE---------------ECCEecCC-----CCCeEec----cCCcEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGT----PLPQTIWS---------------KDGVPINP-----SDRISQG----NYGKSL 89 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~----p~~~v~W~---------------~~~~~i~~-----~~~~~~~----~~~~~L 89 (745)
..+..+.+..|++++|.|..... +..+|+|. ++|..... .+|+.+. ..+.+|
T Consensus 3 ~~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI 82 (116)
T cd05879 3 YTDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSI 82 (116)
T ss_pred EccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEE
Confidence 45677889999999999999653 34589993 23443321 1355442 234589
Q ss_pred EEccCCCCCCEEEEEEEEeCCe
Q psy11701 90 IIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 90 ~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
.|.+++.+|.|.|+|.+.+..+
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCC
Confidence 9999999999999999997543
No 241
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.56 E-value=1.7e-07 Score=74.46 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=58.5
Q ss_pred ecCCcEEEEEEEee-cCCCeeEEEECCEecC--C---------------CCCeEeccCCcEEEEccCCCCCCEEEEEEEE
Q psy11701 46 LRNKKVELFCIFGG-TPLPQTIWSKDGVPIN--P---------------SDRISQGNYGKSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 46 ~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~--~---------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
..|++|+|.|.... .....+.|+|....+- . .+|+.++..+.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998753 3344799998542211 0 1245555556789999999999999999999
Q ss_pred eCCeeeEEEEEEEEEE
Q psy11701 108 NGVGEAKSYSIDLSVL 123 (745)
Q Consensus 108 ~~~g~~~~~~~~l~V~ 123 (745)
...|......+.|.|+
T Consensus 82 ~~~~~~~~~~f~L~vy 97 (97)
T cd05775 82 TKNGVTITKEFTLHIY 97 (97)
T ss_pred cCCCCeEEEEEEEEeC
Confidence 8878887788888773
No 242
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.56 E-value=6.1e-07 Score=71.30 Aligned_cols=87 Identities=24% Similarity=0.486 Sum_probs=65.8
Q ss_pred CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA 583 (745)
Q Consensus 504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~ 583 (745)
|.+|.++.+......++.|.|.++....+.+.+|.|.|.......+.... ........+.+.+|.|++.|.|+|.
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~p~~~Y~~~v~ 75 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVE-----VTPGSETSYTLTGLKPGTEYEFRVR 75 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEee-----ccCCcccEEEEccccCCCEEEEEEE
Confidence 34566788877788999999999876546788999999876522222211 1013668899999999999999999
Q ss_pred EEecCCCCCCcc
Q psy11701 584 GYTKAGDGAESK 595 (745)
Q Consensus 584 a~n~~G~g~~S~ 595 (745)
|.+..|.|.++.
T Consensus 76 a~~~~~~~~~s~ 87 (93)
T cd00063 76 AVNGGGESPPSE 87 (93)
T ss_pred EECCCccCCCcc
Confidence 999988887754
No 243
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.54 E-value=6.1e-07 Score=71.60 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=52.7
Q ss_pred ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCE-----ec----cC-------CCCCCceee-cCceEEEccCCCCCC
Q psy11701 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK-----PI----SQ-------APPNPRRKV-GPNRITIENLRKSDT 192 (745)
Q Consensus 130 ~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~-----~~----~~-------~~~~~~~~~-~~~~L~i~~v~~~d~ 192 (745)
+.+.+..+.+|+++.|.|.........+.|+|+.. .+ .. .....+... .+++|.|.+++.+|+
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 44555678899999999976544445999999632 11 10 011223222 468999999999999
Q ss_pred EEEEEEEEeCCc
Q psy11701 193 GNYGCNATNSLG 204 (745)
Q Consensus 193 G~Y~C~~~~~~g 204 (745)
|.|+|.+.+...
T Consensus 83 G~Y~~~v~~~~~ 94 (105)
T cd05774 83 GFYTLQTITTNF 94 (105)
T ss_pred EEEEEEEEeCCc
Confidence 999999998763
No 244
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.50 E-value=5.9e-07 Score=73.85 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=54.5
Q ss_pred eeccceeEecCCcEEEEEEEeecCCCeeEEEECCE---ec-----------CCCCCeEecc----CCcEEEEccCCCCCC
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV---PI-----------NPSDRISQGN----YGKSLIIKHVEFSDQ 99 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~---~i-----------~~~~~~~~~~----~~~~L~i~~~~~~d~ 99 (745)
..|..+.+.+|++|+|.|.+.+.+...+.|+|... +. ....|+.+.. ...+|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 45667889999999999999877777999998431 10 1234554422 334899999999999
Q ss_pred EEEEEEEEeCC
Q psy11701 100 GSYTCEVSNGV 110 (745)
Q Consensus 100 G~Y~C~~~~~~ 110 (745)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998643
No 245
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.50 E-value=3.7e-07 Score=71.63 Aligned_cols=74 Identities=18% Similarity=0.363 Sum_probs=55.7
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS 202 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 202 (745)
.|.+...|. ..|.+|++++|+|... .+...+.|+|+|....... .........|.|.+++.+|+|.|+|...+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 356666665 3678999999999886 4677899999988654211 111223457999999999999999999875
No 246
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.48 E-value=1.3e-07 Score=71.66 Aligned_cols=69 Identities=33% Similarity=0.481 Sum_probs=45.8
Q ss_pred eeccceeEecCCcEEEEEEEeecC-CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTP-LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (745)
..+.......+. ++|.|.+.+.+ .+++.|+ +................+.|.|.++..+|.|.|+|.|.|
T Consensus 6 ~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 6 VPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 334444343344 99999998776 7799999 111111111122223456899999999999999999975
No 247
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.46 E-value=1.7e-06 Score=70.03 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=52.7
Q ss_pred cCCcEEEEEEEeecC------------CCeeEEEEC--CEe---cC----------C-CCCeEecc-----CCcEEEEcc
Q psy11701 47 RNKKVELFCIFGGTP------------LPQTIWSKD--GVP---IN----------P-SDRISQGN-----YGKSLIIKH 93 (745)
Q Consensus 47 ~G~~~~l~C~~~g~p------------~~~v~W~~~--~~~---i~----------~-~~~~~~~~-----~~~~L~i~~ 93 (745)
.|++|+|.|...... .+.|.|+|- ++. +. . .+|+++.. .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999996432 358999983 211 10 0 13555532 456999999
Q ss_pred CCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701 94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123 (745)
Q Consensus 94 ~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~ 123 (745)
++.+|+|.|+|.+.+...... ..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~-~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNY-DTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCce-eEEEEEEE
Confidence 999999999999986544433 55666665
No 248
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.46 E-value=8.1e-07 Score=68.36 Aligned_cols=62 Identities=21% Similarity=0.416 Sum_probs=45.7
Q ss_pred EEEEEEEee-cCCCeEEEEeCCEeccCCCCCCce------eecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNPRR------KVGPNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
+.|.|.+.| .|.+.++|+++|+.+......... ....+.|.|.....+|.|.|+|.|.|...
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 689999987 688899999999988643221111 11124688888888899999999998753
No 249
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.45 E-value=1e-06 Score=71.74 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=51.5
Q ss_pred EeeccceeEecCCcEEEEEEEeecC-CCeeEEEECC--Ee---cC---------CCCCeEeccC--CcEEEEccCCCCCC
Q psy11701 37 YVTRKKEVALRNKKVELFCIFGGTP-LPQTIWSKDG--VP---IN---------PSDRISQGNY--GKSLIIKHVEFSDQ 99 (745)
Q Consensus 37 ~~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~~--~~---i~---------~~~~~~~~~~--~~~L~i~~~~~~d~ 99 (745)
...|..+.+.+|++|+|.|.+.+.. ...+.|+|.. +. |. ...++..... ...|.|.+++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 4556778899999999999997654 5579999832 11 10 0134443222 23699999999999
Q ss_pred EEEEEEEEe
Q psy11701 100 GSYTCEVSN 108 (745)
Q Consensus 100 G~Y~C~~~~ 108 (745)
|.|.|.+.+
T Consensus 84 g~Y~Ca~~~ 92 (106)
T cd04980 84 AVYYCQQYG 92 (106)
T ss_pred EEEEEEEeC
Confidence 999999964
No 250
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.43 E-value=1.7e-06 Score=67.31 Aligned_cols=69 Identities=19% Similarity=0.359 Sum_probs=50.3
Q ss_pred ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEecc-----CCCCCCceee-----cCceEEEccCCCCCCEEEEEEEEe
Q psy11701 133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS-----QAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~-----~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
.+.++.+|++++|+|.+.+.....+.|++-+..+. ....+.++.. ...+|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 45678999999999999887677788987664331 0002223331 223699999999999999999975
No 251
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.43 E-value=2.2e-06 Score=69.84 Aligned_cols=77 Identities=25% Similarity=0.448 Sum_probs=53.7
Q ss_pred cCCcEEEEEEEeecC------CCeeEEEECCE---e-----cC----------CCCCeEecc---CCcEEEEccCCCCCC
Q psy11701 47 RNKKVELFCIFGGTP------LPQTIWSKDGV---P-----IN----------PSDRISQGN---YGKSLIIKHVEFSDQ 99 (745)
Q Consensus 47 ~G~~~~l~C~~~g~p------~~~v~W~~~~~---~-----i~----------~~~~~~~~~---~~~~L~i~~~~~~d~ 99 (745)
.|++|+|.|.....| ...|.|+|... + +. -..|+.+.. ...+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999986553 34799998531 0 10 013444421 234899999999999
Q ss_pred EEEEEEEEeCCeeeEEEEEEEEEEe
Q psy11701 100 GSYTCEVSNGVGEAKSYSIDLSVLA 124 (745)
Q Consensus 100 G~Y~C~~~~~~g~~~~~~~~l~V~~ 124 (745)
|.|+|.+.+..+... ..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~-~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDES-VVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceE-EEEEEEEEE
Confidence 999999988766554 667777753
No 252
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.42 E-value=1.7e-06 Score=71.12 Aligned_cols=74 Identities=27% Similarity=0.488 Sum_probs=51.0
Q ss_pred eeccceeEecCCcEEEEEEEeecC----CCeeEEEEC----CEe--c---C------CC----CCeEec----cCCcEEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTP----LPQTIWSKD----GVP--I---N------PS----DRISQG----NYGKSLI 90 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p----~~~v~W~~~----~~~--i---~------~~----~~~~~~----~~~~~L~ 90 (745)
..|+.+.+.+|++++|.|.....+ ...|.|++. +.+ + . .. +|+.+. ....+|+
T Consensus 3 ~~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~ 82 (115)
T cd05880 3 YTSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASIL 82 (115)
T ss_pred ecCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEE
Confidence 457788999999999999986433 236999751 111 1 0 01 223222 2345799
Q ss_pred EccCCCCCCEEEEEEEEeCCe
Q psy11701 91 IKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 91 i~~~~~~d~G~Y~C~~~~~~g 111 (745)
|.+++.+|+|.|+|.+.+..+
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 83 IWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred EeeCChhhCEEEEEEEEeCCC
Confidence 999999999999999987543
No 253
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.41 E-value=1.2e-06 Score=71.95 Aligned_cols=71 Identities=27% Similarity=0.385 Sum_probs=52.6
Q ss_pred eeccceeEecCCcEEEEEEEeecCCCeeEEEECC--EecC----------------CCCCeEecc---CCcEEEEccCCC
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPIN----------------PSDRISQGN---YGKSLIIKHVEF 96 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i~----------------~~~~~~~~~---~~~~L~i~~~~~ 96 (745)
..|....+.+|++++|.|...+ +...+.|||.. +.+. ...++.... ....|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 4567788999999999999987 66789999843 1110 023444322 235899999999
Q ss_pred CCCEEEEEEEEeC
Q psy11701 97 SDQGSYTCEVSNG 109 (745)
Q Consensus 97 ~d~G~Y~C~~~~~ 109 (745)
+|+|.|.|.+.+.
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 82 EDSAVYLCASSLG 94 (110)
T ss_pred hhCEEEEEEeeCC
Confidence 9999999999764
No 254
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.40 E-value=3.4e-06 Score=68.26 Aligned_cols=77 Identities=22% Similarity=0.384 Sum_probs=52.8
Q ss_pred CCCeEEEEEEEeecC------------CCeEEEEeC--CEe---cc--------CCCCCCceee-------cCceEEEcc
Q psy11701 139 EEETVTFECKASGLP------------EPEIHWVHN--GKP---IS--------QAPPNPRRKV-------GPNRITIEN 186 (745)
Q Consensus 139 ~G~~~~l~C~~~~~p------------~~~v~W~~~--g~~---~~--------~~~~~~~~~~-------~~~~L~i~~ 186 (745)
.|++++|.|...... .+.|.|+|. |+. +. ......|... ++.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986422 358999984 211 10 1112123332 467899999
Q ss_pred CCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 187 v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
++.+|+|.|+|.+.+........+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776666666666654
No 255
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.40 E-value=2.9e-07 Score=69.78 Aligned_cols=74 Identities=31% Similarity=0.592 Sum_probs=50.0
Q ss_pred cCeEEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701 125 APYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+ +...... ..........+.|.|.++..+|.|.|+|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~-~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN-SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE-EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee-eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 36666666655444444 99999998866 7799999 1111110 00111223457899999999999999999986
No 256
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.36 E-value=4.2e-06 Score=68.18 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=54.5
Q ss_pred CCCeEEEEEEEeecC------CCeEEEEeCC-----E-ecc---C------CCCCCcee-----ecCceEEEccCCCCCC
Q psy11701 139 EEETVTFECKASGLP------EPEIHWVHNG-----K-PIS---Q------APPNPRRK-----VGPNRITIENLRKSDT 192 (745)
Q Consensus 139 ~G~~~~l~C~~~~~p------~~~v~W~~~g-----~-~~~---~------~~~~~~~~-----~~~~~L~i~~v~~~d~ 192 (745)
.|++++|.|.....+ ...+.|+|.. . .+. . .....+.. .++.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987643 4599999962 1 110 0 00111111 1456899999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEEee
Q psy11701 193 GNYGCNATNSLGYVYKDVYVNVLA 216 (745)
Q Consensus 193 G~Y~C~~~~~~g~~~~~~~l~v~~ 216 (745)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998877777777777753
No 257
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.35 E-value=4.4e-06 Score=68.01 Aligned_cols=77 Identities=27% Similarity=0.483 Sum_probs=53.0
Q ss_pred cCCcEEEEEEEeecC------CCeeEEEECC-----E-ec--CCC----------CCeEe---ccCCcEEEEccCCCCCC
Q psy11701 47 RNKKVELFCIFGGTP------LPQTIWSKDG-----V-PI--NPS----------DRISQ---GNYGKSLIIKHVEFSDQ 99 (745)
Q Consensus 47 ~G~~~~l~C~~~g~p------~~~v~W~~~~-----~-~i--~~~----------~~~~~---~~~~~~L~i~~~~~~d~ 99 (745)
.|++|+|.|.....+ ...|.|+|.. . .+ ..+ .++.+ .....+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999986543 4589999862 1 11 011 11222 12345899999999999
Q ss_pred EEEEEEEEeCCeeeEEEEEEEEEEe
Q psy11701 100 GSYTCEVSNGVGEAKSYSIDLSVLA 124 (745)
Q Consensus 100 G~Y~C~~~~~~g~~~~~~~~l~V~~ 124 (745)
|.|+|.+.+..+... ..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~-~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQ-DTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceE-EEEEEEEEE
Confidence 999999998755433 667787754
No 258
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.35 E-value=1.3e-06 Score=68.79 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=49.3
Q ss_pred eeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCC--CeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (745)
..+....|.+|++|+|.|.... ....+.|+|+|....... ..........+.|.+++.+|+|.|+|....
T Consensus 5 ~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 5 SAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred EecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 3445667899999999998864 445899999886533110 000011233789999999999999999853
No 259
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.34 E-value=5.1e-06 Score=67.82 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=51.4
Q ss_pred CceeEeeCCCeEEEEEEEeec----CCCeEEEEe---------------CCEecc--CCCCCCcee------ecCceEEE
Q psy11701 132 PEFINAAEEETVTFECKASGL----PEPEIHWVH---------------NGKPIS--QAPPNPRRK------VGPNRITI 184 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~~----p~~~v~W~~---------------~g~~~~--~~~~~~~~~------~~~~~L~i 184 (745)
+....+..|+++.|.|..... +...+.|.+ +|.... ......|.. .++.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 556678899999999999653 235899933 333322 111122332 24568999
Q ss_pred ccCCCCCCEEEEEEEEeCCce
Q psy11701 185 ENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 185 ~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
.+++.+|.|.|+|.+.|..+.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCc
Confidence 999999999999999987653
No 260
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.33 E-value=6.1e-06 Score=67.19 Aligned_cols=78 Identities=24% Similarity=0.410 Sum_probs=54.1
Q ss_pred CCCeEEEEEEEeecC----------CCeEEEEeC--CEec-----------cCCCCCCceee-------cCceEEEccCC
Q psy11701 139 EEETVTFECKASGLP----------EPEIHWVHN--GKPI-----------SQAPPNPRRKV-------GPNRITIENLR 188 (745)
Q Consensus 139 ~G~~~~l~C~~~~~p----------~~~v~W~~~--g~~~-----------~~~~~~~~~~~-------~~~~L~i~~v~ 188 (745)
.|++++|+|.....+ ...+.|+|. ++.. .......+... +...|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999996533 257999984 2111 11112223332 34679999999
Q ss_pred CCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701 189 KSDTGNYGCNATNSLGYVYKDVYVNVLA 216 (745)
Q Consensus 189 ~~d~G~Y~C~~~~~~g~~~~~~~l~v~~ 216 (745)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998766667777777753
No 261
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.33 E-value=3.8e-06 Score=67.42 Aligned_cols=73 Identities=29% Similarity=0.465 Sum_probs=49.1
Q ss_pred CcEEEEEEEeecC---CCeeEEEECCEe----c-----------CC--CCCeEecc---CCcEEEEccCCCCCCEEEEEE
Q psy11701 49 KKVELFCIFGGTP---LPQTIWSKDGVP----I-----------NP--SDRISQGN---YGKSLIIKHVEFSDQGSYTCE 105 (745)
Q Consensus 49 ~~~~l~C~~~g~p---~~~v~W~~~~~~----i-----------~~--~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~ 105 (745)
++|+|.|.....+ ...|.|+|.... + .. ..|+.+.. ...+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999996554 337999995421 1 11 12333332 345899999999999999999
Q ss_pred EEe-CCeeeEEEEEEEEE
Q psy11701 106 VSN-GVGEAKSYSIDLSV 122 (745)
Q Consensus 106 ~~~-~~g~~~~~~~~l~V 122 (745)
+.. ..|... ..+.|.|
T Consensus 81 v~~~~~g~~~-~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQ-KVTTLTV 97 (98)
T ss_pred EEeCCCCcEE-EEEEEEe
Confidence 975 344444 6666666
No 262
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.33 E-value=4.8e-06 Score=67.00 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=49.0
Q ss_pred CCcEEEEEEEeecC---CCeeEEEECCE--ec---------CC------CCCeEec-----cCCcEEEEccCCCCCCEEE
Q psy11701 48 NKKVELFCIFGGTP---LPQTIWSKDGV--PI---------NP------SDRISQG-----NYGKSLIIKHVEFSDQGSY 102 (745)
Q Consensus 48 G~~~~l~C~~~g~p---~~~v~W~~~~~--~i---------~~------~~~~~~~-----~~~~~L~i~~~~~~d~G~Y 102 (745)
|++|+|.|...... ...+.|+|... .+ .. ..|+.+. ....+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999985332 22688887431 11 10 1344432 1235899999999999999
Q ss_pred EEEEEeCCeeeEEEEEEEEE
Q psy11701 103 TCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 103 ~C~~~~~~g~~~~~~~~l~V 122 (745)
+|.+.+..+. ....+.|.|
T Consensus 81 ~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEecCCcE-EEEEEEEEE
Confidence 9999976554 446566665
No 263
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.33 E-value=2.7e-06 Score=66.45 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=55.3
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEee-cCCCe--eEEEECCEecCCCCCeE----eccCCcEEEEccCCCCCCE-EEEE
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGG-TPLPQ--TIWSKDGVPINPSDRIS----QGNYGKSLIIKHVEFSDQG-SYTC 104 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g-~p~~~--v~W~~~~~~i~~~~~~~----~~~~~~~L~i~~~~~~d~G-~Y~C 104 (745)
|..+.+.+....+.+|+.++|+|.+.| .|.++ |.|||+++.|....... ......+|++ .+..+|.| .|+|
T Consensus 1 p~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~-~~~r~D~g~~~sC 79 (100)
T cd05755 1 PDSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITI-TVDREDHGANFSC 79 (100)
T ss_pred CceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEE-ecchhhCCcEEEE
Confidence 456677778888999999999999955 57775 79999999996432111 0111235666 46677777 8999
Q ss_pred EEEeCCe
Q psy11701 105 EVSNGVG 111 (745)
Q Consensus 105 ~~~~~~g 111 (745)
+|....+
T Consensus 80 ~A~l~l~ 86 (100)
T cd05755 80 ETELDLR 86 (100)
T ss_pred EEEeccC
Confidence 9987643
No 264
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.32 E-value=2e-06 Score=70.19 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=49.3
Q ss_pred eEecCCcEEEEEEEeec-CCCeeEEEECCE--e---c------------CCCCCeEecc----CCcEEEEccCCCCCCEE
Q psy11701 44 VALRNKKVELFCIFGGT-PLPQTIWSKDGV--P---I------------NPSDRISQGN----YGKSLIIKHVEFSDQGS 101 (745)
Q Consensus 44 ~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~--~---i------------~~~~~~~~~~----~~~~L~i~~~~~~d~G~ 101 (745)
.+.+|++++|.|.+.+. +...+.|+|... . + ....|+.... ...+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999866 566899998432 1 1 0123443322 23489999999999999
Q ss_pred EEEEEEeCCe
Q psy11701 102 YTCEVSNGVG 111 (745)
Q Consensus 102 Y~C~~~~~~g 111 (745)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987553
No 265
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.32 E-value=4.3e-06 Score=62.52 Aligned_cols=73 Identities=15% Similarity=0.294 Sum_probs=50.2
Q ss_pred EEEEEEEee-cCCCeEEEEeCCEeccCCCCC----CceeecCceEEEccCCCCCCEEEEEEEEeCCce-EEEEEEEEEe
Q psy11701 143 VTFECKASG-LPEPEIHWVHNGKPISQAPPN----PRRKVGPNRITIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVL 215 (745)
Q Consensus 143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~-~~~~~~l~v~ 215 (745)
+.|.|.+.| .|.+.|+|+++++++...... .......+.|.|..-..+|+..|+|+|.|+.-. ......|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999976 788899999999999754221 111223457888777777777899999986532 3333455544
No 266
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.31 E-value=4e-06 Score=69.40 Aligned_cols=74 Identities=28% Similarity=0.499 Sum_probs=50.3
Q ss_pred eeccceeEecCCcEEEEEEEeecC----CCeeEEEECCE------ec---------C-CC----CCeEecc----CCcEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTP----LPQTIWSKDGV------PI---------N-PS----DRISQGN----YGKSL 89 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p----~~~v~W~~~~~------~i---------~-~~----~~~~~~~----~~~~L 89 (745)
..|..+.+.+|++++|.|...... ...+.|++... .+ . .. .|+.+.. ...+|
T Consensus 3 ~~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 82 (116)
T cd05715 3 YTPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASI 82 (116)
T ss_pred ecCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEE
Confidence 456778899999999999985432 24699986211 11 0 01 2233221 23579
Q ss_pred EEccCCCCCCEEEEEEEEeCCe
Q psy11701 90 IIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 90 ~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
+|.+++.+|+|.|.|.+.+...
T Consensus 83 ~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 83 VIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EEeeCCcccCEEEEEEEEeCCC
Confidence 9999999999999999987533
No 267
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.31 E-value=7.5e-06 Score=61.23 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=48.9
Q ss_pred EEEEEEEee-cCCCeeEEEECCEecCCCCCeEecc-C----CcEEEEccCCCCCCE-EEEEEEEeCCeeeEEEEEEEEEE
Q psy11701 51 VELFCIFGG-TPLPQTIWSKDGVPINPSDRISQGN-Y----GKSLIIKHVEFSDQG-SYTCEVSNGVGEAKSYSIDLSVL 123 (745)
Q Consensus 51 ~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~~~~-~----~~~L~i~~~~~~d~G-~Y~C~~~~~~g~~~~~~~~l~V~ 123 (745)
+.|.|.+.| .|.+.|+|+|+++++.......... . .++|.| .++.+|.| .|+|+|.+..-......+.|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999955 5888999999999997543221111 1 136777 55555555 89999988643334566677765
Q ss_pred e
Q psy11701 124 A 124 (745)
Q Consensus 124 ~ 124 (745)
.
T Consensus 81 y 81 (82)
T cd05883 81 Y 81 (82)
T ss_pred E
Confidence 3
No 268
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.30 E-value=0.00012 Score=69.39 Aligned_cols=161 Identities=14% Similarity=0.191 Sum_probs=81.7
Q ss_pred cCceeEEEecccccCcceeEEEEEecCC-CCCCCCcceEEeCCCCCCCCCCcee-----EEEcCC-ce-EEEEeeCCC--
Q psy11701 459 KGESTTTEVDKFVPASKNFARVLAFNGA-YNGPPSEIISFVTPEGVPGTVQSLE-----AIPLGS-SA-FYLKWVKPE-- 528 (745)
Q Consensus 459 ~~~~~~~~i~~L~~~~~Y~~~V~a~n~~-G~g~~S~~~~~~t~~~~P~~p~~~~-----~~~~~~-~~-i~l~W~~p~-- 528 (745)
.+..+.++|.+|.|++.|.|.|.++|.. |.+..-....+.|.+....+|..|+ ...... .. -..+...|.
T Consensus 11 vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~ 90 (300)
T PF10179_consen 11 VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRS 90 (300)
T ss_pred cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCC
Confidence 4567889999999999999999999873 3332222233444333333343332 222221 12 334566441
Q ss_pred CCCCceeeE--------EEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceee-e
Q psy11701 529 QPNGVLMGY--------KIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF-Y 599 (745)
Q Consensus 529 ~~~g~i~~Y--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~-~ 599 (745)
.....+.-+ .|+....+.--... ........+.+.++.|+..|.+++.+.|... +..+..+. .
T Consensus 91 ~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~-------~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aa 162 (300)
T PF10179_consen 91 STHQSLWLFVQSCSGSVRVEISRNGKILLSQ-------KNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAA 162 (300)
T ss_pred CCCccEEEEEEeCCCeEEEEEEECCeEEeee-------ecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEe
Confidence 111111111 12221111110000 0123456899999999999999998876433 33333333 1
Q ss_pred cccCCCCCCCCCCC-----------CCcceeEEEeecCc
Q psy11701 600 VPFKNPDNVEGRGS-----------TPNNLVISWTAMPE 627 (745)
Q Consensus 600 ~~~~~~~~~~~~~~-----------~p~~~~v~W~~~~~ 627 (745)
.+.......+..|. .-++++|.|.+.+.
T Consensus 163 st~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d 201 (300)
T PF10179_consen 163 STNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPD 201 (300)
T ss_pred cCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCC
Confidence 11111122222222 22788999975544
No 269
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.29 E-value=1.1e-05 Score=59.91 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=53.3
Q ss_pred ceeEecCCcEEEEEEEeecC--CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701 42 KEVALRNKKVELFCIFGGTP--LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 119 (745)
+..+..|++++|+|.....+ .+.|+|...+...- ......+.+|.+..+...|+|.++|.+.....+. ...+.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~-~~~~~ 82 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK----QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEK-TLKLD 82 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc----eeccCCccEEEeceeCcccCCEEEEEEEECceEE-EEEee
Confidence 44688999999999995544 45999986544322 1112456789999999999999999998653222 24445
Q ss_pred EEE
Q psy11701 120 LSV 122 (745)
Q Consensus 120 l~V 122 (745)
|.|
T Consensus 83 V~V 85 (88)
T cd07694 83 IKV 85 (88)
T ss_pred EEE
Confidence 544
No 270
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.28 E-value=5.9e-06 Score=67.26 Aligned_cols=76 Identities=30% Similarity=0.490 Sum_probs=52.1
Q ss_pred CCcEEEEEEEeecC----------CCeeEEEEC--CEec------------CC--CCCeEec-----cCCcEEEEccCCC
Q psy11701 48 NKKVELFCIFGGTP----------LPQTIWSKD--GVPI------------NP--SDRISQG-----NYGKSLIIKHVEF 96 (745)
Q Consensus 48 G~~~~l~C~~~g~p----------~~~v~W~~~--~~~i------------~~--~~~~~~~-----~~~~~L~i~~~~~ 96 (745)
|++|+|.|.....+ ...|.|+|. +..+ .. .+|+.+. ....+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 89999999996543 247999984 2211 00 1344442 2345899999999
Q ss_pred CCCEEEEEEEEeCCeeeEEEEEEEEEEe
Q psy11701 97 SDQGSYTCEVSNGVGEAKSYSIDLSVLA 124 (745)
Q Consensus 97 ~d~G~Y~C~~~~~~g~~~~~~~~l~V~~ 124 (745)
+|+|.|.|.+........ ..+.|.|..
T Consensus 82 sD~G~Y~C~v~~~~~~~~-~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQ-DTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcce-EEEEEEEEE
Confidence 999999999987543333 567777754
No 271
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.27 E-value=5.5e-06 Score=71.11 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=60.4
Q ss_pred cceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecC----------C--CCCeEe---ccCCcEEEEccCCCCCCEEEEE
Q psy11701 41 KKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPIN----------P--SDRISQ---GNYGKSLIIKHVEFSDQGSYTC 104 (745)
Q Consensus 41 ~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~----------~--~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C 104 (745)
..++|.+|++|+|.|... +...+.++|+|..+.+. + .+|+.+ .....+|+|.+++.+|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 456789999999999984 55677999999643221 1 134442 2234689999999999999999
Q ss_pred EEEe-CCeeeEEEEEEEEEEec
Q psy11701 105 EVSN-GVGEAKSYSIDLSVLAA 125 (745)
Q Consensus 105 ~~~~-~~g~~~~~~~~l~V~~~ 125 (745)
.... ..|...+...-|.|...
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEecCCCCCceeEEEEEEEch
Confidence 9975 34534446667777654
No 272
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.26 E-value=1.1e-05 Score=67.07 Aligned_cols=85 Identities=24% Similarity=0.354 Sum_probs=59.2
Q ss_pred eeccceeEecCCcEEEEEEEe-ecCCCeeEEEECCE-----ecC----C----------CCCeEecc----CCcEEEEcc
Q psy11701 38 VTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGV-----PIN----P----------SDRISQGN----YGKSLIIKH 93 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~-----~i~----~----------~~~~~~~~----~~~~L~i~~ 93 (745)
..|..+.+.+|++++|.|... ......+.|++... .|. . ..++.+.. ...+|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 357888999999999999998 44556899998321 111 0 12233222 124799999
Q ss_pred CCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 94 ~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
++.+|+|.|.|.+...........+.|.|
T Consensus 86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp ESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999998874444445566654
No 273
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.23 E-value=3.8e-06 Score=68.92 Aligned_cols=73 Identities=16% Similarity=0.391 Sum_probs=52.3
Q ss_pred ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCE--ecc------------C-CCCCCceee-----cCceEEEccCCC
Q psy11701 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK--PIS------------Q-APPNPRRKV-----GPNRITIENLRK 189 (745)
Q Consensus 130 ~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~--~~~------------~-~~~~~~~~~-----~~~~L~i~~v~~ 189 (745)
..|....+.+|++++|.|.+.+ +...+.|||... .+. . .....++.. ....|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 4567788999999999999987 667899999532 110 0 111122221 245899999999
Q ss_pred CCCEEEEEEEEeCC
Q psy11701 190 SDTGNYGCNATNSL 203 (745)
Q Consensus 190 ~d~G~Y~C~~~~~~ 203 (745)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998653
No 274
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.23 E-value=5.6e-06 Score=66.23 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=46.2
Q ss_pred eEecCCcEEEEEEEeec--CCCeeEEEECC--EecC------------CCCCeEeccC--CcEEEEccCCCCCCEEEEEE
Q psy11701 44 VALRNKKVELFCIFGGT--PLPQTIWSKDG--VPIN------------PSDRISQGNY--GKSLIIKHVEFSDQGSYTCE 105 (745)
Q Consensus 44 ~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~~i~------------~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~ 105 (745)
.+.+|++|+|.|...+. ....+.|||.. .... ...++..... ...|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998754 44579999832 1111 0234443322 24799999999999999999
Q ss_pred EEe
Q psy11701 106 VSN 108 (745)
Q Consensus 106 ~~~ 108 (745)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 275
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.22 E-value=1e-05 Score=65.97 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=54.2
Q ss_pred CCCeEEEEEEEeecC------CCeEEEEeCCE----e----ccC-------CCCCCceee-----cCceEEEccCCCCCC
Q psy11701 139 EEETVTFECKASGLP------EPEIHWVHNGK----P----ISQ-------APPNPRRKV-----GPNRITIENLRKSDT 192 (745)
Q Consensus 139 ~G~~~~l~C~~~~~p------~~~v~W~~~g~----~----~~~-------~~~~~~~~~-----~~~~L~i~~v~~~d~ 192 (745)
.|++++|.|.....| ...+.|+|... . +.. .....+... ...+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999986542 34799999531 0 000 111123332 134799999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEEe
Q psy11701 193 GNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 193 G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
|.|+|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988877777777775
No 276
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.22 E-value=7e-06 Score=64.19 Aligned_cols=76 Identities=20% Similarity=0.347 Sum_probs=51.6
Q ss_pred EecCceeEeeCCCeEEEEEEEee-cCCCe--EEEEeCCEeccCCCCCC---ceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701 129 TVEPEFINAAEEETVTFECKASG-LPEPE--IHWVHNGKPISQAPPNP---RRKVGPNRITIENLRKSDTGNYGCNATNS 202 (745)
Q Consensus 129 ~~~~~~~~v~~G~~~~l~C~~~~-~p~~~--v~W~~~g~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 202 (745)
.+.+....+.+|+.++|+|.+.| .|.+. |.||++++.+....... .......+|.+..-..+|.-.|+|+|.+.
T Consensus 5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD 84 (100)
T ss_pred EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence 34445556789999999999976 67775 79999999997533221 11112356777655555555899999876
Q ss_pred Cc
Q psy11701 203 LG 204 (745)
Q Consensus 203 ~g 204 (745)
.+
T Consensus 85 l~ 86 (100)
T cd05755 85 LR 86 (100)
T ss_pred cC
Confidence 53
No 277
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.20 E-value=9.2e-06 Score=62.59 Aligned_cols=80 Identities=25% Similarity=0.429 Sum_probs=55.0
Q ss_pred CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701 506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY 585 (745)
Q Consensus 506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~ 585 (745)
+|.++.+.....+++.|+|++|...++ .+|.++|..........+.... . ......+.+.+|.|++.|.|+|.|.
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVN--V-TPSSTSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEE--e-cCCccEEEEeCcCCCCEEEEEEEEE
Confidence 445677777777799999997765443 7888888765433211111111 1 1225789999999999999999999
Q ss_pred ecCCC
Q psy11701 586 TKAGD 590 (745)
Q Consensus 586 n~~G~ 590 (745)
+..|.
T Consensus 78 ~~~g~ 82 (83)
T smart00060 78 NGAGE 82 (83)
T ss_pred cccCC
Confidence 97654
No 278
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.20 E-value=0.0012 Score=64.94 Aligned_cols=220 Identities=19% Similarity=0.202 Sum_probs=128.3
Q ss_pred CcccCCCCCeeEeeccceeEecCCcEEEEEEEeecCC---CeeE-EEE-----------CCEec-C-----CCCC-----
Q psy11701 26 ASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPL---PQTI-WSK-----------DGVPI-N-----PSDR----- 79 (745)
Q Consensus 26 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~---~~v~-W~~-----------~~~~i-~-----~~~~----- 79 (745)
++++.++|-.+.-...+..+.-|+.+.+.|.+.-... ..++ |++ |.+.+ . .+..
T Consensus 81 ~~~p~s~~~~~~C~~~~vsa~Y~~~v~i~C~v~~~~~~~~~RLeiWf~~r~rf~~~~~gd~e~~vn~~~p~~~g~Llf~s 160 (486)
T PHA03273 81 ASQPHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYSEYRLEIYLNQRTPFSGTPPGDEENYVNHNATKDQTLLLFST 160 (486)
T ss_pred CCCCCCCCcceEecCcccccccccceEEeecccCCCCCcceEEEEEEccccccccCCCCCcccccCCCCCCCCCEEEEec
Confidence 3666677777888888889999999999999632211 2233 853 11111 0 0000
Q ss_pred ----e-----------------------Eecc-CC--cEEEEccCCCCCCEEEEEEEEeCCeeeE-EEEEEEEEEecCeE
Q psy11701 80 ----I-----------------------SQGN-YG--KSLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYF 128 (745)
Q Consensus 80 ----~-----------------------~~~~-~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~l~V~~~p~~ 128 (745)
+ ..+. .+ -.|+|..++..++|.|+=...+..+... ...+.|....+|.+
T Consensus 161 a~~s~~~r~~~~~gi~p~~~p~y~l~~~p~~p~~~~~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psv 240 (486)
T PHA03273 161 AERSVKSRRGGQLGVIPDRLPKRQLFNLPLHTEGGTKFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLV 240 (486)
T ss_pred CCCccccccccccccccccccchhhccCCCCCCCCCccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcc
Confidence 1 0010 11 2499999999999999877766544333 34456666889988
Q ss_pred EecCceeEeeCCCeEEEEEEEee-cCC--CeEEEEeCCEeccC-CCCCCcee-ec------CceEEEccCCC-CCCEEEE
Q psy11701 129 TVEPEFINAAEEETVTFECKASG-LPE--PEIHWVHNGKPISQ-APPNPRRK-VG------PNRITIENLRK-SDTGNYG 196 (745)
Q Consensus 129 ~~~~~~~~v~~G~~~~l~C~~~~-~p~--~~v~W~~~g~~~~~-~~~~~~~~-~~------~~~L~i~~v~~-~d~G~Y~ 196 (745)
.+.+.. +.+|+...-.|.+.. +|. ..+.|+.||.++.. ........ .. .++|.+..... +..=..+
T Consensus 241 sv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lr 318 (486)
T PHA03273 241 DLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLR 318 (486)
T ss_pred cccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCce
Confidence 777664 789999999999977 444 38999999999872 22122222 11 22344443222 2233699
Q ss_pred EEEEe-CCceEEEE----EEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC--CeEEEeeCC
Q psy11701 197 CNATN-SLGYVYKD----VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK--PEVNWIHNQ 256 (745)
Q Consensus 197 C~~~~-~~g~~~~~----~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~--~~i~W~~~~ 256 (745)
|.+.- ..+..... +.-.|. .+|.+.+ ....|. ..|.+.-.|. ..+.|..++
T Consensus 319 C~v~W~rd~vS~~RfsAt~~P~Vy-~~P~Is~-----~F~~G~---AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 319 CSIEWYRDEVSFARIAKAGTPSVF-VAPTVSV-----TVEDGD---AVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EEEEEccCCcceeeccccccCccc-cCCeEEE-----EEeCCE---EEEecccccCCCeeEEEEccC
Confidence 99873 33322222 112222 3444432 233333 3355544443 689998876
No 279
>KOG4802|consensus
Probab=98.19 E-value=6.3e-06 Score=78.43 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=70.4
Q ss_pred cceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCc-------------ceeEEEeecCcccc
Q psy11701 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPN-------------NLVISWTAMPEIEH 630 (745)
Q Consensus 564 ~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~-------------~~~v~W~~~~~~~~ 630 (745)
...+++.+++||..|+|+|+|+|..|.--+|+++. ......+..++| +|+ ++.|-|-|+++
T Consensus 208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSk--pf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~s--- 281 (516)
T KOG4802|consen 208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSK--PFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSKS--- 281 (516)
T ss_pred CceeeeeecCcceeEEEEEeeeecccccccCCCCC--CCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCCC---
Confidence 34788999999999999999999876544443321 112222222222 222 24556655443
Q ss_pred CCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccc
Q psy11701 631 NAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFV 710 (745)
Q Consensus 631 ~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 710 (745)
+-+|..|.|.|.-....... . ......|.. +...+.|.+|.
T Consensus 282 dlPv~~Yki~Ws~~v~s~k~--~--------------m~tks~~~k-----------------------~thq~si~~L~ 322 (516)
T KOG4802|consen 282 DLPVEKYKITWSLYVNSAKA--S--------------MITKSSYVK-----------------------DTHQFSIKELL 322 (516)
T ss_pred CCcceeeEEEeehhhhhhhh--h--------------cccccceee-----------------------ccchhhhhhcC
Confidence 34678888888743211100 0 001111211 22234488999
Q ss_pred cCCcceeEEEEecCcccCCC
Q psy11701 711 PASKNFARVLAFNGAYNGPP 730 (745)
Q Consensus 711 p~~~Y~~~v~A~~~~G~g~~ 730 (745)
|+..|.+.|.|...-|.+..
T Consensus 323 Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 323 PNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred CCCeEEEEEEEEEeccCccc
Confidence 99999999999887776543
No 280
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.17 E-value=1.7e-05 Score=63.85 Aligned_cols=75 Identities=24% Similarity=0.344 Sum_probs=49.2
Q ss_pred CCeEEEEEEEeecC---CCeEEEEeCCE--ec---------cC---CCCCCceee-------cCceEEEccCCCCCCEEE
Q psy11701 140 EETVTFECKASGLP---EPEIHWVHNGK--PI---------SQ---APPNPRRKV-------GPNRITIENLRKSDTGNY 195 (745)
Q Consensus 140 G~~~~l~C~~~~~p---~~~v~W~~~g~--~~---------~~---~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y 195 (745)
|++++|.|...... ...+.|+|... .+ .. .....+... +..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999986322 23788988541 11 00 001122221 235799999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy11701 196 GCNATNSLGYVYKDVYVNV 214 (745)
Q Consensus 196 ~C~~~~~~g~~~~~~~l~v 214 (745)
+|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776666566654
No 281
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.17 E-value=2.4e-05 Score=61.04 Aligned_cols=73 Identities=29% Similarity=0.518 Sum_probs=49.2
Q ss_pred CcEEEEEEEeec-CCCeeEEEECC----EecC-----------C--CCCeEec---cCCcEEEEccCCCCCCEEEEEEEE
Q psy11701 49 KKVELFCIFGGT-PLPQTIWSKDG----VPIN-----------P--SDRISQG---NYGKSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 49 ~~~~l~C~~~g~-p~~~v~W~~~~----~~i~-----------~--~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
++++|.|..... ...+|+|.|.. ..+. . .+|+.+. ..+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999998643 23389998832 1221 0 1344442 235689999999999999999987
Q ss_pred eC-CeeeEEEEEEEEE
Q psy11701 108 NG-VGEAKSYSIDLSV 122 (745)
Q Consensus 108 ~~-~g~~~~~~~~l~V 122 (745)
.- .|... .+..|.|
T Consensus 81 tfP~G~~~-~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQ-SSTTVTV 95 (96)
T ss_pred eCCCCCee-EEEEEEE
Confidence 54 55544 6677766
No 282
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.16 E-value=1.2e-05 Score=63.71 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=47.8
Q ss_pred CCeEEEEEEEeecCCCeEEEEeCCEeccC---------------CCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 140 EETVTFECKASGLPEPEIHWVHNGKPISQ---------------APPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~---------------~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
|++|+|.|.........+.|+|+...... .....+... .+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 88999999887655669999997543211 111122222 45789999999999999999998776
Q ss_pred ce
Q psy11701 204 GY 205 (745)
Q Consensus 204 g~ 205 (745)
+.
T Consensus 81 ~~ 82 (92)
T cd05741 81 GV 82 (92)
T ss_pred Cc
Confidence 43
No 283
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.16 E-value=2.3e-05 Score=58.26 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=55.7
Q ss_pred eeEeeCCCeEEEEEEEee--cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701 134 FINAAEEETVTFECKASG--LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~ 211 (745)
+..+..|++++|+|.... .|.+.++|...+...-. ....+..+|.+..+...|+|.++|.+............
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 446889999999999955 34559999975543221 11234568999999999999999999866555555555
Q ss_pred EEEe
Q psy11701 212 VNVL 215 (745)
Q Consensus 212 l~v~ 215 (745)
|.|.
T Consensus 83 V~Vl 86 (88)
T cd07694 83 IKVL 86 (88)
T ss_pred EEEE
Confidence 5554
No 284
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.16 E-value=2.2e-05 Score=62.09 Aligned_cols=88 Identities=27% Similarity=0.508 Sum_probs=64.2
Q ss_pred CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701 403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA 482 (745)
Q Consensus 403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a 482 (745)
.+|.++.+.. ....++.+.|+++.... +.+.+|.|.++... ...+..+.........+.+.+|.+++.|.|+|+|
T Consensus 2 ~~p~~~~~~~-~~~~~~~v~W~~~~~~~--~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 2 SPPTNLRVTD-VTSTSVTLSWTPPEDDG--GPITGYVVEYREKG--SGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred cCCCCcEEEE-ecCCEEEEEECCCCCCC--CcceeEEEEEeeCC--CCCCEEeeccCCcccEEEEccccCCCEEEEEEEE
Confidence 4677777766 66799999999864332 55778999887654 2233333331136788999999999999999999
Q ss_pred ecCCCCCCCCcce
Q psy11701 483 FNGAYNGPPSEII 495 (745)
Q Consensus 483 ~n~~G~g~~S~~~ 495 (745)
.+..|.|.++...
T Consensus 77 ~~~~~~~~~s~~~ 89 (93)
T cd00063 77 VNGGGESPPSESV 89 (93)
T ss_pred ECCCccCCCcccc
Confidence 9988888776533
No 285
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.15 E-value=1.4e-05 Score=61.21 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=40.7
Q ss_pred EEEEEEEeec-CCCeeEEEECCEecCCCCCeEeccCCc------EEEEccCCCCCCEEEEEEEEeCCe
Q psy11701 51 VELFCIFGGT-PLPQTIWSKDGVPINPSDRISQGNYGK------SLIIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 51 ~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
+.|.|.+.|. |.+.|.|+|++++|...........++ .|.+.....++.+.|+|+|.+...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 6899999665 888999999999987433222212222 355544444555699999987643
No 286
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.15 E-value=5.5e-06 Score=65.80 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=52.5
Q ss_pred eCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCC--------------CCceee--cCceEEEccCCCCCCEEEEEEEE
Q psy11701 138 AEEETVTFECKASG-LPEPEIHWVHNGKPISQAPP--------------NPRRKV--GPNRITIENLRKSDTGNYGCNAT 200 (745)
Q Consensus 138 ~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~--------------~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~ 200 (745)
..|++|+|.|.... .....+.|+|....+..... ..+... .+.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46999999998754 44458999987543221110 112222 24689999999999999999999
Q ss_pred eCCceE-EEEEEEEE
Q psy11701 201 NSLGYV-YKDVYVNV 214 (745)
Q Consensus 201 ~~~g~~-~~~~~l~v 214 (745)
...|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 876654 34455554
No 287
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.15 E-value=6e-06 Score=65.82 Aligned_cols=66 Identities=23% Similarity=0.409 Sum_probs=48.8
Q ss_pred ecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701 46 LRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNGVG 111 (745)
Q Consensus 46 ~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~g 111 (745)
..|+.++|.|.+.|+ |. ..|+|++||..+..... .....++ +.|.|.....+|.|.|+|+|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 579999999999988 64 58999999999875542 1111222 2466766667799999999987643
No 288
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.13 E-value=7.4e-06 Score=68.05 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=51.3
Q ss_pred eccceeEecCCcEEEEEEEee--cCCCeeEEEEC--CEec------C-----------CCCCeEecc----CCcEEEEcc
Q psy11701 39 TRKKEVALRNKKVELFCIFGG--TPLPQTIWSKD--GVPI------N-----------PSDRISQGN----YGKSLIIKH 93 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g--~p~~~v~W~~~--~~~i------~-----------~~~~~~~~~----~~~~L~i~~ 93 (745)
.|..+.+.+|++|+|.|.+.+ .+.+.+.|+|. +..+ . ...|+.+.. ....|+|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 456677899999999999977 56778999983 2211 0 123454432 234799999
Q ss_pred CCCCCCEEEEEEEEe
Q psy11701 94 VEFSDQGSYTCEVSN 108 (745)
Q Consensus 94 ~~~~d~G~Y~C~~~~ 108 (745)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999964
No 289
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.12 E-value=2e-05 Score=60.24 Aligned_cols=60 Identities=22% Similarity=0.405 Sum_probs=40.9
Q ss_pred EEEEEEEeec-CCCeeEEEECCEecCCCCC-eEeccCCc------EEEEccCCCCCCEEEEEEEEeCC
Q psy11701 51 VELFCIFGGT-PLPQTIWSKDGVPINPSDR-ISQGNYGK------SLIIKHVEFSDQGSYTCEVSNGV 110 (745)
Q Consensus 51 ~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~-~~~~~~~~------~L~i~~~~~~d~G~Y~C~~~~~~ 110 (745)
++|+|.+.|. |.+.|+|++||++|..... ......++ .|.|.....+|...|+|+|.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 6899999775 8889999999999875432 22222322 34443344455569999998764
No 290
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.11 E-value=2.4e-05 Score=62.29 Aligned_cols=75 Identities=28% Similarity=0.291 Sum_probs=48.2
Q ss_pred CCcEEEEEEEeecCC-CeeEEEECCE----ecC-----C--------CCCeEe---ccCCcEEEEccCCCCCCEEEEEEE
Q psy11701 48 NKKVELFCIFGGTPL-PQTIWSKDGV----PIN-----P--------SDRISQ---GNYGKSLIIKHVEFSDQGSYTCEV 106 (745)
Q Consensus 48 G~~~~l~C~~~g~p~-~~v~W~~~~~----~i~-----~--------~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (745)
|++|+|.|....... ..|.|+|... .|. . .+|+.+ .....+|+|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998754332 2699998421 110 0 112222 123458999999999999999999
Q ss_pred EeCCeeeEEEEEEEEE
Q psy11701 107 SNGVGEAKSYSIDLSV 122 (745)
Q Consensus 107 ~~~~g~~~~~~~~l~V 122 (745)
........+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7543333435566665
No 291
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.11 E-value=1.4e-05 Score=65.64 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=53.1
Q ss_pred eCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEE---------------ccCceEEEee-----cCcEEEcccCCCCC
Q psy11701 223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE---------------LTGGRYTILE-----TGDLKITDVAFADS 282 (745)
Q Consensus 223 ~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~---------------~~~~~~~~~~-----~~~l~i~~~~~~d~ 282 (745)
..|..+.+.+|++++|.|.+.+.+...+.|++.... ...+++.... ...|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 345677889999999999998776778999984311 1234444432 23699999999999
Q ss_pred EEEEEEEEeCC
Q psy11701 283 GEYTCFARNKL 293 (745)
Q Consensus 283 G~Y~C~~~n~~ 293 (745)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998654
No 292
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.11 E-value=4e-05 Score=60.52 Aligned_cols=74 Identities=27% Similarity=0.548 Sum_probs=49.2
Q ss_pred CcEEEEEEEeec-CCC---eeEEEECC--E--ec-----------CC--CCCeEecc---CCcEEEEccCCCCCCEEEEE
Q psy11701 49 KKVELFCIFGGT-PLP---QTIWSKDG--V--PI-----------NP--SDRISQGN---YGKSLIIKHVEFSDQGSYTC 104 (745)
Q Consensus 49 ~~~~l~C~~~g~-p~~---~v~W~~~~--~--~i-----------~~--~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C 104 (745)
.+|+|.|..... |.. +|.|.+.. . .+ .. .+|+.+.. .+.+|.|.+++.+|+|.|+|
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 368999999632 211 69998731 1 11 00 23444432 24689999999999999999
Q ss_pred EEEe-CCeeeEEEEEEEEEE
Q psy11701 105 EVSN-GVGEAKSYSIDLSVL 123 (745)
Q Consensus 105 ~~~~-~~g~~~~~~~~l~V~ 123 (745)
.+.+ ..|. .+..+.|.|.
T Consensus 81 ~v~t~P~g~-~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGN-RESQLNLTVY 99 (99)
T ss_pred EEEeCCCCC-eEEEEEEEEC
Confidence 9998 4554 4466777763
No 293
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.09 E-value=2.5e-05 Score=62.92 Aligned_cols=75 Identities=31% Similarity=0.575 Sum_probs=50.8
Q ss_pred CCcEEEEEEEeecC-------CCeeEEEECC-----Eec----CC----------CCCeEecc-----CCcEEEEccCCC
Q psy11701 48 NKKVELFCIFGGTP-------LPQTIWSKDG-----VPI----NP----------SDRISQGN-----YGKSLIIKHVEF 96 (745)
Q Consensus 48 G~~~~l~C~~~g~p-------~~~v~W~~~~-----~~i----~~----------~~~~~~~~-----~~~~L~i~~~~~ 96 (745)
|++|+|.|...-.| .+.|.|.|.. +.+ .. .+|+.+.. ...+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999975332 3589998741 111 00 13444422 345899999999
Q ss_pred CCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701 97 SDQGSYTCEVSNGVGEAKSYSIDLSVL 123 (745)
Q Consensus 97 ~d~G~Y~C~~~~~~g~~~~~~~~l~V~ 123 (745)
+|+|.|+|.+....... ...+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~-~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDE-QDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCccc-EEEEEEEEE
Confidence 99999999999854333 366777775
No 294
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.08 E-value=2.8e-05 Score=62.31 Aligned_cols=74 Identities=28% Similarity=0.390 Sum_probs=50.1
Q ss_pred CeEEEEEEEeecC---CCeEEEEeCCEe----c---c-------CCCCCCceee-----cCceEEEccCCCCCCEEEEEE
Q psy11701 141 ETVTFECKASGLP---EPEIHWVHNGKP----I---S-------QAPPNPRRKV-----GPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 141 ~~~~l~C~~~~~p---~~~v~W~~~g~~----~---~-------~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
++++|.|.....+ ...+.|+|.... + . ......+... .+..|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999987643 347999995421 0 0 0111112211 346899999999999999999
Q ss_pred EEe-CCceEEEEEEEEE
Q psy11701 199 ATN-SLGYVYKDVYVNV 214 (745)
Q Consensus 199 ~~~-~~g~~~~~~~l~v 214 (745)
+.. +.|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 974 6677777777766
No 295
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.08 E-value=2.7e-05 Score=64.05 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=49.3
Q ss_pred cCceeEeeCCCeEEEEEEEeecC----CCeEEEEeC----CEe--cc----------CCCCCCcee------ecCceEEE
Q psy11701 131 EPEFINAAEEETVTFECKASGLP----EPEIHWVHN----GKP--IS----------QAPPNPRRK------VGPNRITI 184 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~----g~~--~~----------~~~~~~~~~------~~~~~L~i 184 (745)
.|....+.+|++++|.|.....+ ...+.|++. +.. +- ......+.. ..+.+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 35667889999999999986432 236999851 111 10 001111221 12457999
Q ss_pred ccCCCCCCEEEEEEEEeCCc
Q psy11701 185 ENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 185 ~~v~~~d~G~Y~C~~~~~~g 204 (745)
.+++.+|+|.|.|.+.|..+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999998654
No 296
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.07 E-value=6.8e-05 Score=60.43 Aligned_cols=76 Identities=30% Similarity=0.475 Sum_probs=52.7
Q ss_pred CCeEEEEEEEeecC-----------CCeEEEEeC-----CEe-----c---------cCCCCCCceee-------cCceE
Q psy11701 140 EETVTFECKASGLP-----------EPEIHWVHN-----GKP-----I---------SQAPPNPRRKV-------GPNRI 182 (745)
Q Consensus 140 G~~~~l~C~~~~~p-----------~~~v~W~~~-----g~~-----~---------~~~~~~~~~~~-------~~~~L 182 (745)
|++++|.|...-.| ...|.|++- |+. + .......+... ++.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78899999986322 238999874 111 1 01122223332 35689
Q ss_pred EEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 183 ~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
.|.+++.+|+|.|.|.+.+........+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999887777777777775
No 297
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.06 E-value=3.4e-05 Score=62.19 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=51.7
Q ss_pred CCCeEEEEEEEeecC-------CCeEEEEeCC-----Eec-----------cCCCCCCceee-------cCceEEEccCC
Q psy11701 139 EEETVTFECKASGLP-------EPEIHWVHNG-----KPI-----------SQAPPNPRRKV-------GPNRITIENLR 188 (745)
Q Consensus 139 ~G~~~~l~C~~~~~p-------~~~v~W~~~g-----~~~-----------~~~~~~~~~~~-------~~~~L~i~~v~ 188 (745)
.|++++|+|...-.| .+.+.|.|.. +.+ .......+... ++.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378999999965322 3589999741 111 01112223332 24589999999
Q ss_pred CCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 189 KSDTGNYGCNATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 189 ~~d~G~Y~C~~~~~~g~~~~~~~l~v~ 215 (745)
.+|+|.|.|.+.......+..+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999866556666777665
No 298
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.05 E-value=2.9e-05 Score=62.92 Aligned_cols=80 Identities=18% Similarity=0.305 Sum_probs=54.9
Q ss_pred CCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC---eEeccC-C-----cEEEEccCCCCC-C
Q psy11701 32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR---ISQGNY-G-----KSLIIKHVEFSD-Q 99 (745)
Q Consensus 32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~---~~~~~~-~-----~~L~i~~~~~~d-~ 99 (745)
+|...+..|....+.+++.++|.|.+.|+ |.. +|.|+|||+.+..+.. ...... + +.|.|......+ .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 47777777777777788899999999887 543 8999999998875422 122222 2 246665444444 3
Q ss_pred EEEEEEEEeCCe
Q psy11701 100 GSYTCEVSNGVG 111 (745)
Q Consensus 100 G~Y~C~~~~~~g 111 (745)
-.|+|.+.....
T Consensus 82 ~~ytC~V~H~g~ 93 (115)
T cd05769 82 NTFTCIVQFYGG 93 (115)
T ss_pred CeEEEEEEEeCC
Confidence 489999987543
No 299
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.05 E-value=4.1e-05 Score=61.20 Aligned_cols=73 Identities=23% Similarity=0.449 Sum_probs=48.5
Q ss_pred CcEEEEEEEeecC---CCeeEEEEC--CE---ecC---C----------CCCeEecc----CCcEEEEccCCCCCCEEEE
Q psy11701 49 KKVELFCIFGGTP---LPQTIWSKD--GV---PIN---P----------SDRISQGN----YGKSLIIKHVEFSDQGSYT 103 (745)
Q Consensus 49 ~~~~l~C~~~g~p---~~~v~W~~~--~~---~i~---~----------~~~~~~~~----~~~~L~i~~~~~~d~G~Y~ 103 (745)
.+|+|.|.....+ ..+|.|+|. +. .+. . .+|..+.. .+.+|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999996443 338999983 21 110 0 13444432 2458999999999999999
Q ss_pred EEEEe-CCeeeEEEEEEEEE
Q psy11701 104 CEVSN-GVGEAKSYSIDLSV 122 (745)
Q Consensus 104 C~~~~-~~g~~~~~~~~l~V 122 (745)
|.+.+ ..|.. +..+.|.|
T Consensus 81 C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred EEEEeCCCCCe-eeEEEEEe
Confidence 99987 44543 46666766
No 300
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.05 E-value=3.7e-05 Score=60.03 Aligned_cols=75 Identities=25% Similarity=0.323 Sum_probs=51.4
Q ss_pred CeEEEEEEEeec-CCCeEEEEeCC----EeccC----------CCCCCceee-----cCceEEEccCCCCCCEEEEEEEE
Q psy11701 141 ETVTFECKASGL-PEPEIHWVHNG----KPISQ----------APPNPRRKV-----GPNRITIENLRKSDTGNYGCNAT 200 (745)
Q Consensus 141 ~~~~l~C~~~~~-p~~~v~W~~~g----~~~~~----------~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~ 200 (745)
++++|+|..... ...+++|.|.. ..+.. .....+... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999998642 33489998842 12210 111123222 35799999999999999999985
Q ss_pred -eCCceEEEEEEEEEe
Q psy11701 201 -NSLGYVYKDVYVNVL 215 (745)
Q Consensus 201 -~~~g~~~~~~~l~v~ 215 (745)
.+.|....+..|.|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 677888888887763
No 301
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.05 E-value=3.2e-05 Score=66.51 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=58.6
Q ss_pred eeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccC---------CCCCCceee-----cCceEEEccCCCCCCEEEEEE
Q psy11701 134 FINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQ---------APPNPRRKV-----GPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~---------~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
...+.+|++++|.|... +...+.++|+|..+.+.. .....+... ....|+|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45678999999999984 556679999996433210 111123332 457899999999999999999
Q ss_pred EE-eCCc-eEEEEEEEEEee
Q psy11701 199 AT-NSLG-YVYKDVYVNVLA 216 (745)
Q Consensus 199 ~~-~~~g-~~~~~~~l~v~~ 216 (745)
.. .+.| ..+...-|.|..
T Consensus 104 F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEecCCCCCceeEEEEEEEc
Confidence 86 4456 556666777764
No 302
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.04 E-value=2.1e-05 Score=61.89 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=50.5
Q ss_pred CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC-ceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP-RRKVGPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
|.+...| ...|.+|++|+|.|.... +...+.|+|+|.......... ........|.|.+++.+|+|.|.|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 4444444 345789999999998865 556899999887643211000 0111234789999999999999999763
No 303
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.04 E-value=2.1e-05 Score=65.28 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=51.9
Q ss_pred EeeccceeEecCCcEEEEEEEeec-CCCeeEEEEC--CEe---c---------CCCCCeEec----cCCcEEEEccCCCC
Q psy11701 37 YVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKD--GVP---I---------NPSDRISQG----NYGKSLIIKHVEFS 97 (745)
Q Consensus 37 ~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~--~~~---i---------~~~~~~~~~----~~~~~L~i~~~~~~ 97 (745)
...|..+.+.+|++|+|.|..... ....+.|+|. +.. | ...+|+.+. ....+|+|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 345677889999999999998653 4457999982 211 1 113455543 22347999999999
Q ss_pred CCEEEEEEEEe
Q psy11701 98 DQGSYTCEVSN 108 (745)
Q Consensus 98 d~G~Y~C~~~~ 108 (745)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999974
No 304
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.04 E-value=7.5e-05 Score=60.20 Aligned_cols=75 Identities=31% Similarity=0.499 Sum_probs=51.7
Q ss_pred CCcEEEEEEEeecC-----------CCeeEEEEC-----CE-----ec--C----------CCCCeEec-----cCCcEE
Q psy11701 48 NKKVELFCIFGGTP-----------LPQTIWSKD-----GV-----PI--N----------PSDRISQG-----NYGKSL 89 (745)
Q Consensus 48 G~~~~l~C~~~g~p-----------~~~v~W~~~-----~~-----~i--~----------~~~~~~~~-----~~~~~L 89 (745)
|.+++|.|...-.| ...|.|++- ++ .+ . -.+|..+. ..+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999997443 227999873 11 11 0 01344442 234689
Q ss_pred EEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701 90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123 (745)
Q Consensus 90 ~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~ 123 (745)
.|.+++.+|+|.|+|.+.+...... ..+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~-~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQ-DTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccE-EEEEEEEE
Confidence 9999999999999999998765554 66777775
No 305
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.03 E-value=0.0005 Score=67.63 Aligned_cols=193 Identities=20% Similarity=0.259 Sum_probs=111.2
Q ss_pred EEEEccCCCCCCEEEEEEEEeCC-e-eeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee-cCC--CeEEEEeC
Q psy11701 88 SLIIKHVEFSDQGSYTCEVSNGV-G-EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPE--PEIHWVHN 162 (745)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~-g-~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~--~~v~W~~~ 162 (745)
.|.|.+++..++|.|.=++.+.. + ....+.+.|.+..+|.+.+.+.. +.+|+...-.|.+.. +|. ..+.|+.|
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 59999999999999987765432 2 22346688888899987777664 789999999999977 444 38999999
Q ss_pred CEeccCCCCCCcee-ecCc------eEEEccCCCCC--CEEEEEEEEe-CCceEEEE----EEEEEeecCCeeeeCCCce
Q psy11701 163 GKPISQAPPNPRRK-VGPN------RITIENLRKSD--TGNYGCNATN-SLGYVYKD----VYVNVLAHAPEITEAPKDE 228 (745)
Q Consensus 163 g~~~~~~~~~~~~~-~~~~------~L~i~~v~~~d--~G~Y~C~~~~-~~g~~~~~----~~l~v~~~~p~~~~~~~~~ 228 (745)
|.++.......... ..++ +|.+......| -=..+|.+.- ..+..... +.-.|. .+|.+.+
T Consensus 368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY-~~PtISm----- 441 (566)
T PHA03269 368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVY-PFPNVSI----- 441 (566)
T ss_pred CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccc-cCCeEEE-----
Confidence 99887432222222 1222 33332221112 2246999873 33322222 122222 3444432
Q ss_pred EEecCceEEEEEEEeecCC--CeEEEeeCCEEccCceEEEe-----ecCcEEEccc---CCCC-CEEEEEEEEe
Q psy11701 229 YTVDGKTVVLTCRVFGAPK--PEVNWIHNQKELTGGRYTIL-----ETGDLKITDV---AFAD-SGEYTCFARN 291 (745)
Q Consensus 229 ~v~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~-----~~~~l~i~~~---~~~d-~G~Y~C~~~n 291 (745)
.+..|. ..|.+.-.|. ..+.|..++.........+. ..+-..+... ...| .-.|+|++..
T Consensus 442 ~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G 512 (566)
T PHA03269 442 EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG 512 (566)
T ss_pred EEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence 233343 2355444433 47999987765443332221 1223444442 2232 2489999863
No 306
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.01 E-value=8.3e-05 Score=58.73 Aligned_cols=73 Identities=21% Similarity=0.395 Sum_probs=48.9
Q ss_pred eEEEEEEEee-cCCC---eEEEEeCC--E--ecc----------CCCCCCceee-----cCceEEEccCCCCCCEEEEEE
Q psy11701 142 TVTFECKASG-LPEP---EIHWVHNG--K--PIS----------QAPPNPRRKV-----GPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 142 ~~~l~C~~~~-~p~~---~v~W~~~g--~--~~~----------~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
+++|.|.... .|.. +|+|.+.. . .+. ......+... .+.+|.|.+++.+|.|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 6899999864 2222 79998841 1 110 0011122221 347899999999999999999
Q ss_pred EEe-CCceEEEEEEEEE
Q psy11701 199 ATN-SLGYVYKDVYVNV 214 (745)
Q Consensus 199 ~~~-~~g~~~~~~~l~v 214 (745)
+.+ +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 6787777777776
No 307
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.00 E-value=1.3e-05 Score=65.22 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=51.2
Q ss_pred EEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEeCC--Ee---cc-C-----CCCCCceee----cCceEEEccCCCCC
Q psy11701 128 FTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNG--KP---IS-Q-----APPNPRRKV----GPNRITIENLRKSD 191 (745)
Q Consensus 128 ~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~g--~~---~~-~-----~~~~~~~~~----~~~~L~i~~v~~~d 191 (745)
+...|....+.+|++++|.|.+.+.. ...+.|||.. +. +. . .....++.. ....|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 34557778899999999999997654 5689999842 11 11 0 001122222 22469999999999
Q ss_pred CEEEEEEEEeC
Q psy11701 192 TGNYGCNATNS 202 (745)
Q Consensus 192 ~G~Y~C~~~~~ 202 (745)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998643
No 308
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.00 E-value=2.8e-05 Score=61.86 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=53.4
Q ss_pred CCCeeEeeccceeEecCCcEEEEEEEeec-C-CCeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEE
Q psy11701 32 APKQQYVTRKKEVALRNKKVELFCIFGGT-P-LPQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGS 101 (745)
Q Consensus 32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p-~~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~ 101 (745)
+|...+..|......+++.++|.|.+.|+ | ...|.|+|||+++..+.. .....++ +.|.+..-...+...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 36666777777777788999999999886 5 448999999999864311 1112122 245565444445669
Q ss_pred EEEEEEeC
Q psy11701 102 YTCEVSNG 109 (745)
Q Consensus 102 Y~C~~~~~ 109 (745)
|+|.|...
T Consensus 81 ~sC~V~H~ 88 (100)
T cd07699 81 YTCEVTHE 88 (100)
T ss_pred EEEEEEec
Confidence 99999875
No 309
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.00 E-value=0.00062 Score=66.15 Aligned_cols=192 Identities=16% Similarity=0.259 Sum_probs=109.4
Q ss_pred EEEEccCCCCCCEEEEEEEEeCCee-eEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee-cCC--CeEEEEeCC
Q psy11701 88 SLIIKHVEFSDQGSYTCEVSNGVGE-AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPE--PEIHWVHNG 163 (745)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~g~-~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~--~~v~W~~~g 163 (745)
.|.|..++.+.+|.|+=...+..+. ...+.+.|..+.+|.+.+.+.. +.+|+...-.|.+.. +|. ..+.|++||
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 4999999999999999998765443 3346677888889988777664 679999999999977 444 389999999
Q ss_pred EeccCCCCC-Cceee-cCceEEEccCCCCCCE------EEEEEEEe-CCceEEEE----EEEEEeecCCeeeeCCCceEE
Q psy11701 164 KPISQAPPN-PRRKV-GPNRITIENLRKSDTG------NYGCNATN-SLGYVYKD----VYVNVLAHAPEITEAPKDEYT 230 (745)
Q Consensus 164 ~~~~~~~~~-~~~~~-~~~~L~i~~v~~~d~G------~Y~C~~~~-~~g~~~~~----~~l~v~~~~p~~~~~~~~~~v 230 (745)
.++..-... ..... .++--.++-++..+.+ ..+|.+.- ......+. +.-.|+ .+|.+.+ .+
T Consensus 261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY-~~P~Isv-----~F 334 (466)
T PHA03270 261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVL-PRPTIEM-----EF 334 (466)
T ss_pred ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccc-cCCeEEE-----EE
Confidence 988632211 11111 1121122223333322 68999873 33322222 222222 3444432 23
Q ss_pred ecCceEEEEEEEeecC-CCeEEEeeCCEEccCceEEEe------ecCcEEEcccCC--CCCEEEEEEEE
Q psy11701 231 VDGKTVVLTCRVFGAP-KPEVNWIHNQKELTGGRYTIL------ETGDLKITDVAF--ADSGEYTCFAR 290 (745)
Q Consensus 231 ~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~--~d~G~Y~C~~~ 290 (745)
..|. ..|.+.-.| ...+.|..++.........+. ..+-..|..... ++...|+|++.
T Consensus 335 ~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd~~~eYTCrl~ 400 (466)
T PHA03270 335 GGDE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSREHSEYTCRLV 400 (466)
T ss_pred eCCE---EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccccCCceEEEEEe
Confidence 3333 234443333 358999987765543322221 112222222211 23469999986
No 310
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.99 E-value=7e-05 Score=61.97 Aligned_cols=74 Identities=23% Similarity=0.402 Sum_probs=49.1
Q ss_pred cCceeEeeCCCeEEEEEEEeecC----CCeEEEEeCCE------ecc-----------CCCCCCceee------cCceEE
Q psy11701 131 EPEFINAAEEETVTFECKASGLP----EPEIHWVHNGK------PIS-----------QAPPNPRRKV------GPNRIT 183 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~g~------~~~-----------~~~~~~~~~~------~~~~L~ 183 (745)
.|....+.+|++++|.|...... ...+.|++... .+- ......+... .+.+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 36677888999999999986422 24699986321 110 0001111111 235799
Q ss_pred EccCCCCCCEEEEEEEEeCCc
Q psy11701 184 IENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 184 i~~v~~~d~G~Y~C~~~~~~g 204 (745)
|.+++.+|+|.|.|.+.+...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999997654
No 311
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.99 E-value=4.8e-05 Score=60.57 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=49.5
Q ss_pred CCeEEEEEEEeecCC-CeEEEEeCCE----ecc------C----CCCCCceee-----cCceEEEccCCCCCCEEEEEEE
Q psy11701 140 EETVTFECKASGLPE-PEIHWVHNGK----PIS------Q----APPNPRRKV-----GPNRITIENLRKSDTGNYGCNA 199 (745)
Q Consensus 140 G~~~~l~C~~~~~p~-~~v~W~~~g~----~~~------~----~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~ 199 (745)
|++++|.|....... ..+.|+|... .+. . .....+... .+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998754332 3799998432 110 0 011111111 3468999999999999999998
Q ss_pred E-eCCceEEEEEEEEE
Q psy11701 200 T-NSLGYVYKDVYVNV 214 (745)
Q Consensus 200 ~-~~~g~~~~~~~l~v 214 (745)
. .+.|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 56676666666665
No 312
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.98 E-value=3.3e-05 Score=58.85 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=43.3
Q ss_pred EEEEEEEee-cCCCeEEEEeCCEeccCCCCCC------ceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNP------RRKVGPNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
++|.|.+.| +|.+.++|+|||+.+....... ......+.|.+..-..++...|+|+|.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999977 7778999999999986432111 1111224567766666777889999987653
No 313
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.97 E-value=0.00011 Score=59.47 Aligned_cols=79 Identities=22% Similarity=0.324 Sum_probs=52.7
Q ss_pred CCCCeeEeeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC-eEeccCC------cEEEEccCCCCCCE-
Q psy11701 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR-ISQGNYG------KSLIIKHVEFSDQG- 100 (745)
Q Consensus 31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~-~~~~~~~------~~L~i~~~~~~d~G- 100 (745)
.+|..-++.+....+..|+.++|.|.+.|+ |. .+++|+|||+.+..... .....++ +.|.+. ....|.|
T Consensus 4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~ 82 (111)
T cd05772 4 AKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHS 82 (111)
T ss_pred cCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccC
Confidence 455665666666667789999999999886 54 48999999999864322 2111222 235554 3455555
Q ss_pred EEEEEEEeCC
Q psy11701 101 SYTCEVSNGV 110 (745)
Q Consensus 101 ~Y~C~~~~~~ 110 (745)
.|+|.+.+..
T Consensus 83 ~ytC~V~H~~ 92 (111)
T cd05772 83 QVTCEVQHRT 92 (111)
T ss_pred ceEEEEEeCC
Confidence 5999998753
No 314
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.97 E-value=2.2e-05 Score=62.54 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=48.9
Q ss_pred eCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCC-CCceeecC------ceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 138 AEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPP-NPRRKVGP------NRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 138 ~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~-~~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
..|+.+.|.|.+.|. |. +.++|+++|..+..... .......+ +.|.|.....+|.|.|+|+|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468999999999996 64 68999999999875442 11111222 3466666666799999999998754
No 315
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.96 E-value=3.3e-05 Score=61.79 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=47.7
Q ss_pred eeEecCCcEEEEEEEee-cCCCeeEEEECCE-----ec--------CCCCCeEecc----CCcEEEEccCCCCCCEEEEE
Q psy11701 43 EVALRNKKVELFCIFGG-TPLPQTIWSKDGV-----PI--------NPSDRISQGN----YGKSLIIKHVEFSDQGSYTC 104 (745)
Q Consensus 43 ~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~-----~i--------~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C 104 (745)
+.+.+|++|+|.|.... .....+.|+|... .| ....|+.+.. ...+|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35889999999999864 3455789998431 11 0123444421 22479999999999999999
Q ss_pred EEEeCC
Q psy11701 105 EVSNGV 110 (745)
Q Consensus 105 ~~~~~~ 110 (745)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 997643
No 316
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.96 E-value=8.1e-05 Score=59.49 Aligned_cols=73 Identities=15% Similarity=0.367 Sum_probs=47.4
Q ss_pred eEEEEEEEeecC---CCeEEEEeCCE-----ecc------C----CCCCCceee------cCceEEEccCCCCCCEEEEE
Q psy11701 142 TVTFECKASGLP---EPEIHWVHNGK-----PIS------Q----APPNPRRKV------GPNRITIENLRKSDTGNYGC 197 (745)
Q Consensus 142 ~~~l~C~~~~~p---~~~v~W~~~g~-----~~~------~----~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C 197 (745)
+++|+|...... ...+.|+|... .+. . .....+... .+.+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986433 34899998321 111 0 001112111 24689999999999999999
Q ss_pred EEEe-CCceEEEEEEEEE
Q psy11701 198 NATN-SLGYVYKDVYVNV 214 (745)
Q Consensus 198 ~~~~-~~g~~~~~~~l~v 214 (745)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9996 6676655566655
No 317
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.95 E-value=2.9e-05 Score=63.09 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=44.5
Q ss_pred eEecCCcEEEEEEEeecC-CCeeEEEEC--C---Eec------CC-----------CCCeEe--ccC--CcEEEEccCCC
Q psy11701 44 VALRNKKVELFCIFGGTP-LPQTIWSKD--G---VPI------NP-----------SDRISQ--GNY--GKSLIIKHVEF 96 (745)
Q Consensus 44 ~v~~G~~~~l~C~~~g~p-~~~v~W~~~--~---~~i------~~-----------~~~~~~--~~~--~~~L~i~~~~~ 96 (745)
.+.+|++|+|.|...+.. ...+.|||. | ..+ .. ..++.. ... ...|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 578999999999986533 447999983 2 110 00 123432 111 23699999999
Q ss_pred CCCEEEEEEEEe
Q psy11701 97 SDQGSYTCEVSN 108 (745)
Q Consensus 97 ~d~G~Y~C~~~~ 108 (745)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 318
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.94 E-value=3.3e-05 Score=59.01 Aligned_cols=61 Identities=20% Similarity=0.443 Sum_probs=42.8
Q ss_pred EEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecC-------ceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGP-------NRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
+.|.|.+.| +|.+.|+|+++|+.+..... ......+ +.|.|.....++...|+|+|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 689999977 68899999999998875332 1111112 3455555556777899999998753
No 319
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.93 E-value=7.2e-05 Score=62.17 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=49.4
Q ss_pred eeccceeEecCCcEEEEEEEeecC------CCeeEEEECCE-----e-c---CC--------CCCeEe----ccCCcEEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTP------LPQTIWSKDGV-----P-I---NP--------SDRISQ----GNYGKSLI 90 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p------~~~v~W~~~~~-----~-i---~~--------~~~~~~----~~~~~~L~ 90 (745)
..|+.+.+.+|++|+|.|...... ...+.|+|... . + .. .+|+.+ .....+|+
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 346677899999999999875221 23689998421 1 1 00 134444 12234799
Q ss_pred EccCCCCCCEEEEEEEEeC
Q psy11701 91 IKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 91 i~~~~~~d~G~Y~C~~~~~ 109 (745)
|.+++.+|+|.|.|++...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999999764
No 320
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.90 E-value=7e-05 Score=57.28 Aligned_cols=61 Identities=18% Similarity=0.356 Sum_probs=42.0
Q ss_pred EEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeec------CceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVG------PNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
+.|.|.+.+ .|.+.++|+++|+.+.... ....... .+.|.+.....++.+.|+|+|.|...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 689999976 5888999999999886432 1111111 23455555556667799999998754
No 321
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.90 E-value=0.0001 Score=57.70 Aligned_cols=66 Identities=27% Similarity=0.386 Sum_probs=44.1
Q ss_pred CcEEEEEEEeec-CCCeeEEEECCE----ec-----------CC--CCCeEecc---CCcEEEEccCCCCCCEEEEEEEE
Q psy11701 49 KKVELFCIFGGT-PLPQTIWSKDGV----PI-----------NP--SDRISQGN---YGKSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 49 ~~~~l~C~~~g~-p~~~v~W~~~~~----~i-----------~~--~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
+.++|.|..... ...+|+|.|... .| .. .+|+.+.. .+.+|+|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468999998432 344889988321 11 11 13444432 34689999999999999999997
Q ss_pred eC-CeeeE
Q psy11701 108 NG-VGEAK 114 (745)
Q Consensus 108 ~~-~g~~~ 114 (745)
.- .|...
T Consensus 81 t~P~g~~~ 88 (96)
T cd05889 81 TYPQGSWE 88 (96)
T ss_pred eCCCCCeE
Confidence 54 55544
No 322
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.89 E-value=7.2e-05 Score=57.02 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=40.3
Q ss_pred EEEEEEEee-cCCCeeEEEECCEecCCCCCeEe-ccCC------cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701 51 VELFCIFGG-TPLPQTIWSKDGVPINPSDRISQ-GNYG------KSLIIKHVEFSDQGSYTCEVSNGV 110 (745)
Q Consensus 51 ~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~~-~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (745)
++|+|.+.| +|...|+|+|||+.+........ ...+ +.|.+.....+|...|+|+|.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999976 47789999999999875332211 1122 256665444455559999998753
No 323
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.86 E-value=7.3e-05 Score=62.03 Aligned_cols=73 Identities=27% Similarity=0.423 Sum_probs=50.7
Q ss_pred ecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCE-----ecc-----------CCCCCCcee--e----cCceEEEcc
Q psy11701 130 VEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGK-----PIS-----------QAPPNPRRK--V----GPNRITIEN 186 (745)
Q Consensus 130 ~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~-----~~~-----------~~~~~~~~~--~----~~~~L~i~~ 186 (745)
..|....+.+|+++.|.|... ......+.|++... .+. ......+.. . ...+|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 346777889999999999998 44556999998322 111 000111111 1 124799999
Q ss_pred CCCCCCEEEEEEEEeC
Q psy11701 187 LRKSDTGNYGCNATNS 202 (745)
Q Consensus 187 v~~~d~G~Y~C~~~~~ 202 (745)
++.+|+|.|.|.+...
T Consensus 86 l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESGGGEEEEEEEEEES
T ss_pred CCcCcCEEEEEEEEEC
Confidence 9999999999999876
No 324
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.84 E-value=5.7e-05 Score=62.72 Aligned_cols=72 Identities=29% Similarity=0.519 Sum_probs=50.6
Q ss_pred ecCceeEeeCCCeEEEEEEEee--cCCCeEEEEeC--CEec------cC--------CCCCCceee------cCceEEEc
Q psy11701 130 VEPEFINAAEEETVTFECKASG--LPEPEIHWVHN--GKPI------SQ--------APPNPRRKV------GPNRITIE 185 (745)
Q Consensus 130 ~~~~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~--g~~~------~~--------~~~~~~~~~------~~~~L~i~ 185 (745)
..|....+.+|++++|.|.+.+ .+...+.|+|. |... .. .....++.. ....|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3466778889999999999977 56779999994 2211 00 001123321 23579999
Q ss_pred cCCCCCCEEEEEEEEe
Q psy11701 186 NLRKSDTGNYGCNATN 201 (745)
Q Consensus 186 ~v~~~d~G~Y~C~~~~ 201 (745)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 325
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.84 E-value=9.9e-05 Score=60.93 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=48.9
Q ss_pred eeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CE-e--c---C-----------CCCCeEec--cCC--cEEEEc
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GV-P--I---N-----------PSDRISQG--NYG--KSLIIK 92 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~-~--i---~-----------~~~~~~~~--~~~--~~L~i~ 92 (745)
.+|....+.+|++|+|.|...+.. ...+.|||- |+ + | . -.+|+... ... ..|+|.
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 356677899999999999885432 346999982 22 1 1 0 01344432 212 269999
Q ss_pred cCCCCCCEEEEEEEEe
Q psy11701 93 HVEFSDQGSYTCEVSN 108 (745)
Q Consensus 93 ~~~~~d~G~Y~C~~~~ 108 (745)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999999864
No 326
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.79 E-value=7.4e-05 Score=59.55 Aligned_cols=77 Identities=18% Similarity=0.337 Sum_probs=48.7
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC----eEecc--CC-----cEEEEccCCCCCC
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR----ISQGN--YG-----KSLIIKHVEFSDQ 99 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~----~~~~~--~~-----~~L~i~~~~~~d~ 99 (745)
|...+..|....+..|..++|.|.+.|+ |.. .+.|+|||+++..... ...+. ++ +.|.|..-...+.
T Consensus 1 P~v~l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~ 80 (102)
T cd05768 1 PSVYVLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAG 80 (102)
T ss_pred CeEEEeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCC
Confidence 3445566666666678999999999997 433 7899999998864321 11111 12 2355533333345
Q ss_pred EEEEEEEEeC
Q psy11701 100 GSYTCEVSNG 109 (745)
Q Consensus 100 G~Y~C~~~~~ 109 (745)
..|+|.|...
T Consensus 81 ~~ytC~V~H~ 90 (102)
T cd05768 81 DVFTCVVGHE 90 (102)
T ss_pred CcEEEEeEeC
Confidence 5899999865
No 327
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.76 E-value=0.0003 Score=55.36 Aligned_cols=74 Identities=20% Similarity=0.372 Sum_probs=44.2
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCC---CeEeccCCc--EEEEccCCCCCCEEEEEE
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSD---RISQGNYGK--SLIIKHVEFSDQGSYTCE 105 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~---~~~~~~~~~--~L~i~~~~~~d~G~Y~C~ 105 (745)
|...+..+... |+.++|.|.+.|+ |.. .++|+|+|+.+..+. ......++. ....-.+...+.+.|+|+
T Consensus 3 P~v~v~~~~~~----~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 3 PEVRVTRKRAP----DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CEEEEEecCCC----CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 44444444332 7889999999997 544 899999997443221 222222221 111223344577899999
Q ss_pred EEeCC
Q psy11701 106 VSNGV 110 (745)
Q Consensus 106 ~~~~~ 110 (745)
+.+..
T Consensus 79 V~H~~ 83 (93)
T cd07698 79 VEHSG 83 (93)
T ss_pred EEeCC
Confidence 98753
No 328
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.76 E-value=9.5e-05 Score=60.19 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=48.1
Q ss_pred EEecCceEEEEEEEeec-CCCeEEEeeCCEE-----c-------------cCceEEEee-----cCcEEEcccCCCCCEE
Q psy11701 229 YTVDGKTVVLTCRVFGA-PKPEVNWIHNQKE-----L-------------TGGRYTILE-----TGDLKITDVAFADSGE 284 (745)
Q Consensus 229 ~v~~g~~~~l~C~~~~~-p~~~i~W~~~~~~-----~-------------~~~~~~~~~-----~~~l~i~~~~~~d~G~ 284 (745)
.+.+|++++|.|.+... +...+.|++.... + ...++.... ..+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999876 5568999984321 1 122333322 2269999999999999
Q ss_pred EEEEEEeCCc
Q psy11701 285 YTCFARNKLG 294 (745)
Q Consensus 285 Y~C~~~n~~g 294 (745)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 329
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.75 E-value=0.00019 Score=56.08 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=47.0
Q ss_pred CCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCCe--EeccCC-----cEEEEccCCCCCCE-EE
Q psy11701 33 PKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDRI--SQGNYG-----KSLIIKHVEFSDQG-SY 102 (745)
Q Consensus 33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~~--~~~~~~-----~~L~i~~~~~~d~G-~Y 102 (745)
|...+..|+...+.-+..++|.|.+.|+ |.. +++|.|||+.+..+... ...+.+ +.|.|. .++.| .|
T Consensus 1 p~~~v~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~y 77 (96)
T cd07697 1 PKPTIFSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKF 77 (96)
T ss_pred CCCeEECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeE
Confidence 4455566676667677889999999987 433 78999999987643211 111222 134443 33234 69
Q ss_pred EEEEEeC
Q psy11701 103 TCEVSNG 109 (745)
Q Consensus 103 ~C~~~~~ 109 (745)
+|.+...
T Consensus 78 sC~V~H~ 84 (96)
T cd07697 78 RCIYKHE 84 (96)
T ss_pred EEEEEEC
Confidence 9999874
No 330
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.75 E-value=0.00024 Score=55.21 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=43.5
Q ss_pred eCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeecCceEEE---ccCCCCCCEEEEEEEEeCC
Q psy11701 138 AEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVGPNRITI---ENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 138 ~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i---~~v~~~d~G~Y~C~~~~~~ 203 (745)
..|+..+|.|.+.| +|. ..++|+|||+.+............++++.+ ..+...+...|+|++.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 35777899999999 454 489999999998722222222233444332 2345667778999998754
No 331
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.72 E-value=0.00025 Score=55.46 Aligned_cols=69 Identities=19% Similarity=0.376 Sum_probs=44.7
Q ss_pred eeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCC-CCCceeec------CceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701 137 AAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAP-PNPRRKVG------PNRITIENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 137 v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~-~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
...++.++|.|.+.| .|. ..++|++||+.+.... ........ .+.|.+......+...|+|+|.+....
T Consensus 11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred cCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 335677999999999 555 5999999999874321 11111112 234555544445667899999987644
No 332
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.71 E-value=0.0065 Score=59.35 Aligned_cols=160 Identities=18% Similarity=0.271 Sum_probs=95.0
Q ss_pred ceEEEccCCCCCCEEEEEEEEeCCceEEE--EEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEee
Q psy11701 180 NRITIENLRKSDTGNYGCNATNSLGYVYK--DVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWIH 254 (745)
Q Consensus 180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~--~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~~ 254 (745)
..|.|..++....|.|+=..-+..+.... .+.|... .+|.+.+.+ ..+..|+...-.|.+..+.++ .+.|++
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF-RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe-cCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 47999999999999999998766554333 3444444 366665543 446789999999998776433 699999
Q ss_pred CCEEccCceE-----EEeecCcEEEcccCCCCC------EEEEEEEEeCCceE-----EEEEEEEEeecceeecCCCcEE
Q psy11701 255 NQKELTGGRY-----TILETGDLKITDVAFADS------GEYTCFARNKLGTA-----QGSGSLTVKEHTHITDQPEDYE 318 (745)
Q Consensus 255 ~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~------G~Y~C~~~n~~g~~-----~~~~~l~v~~~p~~~~~p~~~~ 318 (745)
|+..+...++ ....++-..+.-++..+. =..+|.+.-..... ++...-.|..+|.+ .+.
T Consensus 259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~I-----sv~ 333 (466)
T PHA03270 259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTI-----EME 333 (466)
T ss_pred CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeE-----EEE
Confidence 9988753221 111222122222222222 27789886332221 12222233333322 133
Q ss_pred EecCCeEEEEEEEEecCCCCcEEEEeeCCeecc
Q psy11701 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351 (745)
Q Consensus 319 ~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~ 351 (745)
+..|. ..|.+...|. .+.+.|..++....
T Consensus 334 F~dG~---AVCtA~CVPe-gV~l~W~V~D~~~p 362 (466)
T PHA03270 334 FGGDE---AVCTAACVPE-GVTLAWLLGADPAP 362 (466)
T ss_pred EeCCE---EEEeccccCC-CCEEEEEecCCCCC
Confidence 34443 3488887775 68999998775553
No 333
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.71 E-value=0.00026 Score=55.32 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=46.0
Q ss_pred eeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
.+|.......++.++|.|.+.|+ |. .+|+|+|||+.+..+.. .....++ +.|.|..-...+...|+|.|.
T Consensus 4 ~~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~ 83 (94)
T cd05847 4 LHSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVT 83 (94)
T ss_pred ECcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEE
Confidence 34444444456779999999886 54 48899999998743211 1122222 245555444445669999998
Q ss_pred eCC
Q psy11701 108 NGV 110 (745)
Q Consensus 108 ~~~ 110 (745)
+..
T Consensus 84 H~~ 86 (94)
T cd05847 84 HQG 86 (94)
T ss_pred ECC
Confidence 754
No 334
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.69 E-value=0.00032 Score=56.75 Aligned_cols=69 Identities=22% Similarity=0.452 Sum_probs=44.1
Q ss_pred eeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeec------CceEEEccCCCCCCE-EEEEEEEeCC
Q psy11701 134 FINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVG------PNRITIENLRKSDTG-NYGCNATNSL 203 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~------~~~L~i~~v~~~d~G-~Y~C~~~~~~ 203 (745)
...+..|+.++|.|.+.| +|. ..++|+|||+.+............ .+.|.+.. ...|.| .|+|.+.+..
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 334567889999999988 564 599999999998643211111111 22344543 344444 5999999865
No 335
>KOG1480|consensus
Probab=97.68 E-value=1.1e-05 Score=83.30 Aligned_cols=170 Identities=22% Similarity=0.330 Sum_probs=106.3
Q ss_pred CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe---ccCC------cEEEEccCCCCCCE---E
Q psy11701 34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYG------KSLIIKHVEFSDQG---S 101 (745)
Q Consensus 34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~---~~~~------~~L~i~~~~~~d~G---~ 101 (745)
+.++..|++..+..|.++.|.|.+...+ ++...-+.+-|........ +... -++.|.--+.++.| -
T Consensus 25 ~~~~~~p~~~yii~~~p~~l~c~a~~a~--~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d 102 (909)
T KOG1480|consen 25 PHFTTEPKSAYIIKNKPLRLQCKANPAT--QIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED 102 (909)
T ss_pred ceeeecCCccceecCCCccceecCCccc--ccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence 4478999999999999999999986433 3332222222222111110 1111 12334433444443 4
Q ss_pred EEEE--EEeCCeeeEEEEEEEEEEe-cCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceee
Q psy11701 102 YTCE--VSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKV 177 (745)
Q Consensus 102 Y~C~--~~~~~g~~~~~~~~l~V~~-~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~ 177 (745)
|.|+ +....|...+....+.+.. .-.|...|.-..|..+....+.|+. .+.|...++|+|++..+.. .......
T Consensus 103 ~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~ 180 (909)
T KOG1480|consen 103 YWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRA 180 (909)
T ss_pred eeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhh
Confidence 6555 4445553332222222211 2234556777788889999999987 6788899999999988875 2222334
Q ss_pred cCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701 178 GPNRITIENLRKSDTGNYGCNATNSLGYVY 207 (745)
Q Consensus 178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~ 207 (745)
..+.|++..+...|.|+|+|+|.|..+...
T Consensus 181 ~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 181 SDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred hcCCccccchhhhhcccceeeeehhhcccc
Confidence 567899999999999999999998776543
No 336
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.68 E-value=0.00012 Score=59.01 Aligned_cols=65 Identities=26% Similarity=0.339 Sum_probs=44.4
Q ss_pred eEecCCcEEEEEEEeecCCCeeEEEEC--C--Eec------CC------------CCCeEe--ccCCcEEEEccCCCCCC
Q psy11701 44 VALRNKKVELFCIFGGTPLPQTIWSKD--G--VPI------NP------------SDRISQ--GNYGKSLIIKHVEFSDQ 99 (745)
Q Consensus 44 ~v~~G~~~~l~C~~~g~p~~~v~W~~~--~--~~i------~~------------~~~~~~--~~~~~~L~i~~~~~~d~ 99 (745)
.+.+|++|+|.|.........+.|+|. | ..+ .. ..++.. ......|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 478999999999986544457999983 2 111 00 112322 12233799999999999
Q ss_pred EEEEEEEEe
Q psy11701 100 GSYTCEVSN 108 (745)
Q Consensus 100 G~Y~C~~~~ 108 (745)
|.|.|.+..
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999853
No 337
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.68 E-value=0.0044 Score=61.17 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=94.3
Q ss_pred ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe-ecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEeeC
Q psy11701 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL-AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWIHN 255 (745)
Q Consensus 180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~-~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~~~ 255 (745)
..|.|..++..+.|.|+=.+.+..+.......+.|. ..+|.+.+.+ ..+.+|+...-.|.+..+.++ .+.|++|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 359999999999999986665655554444455552 2366655443 456789999999998776333 6999999
Q ss_pred CEEccCceE-----EEeecC------cEEEcccCC-CCCEEEEEEEEeCCceE-E----EEEEEEEeecceeecCCCcEE
Q psy11701 256 QKELTGGRY-----TILETG------DLKITDVAF-ADSGEYTCFARNKLGTA-Q----GSGSLTVKEHTHITDQPEDYE 318 (745)
Q Consensus 256 ~~~~~~~~~-----~~~~~~------~l~i~~~~~-~d~G~Y~C~~~n~~g~~-~----~~~~l~v~~~p~~~~~p~~~~ 318 (745)
+.++...++ ....++ +|++..... +..=..+|.+.-..+.. . +...-.|..+|.+ .+.
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~I-----s~~ 350 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTV-----SVT 350 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeE-----EEE
Confidence 998862222 111122 344444322 23347899886332221 1 1222233333322 233
Q ss_pred EecCCeEEEEEEEEecCCCCcEEEEeeCC
Q psy11701 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGS 347 (745)
Q Consensus 319 ~~~g~~~~l~C~~~~~~~~~~~i~W~~~~ 347 (745)
+..|+. .|.+...|...+.+.|..++
T Consensus 351 F~~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 351 VEDGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EeCCEE---EEecccccCCCeeEEEEccC
Confidence 344433 48887776545899998776
No 338
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.67 E-value=0.011 Score=57.42 Aligned_cols=163 Identities=17% Similarity=0.300 Sum_probs=96.3
Q ss_pred ceEEEccCCCCCCEEEEEEEEeCCce--EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEee
Q psy11701 180 NRITIENLRKSDTGNYGCNATNSLGY--VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWIH 254 (745)
Q Consensus 180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~--~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~~ 254 (745)
-.|.|.++...++|.|+....+.... ..+...+.+...||.+...+. .+..|+...-.|.+..+.++ .+.|++
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 36899999999999886666654433 234466666667777766543 45689999999998876433 699999
Q ss_pred CCEEccCceE---EE---------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCC-cEEEec
Q psy11701 255 NQKELTGGRY---TI---------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE-DYEVEA 321 (745)
Q Consensus 255 ~~~~~~~~~~---~~---------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~-~~~~~~ 321 (745)
||..+..... .. ..-++|.+.+...+..=..+|.+.-..+...... .-...|.+...|. .+.+..
T Consensus 285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~ISv~Fed 362 (490)
T PHA03271 285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAIPTVYHHPRISLAFKD 362 (490)
T ss_pred CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccCCccccCCeEEEEEeC
Confidence 9887643211 10 0111344433322333478999864333221111 2222222222332 233444
Q ss_pred CCeEEEEEEEEecCCCCcEEEEeeCCeec
Q psy11701 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPI 350 (745)
Q Consensus 322 g~~~~l~C~~~~~~~~~~~i~W~~~~~~~ 350 (745)
|+. .|.+...|. ...+.|.-++...
T Consensus 363 G~A---VCtA~CVP~-gV~lrWlVgD~p~ 387 (490)
T PHA03271 363 GYA---ICTIECVPS-GITVRWLVHDEPQ 387 (490)
T ss_pred CEE---EEeccccCC-CcEEEEEecCCCC
Confidence 443 488877775 6899999877553
No 339
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.67 E-value=0.00016 Score=57.55 Aligned_cols=68 Identities=15% Similarity=0.311 Sum_probs=45.6
Q ss_pred EeeCCCeEEEEEEEee-cC-CCeEEEEeCCEeccCCCCCCc-eeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 136 NAAEEETVTFECKASG-LP-EPEIHWVHNGKPISQAPPNPR-RKVGP------NRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 136 ~v~~G~~~~l~C~~~~-~p-~~~v~W~~~g~~~~~~~~~~~-~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
....++.++|.|.+.| +| ...++|++||+.+........ ....+ +.|.+.....++...|+|.+.+..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 4456788999999998 55 459999999999853322111 11222 345555555556778999998764
No 340
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.66 E-value=0.00051 Score=51.42 Aligned_cols=60 Identities=22% Similarity=0.501 Sum_probs=40.0
Q ss_pred cEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeC
Q psy11701 50 KVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 50 ~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
.++|.|.+.|+ |. ..++|+|||+++..+.. .....++ +.|.|.....++...|+|.|.+.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 37899999887 54 48999999997553311 1122222 24666555666667999999764
No 341
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.64 E-value=8.8e-05 Score=59.27 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=44.9
Q ss_pred EeeCCCeEEEEEEEeec--CCCeEEEEeCCE--ecc---------CCCCCCceee----cCceEEEccCCCCCCEEEEEE
Q psy11701 136 NAAEEETVTFECKASGL--PEPEIHWVHNGK--PIS---------QAPPNPRRKV----GPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 136 ~v~~G~~~~l~C~~~~~--p~~~v~W~~~g~--~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
.+.+|++++|.|...+. ....+.||+... ... ......++.. ....|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998764 455799998321 110 0011122222 234699999999999999999
Q ss_pred EEe
Q psy11701 199 ATN 201 (745)
Q Consensus 199 ~~~ 201 (745)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 342
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.64 E-value=0.00036 Score=52.23 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=41.1
Q ss_pred eEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCc-eeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 142 TVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPR-RKVGP------NRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 142 ~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~-~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
.++|.|.+.| +|. ..++|+|||+.+........ ....+ +.|.|.....++...|+|+|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 3689999998 455 59999999997543221111 11122 356666666677789999998754
No 343
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.64 E-value=0.00044 Score=54.21 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=43.4
Q ss_pred eCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCC-CCceeecCceEEE---ccCCCCCCEEEEEEEEeCCc
Q psy11701 138 AEEETVTFECKASG-LPEP-EIHWVHNGKPISQAPP-NPRRKVGPNRITI---ENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 138 ~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~-~~~~~~~~~~L~i---~~v~~~d~G~Y~C~~~~~~g 204 (745)
..|+.++|.|.+.| +|.. .++|++||+.+..... ......+++++.+ ..+..++...|+|++.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 46899999999999 5554 8999999998775311 1112222222221 13344566689999998653
No 344
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.63 E-value=0.00047 Score=54.23 Aligned_cols=64 Identities=20% Similarity=0.462 Sum_probs=41.0
Q ss_pred CCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCC-CceeecCceEE---EccCCCCCCEEEEEEEEeCC
Q psy11701 140 EETVTFECKASG-LPEP-EIHWVHNGKPISQAPPN-PRRKVGPNRIT---IENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 140 G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~-~~~~~~~~~L~---i~~v~~~d~G~Y~C~~~~~~ 203 (745)
|+.++|.|.+.| .|.. .++|+++|+.+...... ......++++. ...+...+.+.|+|++.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 788999999999 4554 99999999644322221 11222233222 23344458889999998764
No 345
>KOG4258|consensus
Probab=97.63 E-value=9e-05 Score=77.86 Aligned_cols=132 Identities=17% Similarity=0.315 Sum_probs=88.5
Q ss_pred eeEEEecccccCcceeEEEEEecCCCC----CCCCcceEEeCC-----CCCCCCCCceeEEEcCCceEEEEeeCCCCCCC
Q psy11701 462 STTTEVDKFVPASKNFARVLAFNGAYN----GPPSEIISFVTP-----EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG 532 (745)
Q Consensus 462 ~~~~~i~~L~~~~~Y~~~V~a~n~~G~----g~~S~~~~~~t~-----~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g 532 (745)
..++.|.+|...+.|.+.+.|.|..+. |..+. +..+|. ++.|+ |. ........+++.|.|.+|.+++|
T Consensus 781 ~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~-v~~RT~~~~~aD~i~g-~v-~we~~~~~~~v~l~w~EP~~pNG 857 (1025)
T KOG4258|consen 781 KESYVISGLRHFTLYRIDLQACNHATPKCGCSHAAF-VFARTMPTMGADDIPG-PV-TWECHIEMNSVILRWLEPKEPNG 857 (1025)
T ss_pred chhhhhhccccchhhhhhHhhhcccccccccchhhh-hhhccccccccccCCC-ce-eEecccCcceEEEecCCCCCCCc
Confidence 346778899999999999999998776 33322 222221 22333 11 11222378899999999999999
Q ss_pred ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701 533 VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV 600 (745)
Q Consensus 533 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~ 600 (745)
-|.+|.|.|+.......-..+.... ........+.+|.| ..|.++|+|.+-+|.|++.+.+.+.
T Consensus 858 li~~Y~Vk~r~~~~et~v~cvsR~~---~~k~~gv~l~~l~~-G~y~~~vratSlaGng~~t~~~~~~ 921 (1025)
T KOG4258|consen 858 LILNYEVKYRRNGDETHVECVSRMD---YAKAGGVYLKRLNP-GNYSVRVRATSLAGNGSWTESVIFY 921 (1025)
T ss_pred cEEEEEEEEeeccCcchhhhhhhhh---hhhcCceEEEecCC-CcEEEEEEEEeeccCCCCcCCcceE
Confidence 9999999999765443222111100 12334566777776 4799999999999999997665433
No 346
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.61 E-value=0.00074 Score=52.93 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=41.2
Q ss_pred ecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701 46 LRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNGV 110 (745)
Q Consensus 46 ~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (745)
.+|+.++|.|.+.|+ |.. .++|+|||+++..... .....++ +.|.+ ...+...|+|++....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence 468999999999886 544 8899999999875311 1112222 13433 3345568999998753
No 347
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.61 E-value=0.0071 Score=59.87 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=93.2
Q ss_pred ceEEEccCCCCCCEEEEEEEEeC-Cce--EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEe
Q psy11701 180 NRITIENLRKSDTGNYGCNATNS-LGY--VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWI 253 (745)
Q Consensus 180 ~~L~i~~v~~~d~G~Y~C~~~~~-~g~--~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~ 253 (745)
-.|.|.++...+.|.|+=++.+. .+. ....+.|.+.. +|.+.+. ..-+.+|+...-.|.+..+.++ .+.|+
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr-~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf 365 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYK-RPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWT 365 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEec-CCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEE
Confidence 46999999999999998665432 222 23445555553 5655444 3456789999999998776433 69999
Q ss_pred eCCEEccC----ceEEEeecC------cEEEcccCCCC--CEEEEEEEEeCCceE-----EEEEEEEEeecceeecCCCc
Q psy11701 254 HNQKELTG----GRYTILETG------DLKITDVAFAD--SGEYTCFARNKLGTA-----QGSGSLTVKEHTHITDQPED 316 (745)
Q Consensus 254 ~~~~~~~~----~~~~~~~~~------~l~i~~~~~~d--~G~Y~C~~~n~~g~~-----~~~~~l~v~~~p~~~~~p~~ 316 (745)
+|+..+.. ..+....+| +|++......| .=..+|.+.-..+.. ++...-.|..+|.+ .
T Consensus 366 ~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtI-----S 440 (566)
T PHA03269 366 SNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNV-----S 440 (566)
T ss_pred eCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeE-----E
Confidence 99888763 122222333 24332211111 235699886332221 12222233333322 2
Q ss_pred EEEecCCeEEEEEEEEecCCCCcEEEEeeCCeec
Q psy11701 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI 350 (745)
Q Consensus 317 ~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~ 350 (745)
+.+..|.. .|.+...|.-...+.|..++...
T Consensus 441 m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~ 471 (566)
T PHA03269 441 IEIIDGHI---VCLAKCVPRGVVHFNWWINDIPI 471 (566)
T ss_pred EEEeCCEE---EEecccccCCCceEEEEecCCCC
Confidence 33444433 48887776644689999877653
No 348
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.60 E-value=0.00022 Score=59.08 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=50.4
Q ss_pred EecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeC--CEe---cc------CCCCCCceee------cCceEEEccCCCC
Q psy11701 129 TVEPEFINAAEEETVTFECKASGL-PEPEIHWVHN--GKP---IS------QAPPNPRRKV------GPNRITIENLRKS 190 (745)
Q Consensus 129 ~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~--g~~---~~------~~~~~~~~~~------~~~~L~i~~v~~~ 190 (745)
...|....+.+|++++|.|..... ....+.|+|. +.. +. ......++.. ....|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 345667788999999999998753 4568999983 211 10 0111233322 2347999999999
Q ss_pred CCEEEEEEEEe
Q psy11701 191 DTGNYGCNATN 201 (745)
Q Consensus 191 d~G~Y~C~~~~ 201 (745)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999984
No 349
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.58 E-value=0.00036 Score=51.75 Aligned_cols=61 Identities=41% Similarity=0.761 Sum_probs=46.4
Q ss_pred EEEEEEEeecCCCeEEEEeCCEeccCCCC-----CCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 143 VTFECKASGLPEPEIHWVHNGKPISQAPP-----NPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
+.|.|.+.+.+...+.|++++........ ..........|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899998877779999998877654321 11223345689999999999999999998765
No 350
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.57 E-value=0.00056 Score=53.51 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=45.9
Q ss_pred CeEEEEEEEee-cCCCeEEEEeCCE----ecc----------CCCCCCceee-----cCceEEEccCCCCCCEEEEEEEE
Q psy11701 141 ETVTFECKASG-LPEPEIHWVHNGK----PIS----------QAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNAT 200 (745)
Q Consensus 141 ~~~~l~C~~~~-~p~~~v~W~~~g~----~~~----------~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~ 200 (745)
+.++|.|.... ....+++|.|... .+. ......+... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46899999853 2345889998422 111 0111122221 34789999999999999999997
Q ss_pred -eCCceEEEEEE
Q psy11701 201 -NSLGYVYKDVY 211 (745)
Q Consensus 201 -~~~g~~~~~~~ 211 (745)
.+.|.....+.
T Consensus 81 t~P~g~~~~~i~ 92 (96)
T cd05889 81 TYPQGSWEKVIE 92 (96)
T ss_pred eCCCCCeEEEEE
Confidence 45666655544
No 351
>KOG0613|consensus
Probab=97.56 E-value=0.00049 Score=76.52 Aligned_cols=443 Identities=14% Similarity=0.034 Sum_probs=234.1
Q ss_pred cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~ 210 (745)
.+.......++...|.|...+...+.+.|+.+....... ..+.....|.+-...+.+.|+|...+..+.....+
T Consensus 235 ~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v 308 (1205)
T KOG0613|consen 235 APSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKV 308 (1205)
T ss_pred ccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc------cCCCccccccccCCccccceeeecccCCcccceee
Confidence 345555667788888888888777777887765433321 22334566777777778888888877665544332
Q ss_pred EEEEee---------------cCCee---eeCCCceEEecCceEEEEEEEeecCCCe-EEEeeCCEEccCce---EE---
Q psy11701 211 YVNVLA---------------HAPEI---TEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGR---YT--- 265 (745)
Q Consensus 211 ~l~v~~---------------~~p~~---~~~~~~~~v~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~---~~--- 265 (745)
...+.. .++.. ...........+..+++.|...+...+. +.|+++......+. ..
T Consensus 309 ~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1205)
T KOG0613|consen 309 TEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVG 388 (1205)
T ss_pred eEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccc
Confidence 222211 11111 1111223344577789999988877664 89998765432211 00
Q ss_pred EeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecC-----CCcEEE--ecCCeEEEEEEEEecCCCC
Q psy11701 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ-----PEDYEV--EAGQSATFRCNAVSDPSLK 338 (745)
Q Consensus 266 ~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~-----p~~~~~--~~g~~~~l~C~~~~~~~~~ 338 (745)
......+.+..+...+.+.|.|.|.|..|.........+......... ...... ..-+.+.+.|...+.+.+-
T Consensus 389 ~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~ 468 (1205)
T KOG0613|consen 389 TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPM 468 (1205)
T ss_pred cccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccc
Confidence 011235788888889999999999999887644433444332211111 111111 2337788888888777543
Q ss_pred cEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe-ccCCCCCCceeEEeecCc
Q psy11701 339 LSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPSNFTLIQVIDAK 417 (745)
Q Consensus 339 ~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~-~pp~~P~~~~~~~~~~~~ 417 (745)
..++|.+.+.+... ...........+|.+.-....+.+.|........+........... .-+.+|..+.-.. .-.+
T Consensus 469 ~~~tt~~~~~~~s~-~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~~~~~~~~-~~~g 546 (1205)
T KOG0613|consen 469 TTVTTIKDGLPLSD-RSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAPKPIHTQE-NQPG 546 (1205)
T ss_pred eeEeeccCCccccc-ccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCcccccccc-cCCC
Confidence 45666666544321 1112222222355566666677777755444333332222111110 1111221111111 2334
Q ss_pred eeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEE
Q psy11701 418 KAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF 497 (745)
Q Consensus 418 ~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~ 497 (745)
...+.|.+-+...... -.+|-+... ....+..... ..+ ...++.++.++..|.+.+.+.+..|.+.++..-..
T Consensus 547 ~p~l~~~~~~~E~~~v-s~~~~~a~~----qlg~~~~~~~-r~g-tt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~~~~t 619 (1205)
T KOG0613|consen 547 TPTLEWEPKPAEASKV-SLHYASATR----QLGVWRVPES-RPG-TTETIGSILPGHEYHVTIKAKNELGESRPSSKSTT 619 (1205)
T ss_pred CcccccCCCccccccc-chhhhhhhh----hccCCccccc-CCC-cccccccccccccceeehhhhhcccccCCCCCCcc
Confidence 4556665532221110 111221111 1111111111 223 77888899999999999999999999988841111
Q ss_pred eCCCCC---CCCCCceeEEEcCCceEEEEeeCCCCC-CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC
Q psy11701 498 VTPEGV---PGTVQSLEAIPLGSSAFYLKWVKPEQP-NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE 573 (745)
Q Consensus 498 ~t~~~~---P~~p~~~~~~~~~~~~i~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 573 (745)
.-..++ +..|..-........+..++|..+... -.++..|...........-..... ........++...-
T Consensus 620 ~k~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~~l~k~~~~a~~~~~~~~~vd~~~K~kv~~-----~~~e~d~~i~~~~~ 694 (1205)
T KOG0613|consen 620 LKWQDPSQLKRRPVSEPSYKSPDSSQKPSKLVGLSKMDLPANLESQVKPTVVSSPKKKVKK-----KKQEKDLEILAKKG 694 (1205)
T ss_pred ccccccccccccccCCccccccccccchhcccchhhccccccceeeeeccccCCccccccc-----cccccchhhhccCC
Confidence 111111 111222222333456677889887532 234555666555444332111111 02233456777888
Q ss_pred CCccEEEEEEEEecCCCCCC
Q psy11701 574 PSTKYRIHLAGYTKAGDGAE 593 (745)
Q Consensus 574 p~t~Y~~~V~a~n~~G~g~~ 593 (745)
+.+.|.+.+.+.+..+....
T Consensus 695 t~si~~p~k~~e~~~~~~~~ 714 (1205)
T KOG0613|consen 695 TTSIVEPEKPPESEAATPAE 714 (1205)
T ss_pred CCcccccccCCccccCCccc
Confidence 88899999999888877554
No 352
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.56 E-value=0.0005 Score=53.78 Aligned_cols=66 Identities=26% Similarity=0.508 Sum_probs=43.7
Q ss_pred CCeEEEEEEEe-ecCCCeEEEEeCCEeccCCC------CCCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701 140 EETVTFECKAS-GLPEPEIHWVHNGKPISQAP------PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 140 G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~ 205 (745)
|+.+.|.|.+. ++|++.++|+.++..+.... .........+.|.+..-..++...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 78999999885 58999999999998772100 01111112246777655556677899999987543
No 353
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.56 E-value=0.00034 Score=55.94 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=46.9
Q ss_pred eEeeCCCeEEEEEEEee-cCCCeEEEEeCCEe-----cc-----CCCCCCceee------cCceEEEccCCCCCCEEEEE
Q psy11701 135 INAAEEETVTFECKASG-LPEPEIHWVHNGKP-----IS-----QAPPNPRRKV------GPNRITIENLRKSDTGNYGC 197 (745)
Q Consensus 135 ~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~-----~~-----~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C 197 (745)
..+.+|++++|.|.... .....+.|+|.... +. ......+... ....|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35789999999999865 34568899985321 10 0111222222 22479999999999999999
Q ss_pred EEEeCC
Q psy11701 198 NATNSL 203 (745)
Q Consensus 198 ~~~~~~ 203 (745)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987653
No 354
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.55 E-value=0.00078 Score=52.59 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=40.3
Q ss_pred ecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeC
Q psy11701 46 LRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 46 ~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
..|+..+|.|.+.|+ |. ..++|.|||+++..+.. .....++ +.|.+. .++...|+|.+...
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 346778999999997 53 38899999999864321 1112222 245554 34555999999875
No 355
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.53 E-value=0.014 Score=56.75 Aligned_cols=193 Identities=17% Similarity=0.256 Sum_probs=105.8
Q ss_pred EEEEccCCCCCCEEEEEEEEeCCeeeE-EEEEEEEE-EecCeEEecCceeEeeCCCeEEEEEEEee-cCCC--eEEEEeC
Q psy11701 88 SLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSV-LAAPYFTVEPEFINAAEEETVTFECKASG-LPEP--EIHWVHN 162 (745)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~l~V-~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~--~v~W~~~ 162 (745)
.|.|.++...|+|.|+....+...... .+.+.+.+ +.+|.+.+.+.. +..|+...-.|.+.. +|+- .+.|+.|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 589999999999977666655443333 34444444 456667776654 679999999999977 4443 8999999
Q ss_pred CEeccCCCCCCcee---ec------CceEEEccCCCCCCEEEEEEEEeCCc-eEEE-E--EEEEEeecCCeeeeCCCceE
Q psy11701 163 GKPISQAPPNPRRK---VG------PNRITIENLRKSDTGNYGCNATNSLG-YVYK-D--VYVNVLAHAPEITEAPKDEY 229 (745)
Q Consensus 163 g~~~~~~~~~~~~~---~~------~~~L~i~~v~~~d~G~Y~C~~~~~~g-~~~~-~--~~l~v~~~~p~~~~~~~~~~ 229 (745)
|..+.......... .+ .++|.+.+...+..=..+|.+.-..+ .... + +.-.|. .+|.+. +.
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY-~~P~IS-----v~ 359 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVY-HHPRIS-----LA 359 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccc-cCCeEE-----EE
Confidence 99886443222221 11 12344433322233379999874333 2221 1 111122 234432 23
Q ss_pred EecCce-EEEEEEEeecCCCeEEEeeCCEEccCceEE--E-----eecCcEEEcc-cCCCC---CEEEEEEEEe
Q psy11701 230 TVDGKT-VVLTCRVFGAPKPEVNWIHNQKELTGGRYT--I-----LETGDLKITD-VAFAD---SGEYTCFARN 291 (745)
Q Consensus 230 v~~g~~-~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~-----~~~~~l~i~~-~~~~d---~G~Y~C~~~n 291 (745)
...|.- .+..|... ...+.|..++...++.... + ...+-..|.. ....| .-.|+|++..
T Consensus 360 FedG~AVCtA~CVP~---gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G 430 (490)
T PHA03271 360 FKDGYAICTIECVPS---GITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG 430 (490)
T ss_pred EeCCEEEEeccccCC---CcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence 334432 23445432 3589999877654332111 0 1123344444 23333 3589999863
No 356
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.51 E-value=0.00075 Score=52.89 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=48.7
Q ss_pred CCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEE
Q psy11701 32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGS 101 (745)
Q Consensus 32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~ 101 (745)
+|..+.+.+..... .++.++|.|.+.|+ |.. +|+|+|||+. ..+.. .....++ +.|.+........-.
T Consensus 1 ~P~v~~l~~~~~~~-~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 78 (95)
T cd04985 1 APTVFPLVPCCSSS-SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKES 78 (95)
T ss_pred CCeEEEeCCCcccc-CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCc
Confidence 47777777777765 46679999999987 433 8899999998 32211 1111122 134444333223458
Q ss_pred EEEEEEeCC
Q psy11701 102 YTCEVSNGV 110 (745)
Q Consensus 102 Y~C~~~~~~ 110 (745)
|+|++....
T Consensus 79 ytC~V~H~~ 87 (95)
T cd04985 79 FYCKVEHPS 87 (95)
T ss_pred EEEEEEeCC
Confidence 999998753
No 357
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.49 E-value=0.00084 Score=52.39 Aligned_cols=63 Identities=17% Similarity=0.365 Sum_probs=40.8
Q ss_pred eCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCc-eeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 138 AEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPR-RKVGP------NRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 138 ~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~-~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
..|+.++|.|.+.| +|. ..++|.+||+.+........ ....+ ..|.+. .++...|+|++.+..
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 34677899999999 554 48999999998764321111 11122 234443 345668999998764
No 358
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.47 E-value=0.00036 Score=51.76 Aligned_cols=60 Identities=35% Similarity=0.656 Sum_probs=45.1
Q ss_pred EEEEEEEeecCCCeeEEEECCEecCCCCCe------EeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRI------SQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110 (745)
Q Consensus 51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~------~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (745)
+.|.|.+.+.+...+.|++++......... ........|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999988777799999988776543321 111223479999999999999999998754
No 359
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.47 E-value=0.00021 Score=49.75 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=37.4
Q ss_pred EecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108 (745)
Q Consensus 45 v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (745)
-.-|.+|+|+|...+. .+.|.+|++.+.. .+..+.+.+.. +++|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g--------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQG--------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCC--------CCceEEeeccC-CCCceEEEEeCC
Confidence 3469999999976522 3999999966652 22345555666 899999999953
No 360
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.46 E-value=0.0012 Score=50.30 Aligned_cols=79 Identities=30% Similarity=0.452 Sum_probs=51.0
Q ss_pred CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCC-ceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG-SIRELIVNKGESTTTEVDKFVPASKNFARVLA 482 (745)
Q Consensus 404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a 482 (745)
+|.++.+.. ....++.+.|+++..... .+|.+.|........ .+..... ......+.+.+|.+++.|.|+|.|
T Consensus 3 ~p~~~~~~~-~~~~~~~v~W~~~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~Y~v~v~a 76 (83)
T smart00060 3 PPSNLRVTD-VTSTSVTLSWEPPPDDGI----TGYIVGYRVEYREEGSSWKEVNV-TPSSTSYTLTGLKPGTEYEFRVRA 76 (83)
T ss_pred CCCcEEEEE-EeCCEEEEEECCCCCCCC----CccEEEEEEEEecCCCccEEEEe-cCCccEEEEeCcCCCCEEEEEEEE
Confidence 444566665 556699999996533221 567776654433221 2222333 223578999999999999999999
Q ss_pred ecCCCC
Q psy11701 483 FNGAYN 488 (745)
Q Consensus 483 ~n~~G~ 488 (745)
.+..|.
T Consensus 77 ~~~~g~ 82 (83)
T smart00060 77 VNGAGE 82 (83)
T ss_pred EcccCC
Confidence 987554
No 361
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.43 E-value=0.0017 Score=50.52 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=41.1
Q ss_pred EecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCCcEEEE---ccCCCCCCEEEEEEEEeC
Q psy11701 45 ALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYGKSLII---KHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 45 v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~~~L~i---~~~~~~d~G~Y~C~~~~~ 109 (745)
+..|...+|.|.+.|+ |. ..++|+|||+++. +.. ... +.+.+..+ -.+...+...|.|.+...
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p-~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSF-SKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEE-CCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 4467888999999997 43 3889999999987 322 122 22222221 123456667899999874
No 362
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.41 E-value=0.00092 Score=55.53 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=48.2
Q ss_pred cCceeEeeCCCeEEEEEEEeecC------CCeEEEEeCCEe------cc--C------CCCCCceee------cCceEEE
Q psy11701 131 EPEFINAAEEETVTFECKASGLP------EPEIHWVHNGKP------IS--Q------APPNPRRKV------GPNRITI 184 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p------~~~v~W~~~g~~------~~--~------~~~~~~~~~------~~~~L~i 184 (745)
.|....+.+|+.++|.|...... ...+.|++.... +. . .....++.. .+..|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46677889999999999875321 246999985321 10 0 011123222 2347999
Q ss_pred ccCCCCCCEEEEEEEEeC
Q psy11701 185 ENLRKSDTGNYGCNATNS 202 (745)
Q Consensus 185 ~~v~~~d~G~Y~C~~~~~ 202 (745)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 363
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.41 E-value=0.00031 Score=55.15 Aligned_cols=73 Identities=15% Similarity=0.349 Sum_probs=43.7
Q ss_pred EeeccceeEecCCcEEEEEEEeec--CCC-eeEEEECCEe-cCCCCCeEeccCCc------EEEEccCCCCCCEEEEEEE
Q psy11701 37 YVTRKKEVALRNKKVELFCIFGGT--PLP-QTIWSKDGVP-INPSDRISQGNYGK------SLIIKHVEFSDQGSYTCEV 106 (745)
Q Consensus 37 ~~~~~~~~v~~G~~~~l~C~~~g~--p~~-~v~W~~~~~~-i~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~~ 106 (745)
+.+|....+..|+.++|.|.+.|+ |.. .|+|.||+.. +.........+.++ .|.+..-...+.-.|+|.|
T Consensus 3 ~~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V 82 (96)
T cd07696 3 LLPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKV 82 (96)
T ss_pred ecCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEE
Confidence 345566667789999999999998 433 7899998743 32111111112222 3444332333334899999
Q ss_pred EeC
Q psy11701 107 SNG 109 (745)
Q Consensus 107 ~~~ 109 (745)
...
T Consensus 83 ~H~ 85 (96)
T cd07696 83 THP 85 (96)
T ss_pred ECC
Confidence 865
No 364
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.38 E-value=0.00049 Score=54.05 Aligned_cols=73 Identities=15% Similarity=0.296 Sum_probs=44.4
Q ss_pred cCceeEeeCCCeEEEEEEEeec--CC-CeEEEEeCCEeccCCCCCCceeecCc------eEEEccCCCCCCEEEEEEEEe
Q psy11701 131 EPEFINAAEEETVTFECKASGL--PE-PEIHWVHNGKPISQAPPNPRRKVGPN------RITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~--p~-~~v~W~~~g~~~~~~~~~~~~~~~~~------~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
.|....+..|+.++|.|.+.|. |. ..++|.|||...............++ .|.+.....++.-.|+|.|.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3455556779999999999987 44 38999998743321111111222233 344444333445579999987
Q ss_pred CC
Q psy11701 202 SL 203 (745)
Q Consensus 202 ~~ 203 (745)
..
T Consensus 85 ~~ 86 (96)
T cd07696 85 PD 86 (96)
T ss_pred CC
Confidence 64
No 365
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.36 E-value=0.00067 Score=54.12 Aligned_cols=68 Identities=21% Similarity=0.426 Sum_probs=43.0
Q ss_pred EeeCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCC--Cceee--cCc------eEEEccCCCCCCEEEEEEEEeCC
Q psy11701 136 NAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQAPPN--PRRKV--GPN------RITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 136 ~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~--~~~~~--~~~------~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
.+..|..++|.|.+.| +|.. .++|++||+.+...... ..... +++ .|.|..-...+...|+|.|.+..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 3456789999999999 4443 78999999987643211 01111 122 45554433345667999998764
No 366
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=97.30 E-value=0.013 Score=55.53 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=92.0
Q ss_pred cCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEE-ccCceeEEEecccccCcceeEEEEEecCCCCCCCCc
Q psy11701 415 DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV-NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493 (745)
Q Consensus 415 ~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~ 493 (745)
-+..+.+.|.+.+ +-+...|.|+....+. . ..+..+ ...-.-.+.-.+|.++..|.+.|.|.+..+.-..+.
T Consensus 82 ~~~~~~~~w~~~~----d~~~~~Y~i~~~~gD~-~--f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf 154 (343)
T COG3401 82 RPKSVKVFWSPHP----DVSVGKYIIQRQNGDG-K--FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSF 154 (343)
T ss_pred CcceeeecccccC----CCCCCeEEEEEecCch-h--hhhhhHHHhccchhheecccccccceeeeEEeecccccceeee
Confidence 3456889999843 3345578886544333 2 211111 011122333447889999999999988766544443
Q ss_pred ceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC
Q psy11701 494 IISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE 573 (745)
Q Consensus 494 ~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 573 (745)
...-.+....|..-.++++.....+.+.|+|+.+...+ .|+|+-...+....+-... ...+.......+|
T Consensus 155 ~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~~----yy~IY~~~~g~e~~~~ia~-----t~~n~y~d~~egl- 224 (343)
T COG3401 155 TGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAED----YYRIYASDSGNEEYGFIAQ-----TTENSYYDVKEGL- 224 (343)
T ss_pred eeeecccccCCceeeeeeeecCCCCcceeeccCccccc----eEEEeccCCccccccceee-----ccccchhhhhhcc-
Confidence 22222344555555666677777889999999876432 6777655544433332221 1223233334444
Q ss_pred CCccEEEEEEEEecCCC-CCCc
Q psy11701 574 PSTKYRIHLAGYTKAGD-GAES 594 (745)
Q Consensus 574 p~t~Y~~~V~a~n~~G~-g~~S 594 (745)
|..|...|.+....|. +..+
T Consensus 225 -ga~~~y~VTtVd~~~~es~lp 245 (343)
T COG3401 225 -GAVEYYKVTTVDNTGFESDLP 245 (343)
T ss_pred -CceeEEEEEEEcCCcceeccC
Confidence 6677777888775543 4443
No 367
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.29 E-value=0.00063 Score=54.82 Aligned_cols=66 Identities=18% Similarity=0.373 Sum_probs=44.2
Q ss_pred EeeCCCeEEEEEEEeecCCCeEEEEeCCE----e---c---cCC-C--------CCCceee----cCceEEEccCCCCCC
Q psy11701 136 NAAEEETVTFECKASGLPEPEIHWVHNGK----P---I---SQA-P--------PNPRRKV----GPNRITIENLRKSDT 192 (745)
Q Consensus 136 ~v~~G~~~~l~C~~~~~p~~~v~W~~~g~----~---~---~~~-~--------~~~~~~~----~~~~L~i~~v~~~d~ 192 (745)
.+.+|++++|.|.........+.|+|... . + ... . ...++.. ....|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 36789999999998654445799998432 1 1 010 0 0112221 234699999999999
Q ss_pred EEEEEEEEe
Q psy11701 193 GNYGCNATN 201 (745)
Q Consensus 193 G~Y~C~~~~ 201 (745)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998763
No 368
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.29 E-value=0.0011 Score=51.80 Aligned_cols=70 Identities=11% Similarity=0.281 Sum_probs=41.9
Q ss_pred CceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeec------CceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 132 PEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVG------PNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
|....+..+..++|.|.+.| +|. ..++|.+||+.+............ .+.|.|..-. ....|+|.+.+..
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 33334445678999999999 554 389999999987543221111111 1234443321 2345999998853
No 369
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.28 E-value=0.0015 Score=51.96 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=47.4
Q ss_pred EeeccceeEecCCcEEEEEEEeecCC---CeeEEEE--CCEecC--------------CCCCeEec----cCCcEEEEcc
Q psy11701 37 YVTRKKEVALRNKKVELFCIFGGTPL---PQTIWSK--DGVPIN--------------PSDRISQG----NYGKSLIIKH 93 (745)
Q Consensus 37 ~~~~~~~~v~~G~~~~l~C~~~g~p~---~~v~W~~--~~~~i~--------------~~~~~~~~----~~~~~L~i~~ 93 (745)
+.++....+..|..++|.|.+.|+-. -.+.|.| ++ .+. ...++... .+.-.|.|.+
T Consensus 2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~ 80 (115)
T cd05721 2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQN 80 (115)
T ss_pred eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcC
Confidence 34566677889999999999977643 3688988 33 210 12222221 1123799999
Q ss_pred CCCCCCEEEEEEE
Q psy11701 94 VEFSDQGSYTCEV 106 (745)
Q Consensus 94 ~~~~d~G~Y~C~~ 106 (745)
++.+|.+.|.|..
T Consensus 81 L~a~DTa~Y~Ca~ 93 (115)
T cd05721 81 LRANQTDIYFCKI 93 (115)
T ss_pred CCHHHCeEEEEEe
Confidence 9999999999987
No 370
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.26 E-value=0.0016 Score=52.82 Aligned_cols=76 Identities=17% Similarity=0.332 Sum_probs=48.1
Q ss_pred CceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCce--e------ecCceEEEccCCCCC-CEEEEEEEE
Q psy11701 132 PEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRR--K------VGPNRITIENLRKSD-TGNYGCNAT 200 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~--~------~~~~~L~i~~v~~~d-~G~Y~C~~~ 200 (745)
|....+.+++.++|.|.+.| +|. ..++|++||+.+......... . ...+.|.|......+ ...|+|.+.
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~ 89 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ 89 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence 33344556788999999998 555 499999999987643221111 1 112345555544434 557999999
Q ss_pred eCCceEE
Q psy11701 201 NSLGYVY 207 (745)
Q Consensus 201 ~~~g~~~ 207 (745)
+......
T Consensus 90 H~g~~~~ 96 (115)
T cd05769 90 FYGGTDT 96 (115)
T ss_pred EeCCccc
Confidence 8755443
No 371
>KOG4152|consensus
Probab=97.25 E-value=0.0016 Score=64.50 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=79.1
Q ss_pred cccccCcceeEEEEEecCCCCCCCCcceEEeCC-CCCCCCCCceeEEEcCCceEEEEeeCCCCC-CCceeeEEEEEEEcC
Q psy11701 468 DKFVPASKNFARVLAFNGAYNGPPSEIISFVTP-EGVPGTVQSLEAIPLGSSAFYLKWVKPEQP-NGVLMGYKIKYQSVK 545 (745)
Q Consensus 468 ~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~-~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~-~g~i~~Y~v~~~~~~ 545 (745)
..|.++..|.|+|.|.|..|.|++|....+.|. ++.|++|..++... +...|.|.|.+|..+ .|.|..|..+.--..
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~ylAi~t 730 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSPYLAIIT 730 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeehhhHhhh
Confidence 468899999999999999999999998888774 45666666665444 556799999999875 457777766543211
Q ss_pred C---cccCCcccccc--------cccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701 546 G---TKVGPLLERLP--------YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593 (745)
Q Consensus 546 ~---~~~~~~~~~~~--------~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~ 593 (745)
. ....+..-... .+..+. .-.-+.+...+-.--|||.|.|..|.|+.
T Consensus 731 q~~~~~~sql~fmr~ycg~~t~c~vt~g~-l~tA~~d~t~~paivfri~aknekGyGpa 788 (830)
T KOG4152|consen 731 QAGATGVSQLPFMRSYCGIITTCVVTSGK-LITAVPDITTGPAIVFRIVAKNEKGYGPA 788 (830)
T ss_pred hhhccCccccceeeeecccceeeEEeccc-ceeeccccccCcceEEEEEecCCCCCCcc
Confidence 1 11111000000 000110 11112233445567899999999999987
No 372
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.22 E-value=0.00099 Score=54.13 Aligned_cols=65 Identities=22% Similarity=0.468 Sum_probs=43.4
Q ss_pred EeeCCCeEEEEEEEeec-CCCeEEEEeCCEe---------c--cC--------CCCCCceee---c---CceEEEccCCC
Q psy11701 136 NAAEEETVTFECKASGL-PEPEIHWVHNGKP---------I--SQ--------APPNPRRKV---G---PNRITIENLRK 189 (745)
Q Consensus 136 ~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~---------~--~~--------~~~~~~~~~---~---~~~L~i~~v~~ 189 (745)
.+.+|++++|.|...+. ....+.||+.... + .. .....++.. . ...|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 57899999999998763 3348999984221 0 00 000122221 1 23699999999
Q ss_pred CCCEEEEEEEE
Q psy11701 190 SDTGNYGCNAT 200 (745)
Q Consensus 190 ~d~G~Y~C~~~ 200 (745)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 373
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.22 E-value=0.00082 Score=52.53 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=49.0
Q ss_pred CCCeeEeeccceeEecCCcEEEEEEEeecC---CCeeEEEECCEecCCCC-CeEeccCC-----cEEEEccCCCCCCEEE
Q psy11701 32 APKQQYVTRKKEVALRNKKVELFCIFGGTP---LPQTIWSKDGVPINPSD-RISQGNYG-----KSLIIKHVEFSDQGSY 102 (745)
Q Consensus 32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p---~~~v~W~~~~~~i~~~~-~~~~~~~~-----~~L~i~~~~~~d~G~Y 102 (745)
+|...+.+|....+..+..++|+|.+.|+- ...|.|.+||.. .... ....+.++ +.|.|..-.......|
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y 81 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF 81 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence 477777777777777899999999998864 238999999875 2111 11111122 2455542222333479
Q ss_pred EEEEEeCC
Q psy11701 103 TCEVSNGV 110 (745)
Q Consensus 103 ~C~~~~~~ 110 (745)
+|+|.+..
T Consensus 82 tC~V~H~~ 89 (99)
T cd04986 82 ACTVTHPE 89 (99)
T ss_pred EEEEECCC
Confidence 99998653
No 374
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.22 E-value=0.0011 Score=51.77 Aligned_cols=63 Identities=30% Similarity=0.519 Sum_probs=40.5
Q ss_pred CCcEEEEEEE-eecCCCeeEEEECCEecCCCCC-eE-eccCC-----cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701 48 NKKVELFCIF-GGTPLPQTIWSKDGVPINPSDR-IS-QGNYG-----KSLIIKHVEFSDQGSYTCEVSNGV 110 (745)
Q Consensus 48 G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~-~~-~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (745)
|+.+.|+|.+ .|+|++.++|+.++..+..... .. ....+ +.|.+..-..++...++|.|.+..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence 7899999988 6779999999999988721111 11 11111 256665433344558999998864
No 375
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.21 E-value=0.0015 Score=53.96 Aligned_cols=71 Identities=24% Similarity=0.379 Sum_probs=47.5
Q ss_pred cCceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CE-e--c---c--------CCCCCCceee---c-C--ceEEEcc
Q psy11701 131 EPEFINAAEEETVTFECKASGLP--EPEIHWVHN--GK-P--I---S--------QAPPNPRRKV---G-P--NRITIEN 186 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~-~--~---~--------~~~~~~~~~~---~-~--~~L~i~~ 186 (745)
+|....+.+|++++|.|...+.. ...+.|||- |+ + + . ......++.. . . ..|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 46667889999999999886532 457999983 21 1 1 0 0011123322 1 1 2699999
Q ss_pred CCCCCCEEEEEEEEe
Q psy11701 187 LRKSDTGNYGCNATN 201 (745)
Q Consensus 187 v~~~d~G~Y~C~~~~ 201 (745)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998864
No 376
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.16 E-value=0.0018 Score=49.81 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=43.5
Q ss_pred EecCCcEEEEEEEee-cCC--CeeEEEECCEecCCCCCeE------eccCCcEEEEccCCCCCCE-EEEEEEEeC
Q psy11701 45 ALRNKKVELFCIFGG-TPL--PQTIWSKDGVPINPSDRIS------QGNYGKSLIIKHVEFSDQG-SYTCEVSNG 109 (745)
Q Consensus 45 v~~G~~~~l~C~~~g-~p~--~~v~W~~~~~~i~~~~~~~------~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 109 (745)
+.+|..++|.|.+.+ .|. .++.|+|.+..+....-.. .......++|.. +.+|.| .|+|+|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 579999999999954 454 5899999777766432111 112234566644 588888 899999743
No 377
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.15 E-value=0.0034 Score=49.21 Aligned_cols=64 Identities=19% Similarity=0.401 Sum_probs=39.8
Q ss_pred CCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCC-CCCceeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 139 EEETVTFECKASG-LPE-PEIHWVHNGKPISQAP-PNPRRKVGP------NRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 139 ~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~-~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
.++.++|.|.+.| +|. ..++|+|||+. .... ........+ +.|.+..........|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 5677999999999 454 48999999997 3221 111111112 244544433333567999999864
No 378
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.12 E-value=0.0014 Score=50.19 Aligned_cols=57 Identities=25% Similarity=0.470 Sum_probs=37.9
Q ss_pred cEEEEEEEeecCCC--eeEEEECCE--e---cC-------------CCCCeEecc----CCcEEEEccCCCCCCEEEEEE
Q psy11701 50 KVELFCIFGGTPLP--QTIWSKDGV--P---IN-------------PSDRISQGN----YGKSLIIKHVEFSDQGSYTCE 105 (745)
Q Consensus 50 ~~~l~C~~~g~p~~--~v~W~~~~~--~---i~-------------~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~ 105 (745)
+++|.|.......+ .+.|++... . |. ...|+.+.. ...+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998655443 789988431 1 10 123444322 224799999999999999997
Q ss_pred E
Q psy11701 106 V 106 (745)
Q Consensus 106 ~ 106 (745)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 379
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.06 E-value=0.0019 Score=45.34 Aligned_cols=50 Identities=26% Similarity=0.346 Sum_probs=37.4
Q ss_pred cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701 47 RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108 (745)
Q Consensus 47 ~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (745)
..+.|.|+|.. ..+|.|++ |..+.... ..+|.+-+...+-.|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~-------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVS-------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccccc-------ccEEeccCcccCCCcceEecCcc
Confidence 35689999965 24699999 55554221 45688888888999999999865
No 380
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.03 E-value=0.0025 Score=48.92 Aligned_cols=63 Identities=22% Similarity=0.465 Sum_probs=43.4
Q ss_pred CCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCCCcee-ecCc------eEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 139 EEETVTFECKASG-LPEP-EIHWVHNGKPISQAPPNPRRK-VGPN------RITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 139 ~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~~~~~-~~~~------~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
.++.++|.|.+.+ +|.. .|+|+++|+.+.......... ..++ .|.+. ..+...|+|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 4899999999998 5544 899999999886443222222 2233 34444 5666689999987653
No 381
>KOG4367|consensus
Probab=97.03 E-value=0.00053 Score=65.86 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=62.9
Q ss_pred EcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701 514 PLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593 (745)
Q Consensus 514 ~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~ 593 (745)
....++++|+|..|...+.++.||.++.-..++.+..+.. .+..+-.++++|--++.|.-||.|+|..|.++.
T Consensus 449 ~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy-------~g~etmctvdglhfns~y~arvka~n~tg~s~y 521 (699)
T KOG4367|consen 449 CTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVY-------VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPY 521 (699)
T ss_pred hccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEE-------ecCceeEEecceecchhHHHHHHHhhccCCCcc
Confidence 3467899999997776677999999998766544433322 456688999999999999999999999999999
Q ss_pred ccee
Q psy11701 594 SKYL 597 (745)
Q Consensus 594 S~~~ 597 (745)
|+.+
T Consensus 522 s~tl 525 (699)
T KOG4367|consen 522 SKTL 525 (699)
T ss_pred ccee
Confidence 9776
No 382
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.00 E-value=0.0022 Score=49.15 Aligned_cols=61 Identities=23% Similarity=0.510 Sum_probs=42.1
Q ss_pred cCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCCeE---eccCC-----cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701 47 RNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDRIS---QGNYG-----KSLIIKHVEFSDQGSYTCEVSNGV 110 (745)
Q Consensus 47 ~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~~~---~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (745)
.++.++|.|.+.|+ |.. +|.|+++|+.+....... ...++ +.|.+. ..+...|+|.|.+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 38999999999887 544 799999999987543321 11222 245555 555558999998753
No 383
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.00 E-value=0.0035 Score=48.71 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=44.2
Q ss_pred eeccceeEecCCcEEE-EEEE-eecCCCeeEEEECCEecCCCCCeEeccCC-----cEEEEccCCCCCCEEEEEEEEeC
Q psy11701 38 VTRKKEVALRNKKVEL-FCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l-~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
.......+.+|+.+.| .|.+ .|.|+++|.|+.+..... ........++ +.|.+.....+|.-.++|.+.+.
T Consensus 6 ~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 6 SPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred CCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 3445566889999999 9998 778999999998633322 1111112222 13455333334444899999875
No 384
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.98 E-value=0.002 Score=50.43 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=43.6
Q ss_pred CceeEeeCCCeEEEEEEEee-c-CC-CeEEEEeCCEeccCCCCCCceeecCc------eEEEccCCCCCCEEEEEEEEeC
Q psy11701 132 PEFINAAEEETVTFECKASG-L-PE-PEIHWVHNGKPISQAPPNPRRKVGPN------RITIENLRKSDTGNYGCNATNS 202 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~~-~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~~------~L~i~~v~~~d~G~Y~C~~~~~ 202 (745)
|....+..+..++|.|.+.+ . |. ..|+|.++|.. . ..........++ .|.+..-.......|+|.|.+.
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 44445667899999999998 3 43 48999999875 2 111111222233 4444433334455799999876
Q ss_pred C
Q psy11701 203 L 203 (745)
Q Consensus 203 ~ 203 (745)
.
T Consensus 89 ~ 89 (99)
T cd04986 89 E 89 (99)
T ss_pred C
Confidence 4
No 385
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.93 E-value=0.45 Score=46.38 Aligned_cols=298 Identities=16% Similarity=0.214 Sum_probs=151.3
Q ss_pred ceeEecCCcE-EEEEEEeecC-CCeeEEEECCEe---------cCCCCC--eE-eccCC--cEEEEccCCCCCCEEEEEE
Q psy11701 42 KEVALRNKKV-ELFCIFGGTP-LPQTIWSKDGVP---------INPSDR--IS-QGNYG--KSLIIKHVEFSDQGSYTCE 105 (745)
Q Consensus 42 ~~~v~~G~~~-~l~C~~~g~p-~~~v~W~~~~~~---------i~~~~~--~~-~~~~~--~~L~i~~~~~~d~G~Y~C~ 105 (745)
...++.|+.+ .|+|...... +-++...|.+.. |.+... .. -++.. -++.+.+++.+|.|.|+|.
T Consensus 20 nIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCI 99 (500)
T PHA02914 20 NIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCI 99 (500)
T ss_pred eEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEE
Confidence 5567788777 9999984433 336777763221 111100 00 00001 2578889999999999999
Q ss_pred EEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCe-EEEEEEEee---cCCCeEEEEeCCEeccCCCCCCceeecCce
Q psy11701 106 VSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEET-VTFECKASG---LPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181 (745)
Q Consensus 106 ~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~-~~l~C~~~~---~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~ 181 (745)
......+.....+.|.| .|.+...- ...|+. ..+-|..+. ...+.+.-.-+|..+..............+
T Consensus 100 FYLn~~EtyrH~I~vrV--mPKId~t~----~~~~dk~~~y~CNrtrtm~dd~vKv~~iaGGV~v~~~~~g~~~fnsd~s 173 (500)
T PHA02914 100 FYLGDNESHKHEILVRK--APKIDTTF----LEFNDKHTCICCKIDKPMNQDALKVFFVAGGVNVDGNFLGKKDFNNDPS 173 (500)
T ss_pred EEeCCceeEEEEEEEEE--ccceeeee----eecCCCcEEEEEecCcccccCceeEEEEeccEEEcCeeeccccccCCCc
Confidence 98765555555555554 55543221 223333 334466543 122344444455555532211111111111
Q ss_pred E-E---EccCCCC-CCEEEEEEEEeCCceEEEE--------EE----------EEEee--------------------cC
Q psy11701 182 I-T---IENLRKS-DTGNYGCNATNSLGYVYKD--------VY----------VNVLA--------------------HA 218 (745)
Q Consensus 182 L-~---i~~v~~~-d~G~Y~C~~~~~~g~~~~~--------~~----------l~v~~--------------------~~ 218 (745)
. . ..+-... -+-.-.|-++......+.. +. ..|.. ..
T Consensus 174 ~~~v~~~Adksy~D~Trev~C~VSY~G~~~e~~iSy~~~~~vn~s~i~~~~~p~n~~~~~~~~~~~~~~s~~~~~~ee~~ 253 (500)
T PHA02914 174 NRTVKLCADKSHDDTAREALCGVEYFGALKELNISYDGTNAVNISEILSKVCPENVINSKVCGDNGSKDSELLEDEEEED 253 (500)
T ss_pred eeEEEEecCCCCccchhheEEEEEEccceeEEEeeecCccceeHHHhhhhcCCcccccccccccCCcccchhhcchhhcC
Confidence 1 1 1121112 2334666665332111110 00 00000 00
Q ss_pred --------Cee--eeCC-CceEEecCceEEEEEEEee--c-CCCeEEEeeCCEEcc------------------CceEEE
Q psy11701 219 --------PEI--TEAP-KDEYTVDGKTVVLTCRVFG--A-PKPEVNWIHNQKELT------------------GGRYTI 266 (745)
Q Consensus 219 --------p~~--~~~~-~~~~v~~g~~~~l~C~~~~--~-p~~~i~W~~~~~~~~------------------~~~~~~ 266 (745)
..+ ...+ ....+..|..+.|.|...- + .-..+.|+.-+-++. ...+.+
T Consensus 254 ~y~~~~~~~~v~y~kk~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i 333 (500)
T PHA02914 254 DYEESGDYSEVTYDKKKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMI 333 (500)
T ss_pred ChhhcCCcceEEecccccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEE
Confidence 011 1122 2234566999999999753 2 234688986543221 112222
Q ss_pred ---------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCC
Q psy11701 267 ---------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSL 337 (745)
Q Consensus 267 ---------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~ 337 (745)
+..++|+|.++....+|-|.|+|....-......-|.|.....+. ..........+.|.+......
T Consensus 334 ~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~-----W~~e~~n~T~V~Cyv~sy~~k 408 (500)
T PHA02914 334 SAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFK-----WNTEGDNETKVACYAAQYDMQ 408 (500)
T ss_pred EEecccccchhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEE-----EEeccCceEEEEEEEEecccC
Confidence 223479999999999999999998764444444445554322111 001113345678988776554
Q ss_pred CcEEEEeeCCeec
Q psy11701 338 KLSIVWLRGSEPI 350 (745)
Q Consensus 338 ~~~i~W~~~~~~~ 350 (745)
.+.+.|.-+|...
T Consensus 409 p~si~wkvnGV~~ 421 (500)
T PHA02914 409 PFSILWKSNGVSF 421 (500)
T ss_pred CceeEEEEccEEe
Confidence 5889999887654
No 386
>KOG1480|consensus
Probab=96.90 E-value=0.00051 Score=71.54 Aligned_cols=90 Identities=28% Similarity=0.440 Sum_probs=70.1
Q ss_pred CeeEeeccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701 34 KQQYVTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112 (745)
Q Consensus 34 ~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 112 (745)
+.+...|....|.+++.+.|.|.. .+.|...+.|+|++..+.+...+.. .....|.+..+...|.|+|+|+|.+-.+.
T Consensus 130 k~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~-~~d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 130 KHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR-ASDHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred HhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh-hhcCCccccchhhhhcccceeeeehhhcc
Confidence 346677888899999999999998 7778889999999988887433332 33456999999999999999999987766
Q ss_pred eEEEEEEEEEEe
Q psy11701 113 AKSYSIDLSVLA 124 (745)
Q Consensus 113 ~~~~~~~l~V~~ 124 (745)
..+-.+.+.|..
T Consensus 209 r~~~~~~v~vyv 220 (909)
T KOG1480|consen 209 RKSDPATVQVYV 220 (909)
T ss_pred ccccceEEEEEE
Confidence 665555555543
No 387
>KOG4228|consensus
Probab=96.83 E-value=0.0058 Score=67.36 Aligned_cols=252 Identities=17% Similarity=0.094 Sum_probs=149.7
Q ss_pred EEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEE
Q psy11701 378 QYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457 (745)
Q Consensus 378 ~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~ 457 (745)
.|+|.+....|-......+.+..-|..|..+.+.. ....++.+.|..++. . ...|.+.++....+ ...+.
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~-~~~~~~~~~~~~~~t-~----~~~y~v~~~~~~s~---~~~~~- 70 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTG-STATSWVQAELLGST-W----PNYYQVIFKALSSG---YGYID- 70 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCccccc-ccccceeehhhccCC-C----hhhhheeeeEeccC---cceee-
Confidence 38999998888888888888876666665666655 677888888988654 2 33466655554443 11111
Q ss_pred ccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCCCCCCceee
Q psy11701 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMG 536 (745)
Q Consensus 458 ~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~ 536 (745)
......+....+.+...+.+ .+.|..|.+..+.+..-++.+..+. .+....+.........++|..+....+
T Consensus 71 -~~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 143 (1087)
T KOG4228|consen 71 -VDLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVG---- 143 (1087)
T ss_pred -ccceeecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCccccccccc----
Confidence 22333466677778888877 8889999998888777766655443 344444444455556666665432111
Q ss_pred EEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCc
Q psy11701 537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPN 616 (745)
Q Consensus 537 Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~ 616 (745)
+.+.+..|.++++..+...+....+..+.....-.
T Consensus 144 ---------------------------------------------~~~~~~~~~~~~~t~i~i~~~~~~p~~~~~~~~~~ 178 (1087)
T KOG4228|consen 144 ---------------------------------------------PLAIASPGLGPPSTYIQITTNANSPIQPGEEEEYT 178 (1087)
T ss_pred ---------------------------------------------ccccCCcccCCCCceEEEeccCCCCCCCCcceEEE
Confidence 45555556666543333332222222222334456
Q ss_pred ceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEE
Q psy11701 617 NLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696 (745)
Q Consensus 617 ~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~ 696 (745)
+++++|.++.... +..|.+-...+ .+.|.+++.
T Consensus 179 ~it~~w~~~~~~~----~~~ykl~~~~~--------------------------d~~~~~~v~----------------- 211 (1087)
T KOG4228|consen 179 TITGSWSPPHAVS----LDTYKLLHLDP--------------------------DTGYEISVT----------------- 211 (1087)
T ss_pred EEEecCCCCCccc----chhhhhhhcCC--------------------------cccceeeee-----------------
Confidence 7788887655432 35666543322 233444332
Q ss_pred ecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCC
Q psy11701 697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 739 (745)
Q Consensus 697 ~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~ 739 (745)
..........+|.|...|.++..+....+.+.....+.+++-
T Consensus 212 -~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~ 253 (1087)
T KOG4228|consen 212 -LTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQL 253 (1087)
T ss_pred -ccCCCCCcccCCCCcccccccccCccccccCCCCcceEEEeh
Confidence 122333444578888888888888888877777666666653
No 388
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.80 E-value=0.0023 Score=44.70 Aligned_cols=52 Identities=31% Similarity=0.496 Sum_probs=36.0
Q ss_pred eCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701 138 AEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS 202 (745)
Q Consensus 138 ~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 202 (745)
..|.+|+|+|.... ..+.|++|+..+... ...+.+.+-. ++.|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~---------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGS---------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCC---CCceEEeCCccCCCC---------CceEEeeccC-CCCceEEEEeCCC
Confidence 46999999995442 239999999666531 2244444545 8899999999643
No 389
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.77 E-value=0.56 Score=45.06 Aligned_cols=130 Identities=12% Similarity=0.160 Sum_probs=81.1
Q ss_pred CceeEEEecccccCcceeEEEEEecCCCCCCCCcceE-EeCCC---CCCCCCCceeEEE----cCCceEEEEeeCCCCCC
Q psy11701 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIIS-FVTPE---GVPGTVQSLEAIP----LGSSAFYLKWVKPEQPN 531 (745)
Q Consensus 460 ~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~-~~t~~---~~P~~p~~~~~~~----~~~~~i~l~W~~p~~~~ 531 (745)
.+-..+.+.++.++..|.+++.+.|... +..+.-+. .+|.+ .-|.-|.+..+.. .+-++++|.|.+..+..
T Consensus 125 ~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~ 203 (300)
T PF10179_consen 125 EGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS 203 (300)
T ss_pred cceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC
Confidence 3556788999999999999998877543 33333333 33332 2345566666643 35689999999765532
Q ss_pred CceeeEEEEEEEcCCc--------ccCCc--------c----cccccc------cCCCcceeeecCCCCCccEEEEEEEE
Q psy11701 532 GVLMGYKIKYQSVKGT--------KVGPL--------L----ERLPYI------SDPTTTSAKLAGLEPSTKYRIHLAGY 585 (745)
Q Consensus 532 g~i~~Y~v~~~~~~~~--------~~~~~--------~----~~~~~~------~~~~~~~~~l~~L~p~t~Y~~~V~a~ 585 (745)
..|-|..+..... ..... . ...++- ........+|.+|+||+.|-|.|++.
T Consensus 204 ---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~ 280 (300)
T PF10179_consen 204 ---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVN 280 (300)
T ss_pred ---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEe
Confidence 5688877755443 00000 0 000010 01223456899999999999999998
Q ss_pred ecCCCCCC
Q psy11701 586 TKAGDGAE 593 (745)
Q Consensus 586 n~~G~g~~ 593 (745)
-..|.+-+
T Consensus 281 ~~~G~sl~ 288 (300)
T PF10179_consen 281 GPSGQSLP 288 (300)
T ss_pred cCCCceee
Confidence 77776655
No 390
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=96.74 E-value=1.1 Score=48.18 Aligned_cols=275 Identities=17% Similarity=0.172 Sum_probs=160.0
Q ss_pred ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEE--eCCee---eEEE
Q psy11701 42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS--NGVGE---AKSY 116 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~--~~~g~---~~~~ 116 (745)
+..+..|+.+.|.+.+.|.-...+.+.-+|..+...+. . . ...+ +.+++.+|.|.-.+. +.... ....
T Consensus 299 ~s~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y-~--~-~n~~---~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~ 371 (667)
T PRK14081 299 SSPQLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGY-I--R-NNIY---TWKPKIAGKYSITLWVKDISSKGEYEDKS 371 (667)
T ss_pred CCCeecCceEEEEEEecCCCceEEEEEECCcEEeeccc-c--c-cceE---EEeeCCCceEEEEEEEEcCcCcccccceE
Confidence 44567899999999998876555665445544431111 1 0 1123 334567899988775 22111 1125
Q ss_pred EEEEEEEec---Ce-E--EecCceeEeeCCCeEEEEEEEeecCCC--eEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701 117 SIDLSVLAA---PY-F--TVEPEFINAAEEETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188 (745)
Q Consensus 117 ~~~l~V~~~---p~-~--~~~~~~~~v~~G~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~ 188 (745)
.+...+... |. + ...+....+..|+++.|.|.+.|.-.. .+.-.++|..+..... ..+..+.+ .
T Consensus 372 ~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y-----~~~~~~~f---~ 443 (667)
T PRK14081 372 SIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDY-----GKNNWVNF---I 443 (667)
T ss_pred EEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeec-----ccccEEEE---E
Confidence 566666653 42 2 122334567789999999999875444 3444558877653211 12334444 4
Q ss_pred CCCCEEEEEEEEeCCce------EEEEEEEEEeecCCe-ee--eCCCceEEecCceEEEEEEEeecCCCeEE--EeeCCE
Q psy11701 189 KSDTGNYGCNATNSLGY------VYKDVYVNVLAHAPE-IT--EAPKDEYTVDGKTVVLTCRVFGAPKPEVN--WIHNQK 257 (745)
Q Consensus 189 ~~d~G~Y~C~~~~~~g~------~~~~~~l~v~~~~p~-~~--~~~~~~~v~~g~~~~l~C~~~~~p~~~i~--W~~~~~ 257 (745)
+.-+|.|+..+.-...- ....+.+.|....|. +. +.+.......|+.+++.|.+++.....+. -..+|.
T Consensus 444 P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~ 523 (667)
T PRK14081 444 PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGH 523 (667)
T ss_pred ECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCE
Confidence 47899999988743322 234577888765564 43 33555567789999999999886544333 334555
Q ss_pred EccCceEEEeecCcEEEcccCCCCCEEEEEEEEeC--Cce----EEEEEEEEEeecceeecC---CCcEEEecCCeEEEE
Q psy11701 258 ELTGGRYTILETGDLKITDVAFADSGEYTCFARNK--LGT----AQGSGSLTVKEHTHITDQ---PEDYEVEAGQSATFR 328 (745)
Q Consensus 258 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~--~g~----~~~~~~l~v~~~p~~~~~---p~~~~~~~g~~~~l~ 328 (745)
......+. ....+.+. +..+|.|+..+... ... ....+.+.|..+..+... ........++.+++.
T Consensus 524 ~v~~t~Ys--~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~ 598 (667)
T PRK14081 524 KVEETDYI--KNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFS 598 (667)
T ss_pred EEEEeecc--ccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEE
Confidence 44322221 12234443 45689998876532 221 245667777765433322 234456678888888
Q ss_pred EEEEecCC
Q psy11701 329 CNAVSDPS 336 (745)
Q Consensus 329 C~~~~~~~ 336 (745)
....|...
T Consensus 599 ~~~~gg~~ 606 (667)
T PRK14081 599 VKSEGGKD 606 (667)
T ss_pred EEccCCCc
Confidence 87776654
No 391
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.74 E-value=0.0043 Score=43.61 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=37.7
Q ss_pred CCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 139 ~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
..+.+.|.|.. ..+|.|++ |..+... .+.+|.+-+...+-.|.|+|.+++
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~--------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEV--------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Ccccccc--------cccEEeccCcccCCCcceEecCcc
Confidence 35689999965 24699999 5544311 156888889999999999998876
No 392
>KOG0613|consensus
Probab=96.71 E-value=0.0052 Score=68.77 Aligned_cols=202 Identities=15% Similarity=0.093 Sum_probs=122.4
Q ss_pred cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe----------------cCeE---EecCceeEeeCCCeEEEEE
Q psy11701 87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA----------------APYF---TVEPEFINAAEEETVTFEC 147 (745)
Q Consensus 87 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~----------------~p~~---~~~~~~~~v~~G~~~~l~C 147 (745)
.++.|.+....+.+.|+|...+..+..... +...+.. +|.. ...........+..+++.|
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~-v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~ 356 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFK-VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT 356 (1205)
T ss_pred ccccccccCCccccceeeecccCCccccee-eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence 367777778888889999887766554422 2211111 1111 1112334456778899999
Q ss_pred EEeecCCC-eEEEEeCCEeccCCCC---CCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecC----C
Q psy11701 148 KASGLPEP-EIHWVHNGKPISQAPP---NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA----P 219 (745)
Q Consensus 148 ~~~~~p~~-~v~W~~~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~----p 219 (745)
...+...+ .+.|++++.....+.. ..........+.|..+...+.+.|.|.|.|..|.........+.... +
T Consensus 357 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~ 436 (1205)
T KOG0613|consen 357 ALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQP 436 (1205)
T ss_pred cccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCC
Confidence 99988777 4999998766553331 12233345688899999999999999999998876554433333211 2
Q ss_pred eeeeCCCceEEecC--ceEEEEEEEeecCCC--eEEEeeCCEEccCceEEEeec--CcEEEcccCCCCCEEEEEEE
Q psy11701 220 EITEAPKDEYTVDG--KTVVLTCRVFGAPKP--EVNWIHNQKELTGGRYTILET--GDLKITDVAFADSGEYTCFA 289 (745)
Q Consensus 220 ~~~~~~~~~~v~~g--~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~ 289 (745)
.............+ +.+.+.|...+.+.+ .++|++++.........+..+ .+|.+.-....+.+.|.-..
T Consensus 437 ~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~ 512 (1205)
T KOG0613|consen 437 PKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRAL 512 (1205)
T ss_pred ccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhh
Confidence 22222333333444 788999998777644 456666655444332222222 24666666677787774433
No 393
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.65 E-value=0.004 Score=47.57 Aligned_cols=58 Identities=36% Similarity=0.563 Sum_probs=36.8
Q ss_pred eEEEEEEEeecCC--CeEEEEeCCE-----ecc----------CCCCCCceee------cCceEEEccCCCCCCEEEEEE
Q psy11701 142 TVTFECKASGLPE--PEIHWVHNGK-----PIS----------QAPPNPRRKV------GPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 142 ~~~l~C~~~~~p~--~~v~W~~~g~-----~~~----------~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
+++|.|....... ..+.|++... .+. ......++.. ....|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999876443 3789998431 111 0011222221 224799999999999999996
Q ss_pred E
Q psy11701 199 A 199 (745)
Q Consensus 199 ~ 199 (745)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 394
>KOG3632|consensus
Probab=96.61 E-value=0.023 Score=61.25 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=102.7
Q ss_pred CCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccc-cCcceeEEEEEec
Q psy11701 406 SNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFV-PASKNFARVLAFN 484 (745)
Q Consensus 406 ~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~-~~~~Y~~~V~a~n 484 (745)
....+.. ....++.|.|+++.....-++...|.+..-..-. ..+. .+......+..|. ....|.+.|.+..
T Consensus 582 r~~~~vk-qla~sv~vawepps~pP~~~~~~~~~~~v~~elr-----q~l~--~gs~tka~~E~ld~~a~s~~isvq~lt 653 (1335)
T KOG3632|consen 582 RTGAAVK-QLAGSVHVAWEPPSSPPFTAPARMIGATVLMELR-----QTLY--AGSLTKAMQESLDNSAHSGYISVQRLT 653 (1335)
T ss_pred cchhhhh-hhccceeeeccCCCCCCccccceeeeeecchhhh-----hhcc--cccchHHHHhhccccCCceeeehhhhh
Confidence 3444444 6778999999997766666677777663211100 0011 2333344445554 3446888888999
Q ss_pred CCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCc
Q psy11701 485 GAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT 564 (745)
Q Consensus 485 ~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (745)
..|..+....+.. +.-++|..|.++++..++.++..++|-+-.. + --.+.|....... +.....
T Consensus 654 SrGsqd~lrc~Ll-vgg~a~vvpsqlrv~n~tqtSa~itwvp~ns-n----~~Hviyln~eE~~----------ps~a~~ 717 (1335)
T KOG3632|consen 654 SRGSQDQLRCILL-VGGAAPVVPSQLRVWNATQTSAMITWVPFNS-N----FLHVIYLNAEEPR----------PSVAEM 717 (1335)
T ss_pred ccCCCCcceeeEe-ccccccccchhhhhhhhhchhhheeeeecCC-C----cceeeecCCccCC----------Cchhhh
Confidence 9998887765443 3446778899999999999999999986432 1 1133443322221 114456
Q ss_pred ceeeecCCCCCccEEEEEEEEec
Q psy11701 565 TSAKLAGLEPSTKYRIHLAGYTK 587 (745)
Q Consensus 565 ~~~~l~~L~p~t~Y~~~V~a~n~ 587 (745)
..+++.+|.|++.|.++|-|.-.
T Consensus 718 y~ytf~~lrpgt~y~a~vea~~p 740 (1335)
T KOG3632|consen 718 YNYTFMRLRPGTDYWASVEAALP 740 (1335)
T ss_pred hHHHHhccCCCCccceecccccC
Confidence 77899999999999999988754
No 395
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.59 E-value=0.0097 Score=46.63 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=39.7
Q ss_pred CCeEEEEEEE-eecCCCeEEEEeCCEeccC--C-CCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 140 EETVTFECKA-SGLPEPEIHWVHNGKPISQ--A-PPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 140 G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~--~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
.....+.|.+ .|.|.+.|+|+++...... . ..........+.|.+.....+|.-.|+|++.+..-
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 3456789999 5699999999997111100 0 00001111224677766666666789999998753
No 396
>PHA02982 hypothetical protein; Provisional
Probab=96.47 E-value=0.036 Score=48.44 Aligned_cols=117 Identities=17% Similarity=0.367 Sum_probs=69.1
Q ss_pred ceeEecCCcEEEEEEE-eecCCCeeEEEEC-CEecCC---------------C---C--CeEeccCCcEEEEccCCCCCC
Q psy11701 42 KEVALRNKKVELFCIF-GGTPLPQTIWSKD-GVPINP---------------S---D--RISQGNYGKSLIIKHVEFSDQ 99 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~-~~~i~~---------------~---~--~~~~~~~~~~L~i~~~~~~d~ 99 (745)
++....|++|.|.|.. .+.......|+++ +..|.. + + +.+.+...++|+|+++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 4456679999999996 2233447889984 333331 0 0 133445567999999999999
Q ss_pred EEEEEEEEeCCeeeEEEEEEEEEEe-cCeEEecCceeEeeCC-CeEEEEEEEeecCCCeEEEEeCCEe
Q psy11701 100 GSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEE-ETVTFECKASGLPEPEIHWVHNGKP 165 (745)
Q Consensus 100 G~Y~C~~~~~~g~~~~~~~~l~V~~-~p~~~~~~~~~~v~~G-~~~~l~C~~~~~p~~~v~W~~~g~~ 165 (745)
|-|+|++....+....-.-=|.|.. ...+ .+.++ ..-.+.|-+-.....-..|.-+|..
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 9999999876543332111222211 1111 11223 3345789885433332389988764
No 397
>PHA02633 hypothetical protein; Provisional
Probab=96.45 E-value=0.011 Score=40.40 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=33.7
Q ss_pred cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216 (745)
Q Consensus 178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~ 216 (745)
....|.|.++..+|+|.|.|..+|..-....++.+.|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 345799999999999999999999888888888888864
No 398
>PHA02633 hypothetical protein; Provisional
Probab=96.43 E-value=0.016 Score=39.63 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=31.2
Q ss_pred cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEec
Q psy11701 84 NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125 (745)
Q Consensus 84 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~ 125 (745)
..+..|.|-++..+|+|.|.|.+.+..--.. .++.|+|...
T Consensus 15 ~~~~nLwilpa~~sDSGiYiC~~rn~t~c~~-~si~l~V~~~ 55 (63)
T PHA02633 15 DNCNNMLILNPTQSDSGIYMCITKNETYSDM-MKFDLCICLR 55 (63)
T ss_pred cccccEEEeccccccCcEEEEEEcCCCeeEE-EEEEEEEeec
Confidence 3566899999999999999999987644433 4467777653
No 399
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.42 E-value=0.0055 Score=50.10 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=45.1
Q ss_pred eCCCeEEEEEEEee-----cCCCeEEEEeCCEeccCCCCCCce--------------eecCceEEEccCCCCCCEEEEEE
Q psy11701 138 AEEETVTFECKASG-----LPEPEIHWVHNGKPISQAPPNPRR--------------KVGPNRITIENLRKSDTGNYGCN 198 (745)
Q Consensus 138 ~~G~~~~l~C~~~~-----~p~~~v~W~~~g~~~~~~~~~~~~--------------~~~~~~L~i~~v~~~d~G~Y~C~ 198 (745)
.=++++.|+|.+.. .+...+.|.++|+.+-..+..... ..++.+|.+.....- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 34799999999965 223479999998876422111111 123446877764433 8999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy11701 199 ATNSLGYVYKDVYVNV 214 (745)
Q Consensus 199 ~~~~~g~~~~~~~l~v 214 (745)
+.......+..+.|..
T Consensus 104 Vt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 104 VTELSREGETTIELKY 119 (130)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEecCCCceEEEEEEE
Confidence 9987776666655554
No 400
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.40 E-value=0.015 Score=44.82 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=42.3
Q ss_pred eeCCCeEEEEEEEee-cCC--CeEEEEeCCEeccCCCCCCce-----eecCceEEEccCCCCCCE-EEEEEEEe
Q psy11701 137 AAEEETVTFECKASG-LPE--PEIHWVHNGKPISQAPPNPRR-----KVGPNRITIENLRKSDTG-NYGCNATN 201 (745)
Q Consensus 137 v~~G~~~~l~C~~~~-~p~--~~v~W~~~g~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G-~Y~C~~~~ 201 (745)
+.+|..+++.|.+.+ .|. ..+.|+++...+......... ......++|... ++|.| .|+|+|.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 578999999999975 554 589999987776643322110 112245666654 66666 79999863
No 401
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.39 E-value=0.013 Score=45.79 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=36.5
Q ss_pred CcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCC-----cEEEEccCCCCCCE-EEEEEEEeCC
Q psy11701 49 KKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYG-----KSLIIKHVEFSDQG-SYTCEVSNGV 110 (745)
Q Consensus 49 ~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~-----~~L~i~~~~~~d~G-~Y~C~~~~~~ 110 (745)
..+.+.|.+ .|.|.+.|.|+++..... .........+ +.|.+ ..+.+|.| .|+|++.+..
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~-~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSL-VPTPEANGKEVTCKVEHET 82 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEE-ecCHHHCCCEEEEEEeCcc
Confidence 567899988 577999999999722111 0111111222 24555 34455555 8999998753
No 402
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.35 E-value=0.023 Score=44.51 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=41.4
Q ss_pred CCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCC-----cEEEEccCCCCCCE-EEEEEEEeCC-eeeEEEEEE
Q psy11701 48 NKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYG-----KSLIIKHVEFSDQG-SYTCEVSNGV-GEAKSYSID 119 (745)
Q Consensus 48 G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~-----~~L~i~~~~~~d~G-~Y~C~~~~~~-g~~~~~~~~ 119 (745)
.....+.|.+ .|+|.++|+|+++..... .........+ +.|.+ ..+.+|.| .|+|++.+.. .+.....+.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~-~p~~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRL-VPSREANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEE-ecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3567889999 788999999999711110 0011111222 24555 44555666 8999998753 233334444
Q ss_pred EE
Q psy11701 120 LS 121 (745)
Q Consensus 120 l~ 121 (745)
|.
T Consensus 93 L~ 94 (95)
T cd05719 93 LN 94 (95)
T ss_pred ee
Confidence 43
No 403
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.34 E-value=0.016 Score=45.05 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=44.8
Q ss_pred eeEeeCCCeEEE-EEEE-eecCCCeEEEEeCCEeccCC--C-CCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701 134 FINAAEEETVTF-ECKA-SGLPEPEIHWVHNGKPISQA--P-PNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203 (745)
Q Consensus 134 ~~~v~~G~~~~l-~C~~-~~~p~~~v~W~~~g~~~~~~--~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 203 (745)
...+.+|+.+.+ .|.+ .|.|++.|.|+.+....... . .......-.+.|.+.....+|.-.++|++.+..
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 345678899988 9998 56899999999863322210 0 000111122466676666667778999998764
No 404
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.16 E-value=0.014 Score=45.12 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=39.0
Q ss_pred CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123 (745)
Q Consensus 78 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~ 123 (745)
+++.+...+-+|.|+.++..|+|.|..++++..|......+.|.|.
T Consensus 62 ~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 62 NRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp HHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 5677878888999999999999999999999999998888888774
No 405
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.13 E-value=0.021 Score=46.18 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=55.2
Q ss_pred CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC--CCccEE
Q psy11701 502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE--PSTKYR 579 (745)
Q Consensus 502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--p~t~Y~ 579 (745)
+...+|.++++.+..- ...|.|+++... ..-..|.|+|+......|..... .. +.......|++.. +...|.
T Consensus 20 ~~lp~P~nv~~~s~nf-~~iL~W~~~~~~-~~~~~ytVq~~~~~~~~W~~v~~-C~---~i~~~~Cdlt~~~~~~~~~Y~ 93 (107)
T PF01108_consen 20 ASLPAPQNVTVDSVNF-KHILRWDPGPGS-PPNVTYTVQYKKYGSSSWKDVPG-CQ---NITETSCDLTDETSDPSESYY 93 (107)
T ss_dssp SSGSSCEEEEEEEETT-EEEEEEEESTTS-SSTEEEEEEEEESSTSCEEEECC-EE---EESSSEEECTTCCTTTTSEEE
T ss_pred ccCCCCCeeEEEEECC-ceEEEeCCCCCC-CCCeEEEEEEEecCCcceeeccc-ee---cccccceeCcchhhcCcCCEE
Confidence 3445788999988654 477999995532 25578999999555544443310 11 2344677777644 788999
Q ss_pred EEEEEEecCCC
Q psy11701 580 IHLAGYTKAGD 590 (745)
Q Consensus 580 ~~V~a~n~~G~ 590 (745)
+||+|......
T Consensus 94 ~rV~A~~~~~~ 104 (107)
T PF01108_consen 94 ARVRAEVGNQT 104 (107)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEeCCcc
Confidence 99999875543
No 406
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.11 E-value=0.014 Score=47.35 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=49.9
Q ss_pred ceeEEEcCCceEEEEeeCCCC----CCCc--------eeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCc
Q psy11701 509 SLEAIPLGSSAFYLKWVKPEQ----PNGV--------LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576 (745)
Q Consensus 509 ~~~~~~~~~~~i~l~W~~p~~----~~g~--------i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t 576 (745)
.+.+ .....+|.|.+.+|.. .+.. -..|.|.|...++... ... . ......+.|.+|.|++
T Consensus 7 ~v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~--~~~----~-~~~~~~~~l~~L~p~t 78 (106)
T PF09294_consen 7 SVNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEK--KKE----I-ETKNSSVTLSDLKPGT 78 (106)
T ss_dssp EEEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCE--EEE----E-ESSSEEEEEES--TTS
T ss_pred EEEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccc--eEE----E-eecCCEEEEeCCCCCC
Confidence 4776 4578899999998861 1111 2469999888766511 110 1 3345677999999999
Q ss_pred cEEEEEEEEec--CCCCCCcce
Q psy11701 577 KYRIHLAGYTK--AGDGAESKY 596 (745)
Q Consensus 577 ~Y~~~V~a~n~--~G~g~~S~~ 596 (745)
.|.|+|.|... ...|.+|.+
T Consensus 79 ~YCv~V~~~~~~~~~~s~~S~~ 100 (106)
T PF09294_consen 79 NYCVSVQAFSPSQNKNSQPSEP 100 (106)
T ss_dssp EEEEEEEEEECSSTEEEEEBSE
T ss_pred CEEEEEEEEeccCCCcCCCCCC
Confidence 99999999332 234555544
No 407
>KOG4367|consensus
Probab=96.05 E-value=0.0078 Score=58.14 Aligned_cols=82 Identities=28% Similarity=0.302 Sum_probs=63.2
Q ss_pred ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCc
Q psy11701 414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493 (745)
Q Consensus 414 ~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~ 493 (745)
....++++.|+.|+. ...+..||.++.-..+ ...++++. .+..+-+++.+|..++.|..||.|+|..|.+++|.
T Consensus 450 t~nns~t~~wkqp~~--~~~~~dg~~leld~g~--~g~frevy--~g~etmctvdglhfns~y~arvka~n~tg~s~ys~ 523 (699)
T KOG4367|consen 450 THNNSATLSWKQPPL--STVPADGYILELDDGN--GGQFREVY--VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK 523 (699)
T ss_pred ccCCceEEEeecCCC--CCCCCcceEEEeecCC--CCceeEEE--ecCceeEEecceecchhHHHHHHHhhccCCCcccc
Confidence 456899999996443 3456889998774432 23444444 46788899999999999999999999999999999
Q ss_pred ceEEeCCC
Q psy11701 494 IISFVTPE 501 (745)
Q Consensus 494 ~~~~~t~~ 501 (745)
.+...|.+
T Consensus 524 tl~lqts~ 531 (699)
T KOG4367|consen 524 TLVLQTSE 531 (699)
T ss_pred eeEeeecc
Confidence 88776643
No 408
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.03 E-value=0.02 Score=44.66 Aligned_cols=64 Identities=9% Similarity=0.170 Sum_probs=39.7
Q ss_pred CeEEEEEEEe-ecCCCeEEEEeCCEeccCCC---CCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701 141 ETVTFECKAS-GLPEPEIHWVHNGKPISQAP---PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204 (745)
Q Consensus 141 ~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g 204 (745)
..+.++|.+. +.|.+.|+|+++........ .........+.|.+..-..+|...|+|++.+..-
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 4578999985 68999999999722111000 0001111234677766666677789999998754
No 409
>KOG4152|consensus
Probab=95.98 E-value=0.019 Score=57.28 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=43.9
Q ss_pred eecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCC---------cceeEEEeecCccccCCCcceEE
Q psy11701 568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTP---------NNLVISWTAMPEIEHNAPHFKYR 638 (745)
Q Consensus 568 ~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p---------~~~~v~W~~~~~~~~~g~i~~y~ 638 (745)
.-..|.+|..|+|+|.|.|..|.|++|.+...++... ..|+.| -.+.+.|+++..- +.|.|.-|.
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~p-----G~P~apS~~ri~k~~eGi~l~weppt~p-~sg~Iieys 723 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAP-----GKPTAPSGARIKKTIEGISLVWEPPTKP-GSGTIIEYS 723 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhheeeeeccC-----CCCCCcccccccccccceeecccCCCCC-CCcceEEee
Confidence 3457999999999999999999999998876554332 223333 3457788755432 234444444
Q ss_pred E
Q psy11701 639 I 639 (745)
Q Consensus 639 i 639 (745)
.
T Consensus 724 ~ 724 (830)
T KOG4152|consen 724 P 724 (830)
T ss_pred h
Confidence 3
No 410
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.95 E-value=0.055 Score=43.30 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=44.8
Q ss_pred ecCceeEeeCCCeEEEEEEEeecC--C-CeEEEEeCCE-ec---c--------CCCCCCceee------cCceEEEccCC
Q psy11701 130 VEPEFINAAEEETVTFECKASGLP--E-PEIHWVHNGK-PI---S--------QAPPNPRRKV------GPNRITIENLR 188 (745)
Q Consensus 130 ~~~~~~~v~~G~~~~l~C~~~~~p--~-~~v~W~~~g~-~~---~--------~~~~~~~~~~------~~~~L~i~~v~ 188 (745)
.++....+..|+.++|.|.++|.. . ..+.|+|... .+ . ......+... ..-.|.|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 345556788999999999997743 3 4788988321 11 0 0001111111 11369999999
Q ss_pred CCCCEEEEEEE
Q psy11701 189 KSDTGNYGCNA 199 (745)
Q Consensus 189 ~~d~G~Y~C~~ 199 (745)
.+|++.|.|..
T Consensus 83 a~DTa~Y~Ca~ 93 (115)
T cd05721 83 ANQTDIYFCKI 93 (115)
T ss_pred HHHCeEEEEEe
Confidence 99999999965
No 411
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.69 E-value=0.065 Score=41.15 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=48.3
Q ss_pred eeccceeEecCCcEEEEEEEeec-----CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEE
Q psy11701 38 VTRKKEVALRNKKVELFCIFGGT-----PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS 107 (745)
Q Consensus 38 ~~~~~~~v~~G~~~~l~C~~~g~-----p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (745)
+.|+...+..|++|+..|..... ....+.|..|++.|+......+....+++++.+......-.|.|...
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 45666779999999999999422 45589999999988755555555555678887777666667777653
No 412
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=95.64 E-value=0.048 Score=43.28 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCc-----ceeeecCCCCCc
Q psy11701 502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT-----TSAKLAGLEPST 576 (745)
Q Consensus 502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~L~p~t 576 (745)
.+|+.|.++...+.....++-.|++....+.+- .|.+.|...+ ..+....... ....+. ..|.-.+..-.+
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~-~y~L~Y~~~~-~~~~eCp~~~--~~~~ns~~~~~C~F~~~~t~lf~ 81 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGSEGNLPT-NYTLFYKKEG-EEWKECPDYS--TSGPNSTVRHICYFPKSDTSLFV 81 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEESSSTSTC-EEEEEEEETT-SEEEEESESS--TTETTEEEEEEEEE-CCGCSSSS
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCCCCCCCC-cEEEEEEeCC-CCCccCCCeE--ecCCCCceeEEEEcCCCCeEEEE
Confidence 357888999999999999999999988765443 3999999876 3222222111 112232 445555888999
Q ss_pred cEEEEEEEEecCCC
Q psy11701 577 KYRIHLAGYTKAGD 590 (745)
Q Consensus 577 ~Y~~~V~a~n~~G~ 590 (745)
.|.|+|.|.|..|.
T Consensus 82 ~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 82 PYCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EEEEEEEeccCCCc
Confidence 99999999998774
No 413
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.35 E-value=0.025 Score=46.30 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=43.5
Q ss_pred eEecCCcEEEEEEEeec-----CCCeeEEEECCEecCC---C-CCeE-----------eccCCcEEEEccCCCCCCEEEE
Q psy11701 44 VALRNKKVELFCIFGGT-----PLPQTIWSKDGVPINP---S-DRIS-----------QGNYGKSLIIKHVEFSDQGSYT 103 (745)
Q Consensus 44 ~v~~G~~~~l~C~~~g~-----p~~~v~W~~~~~~i~~---~-~~~~-----------~~~~~~~L~i~~~~~~d~G~Y~ 103 (745)
...-.++|.|.|.+... +..-|.|.++|+.|-. . .+.. +..++.+|.+...+.- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 44457999999999642 2235899999887631 1 1110 1122346888775444 89999
Q ss_pred EEEEeCCeeeEEEEEEEEE
Q psy11701 104 CEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 104 C~~~~~~g~~~~~~~~l~V 122 (745)
|.+.....+.. ..+.|..
T Consensus 102 CeVt~~~~ege-~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREGE-TTIELKY 119 (130)
T ss_dssp EEEEETTEEEE-EEEEEEE
T ss_pred EEEEecCCCce-EEEEEEE
Confidence 99988766555 4466655
No 414
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.12 E-value=0.034 Score=50.96 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=39.7
Q ss_pred CCCeeEEEE-CCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701 61 PLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 61 p~~~v~W~~-~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
..|.+.|.. +|..|....++.+...| .|.+.+...+++|.|+|.....
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG-~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG-KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc-eEEeeccccccCCceEEEEEEE
Confidence 467899997 56677766778877766 4999999999999999999764
No 415
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=94.78 E-value=0.2 Score=40.46 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=52.0
Q ss_pred eccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEE--EEccCceeEEEecccc--cCc
Q psy11701 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL--IVNKGESTTTEVDKFV--PAS 474 (745)
Q Consensus 399 ~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~L~--~~~ 474 (745)
.....+|.++++.. ......|.|++++... .-..|.++|..... ..+..+ .. ......+.++... ...
T Consensus 19 ~~~lp~P~nv~~~s--~nf~~iL~W~~~~~~~---~~~~ytVq~~~~~~--~~W~~v~~C~-~i~~~~Cdlt~~~~~~~~ 90 (107)
T PF01108_consen 19 SASLPAPQNVTVDS--VNFKHILRWDPGPGSP---PNVTYTVQYKKYGS--SSWKDVPGCQ-NITETSCDLTDETSDPSE 90 (107)
T ss_dssp -SSGSSCEEEEEEE--ETTEEEEEEEESTTSS---STEEEEEEEEESST--SCEEEECCEE-EESSSEEECTTCCTTTTS
T ss_pred cccCCCCCeeEEEE--ECCceEEEeCCCCCCC---CCeEEEEEEEecCC--cceeecccee-cccccceeCcchhhcCcC
Confidence 35567889999876 3556789999954332 34679999983333 344443 22 2344666666643 677
Q ss_pred ceeEEEEEecCC
Q psy11701 475 KNFARVLAFNGA 486 (745)
Q Consensus 475 ~Y~~~V~a~n~~ 486 (745)
.|.+||+|.-..
T Consensus 91 ~Y~~rV~A~~~~ 102 (107)
T PF01108_consen 91 SYYARVRAEVGN 102 (107)
T ss_dssp EEEEEEEEEETT
T ss_pred CEEEEEEEEeCC
Confidence 899999998543
No 416
>KOG3632|consensus
Probab=94.68 E-value=0.21 Score=54.35 Aligned_cols=183 Identities=15% Similarity=0.207 Sum_probs=114.7
Q ss_pred EEEEEEEe-ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEeccc
Q psy11701 392 AQATLTVQ-VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKF 470 (745)
Q Consensus 392 ~~~~l~v~-~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L 470 (745)
....|.+. ..+..|.++++.+ .+..+..++|-+.+.... ..| |-..... . ........+++.+|
T Consensus 661 lrc~Llvgg~a~vvpsqlrv~n-~tqtSa~itwvp~nsn~~------Hvi-yln~eE~--~-----ps~a~~y~ytf~~l 725 (1335)
T KOG3632|consen 661 LRCILLVGGAAPVVPSQLRVWN-ATQTSAMITWVPFNSNFL------HVI-YLNAEEP--R-----PSVAEMYNYTFMRL 725 (1335)
T ss_pred ceeeEeccccccccchhhhhhh-hhchhhheeeeecCCCcc------eee-ecCCccC--C-----CchhhhhHHHHhcc
Confidence 33444432 4467889999988 899999999998543321 122 3222111 1 11335566788999
Q ss_pred ccCcceeEEEEEecC-CCC--------CCCCcceEEeCCC-CCCCCCCceeEEEc-CCceEEEEeeCCC-C-----CCCc
Q psy11701 471 VPASKNFARVLAFNG-AYN--------GPPSEIISFVTPE-GVPGTVQSLEAIPL-GSSAFYLKWVKPE-Q-----PNGV 533 (745)
Q Consensus 471 ~~~~~Y~~~V~a~n~-~G~--------g~~S~~~~~~t~~-~~P~~p~~~~~~~~-~~~~i~l~W~~p~-~-----~~g~ 533 (745)
.|++.|.++|.+.-. .+. +.....+.++|.. ++|.+|.++.+..- +...+.++|.||. + ++-.
T Consensus 726 rpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~ 805 (1335)
T KOG3632|consen 726 RPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVA 805 (1335)
T ss_pred CCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCcee
Confidence 999999999998754 211 2223456677654 56678888887654 5677899999985 2 2337
Q ss_pred eeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC-CccEEEEEEEEecCCCCCCccee
Q psy11701 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP-STKYRIHLAGYTKAGDGAESKYL 597 (745)
Q Consensus 534 i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p-~t~Y~~~V~a~n~~G~g~~S~~~ 597 (745)
++||.|+-... ...... ......+...+..|.- ...=.|.|+....-|.+.-|...
T Consensus 806 vtgYavyadgq---kv~Eva-----fptagst~VelsQlq~~l~~~~V~vRtms~~gesvdsipA 862 (1335)
T KOG3632|consen 806 VTGYAVYADGQ---KVEEVA-----FPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDSIPA 862 (1335)
T ss_pred eeeeeeeeCCc---eeeeee-----cccCCceEEEeeeehhhheecceeEEecccCccccccccc
Confidence 99999987522 222211 1122334555666655 56677888888888877765444
No 417
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=94.66 E-value=0.74 Score=44.20 Aligned_cols=189 Identities=16% Similarity=-0.008 Sum_probs=105.6
Q ss_pred eeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEE
Q psy11701 435 FRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIP 514 (745)
Q Consensus 435 i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~ 514 (745)
+.+|.+ |+...+.... .--.+.......+....|.+...|.+..-..+..-.+..+......+. .-.+.+.....-
T Consensus 5 ~~~~~~-~~t~~~~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~i~~~~~~~~~~ 80 (343)
T COG3401 5 IDGFVL-YRTKKDLKLK-RIGTIKNKYQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTS--FIERVRSVFASL 80 (343)
T ss_pred ceeEEE-EEEcccchhh-hhhccccchhhhhhhccccccCcceeeecccccceeeecCcceEEEee--eccccccccchh
Confidence 556766 4444332211 111123445667777888888888877666655434444555544443 222222333333
Q ss_pred cCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCc
Q psy11701 515 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594 (745)
Q Consensus 515 ~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S 594 (745)
.-+..+.+-|.+-.+ -+...|.|+....+.- ..+.... . +.-.-.+.-.+|.++..|...|.|.+..+.=+.|
T Consensus 81 ~~~~~~~~~w~~~~d--~~~~~Y~i~~~~gD~~-f~r~~~~---~-n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs 153 (343)
T COG3401 81 ERPKSVKVFWSPHPD--VSVGKYIIQRQNGDGK-FLRTGLV---K-NRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS 153 (343)
T ss_pred cCcceeeecccccCC--CCCCeEEEEEecCchh-hhhhhHH---H-hccchhheecccccccceeeeEEeecccccceee
Confidence 355669999998654 2455799988765433 2221110 0 2223445666999999999999999887665554
Q ss_pred -ceeeecccCCCCCC---CCCCCCCcceeEEEeecCccccCCCcceEEEE
Q psy11701 595 -KYLFYVPFKNPDNV---EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIF 640 (745)
Q Consensus 595 -~~~~~~~~~~~~~~---~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~ 640 (745)
..+..++...|... .+...-++++.++|+-++.+ .+|+|+
T Consensus 154 f~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~------~yy~IY 197 (343)
T COG3401 154 FTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE------DYYRIY 197 (343)
T ss_pred eeeeecccccCCceeeeeeeecCCCCcceeeccCcccc------ceEEEe
Confidence 22222222222222 12224568889999866543 378886
No 418
>KOG4228|consensus
Probab=94.22 E-value=0.22 Score=55.66 Aligned_cols=104 Identities=19% Similarity=0.137 Sum_probs=71.3
Q ss_pred EEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccc
Q psy11701 480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559 (745)
Q Consensus 480 V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~ 559 (745)
+.+.+..|.++++..+.+.+....|..|. ...+.+.++++|.++.. ..+..|.+.+...+........
T Consensus 144 ~~~~~~~~~~~~~t~i~i~~~~~~p~~~~----~~~~~~~it~~w~~~~~--~~~~~ykl~~~~~d~~~~~~v~------ 211 (1087)
T KOG4228|consen 144 PLAIASPGLGPPSTYIQITTNANSPIQPG----EEEEYTTITGSWSPPHA--VSLDTYKLLHLDPDTGYEISVT------ 211 (1087)
T ss_pred ccccCCcccCCCCceEEEeccCCCCCCCC----cceEEEEEEecCCCCCc--ccchhhhhhhcCCcccceeeee------
Confidence 77888888888877788888888887776 44577899999998743 4677788877665333222111
Q ss_pred cCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcce
Q psy11701 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY 596 (745)
Q Consensus 560 ~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~ 596 (745)
.....+....+|.|-..|.++..+....+.+.+...
T Consensus 212 -~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~ 247 (1087)
T KOG4228|consen 212 -LTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAE 247 (1087)
T ss_pred -ccCCCCCcccCCCCcccccccccCccccccCCCCcc
Confidence 223344455677888888888888877766666443
No 419
>PHA03042 CD47-like protein; Provisional
Probab=94.08 E-value=0.18 Score=46.49 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=45.1
Q ss_pred ecCCcEEEEEEEeec-----CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701 46 LRNKKVELFCIFGGT-----PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL 120 (745)
Q Consensus 46 ~~G~~~~l~C~~~g~-----p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l 120 (745)
.-.+++.+.|..+.. ...-+.|..|++.+-..+.. ..++|.+ +...+-.|+|+|+|.+...+.. ..++|
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk-~~IeL 102 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----NTSSLKF-NFSKNLSGNYTCEAINKFNKIK-NTIEL 102 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----cceEEEE-eccccCCCceeEEEeecccCcc-EEEEE
Confidence 347899999999643 12358999999887532222 2246777 4445568999999987554443 33444
Q ss_pred E
Q psy11701 121 S 121 (745)
Q Consensus 121 ~ 121 (745)
.
T Consensus 103 k 103 (286)
T PHA03042 103 Q 103 (286)
T ss_pred E
Confidence 3
No 420
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=93.85 E-value=0.13 Score=41.60 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=41.9
Q ss_pred CcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEec--CcccCCCCcceEEeCC
Q psy11701 670 TFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN--GAYNGPPSEIISFVTP 739 (745)
Q Consensus 670 ~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~--~~G~g~~s~~~~~~t~ 739 (745)
+...|.|. +|..+.. ............+.|.+|.|++.|=|+|+|.. ....|.+|+++-.+|+
T Consensus 42 ~~~~Y~v~---~~~~~~~----~~~~~~~~~~~~~~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t~ 106 (106)
T PF09294_consen 42 PSLSYNVS---YWKNGSN----EKKKEIETKNSSVTLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITTT 106 (106)
T ss_dssp GG-EEEEE---EEETTTS----CEEEEEESSSEEEEEES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE--
T ss_pred CCeEEEEE---EEeCCCc----cceEEEeecCCEEEEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeCc
Confidence 34567775 3666665 22233356777889999999999999999933 4456999998888774
No 421
>PHA03042 CD47-like protein; Provisional
Probab=93.71 E-value=0.28 Score=45.26 Aligned_cols=63 Identities=24% Similarity=0.449 Sum_probs=42.6
Q ss_pred CCCeEEEEEEEeec-----CCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701 139 EEETVTFECKASGL-----PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207 (745)
Q Consensus 139 ~G~~~~l~C~~~~~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~ 207 (745)
=.+++.+.|.++.. ....+.|.++++.+-..+.. ...+|.+. -..+-.|+|+|+|.+...+..
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk 97 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFN-FSKNLSGNYTCEAINKFNKIK 97 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEe-ccccCCCceeEEEeecccCcc
Confidence 37899999998752 34579999999887633222 11456553 345568999999986554333
No 422
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=93.64 E-value=0.44 Score=37.90 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=54.0
Q ss_pred ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEE-ccCceeE-----EEec--ccc
Q psy11701 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV-NKGESTT-----TEVD--KFV 471 (745)
Q Consensus 400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~-~~~~~~~-----~~i~--~L~ 471 (745)
.||..|.++.+.. .....++..|+++...... ..|.+.|+..+ ..+..... ......+ +.+. +..
T Consensus 6 ~~p~~P~~~~C~S-~~~etftC~W~~g~~~~l~---~~y~L~Y~~~~---~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~ 78 (104)
T PF09067_consen 6 LPPEKPENLKCFS-REMETFTCFWEPGSEGNLP---TNYTLFYKKEG---EEWKECPDYSTSGPNSTVRHICYFPKSDTS 78 (104)
T ss_dssp HHCCCCEEEEEEB-SSSS-EEEEEEEESSSTST---CEEEEEEEETT---SEEEEESESSTTETTEEEEEEEEE-CCGCS
T ss_pred cCCCCCccCccCC-CCCCcEEEEeeCCCCCCCC---CcEEEEEEeCC---CCCccCCCeEecCCCCceeEEEEcCCCCeE
Confidence 4688899999887 7888999999997543322 33999888765 23333322 1112222 4444 667
Q ss_pred cCcceeEEEEEecCCCC
Q psy11701 472 PASKNFARVLAFNGAYN 488 (745)
Q Consensus 472 ~~~~Y~~~V~a~n~~G~ 488 (745)
-...|.++|.|.|..|.
T Consensus 79 lf~~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 79 LFVPYCIQVEATNALGS 95 (104)
T ss_dssp SSSEEEEEEEEEETTEE
T ss_pred EEEEEEEEEEeccCCCc
Confidence 78899999999998764
No 423
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=93.57 E-value=2.7 Score=45.72 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=26.5
Q ss_pred CCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593 (745)
Q Consensus 561 ~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~ 593 (745)
......|.+.+|-+ -.|.++|+|.|..|....
T Consensus 656 rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~ 687 (952)
T COG4733 656 RTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSP 687 (952)
T ss_pred cccccceeecCcCc-cceEEEEEEeeccCCCCC
Confidence 44567899999988 789999999999886544
No 424
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.39 E-value=0.53 Score=36.17 Aligned_cols=66 Identities=14% Similarity=0.386 Sum_probs=45.3
Q ss_pred CCCceEEecCceEEEEEEEeec-----CCCeEEEeeCCEEccCceEEEeecC--cEEEcccCCCCCEEEEEEE
Q psy11701 224 APKDEYTVDGKTVVLTCRVFGA-----PKPEVNWIHNQKELTGGRYTILETG--DLKITDVAFADSGEYTCFA 289 (745)
Q Consensus 224 ~~~~~~v~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~ 289 (745)
.|....+..|+++++.|..... ....|.|..++..++.+++....++ .+++.+......-.|-|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 3456677899999999998643 2346999999999999999887776 4555565554444666653
No 425
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=92.69 E-value=3.7 Score=40.38 Aligned_cols=154 Identities=19% Similarity=0.320 Sum_probs=87.4
Q ss_pred eeEecCCcEEEEEEEee--c-CCCeeEEEECCEecCC-----------------CCCeEe--------ccCCcEEEEccC
Q psy11701 43 EVALRNKKVELFCIFGG--T-PLPQTIWSKDGVPINP-----------------SDRISQ--------GNYGKSLIIKHV 94 (745)
Q Consensus 43 ~~v~~G~~~~l~C~~~g--~-p~~~v~W~~~~~~i~~-----------------~~~~~~--------~~~~~~L~i~~~ 94 (745)
..+..|.+|.|.|...- + ...+..|+.-|-++.+ .+.+.+ +-..++|+|.++
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 34555999999999842 2 3447889876655442 111222 223468999999
Q ss_pred CCCCCEEEEEEEEeCCeeeE-EEEEEEEEEecCeEEecCceeEeeCCCeE-EEEEEEeec--CCCeEEEEeCCEeccCCC
Q psy11701 95 EFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYFTVEPEFINAAEEETV-TFECKASGL--PEPEIHWVHNGKPISQAP 170 (745)
Q Consensus 95 ~~~d~G~Y~C~~~~~~g~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~~-~l~C~~~~~--p~~~v~W~~~g~~~~~~~ 170 (745)
..+.+|-|.|+|........ .+- |.|.....| ....+|+.. .+.|-+-.. .++.+.|.-+|.......
T Consensus 354 ~I~N~GCY~~~a~~g~~~~ec~~C--l~V~d~V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~ 425 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFKEECRHC--FKVADHVFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI 425 (500)
T ss_pred EEEcCCceEEEEecCcchhhhhhh--eEeccEEEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence 99999999999986532211 111 222111111 012244433 468987543 345799999887665433
Q ss_pred CCCce------ee--cCceEEEccCCCCC-CEEEEEEEEeCCc
Q psy11701 171 PNPRR------KV--GPNRITIENLRKSD-TGNYGCNATNSLG 204 (745)
Q Consensus 171 ~~~~~------~~--~~~~L~i~~v~~~d-~G~Y~C~~~~~~g 204 (745)
..... .. ....+.|.+-...| --.-.|+.....+
T Consensus 426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred cCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence 22111 11 12357777766666 3456677655443
No 426
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.64 E-value=1.2 Score=33.51 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=31.9
Q ss_pred CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701 62 LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122 (745)
Q Consensus 62 ~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V 122 (745)
.+++.|.-.+..+. ...+.+.....+.+|+|.+.|.|.+..-......+.|.|
T Consensus 26 ~~~~~l~~~~~k~~--------~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSL--------ETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEE--------EESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCcccc--------ccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 44677776554432 333456677888999999999995332222224445544
No 427
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.53 E-value=0.56 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.755 Sum_probs=17.5
Q ss_pred cEEEEEEEeec-CCC-eeEEEEC
Q psy11701 50 KVELFCIFGGT-PLP-QTIWSKD 70 (745)
Q Consensus 50 ~~~l~C~~~g~-p~~-~v~W~~~ 70 (745)
.++|+|.|.|+ |.. .+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 68999999998 433 7889999
No 428
>KOG4597|consensus
Probab=92.28 E-value=0.23 Score=49.47 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=66.0
Q ss_pred cCCCC-CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEE---CCEecCC--CCCeE--eccCCcEEEEccCCCCCCE
Q psy11701 29 NRHAP-KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK---DGVPINP--SDRIS--QGNYGKSLIIKHVEFSDQG 100 (745)
Q Consensus 29 ~~~~p-~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~---~~~~i~~--~~~~~--~~~~~~~L~i~~~~~~d~G 100 (745)
++.+| ..++.-|....+..|++..++|-+.|.+.+.|+|.+ |++.+-. ...+. .......|.|-+....|+|
T Consensus 191 pe~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~ 270 (560)
T KOG4597|consen 191 PEFEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAG 270 (560)
T ss_pred CCCCCCcccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCC
Confidence 34455 345566777789999999999999999999999975 3333221 11110 0011236999999999999
Q ss_pred EEEEEEEeCCeeeEEEEEEEEEE
Q psy11701 101 SYTCEVSNGVGEAKSYSIDLSVL 123 (745)
Q Consensus 101 ~Y~C~~~~~~g~~~~~~~~l~V~ 123 (745)
.|+|.+.+..|... ..+.+.+.
T Consensus 271 w~tCs~rcg~g~~~-rdv~c~s~ 292 (560)
T KOG4597|consen 271 WYTCSARCGAGFLR-RDVPCSSV 292 (560)
T ss_pred ceeeccccccceee-ccceeeee
Confidence 99999999887766 55666554
No 429
>KOG4597|consensus
Probab=92.18 E-value=0.22 Score=49.68 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=64.6
Q ss_pred EecCceeEeeCCCeEEEEEEEeecCCCeEEEEe---CCEeccCCCCC---CceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVH---NGKPISQAPPN---PRRKVGPNRITIENLRKSDTGNYGCNATNS 202 (745)
Q Consensus 129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~---~g~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 202 (745)
...|....+-+|++..++|-+.|.+.+.|+|.+ |++.+...... .........|.|-+....|+|.|+|.+.+.
T Consensus 200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred ccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 334455567789999999999999999999986 44443322111 011223457999999999999999999999
Q ss_pred CceEEEEEEEEEee
Q psy11701 203 LGYVYKDVYVNVLA 216 (745)
Q Consensus 203 ~g~~~~~~~l~v~~ 216 (745)
.|.....+.+.+..
T Consensus 280 ~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 280 AGFLRRDVPCSSVK 293 (560)
T ss_pred cceeeccceeeeec
Confidence 99888887777654
No 430
>PHA03286 envelope glycoprotein E; Provisional
Probab=91.94 E-value=4.1 Score=40.87 Aligned_cols=76 Identities=20% Similarity=0.160 Sum_probs=53.0
Q ss_pred CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe-----cCeEE--e------------cCceeEeeCCCeEEEE
Q psy11701 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA-----APYFT--V------------EPEFINAAEEETVTFE 146 (745)
Q Consensus 86 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~-----~p~~~--~------------~~~~~~v~~G~~~~l~ 146 (745)
++.|.|.+++..++|.|+-...++.|......+.|.|.. +|... + .+......+||++.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 467999999999999999999988777776667788842 22111 1 1233345689999887
Q ss_pred EEEe-e-cC---CCeEEEEe
Q psy11701 147 CKAS-G-LP---EPEIHWVH 161 (745)
Q Consensus 147 C~~~-~-~p---~~~v~W~~ 161 (745)
-... . .. ...+.|++
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEeecccCCCceEEEEEEE
Confidence 6664 2 12 23899986
No 431
>PHA03283 envelope glycoprotein E; Provisional
Probab=91.48 E-value=5.2 Score=41.14 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=50.9
Q ss_pred CCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCe---------EEecC------------ceeEeeCCCeE
Q psy11701 85 YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY---------FTVEP------------EFINAAEEETV 143 (745)
Q Consensus 85 ~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~---------~~~~~------------~~~~v~~G~~~ 143 (745)
..+.|.|.+++.+++|.|+-...++.+ .....+.|+|..++. ..+.| ......+|+++
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf 210 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSF 210 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCce
Confidence 346799999999999999999998766 343557778876221 11111 12234689999
Q ss_pred EEEEEEeec--C---CCeEEEEe
Q psy11701 144 TFECKASGL--P---EPEIHWVH 161 (745)
Q Consensus 144 ~l~C~~~~~--p---~~~v~W~~ 161 (745)
.+.-..... . ...+.|++
T Consensus 211 ~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 211 DLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEeEEEeeccCCCCceEEEEEEE
Confidence 987766431 1 23899986
No 432
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=91.33 E-value=11 Score=34.20 Aligned_cols=127 Identities=20% Similarity=0.348 Sum_probs=66.6
Q ss_pred eeEEEECCEecCCCC---CeEeccCC-----cEEEE-ccCCCCCCEEEEEEEEeCCeeeE----EEEEEEEEEecCeEEe
Q psy11701 64 QTIWSKDGVPINPSD---RISQGNYG-----KSLII-KHVEFSDQGSYTCEVSNGVGEAK----SYSIDLSVLAAPYFTV 130 (745)
Q Consensus 64 ~v~W~~~~~~i~~~~---~~~~~~~~-----~~L~i-~~~~~~d~G~Y~C~~~~~~g~~~----~~~~~l~V~~~p~~~~ 130 (745)
.+.|+.||.++..+. .......| ++|.+ .+...+..=..+|++.-...... +....-.|+.+|.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 688999999888432 12222233 24555 22233333478999974332222 3444456666666544
Q ss_pred cCceeEeeCCCeEEEEEEEeecC--CCeEEEEeCCEeccCCCCCCceee-----cCceEEEccCCC--CCCE--EEEEEE
Q psy11701 131 EPEFINAAEEETVTFECKASGLP--EPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRK--SDTG--NYGCNA 199 (745)
Q Consensus 131 ~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g~~~~~~~~~~~~~~-----~~~~L~i~~v~~--~d~G--~Y~C~~ 199 (745)
. +..|. .-|.+.-.| ...+.|..++...... ...... ..+...|++... ...| .|+|.+
T Consensus 88 ~-----F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~--~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l 157 (211)
T PF02124_consen 88 R-----FEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAP--AATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRL 157 (211)
T ss_pred E-----ecCCE---EEEEcceeeCCCeEEEEEECCccCCCC--CceeecCcccCCcceeEeecccCCCccCCceeEEEEE
Confidence 3 32333 347665444 2689999888754211 111111 123444544332 2334 799998
Q ss_pred E
Q psy11701 200 T 200 (745)
Q Consensus 200 ~ 200 (745)
.
T Consensus 158 ~ 158 (211)
T PF02124_consen 158 I 158 (211)
T ss_pred e
Confidence 6
No 433
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=91.21 E-value=0.55 Score=36.69 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=37.5
Q ss_pred EEEEeCCEeccCCCCCCc--eeecCceEEEccCCCCCCEEEEEEEEeCCceEE-EEEEEEEe
Q psy11701 157 IHWVHNGKPISQAPPNPR--RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVL 215 (745)
Q Consensus 157 v~W~~~g~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v~ 215 (745)
++|..+...........+ +...+..|.|..++..|+|.|.-++++..|... ..+.|.|.
T Consensus 46 ltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 46 LTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 566554444432222222 334677999999999999999999999988753 33555553
No 434
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.11 E-value=2.8 Score=31.50 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=33.1
Q ss_pred CCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEE-EeCCceEEEEEEEEE
Q psy11701 154 EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNV 214 (745)
Q Consensus 154 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~-~~~~g~~~~~~~l~v 214 (745)
.+.+.|+-.+.... .....+.....+..|+|.++|.| .+..-.......|.|
T Consensus 26 ~~~~~l~~~~~k~~---------~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSL---------ETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEE---------EESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCcccc---------ccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 34777776554332 33456677888899999999999 454444444444443
No 435
>PHA02982 hypothetical protein; Provisional
Probab=90.85 E-value=1.8 Score=38.34 Aligned_cols=122 Identities=15% Similarity=0.216 Sum_probs=68.4
Q ss_pred eeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEe-ccCCCC---------------CCc----eeecCceEEEccCCCCCC
Q psy11701 134 FINAAEEETVTFECKASG-LPEPEIHWVHNGKP-ISQAPP---------------NPR----RKVGPNRITIENLRKSDT 192 (745)
Q Consensus 134 ~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~-~~~~~~---------------~~~----~~~~~~~L~i~~v~~~d~ 192 (745)
+.....|+++.|.|.... ..-....|+++... +..... ... .....++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 344567999999999643 33347899985422 221000 011 112357899999999999
Q ss_pred EEEEEEEEeCCceEEE-EEEEEEeecCCeeeeCCCceEEecCc-eEEEEEEEeecCCCeEEEeeCCEEccCc
Q psy11701 193 GNYGCNATNSLGYVYK-DVYVNVLAHAPEITEAPKDEYTVDGK-TVVLTCRVFGAPKPEVNWIHNQKELTGG 262 (745)
Q Consensus 193 G~Y~C~~~~~~g~~~~-~~~l~v~~~~p~~~~~~~~~~v~~g~-~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 262 (745)
|=|+|.+....+..+. .-=+.|+...-.+ ...++. .-.+.|-+-+....-..|..+|....++
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVvttGg 177 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGIVTTGG 177 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeEEecCC
Confidence 9999999876544332 2112221100000 122333 3457888755433323898887644443
No 436
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=90.03 E-value=3.9 Score=31.46 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=51.6
Q ss_pred eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701 36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115 (745)
Q Consensus 36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 115 (745)
+-+.|+...|..|+++.+.|...-.-+..+-|-- .+. .........-..+.+.+++. | ..-.|.+.=. |....
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET---~L~-k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~-g~Q~~ 78 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLET---SLS-KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCS-GEQSS 78 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEES---SSE-EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEET-TEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEE---ecC-CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcC-CeEEE
Confidence 4578899999999999999998533222444521 111 00011112223677888886 4 5778988753 55666
Q ss_pred EEEEEEEEecCe
Q psy11701 116 YSIDLSVLAAPY 127 (745)
Q Consensus 116 ~~~~l~V~~~p~ 127 (745)
.+..|+|+.+|.
T Consensus 79 ~~~~ItVY~~Pe 90 (91)
T PF03921_consen 79 ASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEB--S
T ss_pred eEEeeEEeCCCC
Confidence 889999998874
No 437
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=89.59 E-value=6.6 Score=30.31 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=37.8
Q ss_pred cEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115 (745)
Q Consensus 50 ~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 115 (745)
...|.+.+.+. ...+.|+.||+.+..... ...+.+. ....|.|+-.+.+..|...+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~------~~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP------GHQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC------CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 56666676655 448999999999943221 2234332 35679999999888877663
No 438
>KOG4806|consensus
Probab=89.55 E-value=18 Score=35.10 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.6
Q ss_pred cCceeEEEecccccCcceeEEEEEecC
Q psy11701 459 KGESTTTEVDKFVPASKNFARVLAFNG 485 (745)
Q Consensus 459 ~~~~~~~~i~~L~~~~~Y~~~V~a~n~ 485 (745)
.+..+.++|.+|.|++.|.|.|-.+|.
T Consensus 166 ig~~n~~~v~~L~pdt~Y~~dvFvv~~ 192 (454)
T KOG4806|consen 166 IGNKNIFTVSDLKPDTQYYFDVFVVNI 192 (454)
T ss_pred cCCccEEEhhhcCCCceEEEEEEEEec
Confidence 456668999999999999999999875
No 439
>PHA03282 envelope glycoprotein E; Provisional
Probab=89.35 E-value=20 Score=36.42 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=26.5
Q ss_pred CcEEEEccCCCCCCEEEEEEEEeCCeee-EEEEEEEEEE
Q psy11701 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVL 123 (745)
Q Consensus 86 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~~l~V~ 123 (745)
+.+|.|.+++.+|+|.|+..+.....+. ....+.|.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 4569999999999999999985432222 2344556654
No 440
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=88.99 E-value=1.8 Score=42.28 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=17.6
Q ss_pred eEEEEEEEee-cCC-CeEEEEeC
Q psy11701 142 TVTFECKASG-LPE-PEIHWVHN 162 (745)
Q Consensus 142 ~~~l~C~~~~-~p~-~~v~W~~~ 162 (745)
.++|+|.+.| +|. ..+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999 454 48999999
No 441
>PHA03283 envelope glycoprotein E; Provisional
Probab=88.84 E-value=24 Score=36.61 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=49.7
Q ss_pred CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecC-------C-eeeeCC------------CceEEecCceEEE
Q psy11701 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA-------P-EITEAP------------KDEYTVDGKTVVL 238 (745)
Q Consensus 179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~-------p-~~~~~~------------~~~~v~~g~~~~l 238 (745)
.+.|.|.+++.+++|.|+-..++..+.....+.|.|...+ | .....| ......+|+++.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 4689999999999999999999876644445666665411 1 111111 2234557999998
Q ss_pred EEEEeecC-----CCeEEEee
Q psy11701 239 TCRVFGAP-----KPEVNWIH 254 (745)
Q Consensus 239 ~C~~~~~p-----~~~i~W~~ 254 (745)
.-...... ...+.|+.
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEEEeeccCCCCceEEEEEEE
Confidence 77765432 13688975
No 442
>PHA03282 envelope glycoprotein E; Provisional
Probab=88.79 E-value=30 Score=35.30 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=23.9
Q ss_pred ceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701 174 RRKVGPNRITIENLRKSDTGNYGCNATNS 202 (745)
Q Consensus 174 ~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 202 (745)
+....+.+|.|.+++.+|+|.|+-.+...
T Consensus 118 rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 118 RVAVVNGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred ceeEecceEEEeeccccCCceEEEEecCC
Confidence 44555788999999999999999997543
No 443
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=88.73 E-value=0.68 Score=42.82 Aligned_cols=46 Identities=30% Similarity=0.458 Sum_probs=36.9
Q ss_pred CCeEEEeeCCE-Ecc-CceEEEeecCcEEEcccCCCCCEEEEEEEEeC
Q psy11701 247 KPEVNWIHNQK-ELT-GGRYTILETGDLKITDVAFADSGEYTCFARNK 292 (745)
Q Consensus 247 ~~~i~W~~~~~-~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~ 292 (745)
.|.+.|...++ .+. +....+...|.|.+.+....++|.|+|.....
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 56899998644 444 34667788899999999999999999998754
No 444
>KOG1026|consensus
Probab=87.97 E-value=0.86 Score=49.64 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=91.9
Q ss_pred ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEE
Q psy11701 42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~ 121 (745)
...+..|..+++.|.+.+.|.+.+.|+.++............-..-...+.+ +.|.+.+..+... ..+.+.
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~-~~v~~~ 271 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSN-PSILLV 271 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcC-ceeeeE
Confidence 5568899999999999999999999998776655332221111111122211 8999988777655 345555
Q ss_pred EEecCeEEecCceeEeeCCCeEEEEEEE---eecCCCeEEEEeCCEeccCCCCCCceeecC-ceEEEccCCCCCCEEEEE
Q psy11701 122 VLAAPYFTVEPEFINAAEEETVTFECKA---SGLPEPEIHWVHNGKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGC 197 (745)
Q Consensus 122 V~~~p~~~~~~~~~~v~~G~~~~l~C~~---~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C 197 (745)
+..++......... ++ .=.|.. .+.|.+...|..++..+.-.........+. .-+....-...+.|.|+|
T Consensus 272 ~~~p~~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~ 345 (774)
T KOG1026|consen 272 VDLPKAEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTL 345 (774)
T ss_pred EecccccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCccee
Confidence 55554322221110 01 122433 356677889998887654222211111121 223233335677899999
Q ss_pred EEEeCCceEEEEEEEEEe
Q psy11701 198 NATNSLGYVYKDVYVNVL 215 (745)
Q Consensus 198 ~~~~~~g~~~~~~~l~v~ 215 (745)
.+.+..|.........+.
T Consensus 346 ~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 346 FPELPGGKNYCRNPGGFM 363 (774)
T ss_pred eecccCccccccCcCccc
Confidence 999988877665544444
No 445
>KOG1225|consensus
Probab=87.45 E-value=2.5 Score=44.33 Aligned_cols=147 Identities=15% Similarity=0.114 Sum_probs=90.4
Q ss_pred ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe-cCCCCCCCC
Q psy11701 414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF-NGAYNGPPS 492 (745)
Q Consensus 414 ~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~-n~~G~g~~S 492 (745)
-+...+.+.|... .....|...|.......... ...+ ......+.+..|+++++|..++.++ +..|..+.+
T Consensus 377 cs~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~r~-~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~ 448 (525)
T KOG1225|consen 377 CSPPSLCIAGVGR------RRVTHCAGTYCPLGESGGDL-QGRV-PGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKD 448 (525)
T ss_pred cCCCceeeccccc------cccccccccccccccCCCcc-ceee-ccceeeeeeeeecCCcceeeehhhhhhhhccCCcc
Confidence 4555566666521 11234444443333222222 4555 6788889999999999999999887 334444333
Q ss_pred cceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCC
Q psy11701 493 EIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL 572 (745)
Q Consensus 493 ~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 572 (745)
.. .++.... +..+.+.....+++.+.|..|.. ...++.+.| ......-..... + ....+.+...+|
T Consensus 449 ~~--~~~~~~~---~g~~~v~~~~~~s~e~~g~~~s~---~~~~~~~~~-~~~~~~~~~~~~----~-~~~~~~~~~~~l 514 (525)
T KOG1225|consen 449 KS--ETTVLCW---NGGLCVDGETESSLEVGGPCPSS---GTCGWEVRC-GPCGNDGGVNAE----P-PPECTSYDRTGL 514 (525)
T ss_pred cc--cceEeec---CCceeeeeeeeccccccCCCCCc---cccceEEEe-eecCcccccccC----C-CCCCCCCCccCc
Confidence 21 2222222 35778888899999999999875 345677777 222221111111 2 236788999999
Q ss_pred CCCccEEEEE
Q psy11701 573 EPSTKYRIHL 582 (745)
Q Consensus 573 ~p~t~Y~~~V 582 (745)
.|++.|.+.+
T Consensus 515 ~~c~~~~~~~ 524 (525)
T KOG1225|consen 515 GPCTEYEVSV 524 (525)
T ss_pred ccccceeccc
Confidence 9999999876
No 446
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=87.43 E-value=2.7 Score=43.61 Aligned_cols=75 Identities=20% Similarity=0.131 Sum_probs=13.7
Q ss_pred cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeE--------------------EecCceeEeeCCCeEEEE
Q psy11701 87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYF--------------------TVEPEFINAAEEETVTFE 146 (745)
Q Consensus 87 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~--------------------~~~~~~~~v~~G~~~~l~ 146 (745)
+.|.|.+++.+|+|.|+-.+.+..+......+.|.|..+..- ...+......+|+++.|.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence 569999999999999999998776666656677777642111 112233445689999888
Q ss_pred EEEee--cC-C---CeEEEEe
Q psy11701 147 CKASG--LP-E---PEIHWVH 161 (745)
Q Consensus 147 C~~~~--~p-~---~~v~W~~ 161 (745)
-.... .. . ..|.|++
T Consensus 169 v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 169 VHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccCCCCCeeEEEEEEE
Confidence 77632 22 2 3899986
No 447
>PHA03052 Hypothetical protein; Provisional
Probab=87.24 E-value=2.1 Score=30.13 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=27.4
Q ss_pred ccceeEecCCcEEEEEEE-eecC--CCeeEEEECCEec
Q psy11701 40 RKKEVALRNKKVELFCIF-GGTP--LPQTIWSKDGVPI 74 (745)
Q Consensus 40 ~~~~~v~~G~~~~l~C~~-~g~p--~~~v~W~~~~~~i 74 (745)
|+...+..|+.++|.|.+ -|.+ .+.|.|.-|+..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 366778899999999999 3333 4478899898887
No 448
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=87.06 E-value=6.5 Score=31.13 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=50.6
Q ss_pred CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCcee-EEEEccCceeEEEecccccC----cceeE
Q psy11701 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR-ELIVNKGESTTTEVDKFVPA----SKNFA 478 (745)
Q Consensus 404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~~~----~~Y~~ 478 (745)
+|+++.+.- .+...+..+|+++..... -+.|.+.||.........- ......+....+.+...... ..|.|
T Consensus 1 ~~~nlsC~~-~~~~~m~CtW~~g~~~~~---~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v 76 (99)
T PF09240_consen 1 KPQNLSCFI-YNLEYMNCTWEPGKEAPP---DTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNV 76 (99)
T ss_dssp S-EEEEEEE-ETTTEEEEEEECCTTCST---TEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEE
T ss_pred CCeeCEEEE-ECCEEEEEEECCCCCCCC---cccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEE
Confidence 356788776 778999999998654432 3579999988764322221 12221233555666665552 36888
Q ss_pred EEEEecCCCCC
Q psy11701 479 RVLAFNGAYNG 489 (745)
Q Consensus 479 ~V~a~n~~G~g 489 (745)
.|.+.+..|.-
T Consensus 77 ~V~~ss~~~~i 87 (99)
T PF09240_consen 77 CVNGSSSAGSI 87 (99)
T ss_dssp EEEEEETTEEE
T ss_pred EEEeccCCCcc
Confidence 88888876654
No 449
>PHA03281 envelope glycoprotein E; Provisional
Probab=86.03 E-value=33 Score=35.67 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=50.4
Q ss_pred CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecC--eE---EecC------------ceeEeeCCCeEEEEEE
Q psy11701 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP--YF---TVEP------------EFINAAEEETVTFECK 148 (745)
Q Consensus 86 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p--~~---~~~~------------~~~~v~~G~~~~l~C~ 148 (745)
.+.|.|.+++..++|.|+-......|...-..+.|+|...+ .+ .+.| ......+|+++.|...
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 35799999999999999998886656555345677776522 11 1111 1123468999988887
Q ss_pred Eeec--CC---CeEEEEe
Q psy11701 149 ASGL--PE---PEIHWVH 161 (745)
Q Consensus 149 ~~~~--p~---~~v~W~~ 161 (745)
.... .. ..+.|++
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 7532 22 3899986
No 450
>PHA03286 envelope glycoprotein E; Provisional
Probab=85.97 E-value=43 Score=34.10 Aligned_cols=76 Identities=21% Similarity=0.122 Sum_probs=50.1
Q ss_pred CceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEeec----CCeee--eC------------CCceEEecCceEEEE
Q psy11701 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAH----APEIT--EA------------PKDEYTVDGKTVVLT 239 (745)
Q Consensus 179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~----~p~~~--~~------------~~~~~v~~g~~~~l~ 239 (745)
.+.|.|.+++.+.+|.|+-..+|..|....+ +.|.|... +|.+. .. .......+|+++.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 4689999999999999999999887766555 45555321 22222 12 233455679999887
Q ss_pred EEEeec-----CCCeEEEee
Q psy11701 240 CRVFGA-----PKPEVNWIH 254 (745)
Q Consensus 240 C~~~~~-----p~~~i~W~~ 254 (745)
-..... -...+.|+.
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEeecccCCCceEEEEEEE
Confidence 765522 123688965
No 451
>PHA03052 Hypothetical protein; Provisional
Probab=85.94 E-value=4.7 Score=28.46 Aligned_cols=36 Identities=28% Similarity=0.536 Sum_probs=27.9
Q ss_pred CceeEeeCCCeEEEEEEEe-e--cCCCeEEEEeCCEecc
Q psy11701 132 PEFINAAEEETVTFECKAS-G--LPEPEIHWVHNGKPIS 167 (745)
Q Consensus 132 ~~~~~v~~G~~~~l~C~~~-~--~p~~~v~W~~~g~~~~ 167 (745)
|....+..|..++|.|.+. | ...+.+.|.-|+..+.
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 4556678899999999994 3 2345899999998883
No 452
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=85.29 E-value=3.7 Score=42.58 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=13.5
Q ss_pred ecCceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEeecCCe-------------------eeeCCCceEEecCceE
Q psy11701 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPE-------------------ITEAPKDEYTVDGKTV 236 (745)
Q Consensus 177 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~-------------------~~~~~~~~~v~~g~~~ 236 (745)
...+.|.|.+++.+|+|.|+-..++..+..... +.|.|....+. .......+...+|+++
T Consensus 86 ~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf 165 (439)
T PF02480_consen 86 FNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTF 165 (439)
T ss_dssp ------------------------------------------------------------SEEEEEE--SEEE--TT--E
T ss_pred ecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcE
Confidence 345789999999999999999998776654433 45555432111 1112234456679999
Q ss_pred EEEEEEeec--C-C---CeEEEee
Q psy11701 237 VLTCRVFGA--P-K---PEVNWIH 254 (745)
Q Consensus 237 ~l~C~~~~~--p-~---~~i~W~~ 254 (745)
.|.-..... . . ..|.|+.
T Consensus 166 ~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 166 HLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp E---EEEEEESSS--EEEEEEEEE
T ss_pred EEeEEEEeccCCCCCeeEEEEEEE
Confidence 888776443 2 1 2688975
No 453
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=84.52 E-value=6.2 Score=43.14 Aligned_cols=127 Identities=11% Similarity=0.111 Sum_probs=68.3
Q ss_pred cCceeEEEecccccCcceeEEEEEecCCCCC-CCCcceEEe--CCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCcee
Q psy11701 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNG-PPSEIISFV--TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLM 535 (745)
Q Consensus 459 ~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g-~~S~~~~~~--t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~ 535 (745)
......+.+.++-+ -+|.++|+|.|..|.. ++.....+. -...+|..+..+....+ .-.+.|.|--|.. .-.+.
T Consensus 656 rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~dPt~-~~d~~ 732 (952)
T COG4733 656 RTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGDPTG-AVDIT 732 (952)
T ss_pred cccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEecCCc-ceEEe
Confidence 34566788889877 5699999999998864 333233333 22223323333333322 2346678876652 11222
Q ss_pred eEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701 536 GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593 (745)
Q Consensus 536 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~ 593 (745)
.=.+++......... .. .+....-....-.+|.|+..|.|+++++|..|...+
T Consensus 733 ~sei~~s~~~d~~~~-Ar----~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~ 785 (952)
T COG4733 733 STEIRSAVIADGNFQ-AR----SLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDK 785 (952)
T ss_pred eeeeeeeccccchhH-Hh----hhhccccccccccCcCCCceEEEEeeeccccccccc
Confidence 222222221111110 00 011111122222689999999999999999998776
No 454
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=83.98 E-value=11 Score=29.88 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=55.5
Q ss_pred CCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC----CccEEEEE
Q psy11701 507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP----STKYRIHL 582 (745)
Q Consensus 507 p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p----~t~Y~~~V 582 (745)
|++|.....+...+.-+|.+..... +-+.|.++|+........+..... ...+......+..... +..|.|.|
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~~-~~t~y~L~~~~~~~~~~~eC~~y~--~~~~~~~gC~~~~~~~~~~~~~~~~v~V 78 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEAP-PDTQYTLYYWYSPLEEEKECPHYS--KDSGTRIGCQFPVSEIDSSEFSQYNVCV 78 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTCS-TTEEEEEEEEETTSSSEEEESEEE--ESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCCC-CcccEEEEEEcCCCCccccCCCcc--ccCCceeEEEecCCCccccccceEEEEE
Confidence 5788888888999999999865422 346899999987643322222111 1122234455554444 45899999
Q ss_pred EEEecCCCCCCcce
Q psy11701 583 AGYTKAGDGAESKY 596 (745)
Q Consensus 583 ~a~n~~G~g~~S~~ 596 (745)
.+.+..|.-.+...
T Consensus 79 ~~ss~~~~i~~~~~ 92 (99)
T PF09240_consen 79 NGSSSAGSIRSSDQ 92 (99)
T ss_dssp EEEETTEEEECEEE
T ss_pred EeccCCCccCCcce
Confidence 99998887666443
No 455
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=81.80 E-value=87 Score=34.43 Aligned_cols=402 Identities=13% Similarity=0.080 Sum_probs=197.1
Q ss_pred EecCCcEEEEEEEeecCCCe--eEEEE---CCEecCCCCCeEeccCCcEEEEccCCCCCCEEE--EEEEEeCCe----ee
Q psy11701 45 ALRNKKVELFCIFGGTPLPQ--TIWSK---DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSY--TCEVSNGVG----EA 113 (745)
Q Consensus 45 v~~G~~~~l~C~~~g~p~~~--v~W~~---~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y--~C~~~~~~g----~~ 113 (745)
+..|+.+.|...+.+...-. +.+.+ +|... .....+ +-.+-+..+..+|.| .|.|.+... +.
T Consensus 203 ~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~------~~qdYs-t~n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD 275 (667)
T PRK14081 203 LICDEELVFEVESVYEEDRTILYKFVKIDSDGKQT------CIQDYS-TKNIVSYKEKKSGDYKLLCLVKDMYSNNEFDD 275 (667)
T ss_pred eecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEE------EecCcc-ccceEEEEeCCCccEEEEEEEeccCccccccc
Confidence 55688888886664433222 23222 33211 111111 112223446788988 566654321 11
Q ss_pred EEEEEEEEE--EecCeE---EecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701 114 KSYSIDLSV--LAAPYF---TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188 (745)
Q Consensus 114 ~~~~~~l~V--~~~p~~---~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~ 188 (745)
. ..+...| ..++.+ ...... ....|+.+.|.+.+.|.....+...-.|..+.... -..+..+.. .
T Consensus 276 ~-~~l~y~Vk~~~~vkI~~~~~d~~s-~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~-----Y~~~n~~~w---~ 345 (667)
T PRK14081 276 R-AVLVYTVKPYKDIKIRNFTTDLSS-PQLTDTDIELKAVAEGGKELLYRFIIKGKESEDSG-----YIRNNIYTW---K 345 (667)
T ss_pred c-eEEEEEEecCCCcEEEEEEEcCCC-CeecCceEEEEEEecCCCceEEEEEECCcEEeecc-----ccccceEEE---e
Confidence 1 2233333 233333 222222 24689999999999986655555444555443211 112233433 4
Q ss_pred CCCCEEEEEEEEeCCce------EEEEEEEEEeec--CC-eee--eCCCceEEecCceEEEEEEEeecCCCeEE-E-eeC
Q psy11701 189 KSDTGNYGCNATNSLGY------VYKDVYVNVLAH--AP-EIT--EAPKDEYTVDGKTVVLTCRVFGAPKPEVN-W-IHN 255 (745)
Q Consensus 189 ~~d~G~Y~C~~~~~~g~------~~~~~~l~v~~~--~p-~~~--~~~~~~~v~~g~~~~l~C~~~~~p~~~i~-W-~~~ 255 (745)
+..+|.|...+.-.... +...+...+... .| .+. ..+.......|+.+.+.|.+.+.....+. | .++
T Consensus 346 P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~n 425 (667)
T PRK14081 346 PKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKD 425 (667)
T ss_pred eCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEEC
Confidence 45799999988643321 223345555442 23 332 22334566779999999999876544443 3 336
Q ss_pred CEEccCceEEEeecCcEEEcccCCCCCEEEEEEEE--eCCce----EEEEEEEEEee-cce-ee--cCCCcEEEecCCeE
Q psy11701 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFAR--NKLGT----AQGSGSLTVKE-HTH-IT--DQPEDYEVEAGQSA 325 (745)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--n~~g~----~~~~~~l~v~~-~p~-~~--~~p~~~~~~~g~~~ 325 (745)
|..+....+. ....+.+. +..+|.|+..+. +.... ....+.+.|.. .|. +. ..|.......|+.+
T Consensus 426 g~~ve~~~Y~--~~~~~~f~---P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i 500 (667)
T PRK14081 426 GKEEEKIDYG--KNNWVNFI---PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDI 500 (667)
T ss_pred CEEEEEeecc--cccEEEEE---ECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEE
Confidence 6655432221 12233333 367899987664 33222 24566777765 232 11 22433446789999
Q ss_pred EEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEE--eCCce----EEEEEEEEEe
Q psy11701 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ--TELDF----IEAQATLTVQ 399 (745)
Q Consensus 326 ~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~--n~~g~----~~~~~~l~v~ 399 (745)
++.|.+.+....-+.+.-..+|...... .+ .....+.+. +..+|.|+..+. |.... ....+.+.|.
T Consensus 501 ~~~~~~~~~k~v~y~y~~~~NG~~v~~t---~Y--s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~ 572 (667)
T PRK14081 501 EIEVIIQNTKDVLIKYILKINGHKVEET---DY--IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVR 572 (667)
T ss_pred EEEEEEeCCCeEEEEEEEEECCEEEEEe---ec--cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEc
Confidence 9999999865422333333566554211 11 112234443 445677876554 43322 2234555565
Q ss_pred ccCCCCCCceeEEeec--CceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCccee
Q psy11701 400 VPLEAPSNFTLIQVID--AKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF 477 (745)
Q Consensus 400 ~pp~~P~~~~~~~~~~--~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~ 477 (745)
.+ .|+.+..+..... .-.-.++|.... .+|.-.-|+......+ .|..+.- -+...-+++.....+ .|.
T Consensus 573 e~-~pi~nt~~~~~~~~~~~n~~~t~~~~~---~gg~~v~Yef~v~~~g----~w~~vq~-ys~k~~ysf~p~~~g-~Y~ 642 (667)
T PRK14081 573 EA-LPITNTKIKTSKKKFKCNEEVTFSVKS---EGGKDVCYEFYIMEKG----EWKLVQK-YSRKNYYSFMPFNKG-KYK 642 (667)
T ss_pred CC-CCceeeEEEeecceEEcCCeEEEEEEc---cCCCcEEEEEEEEECC----cEEEEee-ccccCceEEEeccCC-cEE
Confidence 33 3444544322011 112345565531 2344446776444322 2322222 233444554443333 366
Q ss_pred EEEEEecCC
Q psy11701 478 ARVLAFNGA 486 (745)
Q Consensus 478 ~~V~a~n~~ 486 (745)
+.|.+..-.
T Consensus 643 ilvl~ks~~ 651 (667)
T PRK14081 643 VLVLCKSYY 651 (667)
T ss_pred EEEEEeccc
Confidence 666665443
No 456
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=81.30 E-value=1.5 Score=46.55 Aligned_cols=259 Identities=12% Similarity=0.083 Sum_probs=25.3
Q ss_pred eEEEEEEEeecCCCeEEEEeCCEeccCCC-CCCceeecCceEEEccCCCCC-CEEEEEEEE--eCC-ceEEEEEEEEEee
Q psy11701 142 TVTFECKASGLPEPEIHWVHNGKPISQAP-PNPRRKVGPNRITIENLRKSD-TGNYGCNAT--NSL-GYVYKDVYVNVLA 216 (745)
Q Consensus 142 ~~~l~C~~~~~p~~~v~W~~~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~--~~~-g~~~~~~~l~v~~ 216 (745)
.+.|.|... -...+.|..-........ .... ......|.|..-.... ...|...+. ... ......+.|.|..
T Consensus 2 ~~~~~C~~~--~~~~y~W~~~~~~~~~~~~~~~~-~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~ 78 (440)
T PF02010_consen 2 HVSLNCNDA--STVTYNWTVFSGPSNSIVQDMDN-SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEP 78 (440)
T ss_dssp ----------------BEEEEES-TT-EEESTTT---SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE-
T ss_pred Ccccccccc--cceEEEEEEEecCCcCccccccc-cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEee
Confidence 356788332 455889986321111000 0000 2334578888766632 235666666 222 2244556777765
Q ss_pred cCCeeeeCC-CceEEecCceEEEEEEEeecCC-------CeEEEeeCCEEcc--C------ceEEEeecCcEEEcccCCC
Q psy11701 217 HAPEITEAP-KDEYTVDGKTVVLTCRVFGAPK-------PEVNWIHNQKELT--G------GRYTILETGDLKITDVAFA 280 (745)
Q Consensus 217 ~~p~~~~~~-~~~~v~~g~~~~l~C~~~~~p~-------~~i~W~~~~~~~~--~------~~~~~~~~~~l~i~~~~~~ 280 (745)
.+......- ....+..++.+.|.....-.|. ..+.|........ . ..........+.|......
T Consensus 79 s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~ 158 (440)
T PF02010_consen 79 SPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLS 158 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcC
Confidence 333322221 2223333456676654333331 3577876433222 0 0111122345666544433
Q ss_pred CCEEEEEEEE--eCCc-eEEEEEEEEEee--cceeecCCC---cEEEecCCeEEEEEEEEecC--CCCcEEEEee-----
Q psy11701 281 DSGEYTCFAR--NKLG-TAQGSGSLTVKE--HTHITDQPE---DYEVEAGQSATFRCNAVSDP--SLKLSIVWLR----- 345 (745)
Q Consensus 281 d~G~Y~C~~~--n~~g-~~~~~~~l~v~~--~p~~~~~p~---~~~~~~g~~~~l~C~~~~~~--~~~~~i~W~~----- 345 (745)
....|..++. ...+ .......+.+.. +|.+..... ...+..++.+.|.......+ .....+.|..
T Consensus 159 ~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~ 238 (440)
T PF02010_consen 159 PGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDG 238 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccc
Confidence 2222555443 3333 223334444432 222211111 12256666666665555432 3347788886
Q ss_pred ---CCeeccCCCCCeEEEcCCeEEEEec--CCCCCCEEEEEEEEeCCceE-EEEEEEEEeccCC
Q psy11701 346 ---GSEPIDFESEPRFVQSNDYSLTVTK--SSELDSGQYTCRAQTELDFI-EAQATLTVQVPLE 403 (745)
Q Consensus 346 ---~~~~~~~~~~~~~~~~~~~~l~i~~--~~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~pp~ 403 (745)
....+...............|.|.. +.....+.+++.+.+..+.. .+...+.+..||.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~ 302 (440)
T PF02010_consen 239 VSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPS 302 (440)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0111100001111112223455553 34444556666776655543 4556666654443
No 457
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=80.57 E-value=46 Score=30.39 Aligned_cols=94 Identities=15% Similarity=0.305 Sum_probs=48.4
Q ss_pred eEEEeeCCEEccCce----EEEeecC------cEEEc-ccCCCCCEEEEEEEEeCCce-EEE----EEEEEEeecceeec
Q psy11701 249 EVNWIHNQKELTGGR----YTILETG------DLKIT-DVAFADSGEYTCFARNKLGT-AQG----SGSLTVKEHTHITD 312 (745)
Q Consensus 249 ~i~W~~~~~~~~~~~----~~~~~~~------~l~i~-~~~~~d~G~Y~C~~~n~~g~-~~~----~~~l~v~~~p~~~~ 312 (745)
.+.|+.|+..+.... .....+| +|++. +......=..+|.+.-.... ... ...-.|..+|.+.
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs- 86 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS- 86 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE-
Confidence 578999888765221 1112223 35552 22223345789988633222 212 2222233333222
Q ss_pred CCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeec
Q psy11701 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI 350 (745)
Q Consensus 313 ~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~ 350 (745)
+.+..| ...|.+..-|.....+.|.-++...
T Consensus 87 ----v~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 87 ----VRFEDG---YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred ----EEecCC---EEEEEcceeeCCCeEEEEEECCccC
Confidence 223333 4458888777655899999877653
No 458
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=79.35 E-value=3.8 Score=29.35 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=20.4
Q ss_pred EEEecccccCCcceeEEEEecCcccCCC
Q psy11701 703 TTEVDKFVPASKNFARVLAFNGAYNGPP 730 (745)
Q Consensus 703 ~~~i~~L~p~~~Y~~~v~A~~~~G~g~~ 730 (745)
.+.+++|.|| .|+|.|+|.+..|.-..
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNGKWSS 56 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS-B-S
T ss_pred EEEEEeCCCE-EEEEEEEEECCCCCcCc
Confidence 8899999999 79999999998886543
No 459
>PHA03281 envelope glycoprotein E; Provisional
Probab=79.34 E-value=86 Score=32.85 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=49.0
Q ss_pred cCceEEEccCCCCCCEEEEEEEEeCCceEEE-EEEEEEeecC------CeeeeCC----------CceEEecCceEEEEE
Q psy11701 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYK-DVYVNVLAHA------PEITEAP----------KDEYTVDGKTVVLTC 240 (745)
Q Consensus 178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~-~~~l~v~~~~------p~~~~~~----------~~~~v~~g~~~~l~C 240 (745)
..+.|.|.+++.+++|.|+-..+...|.... .+.|.|...+ |.+...+ ......+|+++.|.-
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v 375 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM 375 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence 4568999999999999999888866565444 4555554322 1111111 122445799998887
Q ss_pred EEeec--CC---CeEEEee
Q psy11701 241 RVFGA--PK---PEVNWIH 254 (745)
Q Consensus 241 ~~~~~--p~---~~i~W~~ 254 (745)
..... .. ..+.|+.
T Consensus 376 ~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 376 HLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEeeeccCCCceeEEEEEE
Confidence 76543 22 3688975
No 460
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=79.14 E-value=5.5 Score=30.57 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=40.4
Q ss_pred EEEEEEE-eecCCCeEEEEeC--CEeccCCCCCCc-eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701 143 VTFECKA-SGLPEPEIHWVHN--GKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212 (745)
Q Consensus 143 ~~l~C~~-~~~p~~~v~W~~~--g~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l 212 (745)
+.-+|.+ .|.|++.|+|.-+ |..-........ ...-.+.+.+......|.-..+|.+..........+.|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 4558986 6789999999852 332110000111 11112356666777788888999998864444444443
No 461
>KOG1225|consensus
Probab=77.93 E-value=4.3 Score=42.64 Aligned_cols=156 Identities=11% Similarity=0.037 Sum_probs=88.3
Q ss_pred CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701 506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY 585 (745)
Q Consensus 506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~ 585 (745)
+|..+....-+..++-+.|.. ......|...|.......... .. ........+.+..|.|++.|.++|.++
T Consensus 368 ~~~~~~~~~cs~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~----r~~~~~~~~~~~~~~~g~~~~~~~~~v 438 (525)
T KOG1225|consen 368 DPSLLLITECSPPSLCIAGVG----RRRVTHCAGTYCPLGESGGDL-QG----RVPGDANSVDIQGLEPGDEYNCSVNTV 438 (525)
T ss_pred CchhhcccccCCCceeecccc----ccccccccccccccccCCCcc-ce----eeccceeeeeeeeecCCcceeeehhhh
Confidence 334444445566677778872 123455656565533221111 11 115667889999999999999999886
Q ss_pred ec-CCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEE
Q psy11701 586 TK-AGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664 (745)
Q Consensus 586 n~-~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (745)
-. .|..+...... .-...+....+....++++-+.|..+.... ..+.++|.+- ............ ..+.+.
T Consensus 439 ~~~~~~~~~~~~~~-~~~~~~g~~~v~~~~~~s~e~~g~~~s~~~-----~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 510 (525)
T KOG1225|consen 439 AANIGSLPKDKSET-TVLCWNGGLCVDGETESSLEVGGPCPSSGT-----CGWEVRCGPC-GNDGGVNAEPPP-ECTSYD 510 (525)
T ss_pred hhhhccCCcccccc-eEeecCCceeeeeeeeccccccCCCCCccc-----cceEEEeeec-CcccccccCCCC-CCCCCC
Confidence 44 44444432211 111222223334456788899997666543 5677777322 222112222222 567788
Q ss_pred eccCCCcceEEEEE
Q psy11701 665 LANQPTFQPYEIKV 678 (745)
Q Consensus 665 ~~~l~~~~~Y~i~v 678 (745)
.++|.+-+.|.+.+
T Consensus 511 ~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 511 RTGLGPCTEYEVSV 524 (525)
T ss_pred ccCcccccceeccc
Confidence 88999999998753
No 462
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=77.54 E-value=5.5 Score=42.21 Aligned_cols=290 Identities=18% Similarity=0.179 Sum_probs=27.4
Q ss_pred cEEEEEEEeecCCCeeEEEECCEecCCCCCeEe----ccCCcEEEEccCCCCCC-EEEEEEEE--eCCeeeEEEEEEEEE
Q psy11701 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ----GNYGKSLIIKHVEFSDQ-GSYTCEVS--NGVGEAKSYSIDLSV 122 (745)
Q Consensus 50 ~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~----~~~~~~L~i~~~~~~d~-G~Y~C~~~--~~~g~~~~~~~~l~V 122 (745)
.+.|.|... -...+.|.....+. ..... ......|.|......-. -.|...+. ...+......+.|.|
T Consensus 2 ~~~~~C~~~--~~~~y~W~~~~~~~---~~~~~~~~~~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V 76 (440)
T PF02010_consen 2 HVSLNCNDA--STVTYNWTVFSGPS---NSIVQDMDNSSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTV 76 (440)
T ss_dssp ----------------BEEEEES-T---T-EEESTTT--SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEE
T ss_pred Ccccccccc--cceEEEEEEEecCC---cCccccccccCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEE
Confidence 467789332 23478897532111 11111 12345788888776333 25677776 334444456677777
Q ss_pred EecCeEEec--CceeEeeCCCeEEEEEEEeecC-------CCeEEEEeCCEeccCC-----CCCCceeecCceEEEccCC
Q psy11701 123 LAAPYFTVE--PEFINAAEEETVTFECKASGLP-------EPEIHWVHNGKPISQA-----PPNPRRKVGPNRITIENLR 188 (745)
Q Consensus 123 ~~~p~~~~~--~~~~~v~~G~~~~l~C~~~~~p-------~~~v~W~~~g~~~~~~-----~~~~~~~~~~~~L~i~~v~ 188 (745)
...|..... .....+..++.+.|-....-.| ...+.|.-....-... ............|.|....
T Consensus 77 ~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~ 156 (440)
T PF02010_consen 77 EPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPAST 156 (440)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred eeccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHH
Confidence 765532221 2222333345677666442222 2477887643322200 0011122234566665444
Q ss_pred CCCCEEEEEEEEeCCceE---EEEEEEEEee-cCCeeeeCCC---ceEEecCceEEEEEEEeec----CCCeEEEee---
Q psy11701 189 KSDTGNYGCNATNSLGYV---YKDVYVNVLA-HAPEITEAPK---DEYTVDGKTVVLTCRVFGA----PKPEVNWIH--- 254 (745)
Q Consensus 189 ~~d~G~Y~C~~~~~~g~~---~~~~~l~v~~-~~p~~~~~~~---~~~v~~g~~~~l~C~~~~~----p~~~i~W~~--- 254 (745)
......|...+.-..+.. .....+.+.. .+|.+..... ...+..++.+.|...+.+. ....+.|..
T Consensus 157 l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~ 236 (440)
T PF02010_consen 157 LSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSL 236 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeec
Confidence 333333666655333322 2333444432 2344333322 1237778888776555432 234678887
Q ss_pred -----CCEEcc---CceEEEeecCcEEEcccCCCCCEEEEEE--EEeCCceE-EEEEEEEEeecce---eecCCCcEEEe
Q psy11701 255 -----NQKELT---GGRYTILETGDLKITDVAFADSGEYTCF--ARNKLGTA-QGSGSLTVKEHTH---ITDQPEDYEVE 320 (745)
Q Consensus 255 -----~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~n~~g~~-~~~~~l~v~~~p~---~~~~p~~~~~~ 320 (745)
....+. .....-.....|.|..-.......|..+ +....+.. .....+.+..+|. ....|... ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g~c~v~P~~G-~a 315 (440)
T PF02010_consen 237 DGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGGSCSVSPSSG-YA 315 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 111111 0001111223466665555555666654 44443332 4556666665553 22233222 23
Q ss_pred cCCeEEEEEEEEecCCCCcEEEEee
Q psy11701 321 AGQSATFRCNAVSDPSLKLSIVWLR 345 (745)
Q Consensus 321 ~g~~~~l~C~~~~~~~~~~~i~W~~ 345 (745)
....+++.|....+....+.+++..
T Consensus 316 l~T~Ft~~c~~~~d~~~pL~Y~f~~ 340 (440)
T PF02010_consen 316 LETTFTITCSGWTDDDQPLTYQFYY 340 (440)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4467888887653332224455544
No 463
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=76.80 E-value=32 Score=26.48 Aligned_cols=56 Identities=16% Similarity=0.335 Sum_probs=36.1
Q ss_pred eEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK 208 (745)
Q Consensus 142 ~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~ 208 (745)
...|.+.+.+. ...+.|+.||+.+...... ..+.+ .....|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~-------~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG-------HQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC-------CeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 45555566554 4499999999999432211 23333 335789999999887776543
No 464
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=73.72 E-value=8.4 Score=27.18 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=28.5
Q ss_pred EecCCcEEEEEEEeecCCCeeEEEE---CC--EecCCCCC-----eEeccCCcEEEEccCCCCCCE
Q psy11701 45 ALRNKKVELFCIFGGTPLPQTIWSK---DG--VPINPSDR-----ISQGNYGKSLIIKHVEFSDQG 100 (745)
Q Consensus 45 v~~G~~~~l~C~~~g~p~~~v~W~~---~~--~~i~~~~~-----~~~~~~~~~L~i~~~~~~d~G 100 (745)
|..|+.++| .|.+...|+|++ ++ ..+-.... +...-.+..|+|-+|+..++|
T Consensus 2 v~~G~N~TL----~Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTL----VGPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEE----eCCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 567888888 344555799984 22 23322221 122233455677676666554
No 465
>PLN02533 probable purple acid phosphatase
Probab=72.01 E-value=16 Score=38.17 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=46.0
Q ss_pred CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCc----cccc--ccccCCCcceeeecCCCCC
Q psy11701 502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPL----LERL--PYISDPTTTSAKLAGLEPS 575 (745)
Q Consensus 502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~l~~L~p~ 575 (745)
..|..|..+++.-.+.+++.|+|.-..... + .|+|-...+...... .+.. ..-..+......|.+|+|+
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~~~~~-~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~ 113 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQDSIP-P----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPN 113 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECCCCCC-C----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCC
Confidence 456678899988888999999998765322 2 355543322110000 0000 0000223345789999999
Q ss_pred ccEEEEEE
Q psy11701 576 TKYRIHLA 583 (745)
Q Consensus 576 t~Y~~~V~ 583 (745)
|.|.++|-
T Consensus 114 T~Y~Yrvg 121 (427)
T PLN02533 114 TVYYYKCG 121 (427)
T ss_pred CEEEEEEC
Confidence 99999984
No 466
>KOG1026|consensus
Probab=71.90 E-value=6.6 Score=43.19 Aligned_cols=250 Identities=18% Similarity=0.179 Sum_probs=131.4
Q ss_pred ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe---ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701 42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI 118 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 118 (745)
++....++...+.|...+.+...+.|.++..++...-+... ...+..|.+.+....+.|.+.|...+...... ...
T Consensus 61 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~ 139 (774)
T KOG1026|consen 61 NITEIFIENGQLLCIVSGNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLS-LTE 139 (774)
T ss_pred hHHHHHHhhhhhcccccCCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccc-cch
Confidence 45556678888899998776668999887666553322211 11122366666666777777666654321111 000
Q ss_pred EEEEEecC----------------------------------------------eEEecCceeEeeCCCeEEEEEEEeec
Q psy11701 119 DLSVLAAP----------------------------------------------YFTVEPEFINAAEEETVTFECKASGL 152 (745)
Q Consensus 119 ~l~V~~~p----------------------------------------------~~~~~~~~~~v~~G~~~~l~C~~~~~ 152 (745)
...+..++ ..........+..|..+++.|...+.
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~ 219 (774)
T KOG1026|consen 140 LSLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQAGI 219 (774)
T ss_pred hhhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeecccC
Confidence 00010000 00000112345678999999999999
Q ss_pred CCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEec
Q psy11701 153 PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD 232 (745)
Q Consensus 153 p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~ 232 (745)
|.+...|+.++.............. +....+.+ +.|.+.|..+.....+.+.+...............
T Consensus 220 ~vp~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~p~~~~~~~~~~~~--- 287 (774)
T KOG1026|consen 220 PVPCHYWFPNCLASSNTNQTSSLCR-SECEVLEN--------DLCIAENAVARSNPSILLVVDLPKAEVLLCSPLSD--- 287 (774)
T ss_pred CCcceeeecccccccCCCccccccc-ccceeeec--------hhhHHHHhhhhcCceeeeEEecccccccCCCCccc---
Confidence 9999999988766553322222211 11111111 89999998887776665555432112211111100
Q ss_pred CceEEEEEEEe---ecCCCeEEEeeCCEEccCceE---EEeec-CcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701 233 GKTVVLTCRVF---GAPKPEVNWIHNQKELTGGRY---TILET-GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305 (745)
Q Consensus 233 g~~~~l~C~~~---~~p~~~i~W~~~~~~~~~~~~---~~~~~-~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~ 305 (745)
.-.|... +.+.+...|..++..+.-... ..... +-+....-+..+.|.|.|.+.+..|.........+.
T Consensus 288 ----~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 288 ----HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFM 363 (774)
T ss_pred ----cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeeecccCccccccCcCccc
Confidence 2223322 345556778776654321100 00010 223333335578899999999888776555444444
Q ss_pred ecc
Q psy11701 306 EHT 308 (745)
Q Consensus 306 ~~p 308 (745)
..|
T Consensus 364 ~~P 366 (774)
T KOG1026|consen 364 SRP 366 (774)
T ss_pred cCC
Confidence 433
No 467
>PHA03240 envelope glycoprotein M; Provisional
Probab=70.04 E-value=5.9 Score=35.12 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=40.1
Q ss_pred eeEecCCcEEEEEEEeecCCCeeEEEE--------CC---EecC---C--------------CCCeEeccCCcEEEEccC
Q psy11701 43 EVALRNKKVELFCIFGGTPLPQTIWSK--------DG---VPIN---P--------------SDRISQGNYGKSLIIKHV 94 (745)
Q Consensus 43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~--------~~---~~i~---~--------------~~~~~~~~~~~~L~i~~~ 94 (745)
+.+.+|++|+|.-.-.-.|.-.+.|++ +| .+|- . +.++.+.-.+++|.|-++
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~v 112 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHL 112 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEE
Confidence 457789999995433223555899998 11 1110 0 112333345678999999
Q ss_pred CCCCCEEEEEEE
Q psy11701 95 EFSDQGSYTCEV 106 (745)
Q Consensus 95 ~~~d~G~Y~C~~ 106 (745)
..+|.|.|.-.-
T Consensus 113 n~sd~~nYcr~k 124 (258)
T PHA03240 113 NLSDAGEYCRKK 124 (258)
T ss_pred eecCcchhhhcc
Confidence 999999995444
No 468
>KOG4806|consensus
Probab=67.40 E-value=42 Score=32.73 Aligned_cols=121 Identities=13% Similarity=0.162 Sum_probs=70.1
Q ss_pred ccccCcceeEEEEEecCCCCCCCCcceEEeC---CCCCCCCCCceeEEEc--CCceEEEEeeCCCCCCCceeeEEEEEEE
Q psy11701 469 KFVPASKNFARVLAFNGAYNGPPSEIISFVT---PEGVPGTVQSLEAIPL--GSSAFYLKWVKPEQPNGVLMGYKIKYQS 543 (745)
Q Consensus 469 ~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t---~~~~P~~p~~~~~~~~--~~~~i~l~W~~p~~~~g~i~~Y~v~~~~ 543 (745)
.+.++..|.+++...|.... .....+-..| ..+-|.-|.+-++..+ +.++.++.|.-..+. -..|-|+.+.
T Consensus 290 vv~~~~~~~~rf~~~ndde~-~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~---~~kyCIy~~~ 365 (454)
T KOG4806|consen 290 VVLPGERYLMRFEPSNDDEA-LQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE---ELKYCIYVFN 365 (454)
T ss_pred EecCCCceEEEEEecCCchh-hheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch---heeEEEEEec
Confidence 45677888888888876432 2222222222 2345666666665544 577899999865441 3456666655
Q ss_pred cCCcccCC----------------------cccc-cccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701 544 VKGTKVGP----------------------LLER-LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593 (745)
Q Consensus 544 ~~~~~~~~----------------------~~~~-~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~ 593 (745)
..+.+... +..- .......+..+-+|.||.|+..|.+-|.|.-.+|..-+
T Consensus 366 ~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lp 438 (454)
T KOG4806|consen 366 LPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLP 438 (454)
T ss_pred ccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccc
Confidence 43311000 0000 00011223345678899999999999999888876665
No 469
>PLN02533 probable purple acid phosphatase
Probab=67.28 E-value=51 Score=34.53 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=49.3
Q ss_pred cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCce-----eEEE----EccCceeEEEecccc
Q psy11701 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSI-----RELI----VNKGESTTTEVDKFV 471 (745)
Q Consensus 401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~-----~~~~----~~~~~~~~~~i~~L~ 471 (745)
.+..|+.+.+.- .+.+++.++|.-..... + .++|-...+..... .... ...+......|++|+
T Consensus 40 ~~~~P~qvhls~-~~~~~m~V~W~T~~~~~---~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~ 111 (427)
T PLN02533 40 DPTHPDQVHISL-VGPDKMRISWITQDSIP---P----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLK 111 (427)
T ss_pred CCCCCceEEEEE-cCCCeEEEEEECCCCCC---C----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCC
Confidence 455677777755 56788999998743211 1 23343222111000 0000 012234567899999
Q ss_pred cCcceeEEEEEecCCCCCCCCcceEEeCCC
Q psy11701 472 PASKNFARVLAFNGAYNGPPSEIISFVTPE 501 (745)
Q Consensus 472 ~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~ 501 (745)
|++.|.++|- ....|....++|.+
T Consensus 112 p~T~Y~Yrvg------~~~~s~~~~F~T~p 135 (427)
T PLN02533 112 PNTVYYYKCG------GPSSTQEFSFRTPP 135 (427)
T ss_pred CCCEEEEEEC------CCCCccceEEECCC
Confidence 9999999983 22235667888854
No 470
>PHA03189 UL14 tegument protein; Provisional
Probab=66.08 E-value=46 Score=31.82 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.4
Q ss_pred cCCCCCCEEEEEEEEeCCce
Q psy11701 186 NLRKSDTGNYGCNATNSLGY 205 (745)
Q Consensus 186 ~v~~~d~G~Y~C~~~~~~g~ 205 (745)
++..+.+|.|.|...|....
T Consensus 139 ~v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHG 158 (348)
T ss_pred EEEecccceEEEEeccccce
Confidence 56778899999999987644
No 471
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=64.19 E-value=23 Score=25.21 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=20.5
Q ss_pred EEEecccccCcceeEEEEEecCCCCCCCC
Q psy11701 464 TTEVDKFVPASKNFARVLAFNGAYNGPPS 492 (745)
Q Consensus 464 ~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S 492 (745)
.+.+.+|.||+ |.|.|+|.+..|.....
T Consensus 30 ~~~~~~L~~G~-Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPPGK-YTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--SEE-EEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCCEE-EEEEEEEECCCCCcCcc
Confidence 88899998887 99999999987765443
No 472
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=62.01 E-value=22 Score=27.45 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=36.5
Q ss_pred EEEEEE-EeecCCCeEEEeeC--CEEccCceEEEeecC------cEEEcccCCCCCEEEEEEEEeCCceEEEEE
Q psy11701 236 VVLTCR-VFGAPKPEVNWIHN--QKELTGGRYTILETG------DLKITDVAFADSGEYTCFARNKLGTAQGSG 300 (745)
Q Consensus 236 ~~l~C~-~~~~p~~~i~W~~~--~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~ 300 (745)
+.-.|. +.|.|++.|+|.-+ |.. ........++ .+.+......|.-..+|.+.+........+
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~--etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~ 94 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA--EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSV 94 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce--eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccE
Confidence 455798 67889999999853 221 1111111222 355555566777789999987643333333
No 473
>PF14292 SusE: SusE outer membrane protein
Probab=59.73 E-value=90 Score=25.79 Aligned_cols=32 Identities=9% Similarity=0.312 Sum_probs=23.8
Q ss_pred cCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCC
Q psy11701 515 LGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKG 546 (745)
Q Consensus 515 ~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~ 546 (745)
.....+++.|+++...+. ....|.|+....+.
T Consensus 42 ~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~ 74 (122)
T PF14292_consen 42 ASDNAVTFTWTAADYGGPDAPVTYTLQFDKKGN 74 (122)
T ss_pred cCCceEEEEEECCccCCCCCceEEEEEEeccCC
Confidence 455689999999876544 56689999877553
No 474
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=59.38 E-value=47 Score=25.65 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=38.9
Q ss_pred CCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCC-Ccceeee-cCCCCCccEEEEEEE
Q psy11701 516 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP-TTTSAKL-AGLEPSTKYRIHLAG 584 (745)
Q Consensus 516 ~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l-~~L~p~t~Y~~~V~a 584 (745)
....++|.|+.... ....|.|..+................+... ....+.+ .+|.++..|.|++..
T Consensus 11 ~g~~~~I~W~~~~~---~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 11 AGQPITITWTSDGT---DPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CCCcEEEEEeCCCC---CCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 34679999997642 125678888766553222222222122221 3345555 459999999999983
No 475
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=58.88 E-value=1.1e+02 Score=25.61 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=20.2
Q ss_pred cCCCCCeeEeeccceeEecCCcEEEEEEE--eecC---CCeeEEEE
Q psy11701 29 NRHAPKQQYVTRKKEVALRNKKVELFCIF--GGTP---LPQTIWSK 69 (745)
Q Consensus 29 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~--~g~p---~~~v~W~~ 69 (745)
.|.=|-.+...|-...+..|++|.++|.. .|.- .-.+.|+.
T Consensus 28 QQ~YpF~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ 73 (137)
T PF12988_consen 28 QQAYPFTVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQ 73 (137)
T ss_dssp ----SEEEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-
T ss_pred eecCCcEEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEe
Confidence 44456666677777789999999999998 3332 22566654
No 476
>PHA03189 UL14 tegument protein; Provisional
Probab=56.35 E-value=85 Score=30.16 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=15.9
Q ss_pred CCceEEecCceEEEEEEEeec
Q psy11701 225 PKDEYTVDGKTVVLTCRVFGA 245 (745)
Q Consensus 225 ~~~~~v~~g~~~~l~C~~~~~ 245 (745)
|....+..|+.+++.|.+...
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCccccCCCceeeeeeeecCC
Confidence 344556689999999998655
No 477
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=55.40 E-value=1.4e+02 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.3
Q ss_pred ecCCCCCccEEEEEEEEecCCCCCC
Q psy11701 569 LAGLEPSTKYRIHLAGYTKAGDGAE 593 (745)
Q Consensus 569 l~~L~p~t~Y~~~V~a~n~~G~g~~ 593 (745)
+..|+++..|+++|.|.+.+|....
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~~~ 140 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQST 140 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCEEE
Confidence 4578899999999999999986554
No 478
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=53.34 E-value=62 Score=22.04 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=23.5
Q ss_pred EEecccccCCcceeEEEEecCcccCCCCcceEEe
Q psy11701 704 TEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV 737 (745)
Q Consensus 704 ~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~ 737 (745)
+.+..+ ..-.|.|+|.|.+.+|+........|+
T Consensus 16 ~t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~t 48 (54)
T PF13754_consen 16 FTVPAL-ADGTYTITVTATDAAGNTSTSSSVTFT 48 (54)
T ss_pred EeCCCC-CCccEEEEEEEEeCCCCCCCccceeEE
Confidence 445555 577899999999999996555444443
No 479
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=52.64 E-value=1.1e+02 Score=23.76 Aligned_cols=81 Identities=12% Similarity=0.213 Sum_probs=47.8
Q ss_pred eeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeec---CcEEEcccCCCCCEEEEEEEEeCCceEE
Q psy11701 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILET---GDLKITDVAFADSGEYTCFARNKLGTAQ 297 (745)
Q Consensus 221 ~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~n~~g~~~ 297 (745)
+.+.|....+..|+++.+.|...-..+..+-|.-.-. +...... ..+.+.+++. ...-.|.+.-......
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~-----k~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~ 78 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS-----KTELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSS 78 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE-----EEEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecC-----CcccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEE
Confidence 3445667788899999999997533222444542211 1111111 1477888875 4577899876544567
Q ss_pred EEEEEEEeecc
Q psy11701 298 GSGSLTVKEHT 308 (745)
Q Consensus 298 ~~~~l~v~~~p 308 (745)
+++.|+|..+|
T Consensus 79 ~~~~ItVY~~P 89 (91)
T PF03921_consen 79 ASANITVYKPP 89 (91)
T ss_dssp EEEEEEEEB--
T ss_pred eEEeeEEeCCC
Confidence 78888887765
No 480
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=51.64 E-value=88 Score=22.47 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=31.2
Q ss_pred eeEEEECCEecCCCCCeEeccCC---cEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701 64 QTIWSKDGVPINPSDRISQGNYG---KSLIIKHVEFSDQGSYTCEVSNGVGEAK 114 (745)
Q Consensus 64 ~v~W~~~~~~i~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 114 (745)
...|+++++.+. ++.+...+ ++..-+.......|.+++.+.+..|...
T Consensus 8 ~H~W~~~g~~~~---~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l 58 (66)
T PF11141_consen 8 YHRWYKNGKLVA---RIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVL 58 (66)
T ss_pred EEEEEECCEEEE---EEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEE
Confidence 467999998764 22222222 1334444555889999999998877766
No 481
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=50.39 E-value=1.7e+02 Score=25.53 Aligned_cols=23 Identities=17% Similarity=-0.012 Sum_probs=20.5
Q ss_pred ecccccCCcceeEEEEecCcccC
Q psy11701 706 VDKFVPASKNFARVLAFNGAYNG 728 (745)
Q Consensus 706 i~~L~p~~~Y~~~v~A~~~~G~g 728 (745)
+..|.++..|.++|.|.+.+|+-
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCE
Confidence 35788999999999999999984
No 482
>KOG0200|consensus
Probab=47.95 E-value=1.6e+02 Score=32.66 Aligned_cols=108 Identities=27% Similarity=0.286 Sum_probs=60.1
Q ss_pred CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEE-EE-ecCeE-EecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC
Q psy11701 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS-VL-AAPYF-TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN 162 (745)
Q Consensus 86 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~-V~-~~p~~-~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~ 162 (745)
...+.+..+...|.|.|+|.+.+ ....+.+. .. ..+.+ ...+.......+....+ +...+.+.+.|...
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 83 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN-----INLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTN 83 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec-----CceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeee
Confidence 44688889999999999999988 11112222 11 11111 12234444455666665 32223557777765
Q ss_pred CEec-----cCCCCC-----------CceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701 163 GKPI-----SQAPPN-----------PRRKVGPNRITIENLRKSDTGNYGCNATN 201 (745)
Q Consensus 163 g~~~-----~~~~~~-----------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 201 (745)
.... ...... .........+.+.++...+.|.|.|...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 84 LEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred ecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 4211 000000 00011234678899999999999999876
No 483
>PHA03240 envelope glycoprotein M; Provisional
Probab=45.37 E-value=31 Score=30.88 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.1
Q ss_pred cCceEEEccCCCCCCEEEEEEE
Q psy11701 178 GPNRITIENLRKSDTGNYGCNA 199 (745)
Q Consensus 178 ~~~~L~i~~v~~~d~G~Y~C~~ 199 (745)
.+++|.|.++..+|.|+|.-.-
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k 124 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKK 124 (258)
T ss_pred ccceEEEEEEeecCcchhhhcc
Confidence 4678999999999999996443
No 484
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=43.66 E-value=5.8e+02 Score=29.62 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=50.7
Q ss_pred CCCCCCceeEEEcCCceEEEEeeCCCC--CCCceeeEEEEEEEcCCcc------cCCcccccc-cccCCCcce--eeecC
Q psy11701 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQ--PNGVLMGYKIKYQSVKGTK------VGPLLERLP-YISDPTTTS--AKLAG 571 (745)
Q Consensus 503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~------~~~~~~~~~-~~~~~~~~~--~~l~~ 571 (745)
+|+...+|++.. ....|.|+|..|-+ ..|...+|.|.|...-.+- .....+... ....+..-. |...+
T Consensus 755 PP~rItDL~~~~-~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~ 833 (863)
T TIGR00868 755 PPSKITDLEAGF-QGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEG 833 (863)
T ss_pred CCccceeeEEee-cCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCc
Confidence 455667777754 45569999999975 5678899999997542110 000110000 000112222 33334
Q ss_pred C--CCCccEEEEEEEEecCCC
Q psy11701 572 L--EPSTKYRIHLAGYTKAGD 590 (745)
Q Consensus 572 L--~p~t~Y~~~V~a~n~~G~ 590 (745)
. ..++.|.|.|+|++..|.
T Consensus 834 ~~~~~~~~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 834 IPIENGTDLFIAVQAIDKANL 854 (863)
T ss_pred ccccCCeEEEEEEEEEccccc
Confidence 2 257789999999998864
No 485
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=41.45 E-value=90 Score=21.25 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=24.6
Q ss_pred ceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEe
Q psy11701 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV 498 (745)
Q Consensus 461 ~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~ 498 (745)
..-++.+..+ .+-.|.+.+.|.+..|.........++
T Consensus 12 G~Ws~t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~t 48 (54)
T PF13754_consen 12 GNWSFTVPAL-ADGTYTITVTATDAAGNTSTSSSVTFT 48 (54)
T ss_pred CcEEEeCCCC-CCccEEEEEEEEeCCCCCCCccceeEE
Confidence 3334555555 567799999999999986554333343
No 486
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=41.16 E-value=1.4e+02 Score=21.93 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=36.0
Q ss_pred eCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEE--eCCceEEEEEEEE
Q psy11701 138 AEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT--NSLGYVYKDVYVN 213 (745)
Q Consensus 138 ~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~--~~~g~~~~~~~l~ 213 (745)
..|+.+.|.+...+ .....+.|.+++...... .. ........|.|+..+. +..|.......+.
T Consensus 12 ~~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~----------~~---~~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~ 77 (79)
T smart00089 12 VAGESVTFTATSSDDGSIVSYTWDFGDGTSSTG----------PT---VTHTYTKPGTYTVTLTVTNAVGSASATVTVV 77 (79)
T ss_pred CCCCEEEEEEECCCCCCeEEEEEEeCCCCccCC----------CC---EEEEeCCCcEEEEEEEEEcCCCcEEEEEEEE
Confidence 37889999988765 345588998754321110 01 1234457788877654 5556444344443
No 487
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=40.40 E-value=97 Score=34.03 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=54.4
Q ss_pred CCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcc-------cCCcccccccccCCCcceeeecCCCCCccEE
Q psy11701 507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK-------VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579 (745)
Q Consensus 507 p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 579 (745)
...|++...+.+.+.|.|+.. |.-.-|.|++....... ...|...- . .+...-|. ..|.|.+.|.
T Consensus 8 vtslrI~kLsaN~v~l~WddV----G~NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg--~-T~~~~wFe-d~~~p~t~Yk 79 (1030)
T PHA02579 8 VTSLRIDKLSANQVYLTWDDV----GANFYYFVELAETRDADGELIPDDELRWINLG--Y-TANNEWFE-DKLQPNTYYK 79 (1030)
T ss_pred ccEEEhhhhccceEEEEeecc----CCceEEEEEEEeeccCCCccCCCccccceecC--c-ccchhhhh-hccCCcceEE
Confidence 467888888999999999864 45578999997543321 11122111 1 12222333 3499999999
Q ss_pred EEEEEEecCCCCCCcceeeecccCC
Q psy11701 580 IHLAGYTKAGDGAESKYLFYVPFKN 604 (745)
Q Consensus 580 ~~V~a~n~~G~g~~S~~~~~~~~~~ 604 (745)
|||+.. ..|.- +|+++...+..+
T Consensus 80 ~Rv~~~-~qGFe-~SdWv~teef~T 102 (1030)
T PHA02579 80 FRVAVA-AQGFE-QSDWVYTEEFET 102 (1030)
T ss_pred EEEEee-ccCCC-ccccEEeeceEe
Confidence 999875 45553 467765544443
No 488
>PHA03112 IL-18 binding protein; Provisional
Probab=34.13 E-value=1.9e+02 Score=24.46 Aligned_cols=26 Identities=27% Similarity=0.680 Sum_probs=20.6
Q ss_pred eCCCeEEEEEEEeec-CC-CeEEEEeCC
Q psy11701 138 AEEETVTFECKASGL-PE-PEIHWVHNG 163 (745)
Q Consensus 138 ~~G~~~~l~C~~~~~-p~-~~v~W~~~g 163 (745)
.+|+++.|+|.+-++ |. .-+.|.+++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 469999999999764 65 378999765
No 489
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=33.76 E-value=31 Score=25.01 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.2
Q ss_pred CCCCCccEEEEEEEE
Q psy11701 571 GLEPSTKYRIHLAGY 585 (745)
Q Consensus 571 ~L~p~t~Y~~~V~a~ 585 (745)
.|+||-.|.|+|.|.
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 689999999999873
No 490
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=32.91 E-value=2.2e+02 Score=30.31 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=23.0
Q ss_pred ceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcC
Q psy11701 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516 (745)
Q Consensus 461 ~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~ 516 (745)
....+.+++|+|++.|.|++.+.+ .+..+..-.++|. +...+..+++...+
T Consensus 62 ~t~~v~v~gL~p~t~Y~Y~~~~~~---~~~~s~~g~~rT~--p~~~~~~~r~a~~S 112 (453)
T PF09423_consen 62 FTVKVDVTGLQPGTRYYYRFVVDG---GGQTSPVGRFRTA--PDGDPDPFRFAFGS 112 (453)
T ss_dssp TEEEEEE-S--TT-EEEEEEEE-----TTEE---EEEE----TT-----EEEEEE-
T ss_pred eEeecccCCCCCCceEEEEEEEec---CCCCCCceEEEcC--CCCCCCceEEEEEC
Confidence 455678999999999999999932 2334455668876 21223345544433
No 491
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=32.62 E-value=1.6e+02 Score=21.00 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=21.2
Q ss_pred ceeEecCCcEEEEEEEeecCCCeeEEEECC
Q psy11701 42 KEVALRNKKVELFCIFGGTPLPQTIWSKDG 71 (745)
Q Consensus 42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~ 71 (745)
...+..|+.++|...........+.|..++
T Consensus 5 ~~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 5 PTYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CSCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CCEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 345788999999888732334489999877
No 492
>PHA02935 Hypothetical protein; Provisional
Probab=31.41 E-value=99 Score=27.27 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=46.4
Q ss_pred eEEEECCEecCCC--CCeE---------eccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCc
Q psy11701 65 TIWSKDGVPINPS--DRIS---------QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133 (745)
Q Consensus 65 v~W~~~~~~i~~~--~~~~---------~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~ 133 (745)
-.|+.+++.|... +|.+ ....-.-|.|..++-+|+|.|.-...-..|-..+.+..+.|... +.....
T Consensus 69 tswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisvkan--iidltg 146 (349)
T PHA02935 69 TSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKAN--IIDLTG 146 (349)
T ss_pred ceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEEEee--eEeccc
Confidence 3499998876532 2211 00111247788889999999987665555655555555555432 212111
Q ss_pred ee-Ee-eCCCeEEEEEEEee
Q psy11701 134 FI-NA-AEEETVTFECKASG 151 (745)
Q Consensus 134 ~~-~v-~~G~~~~l~C~~~~ 151 (745)
.. .+ +.=-.+.++|+...
T Consensus 147 rvryltrnycevkirceiks 166 (349)
T PHA02935 147 RVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred eeeeeccccEEEEEEEEEee
Confidence 11 11 12235778888754
No 493
>KOG3611|consensus
Probab=30.95 E-value=92 Score=35.03 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=38.1
Q ss_pred cEEEEEEEeecCCCeeEEEE--CC----EecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701 50 KVELFCIFGGTPLPQTIWSK--DG----VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109 (745)
Q Consensus 50 ~~~l~C~~~g~p~~~v~W~~--~~----~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (745)
+..|.|...+.-. .+.|+. .+ .++....+.... ..+-|.+..++..|.|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a-~~~w~~~~~~~~~~~~~~~~~~~~~~-~~G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQA-PVVWYHQSTKDGRKEEVRQRDVVSRT-DEGGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeecccccccc-ceeeEeeccCccccceeccCcceeec-ccCceeEEEEeeccCcccccccccC
Confidence 5788898865433 488974 22 234434444444 3334777789999999999999754
No 494
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.16 E-value=96 Score=25.65 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=21.9
Q ss_pred EEecCCCcEEEecccccCCcceeEEEEecCccc
Q psy11701 695 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYN 727 (745)
Q Consensus 695 ~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~ 727 (745)
+...++.-+..+.+|+|| .|.+.+. .+.+|.
T Consensus 70 tsit~dpv~~~f~~Lk~G-~YAvaa~-qD~nGd 100 (151)
T COG4704 70 TSITGDPVSKSFYGLKPG-KYAVAAF-QDENGD 100 (151)
T ss_pred ccccCCchhheeecCCCc-cEEEEEE-EecCCC
Confidence 344667778889999999 6988776 334443
No 495
>KOG3834|consensus
Probab=30.11 E-value=96 Score=31.54 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=49.0
Q ss_pred ceeEEEcCCceEEEEeeCCCC-CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEE
Q psy11701 509 SLEAIPLGSSAFYLKWVKPEQ-PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHL 582 (745)
Q Consensus 509 ~~~~~~~~~~~i~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 582 (745)
.+.+.+.....+...|-.|.+ -+|.+.||.|.|+.........|.... + ....-..+.+|.+++.|.+-+
T Consensus 67 kltv~n~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~--V--~p~SPaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 67 KLTVYNSKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLS--V--EPNSPAALAGLRPYTDYIVGI 137 (462)
T ss_pred EEEEEecccceeEEEEecccccccccccceEEEeccCccchhheeeeee--c--CCCCHHHhcccccccceEecc
Confidence 455555566667788888874 456799999999988665544444322 2 223467788999999999876
No 496
>PHA03112 IL-18 binding protein; Provisional
Probab=29.32 E-value=2.2e+02 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=19.5
Q ss_pred ecCCcEEEEEEEeec-CCC-eeEEEECC
Q psy11701 46 LRNKKVELFCIFGGT-PLP-QTIWSKDG 71 (745)
Q Consensus 46 ~~G~~~~l~C~~~g~-p~~-~v~W~~~~ 71 (745)
.+|+.+.|+|.+-+. |.- -+.|.+++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 459999999999655 543 57799654
No 497
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=27.96 E-value=98 Score=21.92 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=26.8
Q ss_pred EEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEE
Q psy11701 237 VLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFAR 290 (745)
Q Consensus 237 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 290 (745)
+|+|..+.. ..+.|+-|+..+.. +...++++..+ .++|+|.-.
T Consensus 2 tltC~s~~s--LPiswYcN~TRLlR-----lt~~Tlt~~~l----tcNFtCV~q 44 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLLR-----LTQQTLTVVTL----TCNFTCVGQ 44 (71)
T ss_pred ceecCCCCC--CcccEEECCceeee-----ecCCeEeeeee----eEEeeecCC
Confidence 577876443 34899999976532 23335555444 478888754
No 498
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=26.38 E-value=3.8e+02 Score=22.33 Aligned_cols=108 Identities=12% Similarity=0.024 Sum_probs=57.3
Q ss_pred eccceeEecCCcEEEEEEEeecCCCeeEE--EECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEE--eC-Ceee
Q psy11701 39 TRKKEVALRNKKVELFCIFGGTPLPQTIW--SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS--NG-VGEA 113 (745)
Q Consensus 39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W--~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~--~~-~g~~ 113 (745)
.+.......|+.+.+.-..... .-.+.. ...|..+. ...+........+.| .++.+.....+..+. .. .|+.
T Consensus 4 ~~~~~~~~~Ge~~~v~v~~~~~-~~~~~~~v~s~g~I~~-~~~~~~~~~~~~~~~-~v~~~~~P~~~v~~~~v~~~~g~~ 80 (136)
T PF07703_consen 4 STDKDSYKPGETAKVTVQSPFP-NGTFLYLVESRGKIVS-TGSVELKNGSTTFEF-PVTPDMAPNFYVLAYYVRPADGEV 80 (136)
T ss_dssp EE-SSSB-TTSEEEEEEEEESC-ESEEEEEEEETTEEEE-EEEEECTTTSSEEEE-EE-GGGTSEEEEEEEEETTCTCEE
T ss_pred EcCCCCcCCCCEEEEEEEcCCC-ccEEEEEEEECCeEEE-EEEEEecCCcEEEEE-ecchhcCCcEEEEEEEEcCCCCeE
Confidence 3445567788888887776532 112221 22333332 222332233334555 455556655444443 33 5676
Q ss_pred EEEEEEEEEEe--cCeEEecCceeEeeCCCeEEEEEEE
Q psy11701 114 KSYSIDLSVLA--APYFTVEPEFINAAEEETVTFECKA 149 (745)
Q Consensus 114 ~~~~~~l~V~~--~p~~~~~~~~~~v~~G~~~~l~C~~ 149 (745)
...++.+.|.. .-.+........+.+|+.++|.-.+
T Consensus 81 ~~~s~~i~V~~~~~~~v~l~~~~~~~~Pg~~~~~~i~~ 118 (136)
T PF07703_consen 81 VADSVWIEVEPCFELKVELTASPDEYKPGEEVTLRIKA 118 (136)
T ss_dssp EEEEEEEEBGCSGSSSEEEEESSSSBTTTSEEEEEEEE
T ss_pred EEEEEEEEecccccceEEEEEecceeCCCCEEEEEEEe
Confidence 66777777765 2234444545678899999988776
No 499
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=25.86 E-value=1.3e+02 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=21.8
Q ss_pred eEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701 181 RITIENLRKSDTGNYGCNATNSLGYV 206 (745)
Q Consensus 181 ~L~i~~v~~~d~G~Y~C~~~~~~g~~ 206 (745)
.|.|.+.+.+|+|.|.-++.-.....
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~ 150 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANK 150 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCC
Confidence 58999999999999999998654433
No 500
>COG5475 Uncharacterized small protein [Function unknown]
Probab=24.30 E-value=1.8e+02 Score=19.78 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=22.4
Q ss_pred CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701 79 RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113 (745)
Q Consensus 79 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 113 (745)
.+.+.+.+-.++|...+.+ |.|.|.-.+..|..
T Consensus 10 vV~lKsGGP~Mtvs~~ss~--Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 10 VVTLKSGGPRMTVSGYSSD--GMYECRWFDGYGVK 42 (60)
T ss_pred EEEeecCCceEEEeccccC--CeEEEEEecCCCcc
Confidence 3444455556777666554 99999998876643
Done!