RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11701
(745 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 375 bits (965), Expect = e-122
Identities = 94/382 (24%), Positives = 156/382 (40%), Gaps = 14/382 (3%)
Query: 28 QNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNY 85
P + + C GT + W+KD I P ++
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251
Query: 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF-INAAEEETVT 144
+L + V D G YTC SN G+ S S L V P F + E ++E
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 310
Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCNATNSL 203
+ECK G PE ++ W + I ++ V + + NL D+G+Y C A N+
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370
Query: 204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGG 262
G + V P + P T+ G V L C + G P +V+W +++EL +G
Sbjct: 371 GSASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 429
Query: 263 RYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
+Y I+ + I +V AD GEY C A N +G+ GS+T+K + D
Sbjct: 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIST 489
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSLTVTKSSELDSG 377
G+ + + + W + I ES+ ++ ++ +L +++ ++G
Sbjct: 490 VVGEEVQLQATIEGAEPIS--VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547
Query: 378 QYTCRAQTELDFIEAQATLTVQ 399
+YTC+ + E E ATL+V
Sbjct: 548 KYTCQIKNEAGTQECFATLSVL 569
Score = 300 bits (770), Expect = 4e-93
Identities = 87/388 (22%), Positives = 154/388 (39%), Gaps = 21/388 (5%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSD 98
K V C G+ Q W KDG + S + +L I + S
Sbjct: 109 KDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSH 168
Query: 99 QGSYTCEVSNGVGEAKSYSIDLSVL---AAPYFTVEPEFINAAEEETVTFECKASGLPEP 155
G Y C SN +G A S S L++ P+F ++P ++ A E+ TF+C +G
Sbjct: 169 VGQYNCSASNPLGTASS-SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI 227
Query: 156 EIHWVHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+I W + + I V T+ + K D G Y C A+N G + V
Sbjct: 228 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Query: 215 LAHAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD- 271
P + + V + C++ G+P+ +V W ++ E+ ++ +
Sbjct: 288 QE-PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 346
Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
L++ +++ DSG+YTC A N G+A S SL VKE +P E G C
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 406
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY--SLTVTKSSELDSGQYTCRAQTEL 387
P + W + + + + S ++ S+ + D G+Y C+A ++
Sbjct: 407 ELQGTP--PFQVSWHKDKRELR-SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 463
Query: 388 DFIEAQATLTVQVP---LEAPSNFTLIQ 412
++T++ P ++ S+ + +
Sbjct: 464 GSDTCVGSITLKAPPRFVKKLSDISTVV 491
Score = 295 bits (758), Expect = 2e-91
Identities = 90/386 (23%), Positives = 152/386 (39%), Gaps = 20/386 (5%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGS 101
A + + L C GTP + W K+ + + ++ N SL+I V+ SD G
Sbjct: 16 EAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGE 75
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIH 158
YTC+ N VG S S L + P F + + ++ V FEC+ +G ++
Sbjct: 76 YTCKAENSVGAVAS-SAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVS 134
Query: 159 WVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
W +G+ + + + I +S G Y C+A+N LG + + H
Sbjct: 135 WYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH 194
Query: 218 --APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGD--- 271
P P G++ C V G ++ W + +E+ GG Y + +
Sbjct: 195 EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 254
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRCN 330
L + V D+G+YTC+A N G S L V+E + E V+ + + C
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
P ++ ++W + I S+ R + L + S DSG YTC A
Sbjct: 315 IGGSP--EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 372
Query: 390 IEAQATLTVQVP---LEAPSNFTLIQ 412
+ +L V+ P + P ++
Sbjct: 373 ASSSTSLKVKEPPVFRKKPHPVETLK 398
Score = 240 bits (615), Expect = 1e-70
Identities = 69/278 (24%), Positives = 113/278 (40%), Gaps = 16/278 (5%)
Query: 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFS 97
+ +++ C GG+P + +W KD I S + L + ++
Sbjct: 298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 357
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
D G YTCE N G A S S L V P F +P + + V EC+ G P ++
Sbjct: 358 DSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV 416
Query: 158 HWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
W + + + + K+ I I N+ +D G Y C A+N +G +
Sbjct: 417 SWHKDKREL---RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473
Query: 214 VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE--- 268
+ A P + D TV G+ V L + GA V W ++ E+ I
Sbjct: 474 LKA-PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L+ + A++G+YTC +N+ GT + +L+V E
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 233 bits (595), Expect = 7e-68
Identities = 80/290 (27%), Positives = 117/290 (40%), Gaps = 13/290 (4%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-R 181
+ PYF E + AA E +T +CK G PE I W + AP +
Sbjct: 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLT 239
+ I + SD G Y C A NS+G V + + P KD + G V
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 240 CRVFGAPKPEVNWIHNQKEL-TGGRYTIL---ETGDLKITDVAFADSGEYTCFARNKLGT 295
CR+ G+ +V+W + + L L+I + G+Y C A N LGT
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 296 AQGSGSLTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
A S LT+ EH +P ++ G+S TF+C+ + I W + + I
Sbjct: 183 ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTA--PIKITWAKDNREIRP 240
Query: 353 ESEPRFVQSND-YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ + +LTV K ++ D+GQYTC A A L VQ P
Sbjct: 241 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 290
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 352 bits (906), Expect = e-115
Identities = 100/376 (26%), Positives = 155/376 (41%), Gaps = 23/376 (6%)
Query: 44 VALRNKKVELFCI-FGGTPLPQTIWSKDGVPI--NPSDRISQGNYGKSLIIKHVEFS--- 97
V +R V L C +P W KDG+ + DR Q G SL+I+++ S
Sbjct: 32 VTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG-SLLIQNILHSRHH 90
Query: 98 --DQGSYTCEVSNG-VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE 154
D+G Y CE S G G S + + V F + E I A +TV +C+ G P
Sbjct: 91 KPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPM 150
Query: 155 PEIHWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGY-VYKDVYV 212
P IHW N + ++ P + R V P+ + I L+ D+G Y C+A N + V
Sbjct: 151 PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210
Query: 213 NVLA-----HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYT 265
+L+ + P + ++GK VL C V G P P W+ ++ + +Y+
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS 270
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSA 325
+L +L I++V DSG YTC K S LTV + P +
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDI 330
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
F C P ++ W++ + + F +L + + D G Y C A+
Sbjct: 331 EFECAVSGKP--VPTVNWMKNGDVV--IPSDYFQIVGGSNLRILGVVKSDEGFYQCVAEN 386
Query: 386 ELDFIEAQATLTVQVP 401
E ++ A L V P
Sbjct: 387 EAGNAQSSAQLIVPKP 402
Score = 234 bits (599), Expect = 3e-70
Identities = 83/329 (25%), Positives = 125/329 (37%), Gaps = 29/329 (8%)
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKP 165
+ + + + + +F EP V C A P I W +G
Sbjct: 4 GSELESS-HHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62
Query: 166 ISQAPPNPRRKVGPN------RITIENLRKSDTGNYGCNATNSLG--YVYKDVYVNVLAH 217
++ + R++ PN I K D G Y C A+ + + V V A
Sbjct: 63 LALG-MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV-AG 120
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT----GGRYTILETGDLK 273
+ G TV+L C V G P P ++W NQ++L R +L +G L+
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 274 ITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKE------HTHITDQPEDYEVEAGQSAT 326
I+ + DSG Y C ARN T G + + + +P + G+ A
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240
Query: 327 FRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTE 386
C P S WLRG E I S ++ +L ++ ++ DSG YTC +
Sbjct: 241 LECCVSGYP--PPSFTWLRGEEVIQLRS-KKYSLLGGSNLLISNVTDDDSGTYTCVVTYK 297
Query: 387 LDFIEAQATLTVQVP---LEAPSNFTLIQ 412
+ I A A LTV VP L PSN +
Sbjct: 298 NENISASAELTVLVPPWFLNHPSNLYAYE 326
Score = 165 bits (418), Expect = 9e-45
Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 10/211 (4%)
Query: 9 YKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWS 68
+ GN + +++ Q + V A+ K L C G P P W
Sbjct: 202 TRTGNEAEVRILSDPGLHRQLYFLQRPSNVI-----AIEGKDAVLECCVSGYPPPSFTWL 256
Query: 69 KDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYF 128
+ I + G +L+I +V D G+YTC V+ S S +L+VL P+F
Sbjct: 257 RGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI-SASAELTVLVPPWF 315
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENL 187
P + A E + FEC SG P P ++W+ NG + P+ ++ + I +
Sbjct: 316 LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV---IPSDYFQIVGGSNLRILGV 372
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
KSD G Y C A N G + V A
Sbjct: 373 VKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 343 bits (880), Expect = e-106
Identities = 105/480 (21%), Positives = 165/480 (34%), Gaps = 47/480 (9%)
Query: 7 SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
E ++ VI IS + + + + L C G P+P
Sbjct: 225 GETRLSATKGRLVITEPIS---SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR 281
Query: 67 WSKDGVPINPSDRISQG----NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
W K + +LIIK D G Y C V+N VG S L+V
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTV 340
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
A ++P F C+ +G P + W+ +GK I + +
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH---------SESVL 391
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLTC 240
IE+++K D G Y C N + + P I +A ++E G +V L C
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKC 451
Query: 241 RVFGAPKPEVNWIHNQKEL-TGGRYTILE--------TGDLKITDVAFADSGEYTCFARN 291
G P PE++W + K++ RY + + L IT V D G Y C A++
Sbjct: 452 VAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511
Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
K+G A+ S L V +I Q E + AG++ C P SIVW R + +
Sbjct: 512 KVGVAEHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYP--IDSIVWERDNRALP 568
Query: 352 FESEPRFVQSNDYSLTVTKSSEL-DSGQYTCRAQTEL-DFIEAQATLTVQV-PLEAPSNF 408
+ + +L + D YTC A+ + + V V P P F
Sbjct: 569 INR--KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAF 626
Query: 409 TLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE---GSIRELIVNKGESTTT 465
+ + + G + WT DG+ + G +
Sbjct: 627 EEGPAQVGQYLTLHCSV------PGGDLPLNI-DWT-LDGQAISEDLGITTSRVGRRGSV 678
Score = 299 bits (768), Expect = 2e-90
Identities = 99/382 (25%), Positives = 149/382 (39%), Gaps = 28/382 (7%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-------SLIIKH 93
++E V L C+ GG P P+ W DG I +DR G Y L I
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITS 496
Query: 94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP 153
V +D G Y C + VG A +S L+V PY + E ET+ C +G P
Sbjct: 497 VHANDGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYP 554
Query: 154 EPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENL-RKSDTGNYGCNATNSLGYVYK-DV 210
I W + + + P N ++KV PN + IEN+ R SD Y C A N GY + +
Sbjct: 555 IDSIVWERDNRAL---PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSL 611
Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGG-----RY 264
V V+ I A ++ G+ + L C V G P ++W + + ++
Sbjct: 612 EVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR 671
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
L I V + +G +TC ARN G Q + L V +P D G
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSD 731
Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP----RFVQSNDYSLTVTKSSELDSGQYT 380
A C A P K + W + E + ++ + +L V + + G Y
Sbjct: 732 AKVECKADGFP--KPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYL 789
Query: 381 CRAQTELDFIEAQAT-LTVQVP 401
C A + + ++VQ
Sbjct: 790 CEAINGIGSGLSAVIMISVQAH 811
Score = 255 bits (653), Expect = 4e-74
Identities = 73/393 (18%), Positives = 130/393 (33%), Gaps = 41/393 (10%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSD---- 98
+ E+ C G P+P+ IW + DG + + Q + L+ D
Sbjct: 50 DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 109
Query: 99 --QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA---SGLP 153
Y C N G S + + + A Y+ + + + +C
Sbjct: 110 VHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 169
Query: 154 EPEIHWVHNGKPI--SQAPPNPRRKVGPN-RITIENLRKSDT-GNYGCNATNSLGYVYKD 209
+ W + + A + + V P+ + I + D +Y C + L +
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 229
Query: 210 --------VYVNVLAHAPEITEAPKDEYTV--DGKTVVLTCRVFGAPKPEVNWIHNQKEL 259
+ + + P++ K + T+ L C G P P W +
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGT 289
Query: 260 TGGRYTILET------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ 313
T + +L G L I D DSG+Y C N +G LTV
Sbjct: 290 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID 349
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
P V+ G+ A F C +P ++ W++ + I ++ L + +
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNP--IKTVSWMKDGKAI---------GHSESVLRIESVKK 398
Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
D G Y C + + + EA A L + + P
Sbjct: 399 EDKGMYQCFVRNDRESAEASAELKLGGRFDPPV 431
Score = 215 bits (550), Expect = 7e-60
Identities = 65/348 (18%), Positives = 110/348 (31%), Gaps = 34/348 (9%)
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVEPE-FINAAEEETVTFE 146
+ + + + G + + + P F EP I+ + E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 147 CKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDT------GNYGCNAT 200
CKASG P PEI W+ + P R+ ++ R D Y C A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV---FGAPKPEVNWIHNQK 257
N G + A E+ + G + V+ C + V+W +++
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180
Query: 258 EL------TGGRYTILETGDLKITDVAFADS-GEYTCFARNKLGTAQGSGS---LTVKEH 307
E G+Y +L +G+L I +V D Y C +++L + V
Sbjct: 181 ENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240
Query: 308 THITDQP--------EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF- 358
+ P + + C A P W + E +
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYP--VPVFRWYKFIEGTTRKQAVVLN 298
Query: 359 --VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEA 404
V+ +L + + DSG+Y C + + LTV PL A
Sbjct: 299 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346
Score = 144 bits (365), Expect = 5e-36
Identities = 43/253 (16%), Positives = 74/253 (29%), Gaps = 17/253 (6%)
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA-HAPEITEAPKDEYTVD-GKTVVLTC 240
+ N R + A + G P + P + + C
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61
Query: 241 RVFGAPKPEVNWIHNQKELTG---GRYTILETGDLKITDV------AFADSGEYTCFARN 291
+ G P PE+ WI + G G I G L + Y C ARN
Sbjct: 62 KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARN 121
Query: 292 KLGTAQGSG-SLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEP 349
+ G+ + + V G SA +C S + W E
Sbjct: 122 QFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEE 181
Query: 350 IDF---ESEPRFVQSNDYSLTVTKSSELDS-GQYTCRAQTELDFIEAQATLTVQVPLEAP 405
F E + +++ L + + D Y CR + L + ++ + P
Sbjct: 182 NYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP 241
Query: 406 SNFTLIQVIDAKK 418
+ + +V+ K
Sbjct: 242 ISSAVPKVVSLAK 254
Score = 70.3 bits (172), Expect = 1e-12
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN-----YGKSLIIKHVEFSD 98
+ ++ C G P PQ W K + + + +L + +++ ++
Sbjct: 725 AFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784
Query: 99 QGSYTCEVSNGVGEAKSYSIDLSVLAAPYF 128
+G Y CE NG+G S I +SV A +
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMISVQAHHHH 814
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 296 bits (759), Expect = 1e-90
Identities = 67/382 (17%), Positives = 124/382 (32%), Gaps = 31/382 (8%)
Query: 28 QNRHAPKQQYVTRKKEVALRNKK-VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG 86
P + ++T + ++ V L C +W + + S R+ N
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDN 341
Query: 87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTF 145
++L + V +D G Y C + N + S + L+VL P T+ P + ++
Sbjct: 342 RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSL 401
Query: 146 ECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY 205
C A+ P + W+ +G + I N+ + ++G Y C A NS
Sbjct: 402 SCHAASNPPAQYSWLIDGNIQQHT----------QELFISNITEKNSGLYTCQANNSASG 451
Query: 206 VYKDVYVNVLAHA---PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG 262
+ + A + + D V TC + W++ Q
Sbjct: 452 HSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSP 511
Query: 263 RYTIL-ETGDLKITDVAFADSGEYTCFARNKLGTAQGSG-SLTVKEH-THITDQPEDYEV 319
R + L + +V D+ Y C +N + + +L V P D
Sbjct: 512 RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSY 571
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQY 379
+G + C++ S+PS W P L + K + ++G Y
Sbjct: 572 LSGANLNLSCHSASNPS--PQYSWRINGIPQQHTQ----------VLFIAKITPNNNGTY 619
Query: 380 TCRAQTELDFIEAQATLTVQVP 401
C ++ V
Sbjct: 620 ACFVSNLATGRNNSIVKSITVS 641
Score = 255 bits (652), Expect = 3e-75
Identities = 84/386 (21%), Positives = 132/386 (34%), Gaps = 30/386 (7%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI 90
PK + + V C +W + + S R+ N ++L
Sbjct: 109 ELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLT 167
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP-YFTVEPEFINAAEEETVTFECKA 149
+ +V +D SY CE N V +S S+ L+VL P T+ P + E + C A
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA 227
Query: 150 SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD 209
+ P + W NG + I N+ +++G+Y C A NS + +
Sbjct: 228 ASNPPAQYSWFVNGTFQQSTQ----------ELFIPNITVNNSGSYTCQAHNSDTGLNRT 277
Query: 210 --VYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTI 266
+ V A P+ + V D V LTC + W++NQ R +
Sbjct: 278 TVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQL 337
Query: 267 LETGD-LKITDVAFADSGEYTCFARNKLGTAQGSG-SLTVKEH-THITDQPEDYEVEAGQ 323
L + V D G Y C +N+L L V T P G
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397
Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
+ + C+A S+P WL + L ++ +E +SG YTC+A
Sbjct: 398 NLSLSCHAASNP--PAQYSWLIDGNIQ----------QHTQELFISNITEKNSGLYTCQA 445
Query: 384 QTELDFIEAQATLTVQVPLEAPSNFT 409
T+ V E P
Sbjct: 446 NNSASGHSRTTVKTITVSAELPKPSI 471
Score = 218 bits (556), Expect = 8e-62
Identities = 72/386 (18%), Positives = 122/386 (31%), Gaps = 45/386 (11%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPIN-------------------PSDRISQGNY 85
K+V L L W K S R
Sbjct: 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA--PYFTVEPEFINAAEEETV 143
SL+I+++ +D G YT V + + V +++ V
Sbjct: 71 A-SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAV 129
Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--ITIENLRKSDTGNYGCNATN 201
F C+ W N + + P +PR ++ +T+ N+ ++DT +Y C N
Sbjct: 130 AFTCEPETQD-ATYLWWVNNQSL---PVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQN 185
Query: 202 SLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
+ D V +NVL T +P + G+ + L+C P + +W N
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ 245
Query: 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH----ITDQPED 316
T +L I ++ +SG YTC A N + T+ +
Sbjct: 246 -------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNS 298
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS 376
VE + C + +W ++ + + N +LT+ + D
Sbjct: 299 NPVEDEDAVALTCEPEIQN---TTYLWWVNNQSLPVSPRLQLSNDNR-TLTLLSVTRNDV 354
Query: 377 GQYTCRAQTELDFIEAQ-ATLTVQVP 401
G Y C Q EL + L V
Sbjct: 355 GPYECGIQNELSVDHSDPVILNVLYG 380
Score = 159 bits (403), Expect = 3e-41
Identities = 56/301 (18%), Positives = 94/301 (31%), Gaps = 36/301 (11%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW----------------VHNGKPISQAPP 171
T+E N AE + V W + +
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61
Query: 172 NPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYK-DVYVNVLAHAPEITEAPKDEY 229
+ R + PN + I+N+ ++DTG Y + S + V P+ + + +
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSK 121
Query: 230 TVD-GKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFADSGEYT 286
V+ V TC W N + L + L + +V D+ Y
Sbjct: 122 PVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYK 180
Query: 287 CFARNKLGTAQGSG-SLTVKEH-THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
C +N + + L V T P + +G++ C+A S+P W
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNP--PAQYSWF 238
Query: 345 RGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEA 404
F QS L + + +SG YTC+A + T+ V E
Sbjct: 239 VNG---------TFQQSTQ-ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288
Query: 405 P 405
P
Sbjct: 289 P 289
Score = 112 bits (281), Expect = 8e-26
Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 28/210 (13%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT------------------- 260
++T +GK V+L +W ++
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 261 -GGRYTILETGDLKITDVAFADSGEYTCFARNKL-GTAQGSGSLTVKEHT--HITDQPED 316
GR I L I ++ D+G YT + +G V
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS 376
VE + F C + + +W ++ + + N +LT+ + D+
Sbjct: 121 KPVEDKDAVAFTCEPETQD---ATYLWWVNNQSLPVSPRLQLSNGN-RTLTLFNVTRNDT 176
Query: 377 GQYTCRAQTELDFIE-AQATLTVQVPLEAP 405
Y C Q + L V +AP
Sbjct: 177 ASYKCETQNPVSARRSDSVILNVLYGPDAP 206
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 286 bits (734), Expect = 9e-90
Identities = 62/402 (15%), Positives = 123/402 (30%), Gaps = 26/402 (6%)
Query: 12 GNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG 71
+ +++ + + + Y EV + + L + +W
Sbjct: 28 SSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD-VSASITLQVLVDAPGNISCLWVFKH 86
Query: 72 VPINPSDRI-SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV 130
+N Q S++I + + G Y + + + +S+ +T+
Sbjct: 87 SSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTL 145
Query: 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS 190
+ E + C + +PEP + WV V + L +
Sbjct: 146 RRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGT 204
Query: 191 DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR-VFGAPKPE 249
D C A N LG ++ L + G+ + + C+ V
Sbjct: 205 D---IRCCARNELGRECTRLFTIDLN--QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFG 259
Query: 250 VNWIHNQKELTGGRY----------TILETGDLKITDVAFADSGEYTCFARNKLGTAQGS 299
+ W K L G Y T++ ++ VA D+G YTC + S
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---S 316
Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
+T+ E I + E Q F + ++ W + E +
Sbjct: 317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE---QKG 373
Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
N YS++ + + G+Y A+ + TL ++
Sbjct: 374 LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 191 bits (487), Expect = 3e-54
Identities = 41/322 (12%), Positives = 90/322 (27%), Gaps = 27/322 (8%)
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS 150
SY + L + E + ++T +
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLG----CALRP-QSSGTVYEAAAVEVDVSASITLQVLVD 73
Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210
WV ++ P + G + I + ++ G Y +
Sbjct: 74 APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133
Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTIL 267
V++ T + L C P+P V W+ + ++
Sbjct: 134 TVSIRN-TLLYTLRRPY-FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVV 191
Query: 268 ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF 327
+ + + ++ + C ARN+LG + T+ + ++ G+
Sbjct: 192 KKEEKVLHEL---FGTDIRCCARNELGREC-TRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Query: 328 RCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSND-------YSLTVTKSSELDSGQY 379
RC AV + + W ++ ++ + + V+ + D+G Y
Sbjct: 248 RCKAVHVNH--GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Query: 380 TCRAQTELDFIEAQATLTVQVP 401
TC + A +T+
Sbjct: 306 TCSSSKH---PSQSALVTIVEK 324
Score = 189 bits (480), Expect = 3e-53
Identities = 43/292 (14%), Positives = 80/292 (27%), Gaps = 20/292 (6%)
Query: 34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIK 92
Y R+ + L CI P P W S K ++
Sbjct: 140 TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH 199
Query: 93 HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SG 151
+ +D C N +G + ++ + E + CKA
Sbjct: 200 ELFGTD---IRCCARNELGRE--CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHV 254
Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-------TIENLRKSDTGNYGCNATNSLG 204
+ W K + + NR + ++ ++DTG Y C+++
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314
Query: 205 YVYKDVYVNVLAHAPEITEAPKDE-YTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGG 262
V ++ I E Y +D + + R P+ W ++K
Sbjct: 315 QS---ALVTIV-EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370
Query: 263 RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
+ + + GEY A N +L ++ T
Sbjct: 371 QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHHH 422
Score = 87.8 bits (217), Expect = 1e-18
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 10/155 (6%)
Query: 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVE 320
+ + K D + S Y + + +L + + + EV+
Sbjct: 7 LPVIKCVLI-NHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQS-SGTVYEAAAVEVD 61
Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
S T + + +S +W+ ++ + S+ + K +E +G+Y
Sbjct: 62 VSASITLQVLVDAPG--NISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYL 119
Query: 381 CRAQTELDFIEAQATLTVQVPL---EAPSNFTLIQ 412
Q+E T++++ L F ++
Sbjct: 120 LFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME 154
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 281 bits (720), Expect = 3e-89
Identities = 84/302 (27%), Positives = 125/302 (41%), Gaps = 18/302 (5%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS---QGNYGK 87
P + K ++ + C G P P+ W+K G +N + + G
Sbjct: 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 88 SLIIKHVEF-SDQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAE 139
L I+ + D+ Y C N VGE L+VL P + P+
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCN 198
T T C ASG P+PEI W + P+ + N R K + + IE+ ++D G Y C
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 199 ATNSLGYVYK---DVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN 255
ATNS G Y ++YV V AP + P + G V +TC G+P P V W+
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242
Query: 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
++LT + L++TDV DS YTC A + LG + +TVK +
Sbjct: 243 AEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHH 300
Query: 316 DY 317
+
Sbjct: 301 HH 302
Score = 249 bits (638), Expect = 4e-77
Identities = 76/304 (25%), Positives = 119/304 (39%), Gaps = 24/304 (7%)
Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
+ P F EP+ +F C+A+G P+P + W GK ++
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 181 RIT--IENLR-KSDTGNYGCNATNSLGYVYKDVYVNVLA------HAPEITEAPKDEYTV 231
I+ LR D Y C A NS+G + + VL P I P+ +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKEL----TGGRYTILETGDLKITDVAFADSGEYTC 287
+T + C G P PE+ W + + + GR L +G L+I D G+Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 288 FARNKLGTAQ-GSGSLTVKEHT---HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
A N G +L V+ + P +E+ G + C AV P + W
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSP--MPYVKW 239
Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
++G+E + + + L +T DS YTC A + L IEA A +TV+ +
Sbjct: 240 MQGAEDL---TPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLPK 294
Query: 404 APSN 407
A +
Sbjct: 295 AGTK 298
Score = 71.4 bits (175), Expect = 1e-13
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPR--FVQ 360
T +E +P+D +G A+F C A DP K + W + + ++ + F +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDP--KPRVTWNKKGKKVNSQRFETIEFDE 59
Query: 361 SNDYSLTVTK-SSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNF 408
S L + + D Y C AQ + I A LTV + PS F
Sbjct: 60 SAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF 108
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 278 bits (712), Expect = 3e-88
Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 7/277 (2%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ C G P ++ G I + R + + L I + D G
Sbjct: 15 ELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 74
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH 161
Y C+ ++ G+ + ++ L + F + E C+ S P P + W++
Sbjct: 75 YRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 134
Query: 162 NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN-SLGYVYKDVYVNVLAHAPE 220
+ + ++ N + N + I N+ KSD G Y C + G + + ++ P
Sbjct: 135 HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA 194
Query: 221 IT--EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILE-TGDLKITD 276
I+ + + G+ + +CR G+P+P ++W N K + +Y + +L + +
Sbjct: 195 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRN 254
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ 313
+ +D G Y C A NK G + L V H
Sbjct: 255 IINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHHH 291
Score = 231 bits (590), Expect = 3e-70
Identities = 74/291 (25%), Positives = 120/291 (41%), Gaps = 19/291 (6%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-- 180
+A T+ + + E+ F C A G PE + G+ I R V
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKI---ISTQRVVVQKEGV 58
Query: 181 --RITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
R+TI N D G Y C AT++ G V + + E + G+
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAE 117
Query: 238 LTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
+ CRV +P P V+W+++ +E+T R+ +L +L+I ++ +D G Y C R +
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177
Query: 295 TAQGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI 350
+ V + + + + E G+ TF C A P + +I W R + I
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP--EPAISWFRNGKLI 235
Query: 351 DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ E+E ++ ++ LTV D G Y CRA + E QA L V V
Sbjct: 236 E-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 277 bits (709), Expect = 3e-86
Identities = 84/379 (22%), Positives = 145/379 (38%), Gaps = 27/379 (7%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEF----S 97
+ + + C G P P W+++ N + R+S +L+I
Sbjct: 28 IVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE 87
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKA-SGLPEP 155
+G Y C N G A S I L V +P + E + + E +T +C GLP P
Sbjct: 88 YEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP 147
Query: 156 EIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDT-GNYGCNATNSLGYVYKD---V 210
I W+ + + R G N + N+ D +Y CNA + +
Sbjct: 148 VIFWMSSSMEPI--TQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 205
Query: 211 YVNVLAHAPEITEAPK---------DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG 261
+ VL P + + G ++L C G P P++ W +L
Sbjct: 206 TLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS 265
Query: 262 GRYTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVE 320
+ L+IT+V+ DSGEY C A NK+G+ + + S+ VK + D+P++ +
Sbjct: 266 DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILA 325
Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
G+ C A +P K ++ W+ EP+ + ++ + Y
Sbjct: 326 PGEDGRLVCRANGNP--KPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQ 383
Query: 381 CRAQTELDFIEAQATLTVQ 399
C E ++ A A ++V
Sbjct: 384 CNTSNEHGYLLANAFVSVL 402
Score = 210 bits (535), Expect = 5e-61
Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 3/209 (1%)
Query: 7 SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
+ N L V+ T A + + T ++ LR + L CI G P P
Sbjct: 197 HTIQQKNPFTLKVLTTRGVA-ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIA 255
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
W K G + PSD+ N+ K+L I +V D G Y C SN +G ++I + V AAP
Sbjct: 256 WYKKGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAAP 313
Query: 127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
Y+ EP+ + A E C+A+G P+P + W+ NG+P+ APPNP R+V + I +
Sbjct: 314 YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRD 373
Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ S Y CN +N GY+ + +V+VL
Sbjct: 374 TQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 209 bits (533), Expect = 9e-61
Identities = 70/287 (24%), Positives = 103/287 (35%), Gaps = 24/287 (8%)
Query: 39 TRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEF 96
V + L C G P P W + D R+SQG+ G L +V
Sbjct: 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG-DLYFSNVML 180
Query: 97 SD-QGSYTCEVSNGVGEAKSYS--IDLSVL-------AAPYFTV---EPEFINAAEEETV 143
D Q Y+C L VL P F +
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCNATNS 202
EC ASG+P P+I W G + P + + N+ I N+ + D+G Y C A+N
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDL---PSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297
Query: 203 LGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-- 260
+G + + V V A AP + PK+ G+ L CR G PKP V W+ N + L
Sbjct: 298 MGSIRHTISVRVKA-APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSA 356
Query: 261 -GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ + D + Y C N+ G + ++V +
Sbjct: 357 PPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 201 bits (512), Expect = 8e-58
Identities = 69/325 (21%), Positives = 113/325 (34%), Gaps = 33/325 (10%)
Query: 116 YSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR 174
SI + P T + + + + EC+A G P P HW N + + A +PR
Sbjct: 7 PSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIA-KDPR 65
Query: 175 RKVGPN------RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDE 228
+ + G Y C A N G + ++ +P + D
Sbjct: 66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDP 125
Query: 229 YTVD-GKTVVLTCRVF-GAPKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFADS-G 283
V G + L C G P P + W+ + E R + GDL ++V D
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQT 185
Query: 284 EYTCFARNKLGTAQGSG---SLTVKEHTHITDQ----------PEDYEVEAGQSATFRCN 330
+Y+C AR +L V + ++ V G C
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
A P I W + + S+ ++ + +L +T SE DSG+Y C A ++ I
Sbjct: 246 ASGVP--TPDIAWYKKGGDL--PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301
Query: 391 EAQATLTVQVP---LEAPSNFTLIQ 412
++ V+ L+ P N L
Sbjct: 302 RHTISVRVKAAPYWLDEPKNLILAP 326
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 281 bits (719), Expect = 3e-86
Identities = 72/464 (15%), Positives = 144/464 (31%), Gaps = 38/464 (8%)
Query: 23 GISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI-S 81
+ + + Y EV + + + L + +W +N
Sbjct: 39 DLGCALRPQSSGTVYEAAAVEVDV-SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL 97
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
Q S++I + + G Y + + + +S+ +T+ + E +
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRRPYFRKMENQ 156
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
C + +PEP + WV V + + L + + C A N
Sbjct: 157 D-ALVCISESVPEPIVEWVLCDSQGESCKEESPAVV---KKEEKVLHELFGTDIRCCARN 212
Query: 202 SLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELT 260
LG ++ L P+ T + G+ + + C+ + W K L
Sbjct: 213 ELGRECTRLFTIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE 270
Query: 261 ----------GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI 310
T++ ++ VA D+G YTC + S +T+ E I
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFI 327
Query: 311 --TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
T+ EDYE++ + F + P ++ W + E + N YS++
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYP--QIRCTWTFSRKSFPCEQK---GLDNGYSISK 382
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVP---LEAPSNFTLI-QVIDAKKAVVSWN 424
+ + G+Y A+ + TL ++ L S +W
Sbjct: 383 FCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWK 442
Query: 425 PVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVD 468
S +S + T + + + + ST +
Sbjct: 443 KCSDKSP----NCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE 482
Score = 236 bits (602), Expect = 2e-69
Identities = 55/386 (14%), Positives = 106/386 (27%), Gaps = 38/386 (9%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFS 97
R+ + L CI P P W S K + H
Sbjct: 144 TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE--L 201
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEPE 156
C N +G + + + P T+ F+ E + CKA +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL--KVGEPLWIRCKAVHVNHGFG 259
Query: 157 IHWVHNGKPISQAPPNPRRKVGPNRI-------TIENLRKSDTGNYGCNATNSLGYVYKD 209
+ W K + + NR + ++ ++DTG Y C+++ +
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QS 316
Query: 210 VYVNVLAHA-PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE 268
V ++ T + +D + + R P+ W ++K + +
Sbjct: 317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376
Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328
+ GEY A N +L ++ + + ++
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--------LAEASASQAS 428
Query: 329 CNAVSDPSLKLSIVWLRGSEP------------IDFESEPRFVQSNDYSLTVTKSSELDS 376
C + P S W + S+ + ++ + S T+ S +
Sbjct: 429 CFSDGYP--LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKG 486
Query: 377 GQYTCRAQTELDFIEAQATLTVQVPL 402
C A L L P
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGPF 512
Score = 192 bits (488), Expect = 2e-53
Identities = 45/328 (13%), Positives = 82/328 (25%), Gaps = 42/328 (12%)
Query: 18 NVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINP 76
N + + + T + + + + C W + +
Sbjct: 212 NELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271
Query: 77 SDRISQGNYGK--------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYF 128
+ Y + V +D G YTC S + S ++++ +
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFI 327
Query: 129 --TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
T E + E F + P+ W + K P + I+
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF---PCEQKGLDNGYSISKFC 384
Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAP 246
K G Y +A N K +N+ P++ +C G P
Sbjct: 385 NHKHQPGEYIFHAENDDAQFTKMFTLNIRR-KPQVLAE--------ASASQASCFSDGYP 435
Query: 247 KPEVNW-------IHNQKELTGGRYTILE--------TGDLKITDVAFADSGEYTCFARN 291
P W + +E+T G + + C A N
Sbjct: 436 LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYN 495
Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEV 319
LGT+ + L
Sbjct: 496 SLGTSCETILLNSPGPFPFIQDGGTKHH 523
Score = 183 bits (466), Expect = 3e-50
Identities = 40/333 (12%), Positives = 92/333 (27%), Gaps = 21/333 (6%)
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS 150
SY + + L ++ E + ++T +
Sbjct: 19 NNDSSVGKSSSYPMVSES----PEDLGCALRPQSSG-TVYEAAAVEVDVSASITLQVLVD 73
Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210
WV ++ P + G + I + ++ G Y +
Sbjct: 74 APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133
Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG 270
V++ + + + L C P+P V W+ + +
Sbjct: 134 TVSI--RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVV 191
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
+ + + C ARN+LG + T+ + ++ G+ RC
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGREC-TRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCK 250
Query: 331 AVSDPSLKLSIVWLRGSEPID-------FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
A + + W ++ ++ V+ + D+G YTC +
Sbjct: 251 A-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSS 309
Query: 384 QTELDFIEAQATLTVQVP--LEAPSNFTLIQVI 414
A +T+ + A ++ ++
Sbjct: 310 SKH---PSQSALVTIVEKGFINATNSSEDYEID 339
Score = 81.7 bits (201), Expect = 2e-16
Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 7/160 (4%)
Query: 262 GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA 321
+ + K D + S Y + + + G + + + EV+
Sbjct: 8 PVIKCVLI-NHKNNDSSVGKSSSYPMVSES----PEDLGCALRPQSSGTVYEAAAVEVDV 62
Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC 381
S T + + +S +W+ ++ + S+ + K +E +G+Y
Sbjct: 63 SASITLQVLVDAPG--NISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120
Query: 382 RAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV 421
Q+E T++++ L + ++ + A+V
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALV 160
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 271 bits (696), Expect = 8e-86
Identities = 63/284 (22%), Positives = 118/284 (41%), Gaps = 10/284 (3%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-R 181
+A P+F ++P ++ A E+ TF+C +G +I W + + I V
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTC 240
+T+ + K D G Y C A+N G + V P + + V + C
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 241 RVFGAPKPEVNWIHNQKELT-GGRYTIL---ETGDLKITDVAFADSGEYTCFARNKLGTA 296
++ G+P+ +V W ++ E+ ++ + L++ +++ DSG+YTC A N G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
S SL VKE +P E G C P + W + + +
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP--PFQVSWHKDKRELRSGKKY 239
Query: 357 RFVQSND-YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ + N S+ + D G+Y C+A ++ ++T++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 265 bits (679), Expect = 2e-83
Identities = 76/270 (28%), Positives = 115/270 (42%), Gaps = 10/270 (3%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ C GT + W+KD I P ++ +L + V D G
Sbjct: 16 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 75
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF-INAAEEETVTFECKASGLPEPEIHWV 160
YTC SN G+ S S L V P F + E ++E +ECK G PE ++ W
Sbjct: 76 YTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134
Query: 161 HNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
+ I ++ V + + NL D+G+Y C A N+ G + V P
Sbjct: 135 KDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PP 193
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKIT 275
+ P T+ G V L C + G P +V+W +++EL G +Y I+ + I
Sbjct: 194 VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL 253
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
+V AD GEY C A N +G+ GS+T+K
Sbjct: 254 NVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 166 bits (421), Expect = 2e-46
Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 11/201 (5%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
P P G++ C V G ++ W + +E+ GG Y + + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPED-YEVEAGQSATFRCNAV 332
+ V D+G+YTC+A N G S L V+E + E V+ + + C
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 333 SDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
P ++ ++W + I S+ R + L + S DSG YTC A
Sbjct: 125 GSP--EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182
Query: 392 AQATLTVQVP---LEAPSNFT 409
+ +L V+ P + P
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVE 203
Score = 162 bits (411), Expect = 5e-45
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 10/183 (5%)
Query: 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFS 97
+ +++ C GG+P + +W KD I S + +S L + ++
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
D G YTCE N G A S S L V P F +P + + V EC+ G P ++
Sbjct: 166 DSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV 224
Query: 158 HWVHNGKPISQAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
W + + + + K+ I I N+ +D G Y C A+N +G +
Sbjct: 225 SWHKDKREL---RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281
Query: 214 VLA 216
+ A
Sbjct: 282 LKA 284
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 269 bits (689), Expect = 1e-83
Identities = 95/368 (25%), Positives = 132/368 (35%), Gaps = 24/368 (6%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEFSDQGSYTCE 105
+KV L C P W +G + R G +I V+ D GSY C
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSYQCV 80
Query: 106 VSNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKA-SGLPEPEIHWVHNG 163
+N G S L F+ E + + E V F C P W+ N
Sbjct: 81 ATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNE 140
Query: 164 KPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYV---------- 212
P R + I SD GNY C AT+ + ++ K V+
Sbjct: 141 FPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
Query: 213 -NVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD 271
+ P D Y + G+ V L C FG P P++ W T +
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW--LSSEPL 258
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
L I +V F D G Y C A N G G + + D D E + G + C A
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318
Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
P + ++ WLR +P+ S+ R S L +K DSG Y C A+ + +
Sbjct: 319 SGKP--RPAVRWLRDGQPL--ASQNRIEVSGG-ELRFSKLVLEDSGMYQCVAENKHGTVY 373
Query: 392 AQATLTVQ 399
A A LTVQ
Sbjct: 374 ASAELTVQ 381
Score = 207 bits (528), Expect = 2e-60
Identities = 68/282 (24%), Positives = 98/282 (34%), Gaps = 22/282 (7%)
Query: 39 TRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINP---SDRISQGNYGKSLIIKHV 94
R V C P W + P R G +L I
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-NLYIAKT 165
Query: 95 EFSDQGSYTCEVSNGVGEA----KSYSIDLSVL-------AAPYFTVEPEFINAAEEETV 143
E SD G+Y+C ++ + S LS+ A P A + V
Sbjct: 166 EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMV 225
Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203
T EC A G P P+I W + + I+N+ D G Y C A N
Sbjct: 226 TLECFAFGNPVPQIKWRKLD-----GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK 280
Query: 204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR 263
G + + A P+ + D G + +C G P+P V W+ + + L
Sbjct: 281 GRDTYQGRIIIHA-QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN 339
Query: 264 YTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
+ G+L+ + + DSG Y C A NK GT S LTV+
Sbjct: 340 RIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 205 bits (523), Expect = 1e-59
Identities = 68/312 (21%), Positives = 109/312 (34%), Gaps = 35/312 (11%)
Query: 125 APYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
P F +P F + EE VT C+A P W NG + P+ R ++
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG-PDSRYRLVAGD 62
Query: 182 ITIEN-LRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVD-GKTVVL 238
+ I N ++ D G+Y C ATN+ G V ++ + E + +D + G V+
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRF-GFLQEFSAEERDPVKITEGWGVMF 121
Query: 239 TCRV-FGAPKPEVNWIHNQKEL----TGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
TC P W+ N+ G R+ TG+L I +D G Y+CFA + +
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHI 181
Query: 294 GTAQGSGSLTVKEHTHITD------------QPEDYEVEAGQSATFRCNAVSDPSLKLSI 341
S + + + P D GQ T C A +P I
Sbjct: 182 DFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNP--VPQI 239
Query: 342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
W + S++ L + D G Y C A+ Q + +
Sbjct: 240 KWRKLDGSQ-----TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ 294
Query: 402 ---LEAPSNFTL 410
L+ ++
Sbjct: 295 PDWLDVITDTEA 306
Score = 198 bits (506), Expect = 3e-57
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 9/207 (4%)
Query: 11 IGNRILLNVIATGISASQNR-HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
I + ++A R +AP + AL + V L C G P+PQ W K
Sbjct: 184 ITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK 243
Query: 70 DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
+ L I++V+F D+G+Y CE N G +Y + + A P +
Sbjct: 244 LDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQGRIIIHAQPDWL 298
Query: 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
A + + C ASG P P + W+ +G+P+ R +V + L
Sbjct: 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL---ASQNRIEVSGGELRFSKLVL 355
Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLA 216
D+G Y C A N G VY + V A
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELTVQA 382
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 266 bits (682), Expect = 1e-82
Identities = 88/372 (23%), Positives = 130/372 (34%), Gaps = 24/372 (6%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGS 101
+ KKV+L C G P P W +G ++ R S + G LI + D G+
Sbjct: 19 LDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-GSLLINNPNKTQDAGT 77
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKA-SGLPEPEIHW 159
Y C +N G S L F ++ + + C E W
Sbjct: 78 YQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW 137
Query: 160 VHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
+ N P N R I + KSD GNY C TN++ L
Sbjct: 138 IFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 195
Query: 219 PE----------ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTIL 267
+ + P+ G TV L C G P P + W + K +
Sbjct: 196 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK 255
Query: 268 ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF 327
G L+I + D+G Y C A N G G LT + D V +S +
Sbjct: 256 SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFW 315
Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
C A P K + WL+ +P+ + R +L +T + D+G Y C A+ +
Sbjct: 316 ECKANGRP--KPTYRWLKNGDPL--LTRDRIQIEQG-TLNITIVNLSDAGMYQCVAENKH 370
Query: 388 DFIEAQATLTVQ 399
I + A L+V
Sbjct: 371 GVIFSSAELSVI 382
Score = 218 bits (556), Expect = 2e-64
Identities = 80/278 (28%), Positives = 108/278 (38%), Gaps = 16/278 (5%)
Query: 39 TRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFS 97
TR R + + L C + W + P +R +L I VE S
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS 167
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVL----------AAPYFTVEPEFINAAEEETVTFEC 147
D G+YTC V+N V K ++ PE + A + TV EC
Sbjct: 168 DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227
Query: 148 KASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV 206
A G P P I W +GKPI RR + I N ++ D G+Y C A NS G
Sbjct: 228 FALGNPVPTILWRRADGKPI---ARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN 284
Query: 207 YKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTI 266
+ A P + D + ++V C+ G PKP W+ N L
Sbjct: 285 VAKGQLTFYA-QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQ 343
Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+E G L IT V +D+G Y C A NK G S L+V
Sbjct: 344 IEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 212 bits (541), Expect = 3e-62
Identities = 74/311 (23%), Positives = 123/311 (39%), Gaps = 31/311 (9%)
Query: 124 AAPYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
+ P F EP F +EE+ V C+ G P+P I W NG + + R V
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-MDFRYSVVDG 62
Query: 181 RITIENL-RKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVD-GKTVV 237
+ I N + D G Y C ATNS G + ++ + A+ + +V G+ +V
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF-AYLENFKTRTRSTVSVRRGQGMV 121
Query: 238 LTCRV-FGAPKPEVNWIHNQKELT--GGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
L C + + WI N+ R+ ETG+L I V +D G YTC N +
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT 181
Query: 295 TAQGSGS---LTVKEHTHITDQ--------PEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
+ G L ++ + + PE E G + C A+ +P +I+W
Sbjct: 182 NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP--VPTILW 239
Query: 344 LR-GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP- 401
R +PI + ++ L + + D+G Y C A+ A+ LT
Sbjct: 240 RRADGKPIARK---ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP 296
Query: 402 --LEAPSNFTL 410
++ ++ +
Sbjct: 297 NWVQIINDIHV 307
Score = 201 bits (512), Expect = 5e-58
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 10/211 (4%)
Query: 7 SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
+ +G L + G+ + PK + + A + V+L C G P+P +
Sbjct: 182 NHKVLGPPTPLILRNDGVMGE---YEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTIL 238
Query: 67 WSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
W + DG PI R + N L I + + D GSY C N G+ + L+ A
Sbjct: 239 WRRADGKPIARKARRHKSN--GILEIPNFQQEDAGSYECVAENSRGKNVA-KGQLTFYAQ 295
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
P + I+ A EE+V +ECKA+G P+P W+ NG P+ R ++ + I
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL---LTRDRIQIEQGTLNIT 352
Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ SD G Y C A N G ++ ++V+A
Sbjct: 353 IVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 256 bits (656), Expect = 1e-78
Identities = 83/386 (21%), Positives = 120/386 (31%), Gaps = 39/386 (10%)
Query: 44 VALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQ 99
+ N L CI G W KDG N + + + SL+ + SD+
Sbjct: 17 LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDE 74
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK-ASGLPEPEIH 158
G Y C G A S I + E +C + P+P I
Sbjct: 75 GHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLIT 134
Query: 159 WVHNGKPISQ----APPNPRRKVGPN-RITIENLRK---SDTGNYGCNATNSLGYVYKDV 210
W + R GP+ + + K SD Y C A N+ +
Sbjct: 135 WKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 194
Query: 211 YVNVL----------AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
+ P KD G ++ C P N+ N K++
Sbjct: 195 VEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVN 254
Query: 261 G------GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQ 313
G R+ L D G YTC N +G Q S LTV +
Sbjct: 255 GNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQK 314
Query: 314 PED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
PE V+ GQ T C P ++VW ++P+ S R ++ L +
Sbjct: 315 PEKVIVVKQGQDVTIPCKVTGLP--APNVVWSHNAKPL---SGGRATVTDS-GLVIKGVK 368
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTV 398
D G Y CRA E + + V
Sbjct: 369 NGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 207 bits (527), Expect = 4e-60
Identities = 56/310 (18%), Positives = 93/310 (30%), Gaps = 30/310 (9%)
Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVG 178
L V P +P + E EC G + + W +GK + N +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
+ + SD G+Y C A G V + ++ ++G+ L
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 239 TCRV-FGAPKPEVNWIHNQKELT--------GGRYTILETGDLKITDVAFADS---GEYT 286
C + PKP + W R T G+L T V D +Y
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180
Query: 287 CFARNKLGTAQ-----------GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
C A+N + + K +D +AG C S+P
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240
Query: 336 SLKLSIVWLRGSEPIDFESEPRF---VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
+ + + ++ E R +++ L + D G YTC + +
Sbjct: 241 --MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 393 Q-ATLTVQVP 401
LTV
Sbjct: 299 HSLKLTVVSA 308
Score = 199 bits (507), Expect = 3e-57
Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 10/203 (4%)
Query: 17 LNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI-- 74
+ S + P QYV+ K +A ++C++G P+ + K+G +
Sbjct: 197 YEIKGVTKDNSGYKGEPVPQYVS-KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG 255
Query: 75 NPSDRISQGNY--GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
NP DRI++ N GK L+ K D+G YTCEV NGVG+ + +S+ L+V++AP + +P
Sbjct: 256 NPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKP 315
Query: 133 E-FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSD 191
E I + + VT CK +GLP P + W HN KP+ R V + + I+ ++ D
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL----SGGRATVTDSGLVIKGVKNGD 371
Query: 192 TGNYGCNATNSLGYVYKDVYVNV 214
G YGC ATN G Y + V V
Sbjct: 372 KGYYGCRATNEHGDKYFETLVQV 394
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 253 bits (647), Expect = 4e-78
Identities = 79/324 (24%), Positives = 129/324 (39%), Gaps = 50/324 (15%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSL 89
P + +++ V VEL C GG P+ T+W KDG + PS+R+ G + L
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP--QRL 63
Query: 90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSI--------------------DLSVLAAPYFT 129
+ + D G+Y+C +S+ APY+T
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123
Query: 130 ----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--IT 183
++ + + TV F C A+G P P I W+ NG+ K+ + +
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV 183
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE----ITEAPKDEYTVDGKTVVLT 239
+E++ SD GNY C N G + + ++VL +P P ++ V G V
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 243
Query: 240 CRVFGAPKPEVNWIHNQK-----------------ELTGGRYTILETGDLKITDVAFADS 282
C+V+ +P + W+ + + + G T E L + +V F D+
Sbjct: 244 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA 303
Query: 283 GEYTCFARNKLGTAQGSGSLTVKE 306
GEYTC A N +G + S L V
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVVLP 327
Score = 209 bits (534), Expect = 8e-62
Identities = 69/325 (21%), Positives = 105/325 (32%), Gaps = 54/325 (16%)
Query: 126 PYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
+ E + + V C G P WV +G + P+ R VGP R+ +
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL---VPSERVLVGPQRLQV 65
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA--------------------HAPEITEA 224
N D+G Y C + + A AP T
Sbjct: 66 LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125
Query: 225 PKDEYTV----DGKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTILETGDLKIT 275
+ + + TV C G P P ++W+ N +E GG + L +
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME 185
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCN 330
V +D G YTC NK G+ + + +L V E + P + G F C
Sbjct: 186 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK 245
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEP--------------RFVQSNDYSLTVTKSSELDS 376
SD + I WL+ E + P L++ + D+
Sbjct: 246 VYSDA--QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA 303
Query: 377 GQYTCRAQTELDFIEAQATLTVQVP 401
G+YTC A + F A L V
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVVLPA 328
Score = 146 bits (369), Expect = 7e-39
Identities = 51/212 (24%), Positives = 79/212 (37%), Gaps = 23/212 (10%)
Query: 34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---GKSLI 90
+ + + +K V C G P P W K+G RI SL+
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV 183
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA-----PYFTVEPEFINAAEEETVTF 145
++ V SD+G+YTC V N G + + L VL P A V F
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 242
Query: 146 ECKASGLPEPEIHWVHNGKPI-SQAPPNPRRKV-------------GPNRITIENLRKSD 191
CK +P I W+ + + S+ P+ V +++ N+ D
Sbjct: 243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED 302
Query: 192 TGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
G Y C A NS+G+ + ++ VL E+ E
Sbjct: 303 AGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
Score = 133 bits (336), Expect = 2e-34
Identities = 41/215 (19%), Positives = 65/215 (30%), Gaps = 31/215 (14%)
Query: 216 AHAPEITEAPKDEYTVD-GKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYTILETGDLK 273
A P +++ G V L+C G P W+ + L ++ L+
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQ 64
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD--------------------- 312
+ + + DSG Y+C R + D
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124
Query: 313 ----QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES--EPRFVQSNDYSL 366
+ V A + FRC A +P SI WL+ E ++ +SL
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNP--TPSISWLKNGREFRGEHRIGGIKLRHQQWSL 182
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ D G YTC + + I TL V
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 217
Score = 56.2 bits (135), Expect = 2e-08
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 4/97 (4%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
Q E +G + C VW++ + R + L V
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGP-MGPTVWVKDGTGL--VPSERVLVGP-QRLQVL 66
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+S DSG Y+CR + + + P
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD 103
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 254 bits (650), Expect = 9e-78
Identities = 91/403 (22%), Positives = 147/403 (36%), Gaps = 30/403 (7%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--------GGRYTILE-- 268
P I + K+E T + V L C G P PE+ W T GR +
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 269 -TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF 327
+ L I DV +DSG Y C A +++G Q S L ++ Y G
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120
Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVTKSSELDSGQYTCRAQ 384
C+ S+P SI W R + ++ + L + +S+ D G+Y C A
Sbjct: 121 SCDVKSNPP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 385 TELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH-FRGYKVQTW 443
+ + L + +P +I++ A VS+N P S G Y+V
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIEL-SQTTAKVSFNK--PDSHGGVPIHHYQVDV- 234
Query: 444 TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGV 503
K+ I +++ + G T ++ P + RV A NG G S+I F T
Sbjct: 235 --KEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR 292
Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
+ S+ P +F L K + ++ Y +KY + L
Sbjct: 293 EPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKY-----RSKDKEDQWLEKKVQGN 347
Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD 606
L L+ + Y + + + G + Y F +P K P+
Sbjct: 348 KDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK-PN 389
Score = 145 bits (367), Expect = 5e-38
Identities = 63/315 (20%), Positives = 105/315 (33%), Gaps = 33/315 (10%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINPSDRISQGNY-------GKS 88
+ K E N +V L C G P+P+ W + DG D+ G S
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
L IK V+ SD G Y CE ++ +G + S+ L + AP F + E + C
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQK-SMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR---ITIENLRKSDTGNYGCNATNSLGY 205
P IHW + + + R + I +D G Y C ATN +G
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Query: 206 VYKDVYVNVLA-----HAPEITEAPKDEYTV-------DGKTVVLTCRVFGAPKPEVNWI 253
+++ + + + +I E + V G + +V W
Sbjct: 184 RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW- 242
Query: 254 HNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ 313
+ + G T++ +L+ + E A N G S +
Sbjct: 243 --KIVRSHGVQTMVVLNNLEP-----NTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPS 295
Query: 314 PEDYEVEAGQSATFR 328
P + +F+
Sbjct: 296 PPSIHGQPSSGKSFK 310
Score = 142 bits (360), Expect = 4e-37
Identities = 67/387 (17%), Positives = 129/387 (33%), Gaps = 45/387 (11%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES-----EPRFVQSNDY--- 364
Q ++ T C+A +P I W R + F + R +
Sbjct: 6 QLKNETTYENGQVTLVCDAEGEP--IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 365 SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWN 424
SL + DSG+Y C A + + + L ++ + SN T+ +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN---- 119
Query: 425 PVSPQSLRGHFRGYKVQT--WTEKDGE-----GSIRELIVNKGESTTTEVDKFVPASKNF 477
+ + + W +D + + G E+
Sbjct: 120 ------ISCDVKSNPPASIHWR-RDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGR 172
Query: 478 ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMG 536
A N + VP + ++ I L + + + KP+ GV +
Sbjct: 173 YNCTATNHIGT---RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHH 229
Query: 537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY 596
Y++ + V S T L LEP+T Y I +A G G SK
Sbjct: 230 YQVDVKEVASE------IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKI 283
Query: 597 LFYV--PFK--NPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQ 652
+ P + +P ++ G+ S+ + +S T + + AP +Y + +R + + W +
Sbjct: 284 EIFQTLPVREPSPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLE 341
Query: 653 DDVLDWRQSELVLANQPTFQPYEIKVV 679
V + ++L + YE+++
Sbjct: 342 KKV-QGNKDHIILEHLQWTMGYEVQIT 367
Score = 30.9 bits (70), Expect = 1.7
Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 44/136 (32%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P V+ + +S+ P+ P Y++ + E W
Sbjct: 199 PYGVKIIELSQTTAKVSFNK-PDSHGGVPIHHYQVDVKE-VASEIW-------------- 242
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
K+V++ G T ++ P + RV A NG
Sbjct: 243 ------------KIVRSH----------------GVQTMVVLNNLEPNTTYEIRVAAVNG 274
Query: 725 AYNGPPSEIISFVTPE 740
G S+I F T
Sbjct: 275 KGQGDYSKIEIFQTLP 290
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 245 bits (628), Expect = 6e-76
Identities = 58/285 (20%), Positives = 100/285 (35%), Gaps = 17/285 (5%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTI-WSK-DGVPINPSDR----ISQGNYGKSLII 91
+ + + C G + I W +G ++P+ + + + +L I
Sbjct: 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 66
Query: 92 KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG 151
+ D G Y C V+ G ++++ + F P E E C
Sbjct: 67 YNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS 126
Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG--YVYKD 209
P I W H G+ + + N + I ++K+D G Y C +KD
Sbjct: 127 SLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186
Query: 210 VYVNVLAHAPEITEAPK--DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG----- 262
+ V V P + + G++V L C G P+P ++W + + +
Sbjct: 187 IQVIVNV-PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE 245
Query: 263 -RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
++ +L I +V D EY C A NK G S L V
Sbjct: 246 KHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 215 bits (550), Expect = 1e-64
Identities = 65/293 (22%), Positives = 106/293 (36%), Gaps = 23/293 (7%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVH-NGKPISQAPPNPRRKVGPN--- 180
+ P + E+ F C+ +G + +I W NG+ +S P R V N
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS--PNQQRISVVWNDDD 60
Query: 181 --RITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
+TI N D G Y C T G V V + AP + +G+ V
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAV 119
Query: 238 LTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
+ C V + P + W H +++ R+ +L L+I + D G Y C R
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 295 TAQGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI 350
+ V + + GQS T C+A P + ++ W + EPI
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP--EPTMSWTKDGEPI 237
Query: 351 ---DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
+ + E + LT+ + D +Y C A+ + +A L V
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 145 bits (366), Expect = 8e-39
Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 13/194 (6%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKEL---TGGRYTIL----ETG 270
++ P G++ C+V G K +++W E R +++ ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
L I + D+G Y C + GT + ++ + + + P E + G+ A C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-- 387
+ VS +I+W + + + RF+ ++ L + + D G Y C +
Sbjct: 123 DVVSSL--PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 388 DFIEAQATLTVQVP 401
+ + V VP
Sbjct: 181 EINFKDIQVIVNVP 194
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 259 bits (662), Expect = 1e-75
Identities = 79/429 (18%), Positives = 149/429 (34%), Gaps = 75/429 (17%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
A ++V + + G P P+ W K+G+P+ + I G+ L I V D G+YT
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH---VLTIMEVSERDTGNYTV 398
Query: 105 EVSNGVGEA-KSYSIDLSVLAAPYFTVEPEF---INAAEEETVTFECKASGLPEPE-IHW 159
++N + + +S+ + L V P + + T T C +P P IHW
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458
Query: 160 VHNGKPISQAPPNPRRKVGPNR----------------------------------ITIE 185
+ P+ V T+
Sbjct: 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLV 518
Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
+ + Y C A N +G + + +V PEIT P D + ++V L C +
Sbjct: 519 IQAANVSALYKCEAVNKVGRGERVISFHVTR-GPEITLQP-DMQPTEQESVSLWCTADRS 576
Query: 246 PKPEVNWIHNQKEL------------------------TGGRYTILETGDLKITDVAFAD 281
+ W + T + + +++ + + D
Sbjct: 577 TFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQD 636
Query: 282 SGEYTCFARNKLGTAQGSGSLTVKEHTH----ITDQPEDYEVEAGQSATFRCNAVSDPSL 337
G+Y C A+++ + + IT E+ G+S C A +P
Sbjct: 637 QGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNP-- 694
Query: 338 KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
I+W + +E + E ++ + +LT+ + + D G YTC+A + L + +A
Sbjct: 695 PPQIMWFKDNETLV-EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753
Query: 398 VQVPLEAPS 406
++ E +
Sbjct: 754 IEGAQEKTN 762
Score = 223 bits (569), Expect = 9e-63
Identities = 67/388 (17%), Positives = 122/388 (31%), Gaps = 39/388 (10%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQG 100
N +++ C G +W + +++ G + K+L I V +D G
Sbjct: 42 TIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTG 99
Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAPY-----FTVEPEFINAAEEETVTFECKASGLPEP 155
+Y C + Y + + +P+ +I + +TV C S
Sbjct: 100 AYKCFYRETDLASVIY-VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLN 158
Query: 156 EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ N TI + S G C A + +Y+ V+
Sbjct: 159 VSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
Query: 216 AH--APEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNW--------------IHNQKE 258
++ +P + G+ +VL C +++ ++ +
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 259 LTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT---DQPE 315
G L I V +D G YTC A + L T + S + V E +
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
E G+ + P I W + P++ + LT+ + SE D
Sbjct: 339 LVEATVGERVRIPAKYLGYP--PPEIKWYKNGIPLE----SNHTIKAGHVLTIMEVSERD 392
Query: 376 SGQYTCRAQTEL--DFIEAQATLTVQVP 401
+G YT + + +L V VP
Sbjct: 393 TGNYTVILTNPISKEKQSHVVSLVVYVP 420
Score = 220 bits (561), Expect = 1e-61
Identities = 70/416 (16%), Positives = 122/416 (29%), Gaps = 62/416 (14%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWS--KDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
+NK V + C+ + L ++ + + + +RIS + K I S G
Sbjct: 139 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS-KKGFTIPSYMISYAGM 197
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAA----PYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
CE +S + + V+ I + E + C A I
Sbjct: 198 VFCEAKINDESYQS-IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 256
Query: 158 --HWVHNGKPISQAPPNPRRKVGPN---------RITIENLRKSDTGNYGCNATNSLGYV 206
+W + R + +TI+ + +SD G Y C A++ L
Sbjct: 257 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 316
Query: 207 YKDVYVNVL--AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY 264
+V V + G+ V + + G P PE+ W N L +
Sbjct: 317 KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES-NH 375
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH-----THITDQPEDYEV 319
TI L I +V+ D+G YT N + + S +++ + +
Sbjct: 376 TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY 435
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ------------------- 360
+ G + T C + P I W E + V
Sbjct: 436 QYGTTQTLTCTVYAIP-PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494
Query: 361 ---------------SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
N T+ + S Y C A ++ E + V
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG 550
Score = 216 bits (552), Expect = 2e-60
Identities = 86/456 (18%), Positives = 137/456 (30%), Gaps = 86/456 (18%)
Query: 32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK---- 87
+K+ L C ++ + + K
Sbjct: 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282
Query: 88 --------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF---IN 136
+L I V SDQG YTC S+G+ K+ S + V P+ +
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGSGMESLVE 341
Query: 137 AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYG 196
A E V K G P PEI W NG P+ N K G + +TI + + DTGNY
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPL---ESNHTIKAG-HVLTIMEVSERDTGNYT 397
Query: 197 CNATNSLGYVYKDVYVNVLAHAP----EITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VN 251
TN + + V+++ + P E + + G T LTC V+ P P ++
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 457
Query: 252 WIHNQKEL----------------------------------TGGRYTILETGD---LKI 274
W +E ++ ++E + +
Sbjct: 458 WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTL 517
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
A S Y C A NK+G + S V IT QP+ + +S + C A
Sbjct: 518 VIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDM-QPTEQESVSLWCTADRS 576
Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQ---------------------SNDYSLTVTKSSE 373
++ W + ++ + + +S
Sbjct: 577 T--FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASL 634
Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
D G Y C AQ + V T
Sbjct: 635 QDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT 670
Score = 191 bits (487), Expect = 9e-52
Identities = 59/346 (17%), Positives = 101/346 (29%), Gaps = 66/346 (19%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSD------------------ 78
+ + L C P P I W ++
Sbjct: 428 LISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRS 487
Query: 79 -----------------RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121
+ +G + + Y CE N VG I
Sbjct: 488 VEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG-ERVISFH 546
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
V P T++P+ + E+E+V+ C A + W G
Sbjct: 547 VTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605
Query: 182 I---------------------TIENLRKSDTGNYGCNATNSLG----YVYKDVYVNVLA 216
+ ++N D G+Y C A + V + + V
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER- 664
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGDLKI 274
AP IT +++ T G+++ ++C G P P++ W + + L G +L I
Sbjct: 665 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 724
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVE 320
V D G YTC A + LG A+ ++ T+ +
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHH 770
Score = 184 bits (468), Expect = 4e-49
Identities = 48/335 (14%), Positives = 95/335 (28%), Gaps = 32/335 (9%)
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS 150
++ + C + S+ L + P +++ + + T+ C+
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLP-SVSLDL---PRLSIQKDILTIKANTTLQITCRG- 55
Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNATNSLGYV 206
+ ++ W+ + +TI + +DTG Y C +
Sbjct: 56 ---QRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS 112
Query: 207 YKDVYVNVLAHA----PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN---QKEL 259
VYV KTVV+ C + +
Sbjct: 113 VIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVP 172
Query: 260 TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ----PE 315
G R + I + +G C A+ + Q + V I D
Sbjct: 173 DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSH 232
Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP---------RFVQSNDYSL 366
E+ G+ C A ++ ++ + W S + ++ +L
Sbjct: 233 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 292
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
T+ + D G YTC A + L + + V
Sbjct: 293 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 327
Score = 131 bits (329), Expect = 1e-31
Identities = 35/232 (15%), Positives = 68/232 (29%), Gaps = 18/232 (7%)
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF 243
+++ + C T + V +++ P ++ T+ +TCR
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL----PRLSIQKDILTIKANTTLQITCR-- 54
Query: 244 GAPKPEVNWIHNQKELTGG-RYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQG 298
G + W +NQ T G L I V D+G Y CF R +
Sbjct: 55 GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVI 114
Query: 299 SGSLTVKEHTHITDQPEDYE-----VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
+ I + + ++ C S +L +S+ +
Sbjct: 115 YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCL-GSISNLNVSLCARYPEKRF-VP 172
Query: 354 SEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
R + T+ +G C A+ + ++ + V V
Sbjct: 173 DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 224
Score = 77.5 bits (190), Expect = 7e-15
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 13/139 (9%)
Query: 281 DSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
+ C S SL + ++ Q + ++A + C D
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDL---PRLSIQKDILTIKANTTLQITCRGQRDLD---- 60
Query: 341 IVWLRGSEPIDFESEPRFVQSND----YSLTVTKSSELDSGQYTCRAQTELDFIEAQATL 396
WL + E + +D +LT+ K D+G Y C + +
Sbjct: 61 --WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 397 TVQVPLEAPSNFTLIQVID 415
S V+
Sbjct: 119 QDYRSPFIASVSDQHGVVY 137
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 245 bits (626), Expect = 2e-74
Identities = 73/384 (19%), Positives = 127/384 (33%), Gaps = 40/384 (10%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSD---- 98
+ E+ C G P+P+ IW + DG + + Q + L+ D
Sbjct: 15 DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 74
Query: 99 --QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA---SGLP 153
Y C N G S + + + A Y+ + + + +C
Sbjct: 75 VHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 134
Query: 154 EPEIHWVHNGKP--ISQAPPNPRRKVGPN-RITIENLRKSDT-GNYGCNATNSLGYVYKD 209
+ W + + A + + V P+ + I + D +Y C + L +
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 194
Query: 210 --------VYVNVLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
+ + + AP K + T+ L C G P P W + T
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT 254
Query: 261 GGRYTILET------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
+ +L G L I D DSG+Y C N +G LTV P
Sbjct: 255 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 314
Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
V+ G+ A F C +P ++ W++ + I ++ L + +
Sbjct: 315 PTQTVDFGRPAVFTCQYTGNP--IKTVSWMKDGKAIG---------HSESVLRIESVKKE 363
Query: 375 DSGQYTCRAQTELDFIEAQATLTV 398
D G Y C + + + EA A L +
Sbjct: 364 DKGMYQCFVRNDRESAEASAELKL 387
Score = 184 bits (469), Expect = 5e-52
Identities = 69/320 (21%), Positives = 113/320 (35%), Gaps = 37/320 (11%)
Query: 125 APYFTVEPE-FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
P F EP I+ + ECKASG P PEI W+ + P R+ ++
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 184 IENLRKSDT------GNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
R D Y C A N G + +DV+V A E+ + G +
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA-VVAQYYEADVNKEHVIRGNSA 121
Query: 237 VLTCRV---FGAPKPEVNWIHNQKEL------TGGRYTILETGDLKITDVAFADS-GEYT 286
V+ C + V+W +++E G+Y +L +G+L I +V D Y
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181
Query: 287 CFARNKLGTAQGSGS----------LTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPS 336
C +++L + ++ + E+ + + C A P
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP- 240
Query: 337 LKLSIVWLRGSEPIDFESEPRF---VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ 393
S W + E + V+ +L + + DSG+Y C + +
Sbjct: 241 -APSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE 299
Query: 394 ATLTVQVPLEA---PSNFTL 410
LTV PL A P T+
Sbjct: 300 TVLTVTAPLSAKIDPPTQTV 319
Score = 180 bits (458), Expect = 2e-50
Identities = 46/212 (21%), Positives = 74/212 (34%), Gaps = 18/212 (8%)
Query: 7 SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
E ++ VI + + AP+ + +K + + L C G P P
Sbjct: 190 GETRLSATKGRLVI----TEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFR 245
Query: 67 WSKDGVPINPSDRISQGNY----GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
W K + + +LIIK D G Y C V+N VG S L+V
Sbjct: 246 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTV 304
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
A ++P F C+ +G P + W+ +GK I + +
Sbjct: 305 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH---------SESVL 355
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
IE+++K D G Y C N + +
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 239 bits (610), Expect = 6e-73
Identities = 65/309 (21%), Positives = 106/309 (34%), Gaps = 44/309 (14%)
Query: 38 VTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
V V L C +W KD I+ ++ + +L+I
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 70
Query: 97 SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL---- 152
D G Y + + G+ KS + L A +E A + + A G+
Sbjct: 71 KDAGIYEVILKDDRGKDKS-RLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYS 129
Query: 153 ------PEPEIHWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNATNS 202
+ +++W HNG I + R K G + I +D G Y +
Sbjct: 130 FVTYYVEDLKVNWSHNGSAIR---YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDG 186
Query: 203 LGYVYKDVYVNVLAH--------------------APEITEAPKDEYTVDGKTVVLTCRV 242
K V ++ A+ A + P +GK + LTC V
Sbjct: 187 KTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246
Query: 243 FGAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQ 297
+G P PEV+W+ N+K L + I V+ ADSG+Y +NK G+
Sbjct: 247 WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET 306
Query: 298 GSGSLTVKE 306
+++V
Sbjct: 307 SDFTVSVFI 315
Score = 203 bits (517), Expect = 2e-59
Identities = 51/322 (15%), Positives = 101/322 (31%), Gaps = 47/322 (14%)
Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKV- 177
+ P+F + E V +CK + + E I W + + I + +
Sbjct: 2 IDPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREI---SVDEKHDFK 57
Query: 178 -GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
G + I K D G Y + G + + A E+ + + +
Sbjct: 58 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA-FKELMMEVCKKIALSATDL 116
Query: 237 VLTCR----------VFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKITDVAFADS 282
+ + +VNW HN + R TG+ L+I + D
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTH---------------------ITDQPEDYEVEA 321
G+Y + Q + L+ + + + P+ ++
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236
Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSLTVTKSSELDSGQY 379
G++ CN DP + WL+ + + + T+ S DSG+Y
Sbjct: 237 GKALNLTCNVWGDP--PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKY 294
Query: 380 TCRAQTELDFIEAQATLTVQVP 401
+ + + T++V +P
Sbjct: 295 GLVVKNKYGSETSDFTVSVFIP 316
Score = 139 bits (352), Expect = 9e-37
Identities = 31/204 (15%), Positives = 65/204 (31%), Gaps = 13/204 (6%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKELT-GGRYTILE-TGDLKI 274
P E E V+L C+V K + W +++E++ ++ + L I
Sbjct: 7 GPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI 65
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
T+ + D+G Y ++ G + L + + + + + A
Sbjct: 66 TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGI 125
Query: 335 PSL--------KLSIVWLRGSEPIDFESEPRFVQSND-YSLTVTKSSELDSGQYTCRAQT 385
L + W I + + + + L + + + D G+Y
Sbjct: 126 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD 185
Query: 386 ELDFIEAQATLTVQVPLEAPSNFT 409
+ L+ Q EA + F
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYAEFQ 209
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 229 bits (584), Expect = 9e-67
Identities = 52/326 (15%), Positives = 103/326 (31%), Gaps = 42/326 (12%)
Query: 28 QNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYG 86
A V++ + ++ + C W ++ ++ + ++G
Sbjct: 206 PAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG 265
Query: 87 K-------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF---IN 136
+L I +D G + C +N G A + + L V+ + + P +
Sbjct: 266 DFNYERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVF 324
Query: 137 AAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRI------TIENLRK 189
+ E V + P+PE W++ + + + + + I + L+
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG 384
Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE 249
++ G Y +NS V V PEI + +L C G P+P
Sbjct: 385 TEGGTYTFLVSNSDVNAAIAFNVYVNT-KPEILTYDR------LVNGMLQCVAAGFPEPT 437
Query: 250 VNWIH--------NQKELTGGRYTILETGD--------LKITDVAFADSGEYTCFARNKL 293
++W + L T+ +G I AF +G C A N +
Sbjct: 438 IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDV 497
Query: 294 GTAQGSGSLTVKEHTHITDQPEDYEV 319
G + K + P +
Sbjct: 498 GKTSAYFNFAFKGNNKEQIHPHHHHH 523
Score = 228 bits (581), Expect = 2e-66
Identities = 68/419 (16%), Positives = 110/419 (26%), Gaps = 47/419 (11%)
Query: 21 ATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDR 79
S P + ++ + + + C + G P+ R
Sbjct: 102 GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161
Query: 80 ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL----AAPYFTVEPEFI 135
+I + C V S L V A P +V
Sbjct: 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY 221
Query: 136 NAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRI------TIENLR 188
E E T C + W G TI + R
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 281
Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV---DGKTVVLTCRVFGA 245
+D+G + C A N+ G + V+ I P TV DG+ V L
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVVD-KGFINIFPMINTTVFVNDGENVDLIVEYEAF 340
Query: 246 PKPE-VNWIHNQKELTG---------GRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
PKPE WI+ + T I +L +T + + G YT N
Sbjct: 341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400
Query: 296 AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESE 355
A + ++ V PE + + +C A P + +I W S
Sbjct: 401 AAIAFNVYVNTK------PEILTYDRLVNGMLQCVAAGFP--EPTIDWYFCPGTEQRCSA 452
Query: 356 PRFVQ-------------SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
++ S+ +G C+A ++ A +
Sbjct: 453 SVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511
Score = 218 bits (556), Expect = 8e-63
Identities = 68/445 (15%), Positives = 130/445 (29%), Gaps = 48/445 (10%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
+ ++ L C G W+ + + ++ I + E ++ G YT
Sbjct: 47 IVRVGDEIRLLCTDPGFV----KWTFEILDETNENK------QNEWITEKAEATNTGKYT 96
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
C +G+ SI + V + + E+ C + PE + +
Sbjct: 97 CTNKHGLSN----SIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGC 151
Query: 164 KPISQAPPNPRRKVGPNR-ITIENLRKS-DTGNYGCNATNSLGYVYKD---VYVNVLAHA 218
+ P + R P I I++++++ C+ V + + V A
Sbjct: 152 QGKP-LPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA 210
Query: 219 PEITEAPKDEYTVD-GKTVVLTCRVFGAPKP-EVNWIHNQKELT---------GGRYTIL 267
+ K Y + G+ +TC + W + G +
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270
Query: 268 ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE---DYEVEAGQS 324
L I+ DSG + C+A N G+A + +L V + I P V G++
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGEN 330
Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQ 378
+ P + W+ + + E N+ L +T+ + G
Sbjct: 331 VDLIVEYEAFPKPE-HQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389
Query: 379 YTCRAQTELDFIEAQATLTVQVP-----LEAPSNFTLI-QVIDAKKAVVSWNPVSPQSLR 432
YT + V + N L + + W R
Sbjct: 390 YTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQR 449
Query: 433 GHFRGYKVQTWTEKDGEGSIRELIV 457
V T +L+V
Sbjct: 450 CSASVLPVDVQTLNSSGPPFGKLVV 474
Score = 179 bits (454), Expect = 1e-48
Identities = 45/324 (13%), Positives = 88/324 (27%), Gaps = 39/324 (12%)
Query: 98 DQGSYTCEV----SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP 153
+ C + G + S+ + P + + + C G
Sbjct: 6 GAWDFLCVLLLLLRVQTGSS-QPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-- 62
Query: 154 EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
+ W + N E ++TG Y C + L +YV
Sbjct: 63 --FVKWTFEILDETNENKQ-------NEWITEKAEATNTGKYTCTNKHGLS---NSIYVF 110
Query: 214 VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETG 270
V ++ + Y + ++ C + P+ + + R+
Sbjct: 111 VRD-PAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKA 168
Query: 271 DLKITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHT------HITDQPEDYEVEAGQ 323
+ I V A C + G + S +K ++ Y + G+
Sbjct: 169 GIMIKSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGE 227
Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSG 377
T C + W R + + + D+ +LT++ + DSG
Sbjct: 228 EFTVTCTIKDVS-SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286
Query: 378 QYTCRAQTELDFIEAQATLTVQVP 401
+ C A TL V
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVDK 310
Score = 78.9 bits (194), Expect = 2e-15
Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 20/145 (13%)
Query: 281 DSGEYTC----FARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPS 336
+ ++ C R + G++Q S S I D V G C
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG--- 62
Query: 337 LKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATL 396
+ W E ++ K+ ++G+YTC + L +
Sbjct: 63 ---FVKWTF-------EILDETNENKQNEWITEKAEATNTGKYTCTNKHGL---SNSIYV 109
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVV 421
V+ P + + + +V
Sbjct: 110 FVRDPAKLFLVDRSLYGKEDNDTLV 134
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 214 bits (548), Expect = 1e-65
Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 2/186 (1%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
+ AP T E ++A EE TF C P+PEI W N I +
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR 241
+TI ++ SD G Y C A N +G + + P+IT P + ++G VL C
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123
Query: 242 VFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG 300
G PKP V+WI L R +LE+G L+I +V D+G+Y C A+N LGTA
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKL 183
Query: 301 -SLTVK 305
L V+
Sbjct: 184 VKLEVE 189
Score = 162 bits (412), Expect = 3e-46
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 9/192 (4%)
Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGD- 271
L AP IT + + + C V P+PE++W N+ + RY+I E G
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 272 LKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
L I V +D G Y C A N +G A + G+L VK IT P + ++ G A C
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
+ +P K S+ W++G + R SL + + D+GQY C A+ L
Sbjct: 124 TMGNP--KPSVSWIKGDSALR--ENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Query: 391 EAQ-ATLTVQVP 401
++ L V+V
Sbjct: 180 YSKLVKLEVEVF 191
Score = 162 bits (411), Expect = 3e-46
Identities = 55/178 (30%), Positives = 73/178 (41%), Gaps = 8/178 (4%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSY 102
AL + C P P+ W+++ + I D R S G+ L I VE SD G Y
Sbjct: 18 DALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIY 77
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN 162
C +NGVG A L V P T P + E C G P+P + W+
Sbjct: 78 CCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG 137
Query: 163 GKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYK---DVYVNVLA 216
+ N R V + + I N++K D G Y C A NSLG Y + V V A
Sbjct: 138 DSAL---RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192
Score = 79.8 bits (197), Expect = 3e-17
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 304 VKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND 363
+ + IT E + + ATF C S P + I W R I ++ N
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYP--QPEISWTRNKILIKLFDTRYSIRENG 61
Query: 364 YSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATLTVQVP---LEAPSNFTLIQ 412
LT+ + D G Y C A + +E+ L V++ P N +I+
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIE 114
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 204 bits (521), Expect = 1e-61
Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 12/194 (6%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN---R 181
AP+F E +N + T CK +G P+P + W GK I R + +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA----HAPEITEAPKDEYTVDGKTVV 237
+ I ++ D Y ATN G V + V H P+ E + + G+ V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 238 LTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFADSGEYTCFARNK 292
+ G P P + W Q + G Y ++ T + V D+G Y A+N+
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 293 LGTAQGSGSLTVKE 306
G Q + L V +
Sbjct: 184 FGIDQKTVELDVAD 197
Score = 151 bits (382), Expect = 4e-42
Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 15/197 (7%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD-- 271
A AP E ++ L C+V G PKP V W KE+ G +Y I E
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI-----TDQPEDYEVEAGQS 324
L I V D+ Y A N+ G+ G+ SL V+ I + G+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS--LTVTKSSELDSGQYTCR 382
+ + P I W +G + ID + + + ++ + D+G Y
Sbjct: 122 VSIKIPFSGKP--DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 383 AQTELDFIEAQATLTVQ 399
A+ + L V
Sbjct: 180 AKNRFGIDQKTVELDVA 196
Score = 147 bits (374), Expect = 4e-41
Identities = 44/185 (23%), Positives = 59/185 (31%), Gaps = 18/185 (9%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGK-SLIIKHVEFSDQ 99
L C G P P W + G I RI + G LII V D
Sbjct: 15 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLA-----APYFTVEPEFINAAEEETVTFECKASGLPE 154
Y +N G + L V P ++A E V+ + SG P+
Sbjct: 75 TVYQVRATNQGGSVSG-TASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133
Query: 155 PEIHWVHNGKPISQAPPNPRRKVGPNR-----ITIENLRKSDTGNYGCNATNSLGYVYKD 209
P I W I N +V R + + + D G Y A N G K
Sbjct: 134 PVITWQKGQDLID---NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT 190
Query: 210 VYVNV 214
V ++V
Sbjct: 191 VELDV 195
Score = 80.5 bits (199), Expect = 1e-17
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
H ++ + V +AT C P K + W R + I + +Q +
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHP--KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP--LEAPSNFTLIQVIDAKK 418
L + ++ D+ Y RA + + A+L V+VP + P + + A +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 200 bits (511), Expect = 2e-60
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 9/190 (4%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---GPNR 181
AP FT + + E T TFE SG P PE+ W +G+ IS + + G +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLT 239
+TI + K+++G Y ATN G + V A P + + G V L
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 240 CRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKITDVAFADSGEYTCFARNKLGT 295
RV G P P V + + E+ + I + GD L I + DSG Y+ A N +G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 296 AQGSGSLTVK 305
A + L V+
Sbjct: 185 ATSTAELLVQ 194
Score = 157 bits (398), Expect = 2e-44
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 12/193 (6%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD-- 271
AP T+ + ++G T + G P PEV+W + + ++ I +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HITDQPEDYEVEAGQSATF 327
L I V A+SG Y+ A N G A + L VK T + + + V G
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLTVTKSSELDSGQYTCRAQTE 386
+ P + + R I + + Q D YSL + ++ DSG Y+ A
Sbjct: 124 QVRVTGIP--TPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 387 LDFIEAQATLTVQ 399
+ + A L VQ
Sbjct: 182 VGRATSTAELLVQ 194
Score = 150 bits (380), Expect = 6e-42
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 15/182 (8%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKSLIIKHVEFSDQ 99
V L G P+P+ W +DG I+ S +IS + L I V ++
Sbjct: 16 VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANS 75
Query: 100 GSYTCEVSNGVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPE 156
G Y+ + +NG G+A S + +L V A P F + + + V + + +G+P P
Sbjct: 76 GRYSLKATNGSGQATS-TAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV 134
Query: 157 IHWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212
+ + +G I + ++ + I D+G Y NATNS+G +
Sbjct: 135 VKFYRDGAEI---QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Query: 213 NV 214
V
Sbjct: 192 LV 193
Score = 82.8 bits (205), Expect = 2e-18
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF---VQSNDYS 365
T + V G +ATF + P + W R + I + P
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHISGFP--VPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
LT+ ++ +SG+Y+ +A + A L V+ P+
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 202 bits (515), Expect = 2e-59
Identities = 57/299 (19%), Positives = 98/299 (32%), Gaps = 38/299 (12%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ C TP + WSKD V S R + + K + D G
Sbjct: 14 DDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGI 72
Query: 102 YTCEVSNGVGEAKSYSIDLSVL-----------AAPYFTVEPEFINAAEEETVTFECKA- 149
Y+C+V++ G A SY ID L + E+ V F +A
Sbjct: 73 YSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAE 132
Query: 150 SGLPEPEIHWVHNGKPISQAPP---NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV 206
+++++ N K I + P + R G + +E L+ D G Y +
Sbjct: 133 KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 192
Query: 207 YKDVYVNVLAHAPEITEA-----------------PKDEYTVDGKTVVLTCRVFGAPKP- 248
+ V + EA V+L C+V K
Sbjct: 193 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 252
Query: 249 EVNWIHNQKELTGGRYTILETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
+ W +++E++ + G L IT+ + D+G Y ++ G + L +
Sbjct: 253 HIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311
Score = 181 bits (460), Expect = 1e-51
Identities = 50/315 (15%), Positives = 105/315 (33%), Gaps = 46/315 (14%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN---- 180
P+ ++ ++ FEC P+ E W + +PR +V
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDKMT-PKSEFSWSKDYVST---EDSPRLEVESKGNKT 58
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV-----------LAHAPEITEAPKD-E 228
++T ++L D G Y C+ T++ G + ++ E
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD-----LKITDVAFADS 282
G+ + +VN+I N+KE+ G +Y + + + + + D
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDE 178
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITD------------------QPEDYEVEAGQS 324
G YT ++ T + L + + +EV +
Sbjct: 179 GTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECN 238
Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
+C V++ + IVW + I E + +L +T+ S+ D+G Y +
Sbjct: 239 VLLKC-KVANIKKETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILK 296
Query: 385 TELDFIEAQATLTVQ 399
+ +++ L +
Sbjct: 297 DDRGKDKSRLKLVDE 311
Score = 124 bits (312), Expect = 2e-31
Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 29/200 (14%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNY 85
+ E+ + + + + + + I + I +
Sbjct: 105 KFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG 164
Query: 86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF----------- 134
+ ++ ++ D+G+YT ++ +G S ++ L E EF
Sbjct: 165 IIEMFMEKLQDEDEGTYTFQLQDGKATNHS-TVVLVGDVFKKLQKEAEFQRQEWIRKQGP 223
Query: 135 -------INAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKV--GPNRITI 184
E V +CK + + E I W + + I + + G + I
Sbjct: 224 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI---SVDEKHDFKDGICTLLI 280
Query: 185 ENLRKSDTGNYGCNATNSLG 204
K D G Y + G
Sbjct: 281 TEFSKKDAGIYEVILKDDRG 300
Score = 116 bits (291), Expect = 1e-28
Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 23/210 (10%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD--- 271
P E + ++ C PK E +W + R + G+
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQG------------SGSLTVKEHTHITDQPEDYEV 319
+ D+ D G Y+C + G A + S K T E+
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 320 EAGQSATFRCNAV-SDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVTKSSELD 375
F A + ++ + I + + + + + K + D
Sbjct: 120 LEKGQVRFWMQAEKLSG--NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177
Query: 376 SGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
G YT + Q + L V +
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
Score = 75.8 bits (186), Expect = 5e-15
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
V V L C I W KD I+ ++ + +L+I
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 285
Query: 97 SDQGSYTCEVSNGVGEAKSYSIDLSV 122
D G Y + + G+ KS + L
Sbjct: 286 KDAGIYEVILKDDRGKDKS-RLKLVD 310
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 198 bits (506), Expect = 2e-59
Identities = 58/210 (27%), Positives = 82/210 (39%), Gaps = 13/210 (6%)
Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
+ P +P+ +F C A G P P I W NGK +S P
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 181 RITIENL----RKSDTGNYGCNATNSLG-YVYKDVYVNVL------AHAPEITEAPKDEY 229
I+I + D Y C A N +G V D + + A P IT+ P
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 230 TVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGDLKITDVAFADSGEYTCF 288
G TV++TC+ G P P + WI NQ ++ L+ G L+I + D G+Y C
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
Query: 289 ARNKLGTAQGSGS-LTVKEHTHITDQPEDY 317
A N +GT + L VK T +
Sbjct: 182 AENSMGTEHSKATNLYVKVRRVGTKHHHHH 211
Score = 151 bits (383), Expect = 4e-42
Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 20/202 (9%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGD-- 271
AH PEI P+++ G C G P P + W N K++ T RYT+LE
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 272 --LKITDVAFA-DSGEYTCFARNKLGTA-QGSGSLTVKEHT-------HITDQPEDYEVE 320
L+I V D Y C A N +G A +LT+ E IT P +E
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
G + C A+ +P +I W++ +D + D L + S E D G+Y
Sbjct: 124 VGHTVLMTCKAIGNP--TPNIYWIKNQTKVDMSN--PRYSLKDGFLQIENSREEDQGKYE 179
Query: 381 CRAQTELDFIEAQAT-LTVQVP 401
C A+ + ++AT L V+V
Sbjct: 180 CVAENSMGTEHSKATNLYVKVR 201
Score = 149 bits (379), Expect = 2e-41
Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 18/198 (9%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHV-EFSD 98
+C G P P +W K+G ++ + + Q L I+ V D
Sbjct: 17 GVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRD 76
Query: 99 QGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKASG 151
Y C NGVG+A S L++ P T P TV CKA G
Sbjct: 77 DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136
Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVY-KD 209
P P I+W+ N + + R + + IEN R+ D G Y C A NS+G + K
Sbjct: 137 NPTPNIYWIKNQTKV---DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKA 193
Query: 210 VYVNVLAHAPEITEAPKD 227
+ V T+
Sbjct: 194 TNLYVKV-RRVGTKHHHH 210
Score = 76.8 bits (189), Expect = 5e-16
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN 362
T I +P++ V G A+F C A DP SIVW + + + V
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDP--PPSIVWRKNGKKVSGTQSRYTVLEQ 59
Query: 363 DYSLTVTK----SSELDSGQYTCRAQTEL-DFIEAQATLTVQVPLEAPSNFTLIQV 413
+++ + + D Y C A+ + D + A ATLT+ + P+ F +I
Sbjct: 60 PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQ 115
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 198 bits (506), Expect = 4e-59
Identities = 57/232 (24%), Positives = 89/232 (38%), Gaps = 26/232 (11%)
Query: 110 VGEAKSYSIDLSVLAAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
+ E S + + APY+T +E TV F C A G P P + W+ NGK
Sbjct: 1 MAE-DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE 59
Query: 166 ISQAPPNPRRKVGPNR--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA----P 219
Q KV + +E++ SD GNY C N G + +++V+ +
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG---------------GRY 264
P + TV G V C+V+ +P + WI + ++
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPED 316
L + +V AD+GEY C N +G A S LTV + ++
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKE 231
Score = 156 bits (397), Expect = 9e-44
Identities = 54/218 (24%), Positives = 76/218 (34%), Gaps = 28/218 (12%)
Query: 216 AHAPEITEAPKDE---YTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTI 266
AP T K E + V TV C G P P + W+ N KE GG
Sbjct: 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 72
Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEA 321
+ L + V +D G YTC N+ G+ + L V E + P +
Sbjct: 73 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV 132
Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP------------RFVQSNDYSLTVT 369
G F C SD + I W++ E + P SN L +
Sbjct: 133 GGDVEFVCKVYSDA--QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
+E D+G+Y C+ + A LTV +AP
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228
Score = 146 bits (370), Expect = 3e-40
Identities = 51/224 (22%), Positives = 82/224 (36%), Gaps = 25/224 (11%)
Query: 27 SQNRHAP---KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG 83
S N+ AP + + ++ V+ C GG P+P W K+G RI
Sbjct: 10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 69
Query: 84 NY---GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA-----PYFTVEPEFI 135
SLI++ V SD+G+YTC V N G + L V+ P
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDVVERSRHRPILQAGLPANA 128
Query: 136 NAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN---PRRKVGPNRI---------T 183
+ V F CK +P I W+ + + P KV +
Sbjct: 129 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA 188
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKD 227
+ N+ ++D G Y C +N +G + ++ VL + K+
Sbjct: 189 LFNVTEADAGEYICKVSNYIGQANQSAWLTVLP-KQQAPGREKE 231
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 201 bits (513), Expect = 4e-59
Identities = 69/307 (22%), Positives = 106/307 (34%), Gaps = 30/307 (9%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----T 269
A AP E ++ L C+V G PKP V W KE+ G +Y I E
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT-----DQPEDYEVEAGQS 324
L I V D+ Y A N+ G+ G+ SL V+ I + G+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS--LTVTKSSELDSGQYTCR 382
+ + P I W +G + ID + + + ++ + D+G Y
Sbjct: 122 VSIKIPFSGKPDPV--ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 383 AQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRGH-FRGYK 439
A+ + L V + P ++V D + ++W P S G Y
Sbjct: 180 AKNRFGIDQKTVELDVADVPDPPRG---VKVSDVSRDSVNLTWTE--PASDGGSKITNYI 234
Query: 440 VQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEIIS-F 497
V+ + R L V + T V + F RV+A N PSE
Sbjct: 235 VEKCA----TTAERWLRVGQARETRYTVINLFGKTSYQF-RVIAENKFGLSKPSEPSEPT 289
Query: 498 VTPEGVP 504
+T E
Sbjct: 290 ITKEDKT 296
Score = 154 bits (391), Expect = 4e-42
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 12/194 (6%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-- 182
AP+F E +N + T CK +G P+P + W GK I R +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 183 -TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA----HAPEITEAPKDEYTVDGKTVV 237
I ++ D Y ATN G V + V H P+ E + + G+ V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 238 LTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFADSGEYTCFARNK 292
+ G P P + W Q + G Y ++ T + V D+G Y A+N+
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 293 LGTAQGSGSLTVKE 306
G Q + L V +
Sbjct: 184 FGIDQKTVELDVAD 197
Score = 136 bits (344), Expect = 9e-36
Identities = 46/218 (21%), Positives = 69/218 (31%), Gaps = 30/218 (13%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGK-SLIIKHVEF 96
+ L C G P P W + G I RI + G LII V
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD 71
Query: 97 SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV-----EPEFINAAEEETVTFECKASG 151
D Y +N G + L V + ++A E V+ + SG
Sbjct: 72 DDATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130
Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATNSLGYV 206
P+P I W I N +V + + + + D G Y A N G
Sbjct: 131 KPDPVITWQKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187
Query: 207 YKDVYVNVLA-----HAPEITEAPKDEYTVDGKTVVLT 239
K V ++V ++++ V +V LT
Sbjct: 188 QKTVELDVADVPDPPRGVKVSD-------VSRDSVNLT 218
Score = 83.7 bits (207), Expect = 1e-17
Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 38/302 (12%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY---S 365
H ++ + V +AT C P K + W R + I + +Q
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHP--KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP--LEAPSNFTLIQVIDAKKAVVSW 423
L + ++ D+ Y RA + + A+L V+VP + P + + A +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG---- 119
Query: 424 NPVSPQSLRGHFRGYKVQT--WTEKDGE----GSIRELIVNKGESTTTEVDKFVPASKNF 477
S++ F G W K + ++IV + ++ + +
Sbjct: 120 ---EVVSIKIPFSGKPDPVITWQ-KGQDLIDNNGHYQVIVTRSFTSLVFPNG---VERKD 172
Query: 478 A---RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV- 533
A V A N + + VP + ++ + + L W +P G
Sbjct: 173 AGFYVVCAKNRFGI---DQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK 229
Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
+ Y ++ + + + T + L T Y+ + K G
Sbjct: 230 ITNYIVEKCATTAERWLRV-------GQARETRYTVINLFGKTSYQFRVIAENKFGLSKP 282
Query: 594 SK 595
S+
Sbjct: 283 SE 284
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 199 bits (506), Expect = 5e-59
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 30/234 (12%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
APY+T ++ + + TV F C A+G P P I W+ NG+ K+
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 180 NR--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE----ITEAPKDEYTVDG 233
+ + +E++ SD GNY C N G + + ++VL +P P ++ V G
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129
Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKEL----------------TGGRYTILETGDLKITDV 277
V C+V+ +P + W+ + + + ++ L++ +V
Sbjct: 130 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV 189
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
+ D GEY C A N +G A+ + L+V ++ VEA ++ + +
Sbjct: 190 SERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEEL----VEADEAGSVHHHH 239
Score = 150 bits (381), Expect = 1e-41
Identities = 55/223 (24%), Positives = 77/223 (34%), Gaps = 29/223 (13%)
Query: 214 VLAHAPEITEAPKDE---YTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRY 264
V AP T + + V TV C G P P ++W+ N +E GG
Sbjct: 7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 66
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEV 319
+ L + V +D G YTC NK G+ + + +L V E + P +
Sbjct: 67 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP-------------RFVQSNDYSL 366
G F C SD + I WL+ E + P D L
Sbjct: 127 VLGSDVEFHCKVYSDA--QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
+ SE D G+Y CRA + E L+V P A
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELV 227
Score = 141 bits (358), Expect = 2e-38
Identities = 54/232 (23%), Positives = 80/232 (34%), Gaps = 34/232 (14%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---G 86
R K V V R C G P P W K+G RI
Sbjct: 19 RMDKKLLAVPAANTVRFR-------CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 71
Query: 87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA-----APYFTVEPEFINAAEEE 141
SL+++ V SD+G+YTC V N G + + L VL P A
Sbjct: 72 WSLVMESVVPSDRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPANQTAVLGS 130
Query: 142 TVTFECKASGLPEPEIHWVHNGKPI-SQAPPNPRRKVGPNRI------------TIENLR 188
V F CK +P I W+ + + S+ P+ V + + N+
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190
Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
+ D G Y C ATN +G K +++V A ++E + +
Sbjct: 191 ERDGGEYLCRATNFIGVAEKAFWLSVHG-----PRAAEEELVEADEAGSVHH 237
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 195 bits (498), Expect = 1e-58
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 5/186 (2%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
+ F + E C+ S P P + W+++ + ++ N + N +
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60
Query: 184 IENLRKSDTGNYGCNATNS-LGYVYKDVYVNVLAHAPEIT--EAPKDEYTVDGKTVVLTC 240
I N+ KSD G Y C G + + ++ P I+ + + G+ + +C
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120
Query: 241 RVFGAPKPEVNWIHNQKELT-GGRYTIL-ETGDLKITDVAFADSGEYTCFARNKLGTAQG 298
R G+P+P ++W N K + +Y + +L + ++ +D G Y C A NK G +
Sbjct: 121 RASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180
Query: 299 SGSLTV 304
L V
Sbjct: 181 QAFLQV 186
Score = 154 bits (390), Expect = 2e-43
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 10/190 (5%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKI 274
E + G+ + CRV +P P V+W+++ +E+T R+ +L +L+I
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCN 330
++ +D G Y C R + + V + + + + E G+ TF C
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
A P + +I W R + I+ E+E ++ ++ LTV D G Y CRA +
Sbjct: 122 ASGSP--EPAISWFRNGKLIE-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED 178
Query: 391 EAQATLTVQV 400
E QA L V V
Sbjct: 179 EKQAFLQVFV 188
Score = 144 bits (365), Expect = 7e-40
Identities = 53/194 (27%), Positives = 78/194 (40%), Gaps = 18/194 (9%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP--SDRISQGNYGK 87
R Q + + E+ C +P P W + +R +
Sbjct: 6 REVVSPQEFKQ-------GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 57
Query: 88 SLIIKHVEFSDQGSYTCEVSN-GVGEAKSYSIDLSVLAAPYFTVEPEFIN--AAEEETVT 144
+L I ++ SD+G Y CE GE I + V P ++ + N A E +T
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117
Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATNS 202
F C+ASG PEP I W NGK I N + + + +T+ N+ SD G Y C ATN
Sbjct: 118 FSCRASGSPEPAISWFRNGKLI---EENEKYILKGSNTELTVRNIINSDGGPYVCRATNK 174
Query: 203 LGYVYKDVYVNVLA 216
G K ++ V
Sbjct: 175 AGEDEKQAFLQVFV 188
Score = 76.4 bits (188), Expect = 4e-16
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
+ E + G+ A C S P ++ WL +E + S+ RF + +L +
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRVSSSP--APAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62
Query: 370 KSSELDSGQYTCRAQTEL--DFIEAQATLTVQVP 401
++ D G Y C + E + + V VP
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP 96
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 193 bits (491), Expect = 3e-57
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 12/204 (5%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP--RRKVGPN- 180
P P + ++ E T CKA G P P I W G+ + +P R + P+
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 181 -----RITIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGK 234
RI + D G Y C A N LG V D + V + + P D G+
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE 127
Query: 235 TVVLTCRV-FGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
V+ C+ G P+P ++W + L + G L IT +D+G+Y C N
Sbjct: 128 PAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNM 187
Query: 293 LGTAQGS-GSLTVKEHTHITDQPE 315
+G + LTV E
Sbjct: 188 VGERESEVAELTVLERPSFVKAAA 211
Score = 151 bits (383), Expect = 4e-42
Identities = 51/214 (23%), Positives = 79/214 (36%), Gaps = 22/214 (10%)
Query: 212 VNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL------TGGRYT 265
+ P I E P D G+ L C+ G P P + W + +
Sbjct: 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 266 ILETGDLKITDVAFA-----DSGEYTCFARNKLGTAQG-SGSLTVKEHT-HITDQPEDYE 318
+L +G L + D G Y C ARN LG A SL V P D
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVM 122
Query: 319 VEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG 377
V G+ A C P + +I W + P+D + + L +T + + D+G
Sbjct: 123 VAVGEPAVMECQPPRGHP--EPTISWKKDGSPLD--DKDERITIRGGKLMITYTRKSDAG 178
Query: 378 QYTCRAQTELDFIEAQ-ATLTVQVP---LEAPSN 407
+Y C + E++ A LTV ++A ++
Sbjct: 179 KYVCVGTNMVGERESEVAELTVLERPSFVKAAAH 212
Score = 144 bits (365), Expect = 1e-39
Identities = 51/195 (26%), Positives = 71/195 (36%), Gaps = 17/195 (8%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF--- 96
+ + + L C G P P W K G + + + SL +
Sbjct: 20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 97 --SDQGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFECKA-SGL 152
D+G Y C N +GEA S+ L V F P + A E EC+ G
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGH 139
Query: 153 PEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVY-KDV 210
PEP I W +G P+ R ++ I RKSD G Y C TN +G +
Sbjct: 140 PEPTISWKKDGSPL---DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVA 196
Query: 211 YVNVLAHAPEITEAP 225
+ VL P +A
Sbjct: 197 ELTVLE-RPSFVKAA 210
Score = 84.9 bits (210), Expect = 7e-19
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 44 VALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSY 102
+ + + C G P P W KDG P++ D G L+I + SD G Y
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG-KLMITYTRKSDAGKY 180
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
C +N VGE +S +L+VL P F
Sbjct: 181 VCVGTNMVGERESEVAELTVLERPSFVKAAA 211
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 192 bits (489), Expect = 4e-57
Identities = 63/197 (31%), Positives = 89/197 (45%), Gaps = 20/197 (10%)
Query: 124 AAPYFTVEPEFIN--AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN- 180
+ P ++ + N A E +TF C+ASG PEP I W NGK I N + + +
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI---EENEKYILKGSN 57
Query: 181 -RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLT 239
+T+ N+ SD G Y C ATN G K ++ V P I + K+E T + V L
Sbjct: 58 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV-QPHIIQ-LKNETTYENGQVTLV 115
Query: 240 CRVFGAPKPEVNWIHNQKELT--------GGRYTILE---TGDLKITDVAFADSGEYTCF 288
C G P PE+ W T GR + + L I DV +DSG Y C
Sbjct: 116 CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175
Query: 289 ARNKLGTAQGSGSLTVK 305
A +++G Q S L ++
Sbjct: 176 AASRIGGHQKSMYLDIE 192
Score = 155 bits (393), Expect = 8e-44
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
A R +++ C G+P P W ++G I +++ L ++++ SD G Y
Sbjct: 15 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 74
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
C +N GE + L V P+ ++ + E VT C A G P PEI W
Sbjct: 75 CRATNKAGEDEK-QAFLQVFVQPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAV 132
Query: 164 KPISQAPPNPRRKVGPNRI-----------TIENLRKSDTGNYGCNATNSLGYVYKDVYV 212
K RI I++++ SD+G Y C A + +G K +Y+
Sbjct: 133 DGF---TFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189
Query: 213 NV 214
++
Sbjct: 190 DI 191
Score = 150 bits (380), Expect = 6e-42
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 15/194 (7%)
Query: 218 APEIT--EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILE-TGDLK 273
P I+ + + G+ + +CR G+P+P ++W N K + +Y + +L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS 333
+ ++ +D G Y C A NK G + L V HI Q ++ T C+A
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHII-QLKNETTYENGQVTLVCDAEG 120
Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFV--------QSNDYSLTVTKSSELDSGQYTCRAQT 385
+P I W R + F + + Q SL + DSG+Y C A +
Sbjct: 121 EP--IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 386 ELDFIEAQATLTVQ 399
+ + L ++
Sbjct: 179 RIGGHQKSMYLDIE 192
Score = 78.3 bits (193), Expect = 9e-17
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
+ + + E G+ TF C A P + +I W R + I+ E+E ++ ++ LTV
Sbjct: 7 MPQKSFNATAERGEEMTFSCRASGSP--EPAISWFRNGKLIE-ENEKYILKGSNTELTVR 63
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
D G Y CRA + E QA L V V
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
Score = 69.8 bits (171), Expect = 8e-14
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINPSDRISQGNY-------GKS 88
+ K E N +V L C G P+P+ W + DG D+ G S
Sbjct: 99 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 158
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
L IK V+ SD G Y CE ++ +G + S+ L +
Sbjct: 159 LHIKDVKLSDSGRYDCEAASRIGGHQK-SMYLDI 191
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 192 bits (490), Expect = 6e-57
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 17/208 (8%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
+P P + + E T CK G PEP I W +G+P+S R +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 181 --RITIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
T++ ++ D G Y C A N +G V + + + + PKD G+T +
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETAL 127
Query: 238 LTC-RVFGAPKPEVNWIHNQKEL---------TGGRYTILETGDLKITDVAFADSGEYTC 287
L C G P+P + WI + L R I++ G+L I++V D G Y C
Sbjct: 128 LECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
Query: 288 FARNKLGTAQGS-GSLTVKEHTHITDQP 314
A+N +GT + S L V+
Sbjct: 188 IAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 149 bits (378), Expect = 2e-41
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 20/215 (9%)
Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG----RYTI 266
+ +P I E P D + L C+V G P+P + W + + ++
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 267 LETGDLK----ITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKE-HTHITDQPEDYEVE 320
+ G L + D GEY C A+N++G A SL + +P+D V
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 321 AGQSATFRCNAVS-DPSLKLSIVWLRGSEPID------FESEPRFVQSNDYSLTVTKSSE 373
G++A C P + +++W++ P+D F + R + +L ++
Sbjct: 122 KGETALLECGPPKGIP--EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 374 LDSGQYTCRAQTELDFIEAQ-ATLTVQVPLEAPSN 407
+D G Y C AQ + E+ A L VQV A +
Sbjct: 180 IDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHH 214
Score = 145 bits (367), Expect = 7e-40
Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 17/194 (8%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ------GNYGKSLIIKHVEFS 97
V +N+ L C G P P W KDG P++ +++ S G ++ +
Sbjct: 20 VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFEC-KASGLPEP 155
D G Y C N VG+A S L + F VEP+ A+ ET EC G+PEP
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 156 EIHWVHNGKPISQAP-----PNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYK- 208
+ W+ +G P+ + R ++ + I N+ D GNY C A N +G
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Query: 209 --DVYVNVLAHAPE 220
+ V V A A
Sbjct: 200 YAKLIVQVKAAAHH 213
Score = 73.0 bits (179), Expect = 9e-15
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK----- 87
PK V + + L + G P P IW KDGVP++ +S G +
Sbjct: 115 PKDTRVAKGETALLECGPPK------GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD 168
Query: 88 --SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
+L+I +VE D+G+Y C N VG +S L V
Sbjct: 169 GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 190 bits (483), Expect = 4e-55
Identities = 52/289 (17%), Positives = 88/289 (30%), Gaps = 22/289 (7%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
AP + ETVT C ++G + W P P +T
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGST----LTT 55
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG 244
N +TG Y C +++ V A ++ V+G+ VL C +
Sbjct: 56 RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD 115
Query: 245 A-PKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGS 301
K V+ + Y I DS Y C G S
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVN-GRESTSTG 174
Query: 302 LTVKEHT------HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESE 355
+ +K + I +P G++A C+A + +++ RG ++
Sbjct: 175 IWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG-FNVILKRGDTKLEIPLN 233
Query: 356 PRF---VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
F +L++ D+G Y+C A ++ A V
Sbjct: 234 SDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282
Score = 188 bits (478), Expect = 2e-54
Identities = 49/284 (17%), Positives = 89/284 (31%), Gaps = 24/284 (8%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
V + V L C+ G+ W PI+P + + G +L ++ F + G+Y
Sbjct: 15 VVEPGETVTLRCVSNGSV----EWDG---PISPYWTLDPESPGSTLTTRNATFKNTGTYR 67
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASGL-PEPEIHWVH 161
C S +I L V + + + + + E + C + + + +
Sbjct: 68 CTELEDPMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMR 126
Query: 162 NGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNS-LGYVYKDVYVNVLA--- 216
G P R I + D+ Y C + +++ V
Sbjct: 127 EGGRQV--LRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHP 184
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK-------ELTGGRYTILET 269
P+I P + G+ + C A + +
Sbjct: 185 EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV 244
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ 313
L + V F D+G Y+C A N +GT + + V E H
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHHH 288
Score = 132 bits (333), Expect = 2e-34
Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 10/199 (5%)
Query: 31 HAPKQQYVTRKKEV-ALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKS 88
P + +EV + ++ L C+ L ++ ++G + + +
Sbjct: 86 KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV----LAAPYFTVEPEFINAAEEETVT 144
II+ + D +Y C+ E+ S I L V P +EP + E
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ 205
Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI----TIENLRKSDTGNYGCNAT 200
C A+ + G + P N + + ++ + D G Y C A+
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVAS 265
Query: 201 NSLGYVYKDVYVNVLAHAP 219
N +G + V+
Sbjct: 266 NDVGTRTATMNFQVVESHH 284
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 191 bits (486), Expect = 5e-55
Identities = 56/317 (17%), Positives = 97/317 (30%), Gaps = 45/317 (14%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKS 88
K+++ + VALR +V + +P W K+ R+ + +
Sbjct: 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--A 82
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP----YFTVEPEFINAAEEETVT 144
L + D G+Y C N K SI+L V F P+ + + +
Sbjct: 83 LWLLPALQEDSGTYVCTTRNASYCDKM-SIELRVFENTDAFLPFISYPQILTLSTSGVLV 141
Query: 145 ---FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
+ +I W + + + G + + ++ D G Y C T
Sbjct: 142 CPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTF 201
Query: 202 SLG----YVYKDVYVNVLAH----APEITEAPKDEYTVDGKTVVLTCRVF---GAPKPEV 250
+ + + + + + P I K G + + C+VF G P +
Sbjct: 202 AHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTM 261
Query: 251 NWIHNQKELT-----------GGRYTILETGD------LKITDVAFADSG-EYTCFARNK 292
W G R E + L V D ++ C N
Sbjct: 262 LWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT 321
Query: 293 LGTAQGSGSLTVKEHTH 309
L + TVKEH H
Sbjct: 322 LSFQ--TLRTTVKEHHH 336
Score = 187 bits (476), Expect = 1e-53
Identities = 51/344 (14%), Positives = 90/344 (26%), Gaps = 53/344 (15%)
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK-------ASGL 152
+T + + G A+S + + E E V C AS
Sbjct: 2 DPFTLQPAAHTGAARS---------CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVS 52
Query: 153 PEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVY 211
P + W N + R + + + + D+G Y C N+ +
Sbjct: 53 PRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIE 112
Query: 212 VNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVF-----GAPKPEVNWIHNQKELTGG--- 262
+ V + + + VL C ++ W + L
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK 172
Query: 263 RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---------HITDQ 313
++ T L + DVA D+G Y C Q + + +++ I
Sbjct: 173 FLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISP 232
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIV--WLRGSEPID-------FESEPRFVQSND- 363
+ G T C L+ + W I+ PR S +
Sbjct: 233 LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENN 292
Query: 364 -----YSLTVTKSSELDSG-QYTCRAQTELDFIEAQATLTVQVP 401
L + D + C L TV+
Sbjct: 293 ENYIEVPLIFDPVTREDLHMDFKCVVHNTLS--FQTLRTTVKEH 334
Score = 131 bits (330), Expect = 1e-33
Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 16/220 (7%)
Query: 218 APEITEAPKDEYTVDGKTVVLTC-------RVFGAPKPEVNWIHNQKELT----GGRYTI 266
K E+ ++G+ V L C +P+ + W N T
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE--HTHITDQPEDYEVEAGQS 324
+ G L + DSG Y C RN + S L V E + + S
Sbjct: 78 AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTS 137
Query: 325 ATFRCNAVSDP---SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC 381
C +S+ + I W + S +D ++E L V + D+G Y C
Sbjct: 138 GVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRC 197
Query: 382 RAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV 421
+ + T ++++ ++ T+ +I K +
Sbjct: 198 VLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS 237
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 183 bits (467), Expect = 4e-54
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 10/188 (5%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
A T+ + + E+ F C A G PE + G+ I R V
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKI---ISTQRVVVQKEGVR 57
Query: 181 -RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLT 239
R+TI N D G Y C AT++ G + V + E + G+ +
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 117
Query: 240 CRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA 296
CRV +P P V+W+++ +E+T R+ +L +L+I ++ +D G Y C R +
Sbjct: 118 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGE 177
Query: 297 QGSGSLTV 304
+ V
Sbjct: 178 IDFRDIIV 185
Score = 179 bits (456), Expect = 1e-52
Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 6/177 (3%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGS 101
+ C G P ++ G I + R+ G L I + D G
Sbjct: 13 ELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 72
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH 161
Y C+ ++ G+ + ++ L + F + E C+ S P P + W++
Sbjct: 73 YRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 132
Query: 162 NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG----YVYKDVYVNV 214
+ + ++ N + N + I N+ KSD G Y C + V VNV
Sbjct: 133 HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
Score = 154 bits (391), Expect = 1e-43
Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 7/188 (3%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGD---LK 273
++T + G++ TC G P+ + +++ + R + + G L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 274 ITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV 332
I + D+G Y C A + G Q + L + + + E + G+ A C
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 121
Query: 333 SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
S P ++ WL +E + S+ RF + +L + ++ D G Y C + E
Sbjct: 122 SSP--APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 179
Query: 393 QATLTVQV 400
+ V V
Sbjct: 180 FRDIIVIV 187
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 182 bits (462), Expect = 4e-52
Identities = 45/291 (15%), Positives = 86/291 (29%), Gaps = 24/291 (8%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI- 182
+ P + TVT C +G + W +P G + I
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPP-----SPHWTLYSDGSSSIL 53
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV 242
+ N +TG Y C +++ V A ++ + + +L C +
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL 113
Query: 243 FG-APKPEVNWIH--NQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGS 299
+ V+ + + + Y+ I F S +Y C A G S
Sbjct: 114 TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMG-GRKVMS 172
Query: 300 GSLTVKEHT------HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
S+ +K +T P + G++A C+A S + + +
Sbjct: 173 ISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVN-FDVFLQHNNTKLAIP 231
Query: 354 SEPRFVQSN---DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ F + +L + + +G Y+C A V
Sbjct: 232 QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282
Score = 181 bits (461), Expect = 5e-52
Identities = 53/289 (18%), Positives = 91/289 (31%), Gaps = 26/289 (8%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
V V L C+ G+ W P +P + L + F + G+Y
Sbjct: 15 VVKPGATVTLRCVGNGSV----EWDG---PPSPHWTLYSDGSSSILSTNNATFQNTGTYR 67
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASG-LPEPEIHWVH 161
C S +I L V + V + + E++ C + + E + V
Sbjct: 68 CTEPGDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVR 126
Query: 162 -NGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGYVYKDVY----VNVL 215
G+P+ + P TI + + +Y C+A V V+
Sbjct: 127 VRGRPL---MRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI 183
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGD--- 271
P +T P + + G+ + C +V HN +L + +
Sbjct: 184 PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQK 243
Query: 272 ---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY 317
L + V F +G Y+C A N G S V E + +
Sbjct: 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHHH 292
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 182 bits (463), Expect = 5e-52
Identities = 56/311 (18%), Positives = 89/311 (28%), Gaps = 48/311 (15%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDG--VPINPSDRISQGNYGKSL 89
K V+ E+ +R C TI W KD P++ + + L
Sbjct: 11 EKIILVSSANEIDVRP------CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKL 64
Query: 90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP----YFTVEPEFINAAEEETVTF 145
+ D G Y C V N + I + Y
Sbjct: 65 WFVPAKVEDSGHYYCVVRNSSYCLRI-KISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
Query: 146 EC------KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNA 199
C K P++ W + KP+ N +R+ + N+ + GNY C+A
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPLL--LDNIHFSGVKDRLIVMNVAEKHRGNYTCHA 181
Query: 200 TNSLG----YVYKDVYVNVLA----HAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEV 250
+ + + + + L P I + VD G + L C V G
Sbjct: 182 SYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA 241
Query: 251 NWIHN----------------QKELTGGRYTILETGDLKITDVAFAD-SGEYTCFARNKL 293
W N E + L I+++ +TCFA+N
Sbjct: 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTH 301
Query: 294 GTAQGSGSLTV 304
G L
Sbjct: 302 GIDAAYIQLIY 312
Score = 167 bits (423), Expect = 2e-46
Identities = 45/306 (14%), Positives = 84/306 (27%), Gaps = 38/306 (12%)
Query: 131 EPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRR-KVGPNRITIENLR 188
E + ++ E C + I W + + R ++ +
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70
Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD---GKTVVLTC----- 240
D+G+Y C NS + + + + P + + + L C
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130
Query: 241 -RVFGAPKPEVNWIHNQKELTG-GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG 298
+ P++ W + K L + L + +VA G YTC A Q
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190
Query: 299 SGSLTVKEHTH----------ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE 348
+ ++ T ++ E EV+ G CN W
Sbjct: 191 PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL--SDIAYWKWNGS 248
Query: 349 PIDFESEP-------------RFVQSNDYSLTVTKSSELD-SGQYTCRAQTELDFIEAQA 394
ID + + + L +++ +TC A+ A
Sbjct: 249 VIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308
Query: 395 TLTVQV 400
L V
Sbjct: 309 QLIYPV 314
Score = 122 bits (306), Expect = 1e-30
Identities = 45/228 (19%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 7 SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
S Y + +I + + N A +Q + + L +E F LP+
Sbjct: 84 SSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN-ENNELPKLQ 142
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK---SYSIDLSVL 123
W KD P+ + G LI+ +V +G+YTC S + + I+ L
Sbjct: 143 WYKDCKPLLLDNIHFSGV-KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201
Query: 124 AAPYFTVEPEFINAAEE-------ETVTFECKASGLPEPEIHWVHNGKPISQAPP----- 171
T P ++ A E + C +G +W NG I + P
Sbjct: 202 EENKPTR-PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGED 260
Query: 172 --------NPRRKVGPNRITIENLRKSD-TGNYGCNATNSLGYVYKDV 210
N RR + I + + C A N+ G +
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308
Score = 109 bits (273), Expect = 2e-26
Identities = 29/219 (13%), Positives = 56/219 (25%), Gaps = 21/219 (9%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAP-KPEVNWIHNQKEL----TGGRYTILETGD 271
I + +E V C + K + W + +
Sbjct: 10 EEKIILVSSANE------IDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH----THITDQPEDYEVEAGQSATF 327
L DSG Y C RN + S E+ + ++
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
Query: 328 RCNAVSDPSLK----LSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
C + + + W + +P+ ++ L V +E G YTC A
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPLLLDN--IHFSGVKDRLIVMNVAEKHRGNYTCHA 181
Query: 384 QTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVS 422
+ T ++ + T ++ +
Sbjct: 182 SYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME 220
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 178 bits (453), Expect = 8e-52
Identities = 49/203 (24%), Positives = 76/203 (37%), Gaps = 17/203 (8%)
Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN--PRRKVG 178
+ P FT P +F C+A+G P P+I W GK +S
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 179 PNRITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNVLAH------APEITEAPKDEYTV 231
+ + I+ LR D Y C A+N++G + + VL P I P+ +
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-------RYTILETGDLKITDVAFADSGE 284
+T + C G P PE+ W + + + G L+I +D G+
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181
Query: 285 YTCFARNKLGTAQ-GSGSLTVKE 306
Y C A N GT +L V+
Sbjct: 182 YECVATNSAGTRYSAPANLYVRG 204
Score = 160 bits (407), Expect = 2e-45
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 20/208 (9%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----L 272
P T P D+ V G C+ G P+P++ W K+++ R+ ++E D L
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 273 KITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQS 324
+I + D Y C A N +G S LTV I P+ VE ++
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP----RFVQSNDYSLTVTKSSELDSGQYT 380
AT C A +P I W + P+D + + + +L + +S E D G+Y
Sbjct: 126 ATMLCAASGNP--DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 381 CRAQTELDFIE-AQATLTVQVPLEAPSN 407
C A A A L V+ +
Sbjct: 184 CVATNSAGTRYSAPANLYVRGTKHHHHH 211
Score = 145 bits (367), Expect = 6e-40
Identities = 56/195 (28%), Positives = 76/195 (38%), Gaps = 19/195 (9%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEF-SDQ 99
+ C G P P+ +W+K G ++ G L I+ + D+
Sbjct: 17 TGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLA-------APYFTVEPEFINAAEEETVTFECKASGL 152
Y C SN VGE S S L+VL P + P+ T T C ASG
Sbjct: 77 AIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135
Query: 153 PEPEIHWVHNGKPISQAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYK 208
P+PEI W + P+ + N R K + IE +SD G Y C ATNS G Y
Sbjct: 136 PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS 195
Query: 209 ---DVYVNVLAHAPE 220
++YV H
Sbjct: 196 APANLYVRGTKHHHH 210
Score = 74.1 bits (182), Expect = 4e-15
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN 362
T + T P D +G A+F C A DP + IVW + + + ++ +
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDP--RPKIVWNKKGKKVS-NQRFEVIEFD 58
Query: 363 DYSLTVTK----SSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV 413
D S +V + + D Y C A + I LTV + P F I +
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM 113
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 174 bits (443), Expect = 7e-51
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 14/177 (7%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFSDQ 99
+ + V+L C G P W KDG + D+ +S+ ++ L +K VE SD
Sbjct: 13 TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 72
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIH 158
G Y C+V +G S + L+V P+FTVEP+ + C+A G PEP I
Sbjct: 73 GRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV 132
Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNV 214
W I P+P + + + + C A N G + V++
Sbjct: 133 WWRGTTKIGGPAPSPS--------VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
Score = 152 bits (386), Expect = 6e-43
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 12/188 (6%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI- 182
A P + ++ + V C G+ EP+I WV +G + + I
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 183 --TIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLT 239
+++++ +SD G Y C + + V++ V P T PKD L+
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG-VPFFTVEPKDLAVPPNAPFQLS 119
Query: 240 CRVFGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ- 297
C G P+P + W + + S ++C A N G A
Sbjct: 120 CEAVGPPEPVTIVWWRG-----TTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASS 174
Query: 298 GSGSLTVK 305
+ ++ ++
Sbjct: 175 RTATVHLQ 182
Score = 137 bits (346), Expect = 2e-37
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 17/190 (8%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILE----TGD 271
++ AP G+ V L C V G +P++ W+ + + Y + G
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
L + V +D+G Y C + T LTV+ T +P+D V C
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
AV P ++IVW RG+ I + + S ++C A
Sbjct: 122 AVGPPE-PVTIVWWRGTTKIG--------GPAPSPSVLNVTGVTQSTMFSCEAHNLKGLA 172
Query: 391 EAQ-ATLTVQ 399
++ AT+ +Q
Sbjct: 173 SSRTATVHLQ 182
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 174 bits (443), Expect = 1e-50
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 16/194 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN---- 180
AP E + + E C+ G P P+I W GK + + + K+ +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL---IQSRKYKMSSDGRTH 63
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE---APKDEYTVDGKTVV 237
+T+ + D G Y C ATN +G V + + A P+ + Y G T+
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-TPQFHPGYPLKEKYYGAVGSTLR 122
Query: 238 LTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKITDVAF-ADSGEYTCFARNK 292
L G P P + W H QK L TI T L + +V +G+Y N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 293 LGTAQGSGSLTVKE 306
GT + +++
Sbjct: 183 FGTVDAILDVEIQD 196
Score = 156 bits (395), Expect = 7e-44
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 14/181 (7%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ +L C G PLP W + G + S + +S +L + E D+G
Sbjct: 18 TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGV 77
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVE---PEFINAAEEETVTFECKASGLPEPEIH 158
YTC +N VGE ++ S L + A P F E A T+ G P P +
Sbjct: 78 YTCIATNEVGEVET-SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMT 136
Query: 159 WVHNGKPISQAPPNPRRKVGPN----RITIENL-RKSDTGNYGCNATNSLGYVYKDVYVN 213
W H K + + + + ++N+ RK+ G Y +N G V + V
Sbjct: 137 WFHGQKLL---QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Query: 214 V 214
+
Sbjct: 194 I 194
Score = 154 bits (390), Expect = 3e-43
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 15/193 (7%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
AP I + KD T G+ L+C++ G P P++ W KEL +Y + G L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ---PEDYEVEAGQSATFRCN 330
+ D G YTC A N++G + S L ++ E Y G +
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVTK-SSELDSGQYTCRAQTE 386
+ P ++ W G + + ++ N L + + +G+Y +
Sbjct: 127 YIGRP--VPAMTWFHGQKLL--QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 387 LDFIEAQATLTVQ 399
++A + +Q
Sbjct: 183 FGTVDAILDVEIQ 195
Score = 76.3 bits (188), Expect = 4e-16
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
I + +D + G++A C V P I W R + + ++ S+D ++
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSCQIVGRP--LPDIKWYRFGKEL--IQSRKYKMSSDGRTHT 64
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK 418
LTV + D G YTC A E+ +E + L +Q + + L +
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV 117
Score = 74.0 bits (182), Expect = 3e-15
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLII 91
Y ++K + L ++ G P+P W + S+ I + L++
Sbjct: 104 HPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVM 163
Query: 92 KHVEF-SDQGSYTCEVSNGVGEAKSYSIDLSV 122
K+V+ + G Y ++SN G + +D+ +
Sbjct: 164 KNVQRKTHAGKYKVQLSNVFGTVDA-ILDVEI 194
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 175 bits (445), Expect = 1e-49
Identities = 53/296 (17%), Positives = 85/296 (28%), Gaps = 39/296 (13%)
Query: 44 VALRNKKVELFCIFGGTPLPQT-----IWSKDGVPIN-------------PSDRI----- 80
V L C + T W++ G + S R+
Sbjct: 11 PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAA 70
Query: 81 ----SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
N SL + + D+G+YTC ++S I L VLA P T E + +
Sbjct: 71 RLGAELRNA--SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 128
Query: 137 AAEEETVTFECKA-SGLPEPEIHWVHNGKPI----SQAPPNPRRKVGPNRITIENLRKSD 191
E C + G P +I W + + + + + D
Sbjct: 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVD 188
Query: 192 TGNYGCNATNSLG--YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP- 248
N C + V + V + + + LTC P+P
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT 248
Query: 249 EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
NW L + + + L I V + C N LG Q ++ V
Sbjct: 249 GYNWSTTMGPLP--PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 148 bits (374), Expect = 7e-40
Identities = 48/307 (15%), Positives = 89/307 (28%), Gaps = 43/307 (14%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEP-----EIHWVHNGKPISQA----------PPN 172
P + ++VT C ++ W +G+ S A +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 173 PRRKVGPNR---------ITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLAHAPEIT 222
R + R + + LR D GNY C T G D+++ VLA P+ T
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA-KPQNT 121
Query: 223 EAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILETGD-------LKI 274
+ + C G P ++ W + + +
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH---THITDQPEDYEVEAGQSATFRCNA 331
+ D TC ++ ++ + + ++ AT C+A
Sbjct: 182 VPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA 241
Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
S+P W P+ P F + L + + + C L +
Sbjct: 242 RSNPEP-TGYNWSTTMGPL-----PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295
Query: 392 AQATLTV 398
A+ T+ V
Sbjct: 296 AELTVQV 302
Score = 97.5 bits (242), Expect = 2e-22
Identities = 37/236 (15%), Positives = 66/236 (27%), Gaps = 37/236 (15%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKP-----EVNWIHNQKELT--------------G 261
+ +AP G +V L C + ++ W + + +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 262 GRYTI--------LETGDLKITDVAFADSGEYTC-FARNKLGTAQGSGSLTVKEHTHITD 312
R L L++ + D G YTC F G+ L V T
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 313 QPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS----LT 367
+ + ++ RC + P I W + S+ S +
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRP--PAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180
Query: 368 VTKSSELDSGQYTCRAQ--TELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV 421
+ SS++D TC+ + + LTV P E + +
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEAT 236
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 172 bits (437), Expect = 1e-49
Identities = 41/225 (18%), Positives = 68/225 (30%), Gaps = 28/225 (12%)
Query: 114 KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP 173
+ V TV PE + V C+A+G P + W K I
Sbjct: 7 HHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--- 63
Query: 174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLA--------------HA 218
+ + + D G Y C N+ + + + ++V
Sbjct: 64 -----TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA 278
+I P + + G T+VL C G+P P W N+ LT + V
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYVD 173
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQ 323
G Y C N + + + + P++ E Q
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
Score = 150 bits (381), Expect = 7e-42
Identities = 42/204 (20%), Positives = 56/204 (27%), Gaps = 30/204 (14%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
L + V+L C G P Q W K I + LI V D G Y
Sbjct: 29 AVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------TSELIFNAVHVKDAGFYV 81
Query: 104 CEVSNGVGEAKSYSIDLSVLAAP---------------YFTVEPEFINAAEEETVTFECK 148
C V+N S L V P VEP T+ +C
Sbjct: 82 CRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV 141
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK 208
A G P P W N P++ + + G Y C+ N
Sbjct: 142 AVGSPIPHYQWFKNELPLTHE--------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 193
Query: 209 DVYVNVLAHAPEITEAPKDEYTVD 232
++ + E T D
Sbjct: 194 KKVEIIIDELNNLGHPDNKEQTTD 217
Score = 139 bits (352), Expect = 7e-38
Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 36/230 (15%)
Query: 203 LGYVYKDVYVNVL--AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
+G + + + +IT P+ + + G+ V L CR G P + W KE+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP 60
Query: 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKEHTH---------- 309
G T +L V D+G Y C N L V +
Sbjct: 61 NGN-----TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVS 115
Query: 310 -----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY 364
I +P ++ G + +C AV P W + P+
Sbjct: 116 ESKLQICVEPTSQKLMPGSTLVLQCVAVGSP--IPHYQWFKNELPLT--------HETKK 165
Query: 365 SLTVTKSSELDSGQYTCRAQTELDFIEAQA-TLTVQVP--LEAPSNFTLI 411
V G Y C + D +++ + + L P N
Sbjct: 166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQT 215
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 175 bits (444), Expect = 4e-49
Identities = 60/333 (18%), Positives = 105/333 (31%), Gaps = 37/333 (11%)
Query: 20 IATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI----WSKDGVPIN 75
+A+ Q P Q V L C F I W K
Sbjct: 1 MASMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSK 60
Query: 76 PSDRISQGNYGK--------------------SLIIKHVEFSDQGSYTCEVSNGVGEAKS 115
+ I + G ++ + +E D+G Y CE + +
Sbjct: 61 QNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE 120
Query: 116 YSIDLSVLAAPYFTVEPEFI-----NAAEEETVTFECKAS-GLPEPEIHWVHNGKPI--S 167
++L+V+A P +E +++ + C ++ G P + W K
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY 180
Query: 168 QAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPK 226
Q NP V +R + R++ + C + + + +NV + PE+T
Sbjct: 181 QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ-YEPEVTIEGF 239
Query: 227 DEYTV-DGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
D V LTC+ P E +W L G + ++ +G
Sbjct: 240 DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-VEAQNRTLFFKGPINYSLAGT 298
Query: 285 YTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY 317
Y C A N +GT G + + E + +
Sbjct: 299 YICEATNPIGTRSGQVEVNITEAAALEHHHHHH 331
Score = 135 bits (341), Expect = 4e-35
Identities = 44/312 (14%), Positives = 78/312 (25%), Gaps = 41/312 (13%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE----IHWVHNGKPISQAPPNPRRKVGPNR 181
+ + V C + + W + Q +G +
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 182 -------------------ITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLAHAPEI 221
I + L D G Y C T G + + V+A
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 222 TEAPKDEYTV----DGKTVVLTCRV-FGAPKPEVNWIHN------QKELTGGRYTILETG 270
E + D K +V TC G P V+W +E+ T+
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRC 329
++ A C + + S +L V+ +T + D C
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
A ++P W + + N + +G Y C A +
Sbjct: 255 KADANPPA-TEYHWTTLNGSL----PKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGT 309
Query: 390 IEAQATLTVQVP 401
Q + +
Sbjct: 310 RSGQVEVNITEA 321
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 169 bits (430), Expect = 1e-48
Identities = 45/205 (21%), Positives = 73/205 (35%), Gaps = 22/205 (10%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ---------APPNP 173
+ + + E V C SG P + W + ++ A
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA-PEITEAPKDEYTVD 232
R P IT +++ + DTG Y C + G Y +V V ++ P
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 233 GKTVVLTCRV-FGAPKPEVNWIHNQKELT-----------GGRYTILETGDLKITDVAFA 280
G VLTC G+P E W + + TG+L ++ +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 281 DSGEYTCFARNKLGTAQGSGSLTVK 305
D+GEY+C ARN GT S ++ ++
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRME 206
Score = 144 bits (365), Expect = 8e-40
Identities = 44/197 (22%), Positives = 60/197 (30%), Gaps = 22/197 (11%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG----------NYGKSLIIKH 93
N V+L C + G P+ W D + + K
Sbjct: 15 RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 94 VEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS-G 151
V D G+YTC VS G + + L VL P +A C G
Sbjct: 75 VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDG 134
Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRI--------TIENLRKSDTGNYGCNATNSL 203
P E W +G + P + R + + + L SDTG Y C A N
Sbjct: 135 SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY 194
Query: 204 GYVYKDVYVNVLAHAPE 220
G V + A E
Sbjct: 195 GTPMTSNAVRM--EAVE 209
Score = 137 bits (347), Expect = 3e-37
Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 25/206 (12%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT------------GGRYT 265
+ + + + + V L+C G P V W +Q + T
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGS--LTVKEHTHITDQPEDYEVEAGQ 323
+ V D+G YTC + G + G L V G
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123
Query: 324 SATFRCNAVS-DPSLKLSIVWLRGSEPID--------FESEPRFVQSNDYSLTVTKSSEL 374
A C+ P W + + F + + L S
Sbjct: 124 RAVLTCSEQDGSP--PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 375 DSGQYTCRAQTELDFIEAQATLTVQV 400
D+G+Y+C A+ + ++
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 62.7 bits (152), Expect = 3e-11
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCI-FGGTPLPQTIWSKDGVPINPSDRISQGNYGKS- 88
P + A + L C G+P + W KDG+ + + + ++ S
Sbjct: 105 LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 89 --------LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
L+ + SD G Y+CE NG G + S + +
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT-SNAVRM 205
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 179 bits (455), Expect = 9e-48
Identities = 86/635 (13%), Positives = 171/635 (26%), Gaps = 54/635 (8%)
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
+ K + P W +G P + I + T+
Sbjct: 93 LLNVYVKVNNGPLGNPIWNISGDPTRT--------WNRAELAISTFWPNFYQVIFEVITS 144
Query: 202 SLGYVYKDVYVNVLAHAPEIT---EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
V VL H T ++ G+ C G +
Sbjct: 145 GHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGID 204
Query: 259 LTGGRYTILE-------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
+ ++ + + D+G+Y C R + G + + V + +
Sbjct: 205 VRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVP 264
Query: 312 DQPEDYEVEAGQSATFR--CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
P + N+++ ++ + + + S +
Sbjct: 265 IAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR---QPVDSTSYKIG 321
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQV------PLEAPSNFTLIQVIDAKKAVVSW 423
+ + + ++ P+ P + + +++ + W
Sbjct: 322 HLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLE-VVEVKSRQITIRW 380
Query: 424 NPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTE--VDKFVPASKNFARVL 481
P R H V + G+ +RE + E++ + + P + +++
Sbjct: 381 EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLI 440
Query: 482 AFNGAYNGPPSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIK 540
N E+I T E +PG V +L+W +P Q GV+ Y+I
Sbjct: 441 LMNPEGRKESQELI-VQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEIT 499
Query: 541 YQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF 598
Y++V + + T GL P T Y + T G G + F
Sbjct: 500 YKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF 559
Query: 599 Y----VPFKNPDNVEGR-GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQD 653
P +E T N + + P AP Y+I
Sbjct: 560 TTKISAPSMPAYELETPLNQTDNTVTVMLK--PAHSRGAPVSVYQIVVEEERPRRTKKTT 617
Query: 654 DVLDWRQSEL--VLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVP 711
++L + A+ Q Y D + + + G++ T P
Sbjct: 618 EILKCYPVPIHFQNASLLNSQYY----FAAEFPADSLQAAQPFTI--GDNKTYNGYWNTP 671
Query: 712 ASKN---FARVLAFNGAYNGPPSEIISFVTPEGGT 743
A + A + + T T
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAAT 706
Score = 169 bits (430), Expect = 2e-44
Identities = 71/529 (13%), Positives = 141/529 (26%), Gaps = 65/529 (12%)
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
+ + + +V P W ++G +L I+
Sbjct: 86 KSNSPPGLLNVYVKVNNGPLGNPIW-----NISGDPTRTWNRAELAISTFWPNFYQVIFE 140
Query: 288 FARNKLGTAQGSGSLTVKEHTHITD----QPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
+ + V H + ++ EV AGQ ATF+C+A+ +
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWL 200
Query: 344 LR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ E + + S V +++ D+G+Y C +TE + V
Sbjct: 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE 260
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
P + + A + N S G +V+ T +
Sbjct: 261 PPVPIAPPQLASVGATYLWIQLNANSING-DGPIVAREVEYCTASGSWND-----RQPVD 314
Query: 462 STTTEVDKFVPASKNFARVLAFN--GAYNGPPSEIISFVTPEGVP-GTVQSLEAIPLGSS 518
ST+ ++ P ++ VL G P + T P + LE + + S
Sbjct: 315 STSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSR 374
Query: 519 AFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576
++W + Y G + + E + + ++ + + L P T
Sbjct: 375 QITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQ-EQVREEVSWDTENSHPQHTITNLSPYT 433
Query: 577 KYRIHLAGYTKAGDGAESKYLFY----VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNA 632
+ L G + + +P P + + + W +
Sbjct: 434 NVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWR--EPTQTYG 491
Query: 633 PHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIR 692
Y I ++ ++ + R
Sbjct: 492 VITLYEITYKAVSSFDPEIDLSNQSGR--------------------------------- 518
Query: 693 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
+ G T P + + A GPP+ F T
Sbjct: 519 --VSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTKIS 564
Score = 164 bits (417), Expect = 8e-43
Identities = 83/613 (13%), Positives = 146/613 (23%), Gaps = 81/613 (13%)
Query: 53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
++ PL IW+ G +P+ ++ L I + +++G
Sbjct: 96 VYVKVNNGPLGNPIWNISG---DPTRTWNRA----ELAISTFWPNFYQVIFEVITSGHQ- 147
Query: 113 AKSYSIDLSVLAAPYFT-----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS 167
+ID + T + + + + TF+C A G G +
Sbjct: 148 -GYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVR 206
Query: 168 QAPPNPRRKVGPNRI----TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
AP + R + N K D G Y C G + V+ P
Sbjct: 207 DAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA 266
Query: 224 APK-DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADS 282
P+ + L P V +G
Sbjct: 267 PPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPD 326
Query: 283 GEYT--CFARNKLGTAQGSGSLTVKEHTHITD---QPEDYEVEAGQSATFR-------CN 330
EY GS ++ T D P EV +S N
Sbjct: 327 TEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYN 386
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
S L++ + + E + + T ++ + +
Sbjct: 387 VTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG 446
Query: 391 EAQ-ATLTVQVPLEAPS---NFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEK 446
+ L VQ + P ++ +K + W P G Y++
Sbjct: 447 RKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWRE--PTQTYGVITLYEITYKAVS 504
Query: 447 DGEGSI-----RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
+ I + G T P + + A GPP+ F T
Sbjct: 505 SFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTKI 563
Query: 502 GVPGTVQSLEAIPLGSSA--FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
P PL + + + Y+I + + + E L
Sbjct: 564 SAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCY 623
Query: 560 SDPTTTSAKL------------------------------------AGLEPSTKYRIHLA 583
P L P YRI+
Sbjct: 624 PVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQ 683
Query: 584 GYTKAGDGAESKY 596
++A +
Sbjct: 684 AASRANGETKIDC 696
Score = 61.3 bits (148), Expect = 8e-10
Identities = 83/617 (13%), Positives = 147/617 (23%), Gaps = 111/617 (17%)
Query: 17 LNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG----- 71
+ V+ + + + + V + C G + G
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNA-------GQFATFQCSAIGRTVAGDRLWLQGIDVRD 207
Query: 72 VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVE 131
P+ S + S + + D G Y C + G S +L V P
Sbjct: 208 APLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAP 267
Query: 132 PEFINAAEEE-TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS 190
P+ + + + P + S N R+ V I +L
Sbjct: 268 PQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASG-SWNDRQPVDSTSYKIGHLDPD 326
Query: 191 DTGNYGCNATNSLGYVY----KDVYVNVLAHAP---------------EIT---EAPKDE 228
T + P +IT E
Sbjct: 327 TEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYN 386
Query: 229 YT-VDGKTVVLTCRVFGAPKPEVNW-IHNQKELTGGRYTILETGDLKITDVAFADSGEYT 286
T + + + +V + E + ++TI T T+V+
Sbjct: 387 VTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTI--TNLSPYTNVSV------K 438
Query: 287 CFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS------ 340
N G + S + T ED + + + L
Sbjct: 439 LILMNPEGRKE---SQELIVQT-----DEDLPGAVPTE--SIQGSTFEEKIFLQWREPTQ 488
Query: 341 ---------IVWLRGSE-----PIDFESEPRFVQSNDYSLTVTKSSELDSG-QYTCR--A 383
I + S + +S N+ L G Y+ A
Sbjct: 489 TYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFF---GLYPGTTYSFTIRA 545
Query: 384 QTEL---DFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKV 440
T Q T + P V P S Y++
Sbjct: 546 STAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKP--AHSRGAPVSVYQI 603
Query: 441 QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 500
E+ TTE+ K P +F N Y +
Sbjct: 604 VVEEERPRR-----------TKKTTEILKCYPVPIHFQNASLLNSQY---------YFAA 643
Query: 501 EGVPGTVQSLEAIPLGSSAFYLK-WVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
E ++Q+ + +G + Y W P P Y+I +Q+ ++ +
Sbjct: 644 EFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYK---SYRIYFQAASRANGETKIDCVQVA 700
Query: 560 SDPTTTSAKLAGLEPST 576
+ T + E T
Sbjct: 701 TKGAATPKPVPEPEKQT 717
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 164 bits (418), Expect = 3e-47
Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 14/190 (7%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVH-NGKPISQAPPNPRRKVGPN--- 180
+ P + E+ F C+ +G + +I W NG+ +S P R V N
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS--PNQQRISVVWNDDD 60
Query: 181 --RITIENLRKSDTGNYGCNATNSLGYVYK-DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
+TI N D G Y C T G + V V + AP + +G+ V
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAV 119
Query: 238 LTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
+ C V + P + W H +++ R+ +L L+I + D G Y C R
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 295 TAQGSGSLTV 304
+ V
Sbjct: 180 GEINFKDIQV 189
Score = 159 bits (404), Expect = 2e-45
Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 11/191 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKEL---TGGRYTIL----ETG 270
++ P G++ C+V G K +++W E R +++ ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
L I + D+G Y C + GT + ++ + + + P E + G+ A C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
+ VS +I+W + + + RF+ ++ L + + D G Y C +
Sbjct: 123 DVVSSL--PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 390 IEAQATLTVQV 400
+ V V
Sbjct: 181 EINFKDIQVIV 191
Score = 159 bits (404), Expect = 2e-45
Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 10/180 (5%)
Query: 44 VALRNKKVELFCIFGGTPLPQTI-WSK-DGVPINPSDR----ISQGNYGKSLIIKHVEFS 97
+ C G + I W +G ++P+ + + + +L I +
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
D G Y C V+ G ++++ + F P E E C P I
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 158 HWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLG--YVYKDVYVNV 214
W H G+ + + R V N + I ++K+D G Y C +KD+ V V
Sbjct: 133 IWKHKGRDV-ILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 164 bits (416), Expect = 2e-46
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 9/196 (4%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
+ L AP N + ++K +W P S G GY+V+ W + D E L
Sbjct: 3 HMDLGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLLDSK 56
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSS 518
+ E+ P +V A+ GP S ++S T + VP L + S+
Sbjct: 57 ---VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSST 113
Query: 519 AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY 578
L W +P + NG + Y++ Y V + + +P + L S Y
Sbjct: 114 VTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPY 173
Query: 579 RIHLAGYTKAGDGAES 594
R + AG G E
Sbjct: 174 RYTVKARNGAGWGPER 189
Score = 84.1 bits (208), Expect = 2e-18
Identities = 47/207 (22%), Positives = 73/207 (35%), Gaps = 24/207 (11%)
Query: 501 EGVP-GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
+ G Q+ A GS + W P+G MGY++KY + E ++
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNW---LPPSGKPMGYRVKYWIQGDS------ESEAHL 52
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF-----YVPFKNPDNVEGRGST 614
D S +L L P Y + + Y G+G S + VP P + +
Sbjct: 53 LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVS 111
Query: 615 PNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEA----WNQDDVLDWRQSELVLANQPT 670
+SW P E N Y + + N + V + + L++ N
Sbjct: 112 STVTQLSWAE-PA-ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRE 169
Query: 671 FQPYEIKVVQTWTEKDGEGSIRELIVN 697
QPY V+ G G RE I+N
Sbjct: 170 SQPYRYT-VKARNGA-GWGPEREAIIN 194
Score = 50.2 bits (120), Expect = 7e-07
Identities = 16/142 (11%), Positives = 33/142 (23%), Gaps = 48/142 (33%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
+ P N + + + +W + YR+ + E
Sbjct: 4 MDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSE----------- 47
Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
E + + + E+ P +V
Sbjct: 48 --------------------------------SEAHLLDSKVPSVELTNLYPYCDYEMKV 75
Query: 720 LAFNGAYNGPPSEIISFVTPEG 741
A+ GP S ++S T +
Sbjct: 76 CAYGAQGEGPYSSLVSCRTHQE 97
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 162 bits (412), Expect = 3e-46
Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 12/192 (6%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE--IHWVHNGKPISQAPPNPRRKVGPN-RI 182
P+ E + E + + C + W+ N P+ R N +
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL---------AHAPEITEAPKDEYTVDG 233
I N+ SD GNY C ++ L + +I KD Y + G
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
+ V L C G P P++ W + + LKI ++ D G Y C A N
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIR 188
Query: 294 GTAQGSGSLTVK 305
G + + V+
Sbjct: 189 GKDKHQARIYVQ 200
Score = 137 bits (347), Expect = 2e-37
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 16/186 (8%)
Query: 44 VALRNKKVELFC-IFGGTPLPQTI-WSKDGVPINPS--DRISQGNYGKSLIIKHVEFSDQ 99
K + L C P + W + P+ + R +L I +VE SD+
Sbjct: 19 RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDK 78
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVL---------AAPYFTVEPEFINAAEEETVTFECKAS 150
G+Y+C VS+ +S + ++ V+ + + A + VT EC A
Sbjct: 79 GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFAL 138
Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210
G P P+I W +P+ P + I N++ D G Y C A N G
Sbjct: 139 GNPVPDIRWRKVLEPM---PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQA 195
Query: 211 YVNVLA 216
+ V A
Sbjct: 196 RIYVQA 201
Score = 128 bits (324), Expect = 3e-34
Identities = 43/197 (21%), Positives = 69/197 (35%), Gaps = 21/197 (10%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE--VNWIHNQKELT----GGRYTILETGDL 272
P E + +GK +VL C + W+ N+ + R+ G+L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTV----------KEHTHITDQPEDYEVEAG 322
I +V +D G Y+CF + T I Q +D G
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 323 QSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR 382
Q+ T C A+ +P I W + EP+ + ++ L + D G Y C
Sbjct: 129 QNVTLECFALGNP--VPDIRWRKVLEPMPST---AEISTSGAVLKIFNIQLEDEGIYECE 183
Query: 383 AQTELDFIEAQATLTVQ 399
A+ + QA + VQ
Sbjct: 184 AENIRGKDKHQARIYVQ 200
Score = 94.2 bits (234), Expect = 4e-22
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 7 SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
++ I L I + + P V K AL + V L C G P+P
Sbjct: 91 TKSVFSKFIPLIPIPERTT----KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIR 146
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA 124
W K P+ + IS G L I +++ D+G Y CE N G+ K + V A
Sbjct: 147 WRKVLEPMPSTAEIS--TSGAVLKIFNIQLEDEGIYECEAENIRGKDKH-QARIYVQA 201
Score = 67.2 bits (164), Expect = 7e-13
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPRFVQSNDYSLTV 368
++ + V+ G+ C+ LS WL P+ + RFV + +L +
Sbjct: 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYI 70
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
D G Y+C + + +P+ +
Sbjct: 71 ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTT 109
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 166 bits (420), Expect = 5e-46
Identities = 46/308 (14%), Positives = 88/308 (28%), Gaps = 40/308 (12%)
Query: 32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI---------WSKDGVPINPSDRISQ 82
P + ++A + C L W K G P +R +
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK 87
Query: 83 GNYGKSLIIKHVEFSD-QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
L I + +D Y C V+ G+ + + P E + ++
Sbjct: 88 NG---DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKY 144
Query: 142 TVTFECK-ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
+ C I W N + + + + I N D+G Y C
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELI--IDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202
Query: 201 NSLGYVYKDVYVNVLA---------HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-- 249
+ D+ V+ H ++ PK T+ G+ +TC
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI-GEPANITCTAVSTSLLVDD 261
Query: 250 --VNWIHNQKELTGGRYTI---------LETGDLKITDVAFADSGE-YTCFARNKLGTAQ 297
++W + + G + + + L +V G YTC N
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321
Query: 298 GSGSLTVK 305
+ ++ ++
Sbjct: 322 LTTTVVLE 329
Score = 166 bits (420), Expect = 6e-46
Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 35/332 (10%)
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG------ 151
D + E N + + D L AA E + +C
Sbjct: 3 DIENEITEFFNKMRDTLPAK-DSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSH 61
Query: 152 ---LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGN-YGCNATNSLGYVY 207
+ ++W GK R+V + I N +D+ Y C T G
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPL----NRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCV 117
Query: 208 KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKEL-TGGRYT 265
+ + + + P + T D + L C + + W N +EL G
Sbjct: 118 QGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY 177
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV---------KEHTHITDQPED 316
+L I + DSG Y C+ + ++ ++H
Sbjct: 178 SQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPK 237
Query: 317 YEVEAGQSATFRCNAVSDPSLK--LSIVWLR-GSEPIDFESEPRFVQSNDY-----SLTV 368
V G+ A C AVS L + I W I + + ++ +L
Sbjct: 238 INVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYF 297
Query: 369 TKSSELDSGQ-YTCRAQTELDFIEAQATLTVQ 399
+E G YTCR T+ ++
Sbjct: 298 ENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 104 bits (259), Expect = 2e-24
Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 15/189 (7%)
Query: 225 PKDEYTVDGKTVVLTCRVFG---------APKPEVNWIHNQKELTGGRYTILETGDLKIT 275
++ G+ C VNW K + + GDL I
Sbjct: 36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV-KNGDLWIA 94
Query: 276 DVAFADSGE-YTCFARNKLG-TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS 333
+ DS Y C K G QG +++ + + C +
Sbjct: 95 NYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCG-IL 153
Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ 393
+I W + ++ + ++ QS +L + DSG+Y C + I+
Sbjct: 154 YAKHYNNITWYKNNQELI-IDGTKYSQSGQ-NLIIHNPELEDSGRYDCYVHYDDVRIKND 211
Query: 394 ATLTVQVPL 402
++ L
Sbjct: 212 IVVSRCKIL 220
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 164 bits (417), Expect = 5e-46
Identities = 51/284 (17%), Positives = 82/284 (28%), Gaps = 35/284 (12%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ-GNYGKSLIIKHVEFSDQGSYTCEVSNG 109
L C G P+ +W + +Q G + L + ++ D G Y C ++
Sbjct: 18 FVLTCS-GSAPV---VWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS 73
Query: 110 VGEAKSYSIDLSVLAAPYF------TVEPEFINAAEEETVTFECKASGLPEPEIHWVH-N 162
G L + E FI E +T C+ + P+ +
Sbjct: 74 RGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKK 132
Query: 163 GKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY--VNVLAHAPE 220
G P + +R + +Y C T V D Y + +
Sbjct: 133 GDVALPVPYDHQRGF---------SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSIN 183
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---------GGRYTILETGD 271
++ G+ + L C V G W + +KE
Sbjct: 184 VSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSI 243
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSL--TVKEHTHITDQ 313
L I DSG YTC + Q ++ TV E H
Sbjct: 244 LHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHHH 287
Score = 144 bits (365), Expect = 7e-39
Identities = 43/273 (15%), Positives = 81/273 (29%), Gaps = 23/273 (8%)
Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
T C S + W + Q + + +T+ NL DTG Y C
Sbjct: 16 STFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHN 71
Query: 201 NSLGYVYKD---VYVNVLAHAPEITEAPKDE---YTVDGKTVVLTCRVFGAPKPEVNWIH 254
+S G + +Y+ V +E + + + + CRV P+ V
Sbjct: 72 DSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHE 130
Query: 255 NQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HIT 311
G + D + + Y C + +++
Sbjct: 131 K-----KGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVS 185
Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY----SLT 367
V G++ T C + + + + R E F+ Y L
Sbjct: 186 VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILH 245
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
+ + DSG YTC ++ + + + + V
Sbjct: 246 IPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Score = 85.5 bits (211), Expect = 2e-18
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 26/193 (13%)
Query: 225 PKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE---TGDLKITDVAFA 280
P E ++ T VLTC V W +E + + L +T++
Sbjct: 6 PGPELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61
Query: 281 DSGEYTCFARNKLGTAQGSGS---LTVKE----HTHITDQPEDYEVEAGQSATFRCNAVS 333
D+GEY C + G + V + + + T C V+
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR-VT 120
Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ 393
DP +L + + D+ + + Y C+ +++
Sbjct: 121 DP--QLVVTLHEKKGDVALPV------PYDHQRGFSGIF--EDRSYICKTTIGDREVDSD 170
Query: 394 ATLTVQVPLEAPS 406
A ++ + + +
Sbjct: 171 AYYVYRLQVSSIN 183
Score = 62.4 bits (151), Expect = 1e-10
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 8/120 (6%)
Query: 19 VIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG----VPI 74
V + + + + V + V + + + L CI G + W+ +
Sbjct: 167 VDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226
Query: 75 NPSDRISQGNYGK---SLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYFTV 130
P L I E D G+YTC V+ V + + +I+++V+ + +
Sbjct: 227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHH 286
Score = 55.1 bits (132), Expect = 3e-08
Identities = 37/258 (14%), Positives = 80/258 (31%), Gaps = 30/258 (11%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
+T + + + C+ + +VW R S+ E + LT+T
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSA------PVVWERMSQEPPQEMAKAQDGTFSSVLTLT 56
Query: 370 KSSELDSGQYTCRAQTELDFIEAQ-ATLTVQVP------LEAPSNFTLIQVIDAKKAVVS 422
+ LD+G+Y C + L + VP L + I + + + +
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIP 116
Query: 423 WNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDK-------FVPASK 475
PQ V T EK G+ ++ + + + + + +
Sbjct: 117 CRVTDPQ--------LVV-TLHEKKGDVAL-PVPYDHQRGFSGIFEDRSYICKTTIGDRE 166
Query: 476 NFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLM 535
+ + ++ V G +L I +G+ +W P + +G L+
Sbjct: 167 VDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226
Query: 536 GYKIKYQSVKGTKVGPLL 553
+ + +L
Sbjct: 227 EPVTDFLLDMPYHIRSIL 244
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 160 bits (407), Expect = 1e-45
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 20/186 (10%)
Query: 44 VALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRIS-----------QGNYGKSLII 91
R L C + P+ W +DG + +D L I
Sbjct: 13 TGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRI 72
Query: 92 KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG 151
++ SD G Y C V G S + + PYF EPE A C+A G
Sbjct: 73 TSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQG 132
Query: 152 LPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD- 209
PEP ++ W+ + P++ AP + ++ + + L + T ++ C A N+ G
Sbjct: 133 PPEPVDLLWLQDAVPLATAPGHGPQRS----LHVPGL--NKTSSFSCEAHNAKGVTTSRT 186
Query: 210 VYVNVL 215
+ VL
Sbjct: 187 ATITVL 192
Score = 136 bits (345), Expect = 4e-37
Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 18/193 (9%)
Query: 126 PYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-- 182
F P I A T T C+ PE+HW+ +G+ + A +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 183 --------TIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDG 233
I +L+ SDTG Y C YV + P E P+D
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-LPYFLEEPEDRTVAAN 121
Query: 234 KTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
L+C+ G P+P ++ W+ + L L + + + ++C A N
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-HGPQRSLHVPGL--NKTSSFSCEAHNA 178
Query: 293 LGTAQ-GSGSLTV 304
G + ++TV
Sbjct: 179 KGVTTSRTATITV 191
Score = 130 bits (328), Expect = 6e-35
Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 22/198 (11%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKEL-------------TGGRY 264
P + G T L C++ PEV+W+ + + L +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQPEDYEVEAGQ 323
+ L+IT + +D+G+Y C T G + ++ + ++PED V A
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
C A P + ++WL+ + P+ SL V + + ++C A
Sbjct: 123 PFNLSCQAQGPPE-PVDLLWLQDAVPLA----TAPGHGPQRSLHVPGLN--KTSSFSCEA 175
Query: 384 QTELDFIEAQATLTVQVP 401
++ +P
Sbjct: 176 HNAKGVTTSRTATITVLP 193
Score = 60.3 bits (146), Expect = 1e-10
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE----------SE 355
E + P + G + T RC + WLR + ++ +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGE-PPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 356 PRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTVQVP---LEAPSNFTL 410
+ L +T D+GQY C +Q + ++ LE P + T+
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTV 118
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 160 bits (406), Expect = 1e-45
Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 18/194 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH--WVHNGKPISQAPPNPRRKVGPNR 181
P E I VT +C + ++ W NG ++ R+
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT----RKNASNME 57
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR 241
I R D+G Y C + + + + V A AP+IT + E +G+ ++ C+
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA-APDITGHKRSENKNEGQDAMMYCK 115
Query: 242 VFGAPKPEVNWIHNQKELT------GGRYTILETGD---LKITDVAFA-DSGEYTCFARN 291
G P PE W + + GR+ I+ + L I ++ D GEY C A N
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175
Query: 292 KLGTAQGSGSLTVK 305
+G+A S L V+
Sbjct: 176 SIGSASVSTVLRVR 189
Score = 158 bits (402), Expect = 4e-45
Identities = 44/180 (24%), Positives = 65/180 (36%), Gaps = 14/180 (7%)
Query: 44 VALRNKKVELFCIFGGTPLPQT--IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
+ V L C + W+K+GV + + + + I D G
Sbjct: 14 IRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM---EYRINKPRAEDSGE 70
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH 161
Y C V + V K+ + + V AAP T N E + CK+ G P PE W
Sbjct: 71 YHC-VYHFVSAPKA-NATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK 128
Query: 162 NGKPISQAPPNPRRKV------GPNRITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNV 214
+ + N + + I NL+ D G Y CNATNS+G + V
Sbjct: 129 KENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 144 bits (366), Expect = 5e-40
Identities = 43/192 (22%), Positives = 64/192 (33%), Gaps = 13/192 (6%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN--WIHNQKELTGGRYTILETGDLKIT 275
P I + + V L C + + + W N ELT R + +I
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-NASNMEYRIN 61
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
DSGEY C + + + + ++ VK IT GQ A C +V P
Sbjct: 62 KPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP 120
Query: 336 SLKLSIVWLRGSEPIDFE---SEPRFVQSND---YSLTVTK-SSELDSGQYTCRAQTELD 388
+W + + E S RF N L + D G+Y C A +
Sbjct: 121 --HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
Query: 389 FIEAQATLTVQV 400
L V+V
Sbjct: 179 SASVSTVLRVRV 190
Score = 78.4 bits (193), Expect = 7e-17
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
I E ++ T +CN S + W + + + +++ +
Sbjct: 5 RIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK----NASNMEYRI 60
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
K DSG+Y C + +A AT+ V+
Sbjct: 61 NKPRAEDSGEYHCVY-HFVSAPKANATIEVKAA 92
Score = 61.8 bits (150), Expect = 4e-11
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY-------GKSLI 90
++ E + ++C G P P+ +W K + S G + L
Sbjct: 97 GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELN 156
Query: 91 IKHVEF-SDQGSYTCEVSNGVGEAKSYSIDLSV 122
I +++ D G Y C +N +G A S S L V
Sbjct: 157 IVNLQITEDPGEYECNATNSIGSA-SVSTVLRV 188
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 162 bits (411), Expect = 2e-45
Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 32/283 (11%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITI 184
T++P +++ +EETVT C+ LP W NG + P+ I
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS---------YRI 52
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF- 243
+ +D+G Y C S + + + + + +T G+ + L C +
Sbjct: 53 TSASVNDSGEYRCQRGLSGRS--DPIQLEIH-RGWLLLQVSSRVFTE-GEPLALRCHAWK 108
Query: 244 GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLT 303
V + N K +L I + +G Y C K S+T
Sbjct: 109 DKLVYNVLYYRNGKAFKFFH----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164
Query: 304 VKEHTH--ITDQPEDYEVEAGQSATFRCNAVSDPS---LKLSIVWLRGSEPIDFESEPRF 358
VKE + + + G T C L+L + GS+ +
Sbjct: 165 VKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG------ 218
Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTVQV 400
++ + + DSG Y C A TE + + L +QV
Sbjct: 219 -RNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
Score = 156 bits (395), Expect = 4e-43
Identities = 52/260 (20%), Positives = 79/260 (30%), Gaps = 26/260 (10%)
Query: 51 VELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
V L C P + W +G S S I +D G Y C+
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNGTATQTSTP--------SYRITSASVNDSGEYRCQRGLS 70
Query: 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQ 168
+S I L + ++ E E + C A + + NGK
Sbjct: 71 ---GRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF 126
Query: 169 APPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV--LAHAPEITEAPK 226
N + +TI S G Y C+ Y + V V L AP + A
Sbjct: 127 FHWN-------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLN-ASV 178
Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG-DLKITDVAFADSGEY 285
++G V L+C + ++ + T + +I DSG Y
Sbjct: 179 TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLY 238
Query: 286 TCFARNKLGTAQ-GSGSLTV 304
C A + G S L +
Sbjct: 239 WCEAATEDGNVLKRSPELEL 258
Score = 111 bits (280), Expect = 1e-27
Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 24/192 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDV 277
IT P +TV L C V P W N G T T +IT
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN------GTATQTSTPSYRITSA 55
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSD 334
+ DSGEY C S ++ H + Q G+ RC+A D
Sbjct: 56 SVNDSGEYRCQRGL------SGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD 109
Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
+ ++++ R + F + +LT+ K++ +G Y C + + A
Sbjct: 110 KLV-YNVLYYRNGKAFKF-------FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161
Query: 395 TLTVQVPLEAPS 406
++TV+ AP
Sbjct: 162 SVTVKELFPAPV 173
Score = 106 bits (265), Expect = 1e-25
Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 23/189 (12%)
Query: 38 VTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
+ V + + L C + + ++ ++G +L I
Sbjct: 87 LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW------NSNLTILKTNI 140
Query: 97 SDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP 155
S G+Y C S+ + L E VT C+ L +
Sbjct: 141 SHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQR 200
Query: 156 EIHWVH-----NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK-- 208
++ K + + I R+ D+G Y C A G V K
Sbjct: 201 PGLQLYFSFYMGSKTLRGRNTSS-------EYQILTARREDSGLYWCEAATEDGNVLKRS 253
Query: 209 -DVYVNVLA 216
++ + VL
Sbjct: 254 PELELQVLG 262
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 167 bits (424), Expect = 3e-45
Identities = 51/392 (13%), Positives = 100/392 (25%), Gaps = 44/392 (11%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQT--IWSKDGVPINPSDRISQGNYG 86
P++ + K + L C + GG P + + + + +
Sbjct: 83 YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE-PAE 141
Query: 87 KSLIIKHVEFSDQGSYTCEVSNGVGEA-------KSYSIDLSVLAAPYFTVEPEFINAAE 139
+ + +++C + S L P + E
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201
Query: 140 EET-VTFECKASGL---PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY 195
+T T C GL E ++H + ++ T
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261
Query: 196 GCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN 255
C V + + P +G V + C K +N +
Sbjct: 262 TCAVILGNQSQETLQTVTIYSF-PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPA 320
Query: 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH------ 309
Q + L + + ++C A ++ + T +
Sbjct: 321 QPLGPRAQ--------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 372
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
D P ++ T C A +P +L L+ E V +
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELK--CLKDGTFPLPIGESVTVTRDL------ 424
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
G Y CRA++ + + T+ V P
Sbjct: 425 ------EGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 138 bits (348), Expect = 3e-35
Identities = 48/394 (12%), Positives = 101/394 (25%), Gaps = 45/394 (11%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
K + R V + C P+ + + GN K + +V +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELLLPGNNRKVYELSNV--QEDS 61
Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASG---LPEPE 156
C + + L+V P + P + +T C+ G
Sbjct: 62 QPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLT 120
Query: 157 IHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ + K + + P T+ R N+ C L +++ N A
Sbjct: 121 VVLLRGEKELKREPAVGEPAEV--TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 217 HAPEITEAP--------KDEYTVDGKTVVLTCRVFG---APKPEVNWIHNQKEL------ 259
T + C + G + +V+ + L
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238
Query: 260 TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
++ + + D + TC + + ++T+ EV
Sbjct: 239 GNDSFSAKASVSVTAED---EGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 295
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQY 379
G T +C A + L+ + L + + E + +
Sbjct: 296 SEGTEVTVKCEAHPRAKVTLN--GVPAQPL-----------GPRAQLLLKATPEDNGRSF 342
Query: 380 TCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV 413
+C A E+ T ++ +
Sbjct: 343 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDC 376
Score = 114 bits (285), Expect = 4e-27
Identities = 37/287 (12%), Positives = 70/287 (24%), Gaps = 20/287 (6%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
+V P + +V C S + + P G NR E
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPMLLGI------ETPLPKKELLLPGNNRKVYELSN 56
Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG---A 245
+ C + G ++ V + AP + GK + L C+V G
Sbjct: 57 VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116
Query: 246 PKPEVNWIHNQKELTGGRYTI-LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
V + +KEL + ++C L
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
Query: 305 KE---------HTHITDQPEDYEVEAGQSATFRCNAVSD-PSLKLSIVWLRGSEPIDFES 354
+E T C+ P + + G + ++
Sbjct: 177 SAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV 236
Query: 355 EPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ + + + + + TC E T+T+
Sbjct: 237 TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283
Score = 92.6 bits (229), Expect = 5e-20
Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 7/184 (3%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF 279
+ + +P G +V++TC + + L +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGI---ETPLPKKELLLPGNNRKVYELSNV 57
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEH-THITDQPEDYEVEAGQSATFRCNAV-SDPSL 337
+ + C++ G + LTV + P G++ T RC P
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA 117
Query: 338 KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
L++V LRG + + EP + + + TV + ++CR + +L +
Sbjct: 118 NLTVVLLRGEKELK--REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175
Query: 398 VQVP 401
P
Sbjct: 176 TSAP 179
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 159 bits (404), Expect = 5e-45
Identities = 46/203 (22%), Positives = 69/203 (33%), Gaps = 23/203 (11%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPIS--------QAPPNPRRK 176
+ E E++ C SG P + W G + AP R
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA-PEITEAPKDEYTVDGKT 235
+ IT ++ + D G Y C + G Y +V +++ P G
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 236 VVLTCRVF-GAPKPEVNWIHNQKELT------------GGRYTILETGDLKITDVAFADS 282
VLTC G+P E +W + + ++GDL V DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 283 GEYTCFARNKLGTAQGSGSLTVK 305
GEY C A+N GTA S + +
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMD 204
Score = 141 bits (356), Expect = 2e-38
Identities = 37/199 (18%), Positives = 57/199 (28%), Gaps = 21/199 (10%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK----------SLIIKH 93
N+ ++L C + G P+ W + +
Sbjct: 12 QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71
Query: 94 VEFSDQGSYTCEVSNGVGEAKS-YSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SG 151
V D G YTC VS G+ SI L+VL P + C G
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDG 131
Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRI---------TIENLRKSDTGNYGCNATNS 202
P E W +G + A R + + + D+G Y C A N
Sbjct: 132 SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191
Query: 203 LGYVYKDVYVNVLAHAPEI 221
G + ++ A +
Sbjct: 192 YGTAMRSEAAHMDAVELNV 210
Score = 138 bits (350), Expect = 1e-37
Identities = 38/207 (18%), Positives = 57/207 (27%), Gaps = 26/207 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG------------GRYTI 266
+ A D + +++ LTC G P V W Q T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGS--LTVKEHTHITDQPEDYEVEAGQS 324
+ + + V D+GEYTC + G G S LTV V G
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 325 ATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPR---------FVQSNDYSLTVTKSSEL 374
A C+ P W + + + + L +
Sbjct: 122 AVLTCSEHDGSP--PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 375 DSGQYTCRAQTELDFIEAQATLTVQVP 401
DSG+Y C+AQ +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMDAV 206
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 164 bits (415), Expect = 6e-45
Identities = 58/410 (14%), Positives = 109/410 (26%), Gaps = 98/410 (23%)
Query: 42 KEV--ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK------------ 87
K+V + VEL C Q W ++ S G
Sbjct: 1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60
Query: 88 -------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE 140
LIIK+++ D +Y CEV + E + L+ + +
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---------NSDTHLLQG 111
Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
+++T ++ P + P + G +++ L D+G + C
Sbjct: 112 QSLTLTLESPPGSSPSVQCRS---------PRGKNIQGGKTLSVSQLELQDSGTWTCTVL 162
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-----GAPKPEVNW--- 252
+ V + + VLA A Y +G+ V + + E+ W
Sbjct: 163 QNQKKVEFKIDIVVLAFQK----ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE 218
Query: 253 -----------------IHNQKELTGGRYTILETGDLKIT----DVAFADSGEYTCFARN 291
+ ++ + + + L +T +A SG T
Sbjct: 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278
Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
K G +L V T C S KL + ++
Sbjct: 279 KTGKLHQEVNLVVMRAT-------------QLQKNLTCEVWGPTSPKLMLSLKLENKEA- 324
Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
++G + C D + ++V
Sbjct: 325 ---------KVSKREKAVWVLNPEAGMWQCLLS---DSGQVLLESNIKVL 362
Score = 149 bits (376), Expect = 1e-39
Identities = 46/319 (14%), Positives = 90/319 (28%), Gaps = 60/319 (18%)
Query: 133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI---------- 182
+ + + +TV C AS + HW ++ + GP+++
Sbjct: 2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61
Query: 183 --------TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGK 234
I+NL+ D+ Y C + V V+ +T D + + G+
Sbjct: 62 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVF--------GLTANS-DTHLLQGQ 112
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
++ LT P V + + I L ++ + DSG +TC
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLELQDSGTWTCTVLQNQK 166
Query: 295 TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF-------------------RCNAVSDP 335
+ + V + G+ F + S
Sbjct: 167 KVEFKIDIVVLAFQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS 223
Query: 336 SLKLSIVWLRGSEPI-DFESEPRFVQSNDYSLTVTKSSEL----DSGQYTCRAQTELDFI 390
++ + +P+ L +T L SG T + + +
Sbjct: 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL 283
Query: 391 EAQATLTVQVPLEAPSNFT 409
+ L V + N T
Sbjct: 284 HQEVNLVVMRATQLQKNLT 302
Score = 101 bits (252), Expect = 3e-23
Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 47/245 (19%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGG-------------------RYTILETGD-- 271
G TV LTC + +W ++ + G R ++ + G+
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
L I ++ DS Y C ++ V+ D + GQS T +
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQ--------KEEVQLLVFGLTANSDTHLLQGQSLTLTLES 120
Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
S+ +L+V++ DSG +TC +E
Sbjct: 121 PPGS--SPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE 169
Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
+ + V +A S + + + P + + W + + S
Sbjct: 170 FKIDIVVLAFQKASSIVYKKEGEQVEFSF-------PLAFTVEKLTGSGELWWQAERASS 222
Query: 452 IRELI 456
+ I
Sbjct: 223 SKSWI 227
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 157 bits (399), Expect = 2e-44
Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 35/199 (17%)
Query: 51 VELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSYTCEVS 107
++L+ + + WS +G I SDR+ G G+ L I +D+G Y E+
Sbjct: 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
Query: 108 NGVGEAKSYSIDLSVLA---------------------APYFTVEPEFINAAEEETVTFE 146
+G + ++DLS A A P+ + E + +
Sbjct: 80 DGKTGHQK-TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 138
Query: 147 CKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATN 201
C G P PE+ W+ N K + + TI + +D+G YG N
Sbjct: 139 CNVWGDPPPEVSWLKNEKAL---AQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195
Query: 202 SLGYVYKDVYVNVLAHAPE 220
G D V+V PE
Sbjct: 196 KYGSETSDFTVSVF--IPE 212
Score = 143 bits (362), Expect = 3e-39
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 33/205 (16%)
Query: 132 PEFINAAEEETVTFECK-ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN----RITIEN 186
+ + E + + + +++W HNG I + R K G + I
Sbjct: 9 TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR---YSDRVKTGVTGEQIWLQINE 65
Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--------------------APEITEAPK 226
+D G Y + K V ++ A+ A + P
Sbjct: 66 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 125
Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFAD 281
+GK + LTC V+G P PEV+W+ N+K L + I V+ AD
Sbjct: 126 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTAD 185
Query: 282 SGEYTCFARNKLGTAQGSGSLTVKE 306
SG+Y +NK G+ +++V
Sbjct: 186 SGKYGLVVKNKYGSETSDFTVSVFI 210
Score = 129 bits (325), Expect = 3e-34
Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 30/197 (15%)
Query: 233 GKTVVLTCRV-FGAPKPEVNWIHNQKELT-GGRYTILETGD---LKITDVAFADSGEYTC 287
+ + L V + +VNW HN + R TG+ L+I + D G+Y
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 288 FARNKLGTAQGSGSLTVKEHT---------------------HITDQPEDYEVEAGQSAT 326
+ Q + L+ + + + P+ ++ G++
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 327 FRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSLTVTKSSELDSGQYTCRAQ 384
CN DP + WL+ + + T+ S DSG+Y +
Sbjct: 137 LTCNVWGDP--PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194
Query: 385 TELDFIEAQATLTVQVP 401
+ + T++V +P
Sbjct: 195 NKYGSETSDFTVSVFIP 211
Score = 77.2 bits (190), Expect = 3e-16
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 25 SASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS--- 81
+A ++ + K + L C G P P+ W K+ + +D +
Sbjct: 109 AAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF 168
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA 124
+ I V +D G Y V N G S +SV
Sbjct: 169 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSVFI 210
Score = 57.6 bits (139), Expect = 2e-09
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 10/112 (8%)
Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCN-AVSDPSLKLSIVWLRGSEPIDFESEPRF 358
GS T + Q + LK + W I + +
Sbjct: 1 GSSIALSATDLKIQ------STAEGIQLYSFVTYYVEDLK--VNWSHNGSAIRYSDRVKT 52
Query: 359 VQSND-YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
+ + L + + + D G+Y + L+ Q EA + F
Sbjct: 53 GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 104
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 167 bits (422), Expect = 3e-44
Identities = 78/422 (18%), Positives = 123/422 (29%), Gaps = 57/422 (13%)
Query: 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRIS-----QGNYGKSLIIKHVEFSDQGSYTC 104
K + G I S V N + RI G S++I + SD G Y C
Sbjct: 143 KRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLC 202
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEF---------INAAEEETVTFECKASGLPEP 155
+ + K + DL VL V + + F C+ S
Sbjct: 203 QAGDDSNSNKK-NADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENC 261
Query: 156 EIHWVHNGKPISQAPP----NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211
++ GK NP+ K G + I LRK D G Y C A +
Sbjct: 262 DVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPI 321
Query: 212 VNVLAHAPE---ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW---------------- 252
E I +P V G +V + C + +
Sbjct: 322 QAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLV 381
Query: 253 --IHNQKELTGGRYTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
K GR ++LE + + + D+G Y C + + + +
Sbjct: 382 DSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGD-TLWRTTVEIKII 440
Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSD--PSLKLSIVWLRGSEPIDFESE----PRFV 359
E P + G++ C+ K W + FV
Sbjct: 441 EGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFV 500
Query: 360 QSND----YSLTVTKSSELDSGQYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTLIQVI 414
++ SLT+ + D G Y C + + E A + V+ A S +
Sbjct: 501 NCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKA 560
Query: 415 DA 416
DA
Sbjct: 561 DA 562
Score = 150 bits (380), Expect = 1e-38
Identities = 72/397 (18%), Positives = 110/397 (27%), Gaps = 65/397 (16%)
Query: 55 CIFGGTPLPQTIWSKDG-VPINPSDRIS----QGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
C G T+ S +G V + R + N + I + D G Y C +
Sbjct: 38 CRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN 97
Query: 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC--KASGLPEPEIHWVHNGKPIS 167
S+ + L V P + + TVT C K + + + G
Sbjct: 98 SRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156
Query: 168 QAPP--NPRRKVGPNRI--------------TIENLRKSDTGNYGCNATNSLGYVYKDVY 211
RI I LR SD G Y C A + K+
Sbjct: 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216
Query: 212 VNVL-AHAPEITEAPKDEYTVD-------GKTVVLTCRVFGAPKPEVNWIHNQKEL--TG 261
+ VL + E + T CR +V K
Sbjct: 217 LQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276
Query: 262 GRYTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQGSGSLT----VKEHTHITD 312
GR + + IT + D+G Y C A + +GS V E + I
Sbjct: 277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--------- 363
P + AG S C SI + E P V S
Sbjct: 337 SPTVVKGVAGSSVAVLCPYNRKE--SKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR 394
Query: 364 -----------YSLTVTKSSELDSGQYTCRAQTELDF 389
+++ + + + D+G Y C + +
Sbjct: 395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Score = 116 bits (291), Expect = 2e-27
Identities = 57/348 (16%), Positives = 106/348 (30%), Gaps = 59/348 (16%)
Query: 132 PEFINAAEEETVTFECK---ASGLPEPEIHWVHNGKPIS-----------QAPPNPRRKV 177
PE +N+ E +V+ C S +W G + R +
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 178 GPNR------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV 231
+ I L + D+G Y C + + DV ++ P + K
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS-LEVSQGPGLLNDTKVYTVD 125
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQ---------------KELTGGRYTILETGD----- 271
G+TV + C + ++ Q GR + G
Sbjct: 126 LGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLF 185
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE---------DYEVEA 321
+ I + +D+G+Y C A + + + + L V + + E
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245
Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVTKSSELDSGQ 378
A F C S + + +V G FE + +S+ +T + D+G+
Sbjct: 246 ANVAKFLCRQSSGENCDV-VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGR 304
Query: 379 YTCRAQTELDFIEAQATLT----VQVPLEAPSNFTLIQVIDAKKAVVS 422
Y C A ++ E V P + T+++ + V
Sbjct: 305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVL 352
Score = 60.0 bits (144), Expect = 2e-09
Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 22/134 (16%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSD---------RISQGNYGKSLIIKHVEFSDQGS 101
C F W+ G PS + + SL + V +D+G
Sbjct: 464 CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK-ASGLPEPEIHWV 160
Y C V G ++ ++ ++V ++ A+ + E SG E E
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERK--AAGSRDVSLAKADAAPDEKVLDSGFREIE---- 577
Query: 161 HNGKPISQAPPNPR 174
++A +PR
Sbjct: 578 ------NKAIQDPR 585
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 155 bits (392), Expect = 1e-42
Identities = 50/279 (17%), Positives = 87/279 (31%), Gaps = 35/279 (12%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS 107
+ L CI W+ + N I + E + G+YTC S
Sbjct: 27 GDTLSLTCIDPDF----VRWTFKTYFNEMVE-----NKKNEWIQEKAEATRTGTYTCSNS 77
Query: 108 NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPI 166
NG+ SI + V + + E+ C + + + +GK +
Sbjct: 78 NGLTS----SIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL 133
Query: 167 SQAPPNPRRKVGPNR-ITIENL-RKSDTGNYGCNATNSLGYVYKDVY----VNVLAHAPE 220
P + P ITI+N+ R C A +++ D + + P
Sbjct: 134 ---PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV 190
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKEL-----------TGGRYTILE 268
++ G T + C + W+ + G +
Sbjct: 191 VSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYER 250
Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
L I+ DSG + C+A N G+A + +L V E
Sbjct: 251 QETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 149 bits (378), Expect = 1e-40
Identities = 46/294 (15%), Positives = 91/294 (30%), Gaps = 33/294 (11%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
+ P + +T++ C + W N
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKK------NEW 59
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV 242
E + TG Y C+ +N L +YV V ++ + + ++ C +
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLT---SSIYVFV-RDPAKLFLVGLPLFGKEDSDALVRCPL 115
Query: 243 FGAPKPEVNWIH--NQKELTGGRYTILETGDLKITDVAFA-DSGEYTCFARNKLGTAQGS 299
+ + I + T + + I +V A C A+ GT S
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD-GTWLHS 174
Query: 300 GSLTVKEHT------HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
T+K ++ + ++ G + T C + D S ++ +WL+ +
Sbjct: 175 DKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCT-IKDVSTSVNSMWLKMNPQPQHI 233
Query: 354 SEPR--------FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
++ + F +LT++ + DSG + C A TL V
Sbjct: 234 AQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 119 bits (299), Expect = 5e-30
Identities = 27/202 (13%), Positives = 47/202 (23%), Gaps = 14/202 (6%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSL 89
P + ++ + + C + Q + DG +
Sbjct: 89 RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGIT 148
Query: 90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA----PYFTVEPEFINAAEEETVTF 145
I + C S L V A P +V + +T T
Sbjct: 149 IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTV 208
Query: 146 ECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRI--------TIENLRKSDTGNYG 196
C + W+ TI + R D+G +
Sbjct: 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFM 268
Query: 197 CNATNSLGYVYKDVYVNVLAHA 218
C A N+ G + V+
Sbjct: 269 CYANNTFGSANVTTTLKVVEKG 290
Score = 51.7 bits (123), Expect = 4e-07
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 15/106 (14%)
Query: 296 AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESE 355
+Q S S I + VEAG + + C + W +
Sbjct: 1 SQPSASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPD------FVRWTFKTYF------ 48
Query: 356 PRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
V++ K+ +G YTC L + + V+ P
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGL---TSSIYVFVRDP 91
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 159 bits (403), Expect = 2e-41
Identities = 87/605 (14%), Positives = 161/605 (26%), Gaps = 77/605 (12%)
Query: 44 VALRNKKVELFCIF-------GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
V + C+ +W + I S+ +
Sbjct: 14 VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIA- 72
Query: 97 SDQGSYTCEVSN-GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP 155
S TC + G E Y I + P +P+ ++ E C+ G E
Sbjct: 73 SLNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNEGKKMRCEWDGGRET 129
Query: 156 EI----HWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG-----YV 206
+ A +R + + A N+LG ++
Sbjct: 130 HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHI 189
Query: 207 YKDVYVNVLAHAPEITEAPKDEYT-----------VDGKTVVLTCRVFGAPKPEVNWIHN 255
D V + P E ++L + K W
Sbjct: 190 NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQI 249
Query: 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCF-----ARNKLGTAQGSGSLTVKEHTHI 310
E T + DLK +T + + G G S +E + I
Sbjct: 250 PPEDTASTRSSFTVQDLK----------PFTEYVFRIRCMKEDGK--GYWSDWSEEASGI 297
Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP--------IDFESEPRFVQS- 361
T + + + + +++L L E + +Q+
Sbjct: 298 TYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY 357
Query: 362 --NDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATLTVQVPLEAPSNFTLIQVIDAKK 418
N LTV ++ D T + + A T+ L
Sbjct: 358 TVNATKLTVNLTN--DRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNM 415
Query: 419 AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 478
V W +S++ + + V + + T +
Sbjct: 416 LWVEWTT-PRESVKKYILEWCVLSD---KAPCITDWQQEDGTVHRTYLRGNLAESKCYLI 471
Query: 479 RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMG 536
V G P I ++ + P ++ +G + L+W + + NG +
Sbjct: 472 TVTPVYADGPGSPESIKAY-LKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRN 530
Query: 537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY 596
Y I Y+++ G + D + T L+ L T Y + +A YT G ++
Sbjct: 531 YTIFYRTIIGNET-------AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEF 583
Query: 597 LFYVP 601
F P
Sbjct: 584 TFTTP 588
Score = 159 bits (402), Expect = 2e-41
Identities = 71/545 (13%), Positives = 143/545 (26%), Gaps = 88/545 (16%)
Query: 225 PKDEYTVDGKTVVLTCRV-------FGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
P+ C + F + W N + +YTI+ +T
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69
Query: 278 AF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVSD 334
+ + + TC Q +T+ ++P++ + RC + +
Sbjct: 70 DIASLNIQLTCNILTFGQLEQNVYGITIISGL-PPEKPKNLSCIVNEGKKMRCEWDGGRE 128
Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKS-SELDSGQYTCRAQTELDFIEAQ 393
L+ + + ++ + + S TV S + + A+ L + +
Sbjct: 129 THLETNFTL-KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD 187
Query: 394 ---ATLTVQVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGE 449
+V P N ++I + + ++W P Y +Q T+
Sbjct: 188 HINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN--PSIKSVIILKYNIQYRTKDAST 245
Query: 450 GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVTPEGVPGT 506
S ++ V P ++ R+ G S+ S +T E P
Sbjct: 246 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK 305
Query: 507 -----VQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
+ + G L W + P + NG ++ Y++ K +
Sbjct: 306 APSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-----------L 354
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV---PFKNPDNVEGRGSTPN 616
+ T + KL + +Y L G + +P N
Sbjct: 355 QNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDN 414
Query: 617 NLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEI 676
L + WT E Y + W + + DW+
Sbjct: 415 MLWVEWTTPRESVKK-----YILEWCVLS----DKAPCITDWQ----------------- 448
Query: 677 KVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF 736
+ T + V G P I ++
Sbjct: 449 ------------------QEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAY 490
Query: 737 VTPEG 741
+
Sbjct: 491 -LKQA 494
Score = 142 bits (358), Expect = 1e-35
Identities = 72/459 (15%), Positives = 122/459 (26%), Gaps = 84/459 (18%)
Query: 304 VKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS-----IVWLRGSEPIDFESEPRF 358
+ +I+ PE V+ + T C IVW I E
Sbjct: 2 LDPCGYIS--PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY-TI 58
Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQT--ELDFIEAQATLTVQVPLEAPSNFTLIQVIDA 416
+ S+T T + + Q TC T +L+ T+ +P E P N + I V +
Sbjct: 59 INRTASSVTFTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCI-VNEG 116
Query: 417 KKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDK-FVPASK 475
KK W+ L +F T + + + T+ VD V
Sbjct: 117 KKMRCEWDGGRETHLETNF------TLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN 170
Query: 476 NFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY--LKWVKPEQPNGV 533
V A N I + P +L I + L W P + +
Sbjct: 171 IEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI 230
Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
++ Y I+Y++ + + P + T +S + L+P T+Y + + G G
Sbjct: 231 ILKYNIQYRTKDASTWSQIP---PEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYW 287
Query: 594 SKY--------LFYVPFKNPDNV----EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFW 641
S + P K P + + W +P E N Y +
Sbjct: 288 SDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTL 347
Query: 642 RRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGES 701
R + + L T Y
Sbjct: 348 TRWKSHLQNYTVNAT-------KLTVNLTNDRYLA------------------------- 375
Query: 702 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
+ N + +
Sbjct: 376 ----------------TLTVRNLVGKSDAAVLTIPACDF 398
Score = 137 bits (345), Expect = 5e-34
Identities = 96/626 (15%), Positives = 167/626 (26%), Gaps = 94/626 (15%)
Query: 130 VEPEFINAAEEETVTFEC-------KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-- 180
+ PE T C + I W N I P +
Sbjct: 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI---PKEQYTIINRTAS 64
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
+T ++ CN G + ++VY + + E PK+ L+C
Sbjct: 65 SVTFTDIAS-LNIQLTCNILTF-GQLEQNVYGITI-ISGLPPEKPKN----------LSC 111
Query: 241 RVFGAPKPEVNWIHNQKELTGGRYTI-LETGDLKITDVAFADSGEYTCF----------- 288
V K W ++ +T+ E K D +C
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171
Query: 289 -----ARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS--------DP 335
A N LG + + P + V ++
Sbjct: 172 EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVIN-SEELSSILKLTWTNPSIKSVI 230
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG-QYTCR--AQTELDFIEA 392
LK +I + + P S S TV L +Y R E
Sbjct: 231 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQD---LKPFTEYVFRIRCMKEDGKGYW 287
Query: 393 Q---ATLTVQVPLEAPS-------NFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQT 442
+ + PS + + W + P G Y+V T
Sbjct: 288 SDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEV-T 346
Query: 443 WTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 502
T ++ VN T++ + + A + N + +
Sbjct: 347 LTRWKSH--LQNYTVN-----ATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQ 399
Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
V L+A P + WV+ P + Y +++ + +
Sbjct: 400 ATHPVMDLKAFPKDNML----WVEWTTPRESVKKYILEWCVLSDKAPCITDWQ--QEDGT 453
Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD---NVEGRGSTPNNLV 619
+ L S Y I + G G+ Y+ P V + N V
Sbjct: 454 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAV 513
Query: 620 ISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV 679
+ W +P N Y IF+R T +D +E L++ + Y ++ +
Sbjct: 514 LEWDQLPVDVQNGFIRNYTIFYR---TIIGNETAVNVDSSHTEYTLSSLTSDTLYMVR-M 569
Query: 680 QTWTEKDGEGSIRELIVNKGESTTTE 705
+T++ G E TT +
Sbjct: 570 AAYTDE-GGKDGPEFTF-----TTPK 589
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 151 bits (383), Expect = 1e-40
Identities = 51/322 (15%), Positives = 93/322 (28%), Gaps = 51/322 (15%)
Query: 131 EPEFINAAEEETVTFEC-----------KASGLPEPEIHWVHNGK------PISQAPPNP 173
I E+E +C + + W + PI+ P
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE---APKDEYT 230
R + + +DTGNY C N+ + V+ P +
Sbjct: 73 RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLY 132
Query: 231 VDGKTVVLTCRVF-----GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEY 285
++ +TC + KP + W ++ I E +L +++G Y
Sbjct: 133 IEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNY 192
Query: 286 TCFARNKLGTAQGSGS----LTVKEHTHIT--------DQPEDYEVEAGQSATFRCNAVS 333
TC + + V + YE E G+ C
Sbjct: 193 TCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF 252
Query: 334 DPSLKL--SIVWLR-GSEPIDFESEPRFVQSNDYS----------LTVTKSSELD-SGQY 379
+ + W G +P D + +S +S L++ K + D Y
Sbjct: 253 SFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSY 312
Query: 380 TCRAQTELDFIEAQATLTVQVP 401
C A++ + A + +VP
Sbjct: 313 VCHARSAKGEVAKAAKVKQKVP 334
Score = 134 bits (338), Expect = 1e-34
Identities = 55/332 (16%), Positives = 98/332 (29%), Gaps = 62/332 (18%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPIN---------PSDRISQGNYGKSLIIKHVE 95
L ++ + IW + P +RIS+ L +
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK--EKDVLWFRPTL 87
Query: 96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVT----------- 144
+D G+YTC + N +K + L V+ + + +
Sbjct: 88 LNDTGNYTCMLRNTTYCSKV-AFPLEVVQKD--SCFNSPMKLPVHKLYIEYGIQRITCPN 144
Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT---- 200
+ +P I W I ++ S+ GNY C T
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKI---QNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPEN 201
Query: 201 NSLGYVYKDVYVNVLA----HAPEITEAPKDEYTVD---GKTVVLTCRVF----GAPKPE 249
++ + + V V+ P + +P D + G+ +++ C V+ + E
Sbjct: 202 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 261
Query: 250 VNWIHNQKELT----------GGRYTILE----TGDLKITDVAFAD-SGEYTCFARNKLG 294
V W + K+ ++ E T L I V D Y C AR+ G
Sbjct: 262 VWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321
Query: 295 TAQGSGSLTVKEHTHITDQPEDYEVEAGQSAT 326
+ + K E+ G AT
Sbjct: 322 EVAKAAKVKQKV----PAPRYTVELACGFGAT 349
Score = 94.9 bits (235), Expect = 3e-21
Identities = 34/223 (15%), Positives = 62/223 (27%), Gaps = 30/223 (13%)
Query: 223 EAPKDEYTVDGKTVVLTCRVF-----------GAPKPEVNWIHNQKELTGGRYT------ 265
+ + + + + C +F + + W +++
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 266 ---ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT----HITDQPEDYE 318
E L D+G YTC RN ++ + L V + P
Sbjct: 72 NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKL 131
Query: 319 VEAGQSATFRCNAVS---DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
C V S+K +I W G I V +L+ + +
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ---NFNNVIPEGMNLSFLIALISN 188
Query: 376 SGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK 418
+G YTC + T T+ V + + VI +
Sbjct: 189 NGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPN 231
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 140 bits (355), Expect = 2e-38
Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 26/207 (12%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPP---NPRRKVGP 179
FT + E+ V F +A +++++ N K I + P + R G
Sbjct: 1 GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH------------------APEI 221
+ +E L+ D G Y + + V + P
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGD--LKITDVA 278
E E T V+L C+V K + W +++E++ + G L IT+ +
Sbjct: 121 VEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 179
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVK 305
D+G Y ++ G + L +
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 125 bits (314), Expect = 8e-33
Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 35/197 (17%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKS 88
+ K +V + + + + I + I +
Sbjct: 9 ELAVEILEKGQVRF------WMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSI------------------DLSVLAAPYFTV 130
+ ++ ++ D+G+YT ++ +G S + + P+F V
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF-V 121
Query: 131 EPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKV--GPNRITIENL 187
E E V +CK + + E I W + + IS + + G + I
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS---VDEKHDFKDGICTLLITEF 178
Query: 188 RKSDTGNYGCNATNSLG 204
K D G Y + G
Sbjct: 179 SKKDAGIYEVILKDDRG 195
Score = 118 bits (298), Expect = 1e-30
Identities = 32/203 (15%), Positives = 71/203 (34%), Gaps = 27/203 (13%)
Query: 222 TEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT-GGRYTILETGD-----LKI 274
T++ ++ V + + +VN+I N+KE+ G +Y + + + +
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE------------------D 316
+ D G YT ++ T + L + + E
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 125
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS 376
+EV + +C + + IVW + I E + +L +T+ S+ D+
Sbjct: 126 WEVTGECNVLLKCKVANIKK-ETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDA 183
Query: 377 GQYTCRAQTELDFIEAQATLTVQ 399
G Y + + +++ L +
Sbjct: 184 GIYEVILKDDRGKDKSRLKLVDE 206
Score = 73.8 bits (181), Expect = 4e-15
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHV 94
+V V L C I W KD I+ ++ + +L+I
Sbjct: 119 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 178
Query: 95 EFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
D G Y + + G+ KS + L
Sbjct: 179 SKKDAGIYEVILKDDRGKDKS-RLKLVD 205
Score = 53.4 bits (128), Expect = 3e-08
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 311 TDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSL 366
T E+ F A + K + ++ + I + + + +
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
+ K + D G YT + Q + L V +
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 102
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 143 bits (362), Expect = 7e-38
Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 20/194 (10%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-- 183
P V+ + + V C+ G + W+ S + P+
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQS--ATVMKSGGLPSLGLTL 216
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF 243
+ N C A N +G V VNV + + V+ + V
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV-----SFPASVQLHTAVEMHHWCIPFSVD 271
Query: 244 GAPKPEVNWIHNQKELTG-----------GRYTILETGDLKITDVAFADSGEYTCFARNK 292
G P P + W+ N L + G L++ ++G YT A N
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331
Query: 293 LGTAQGSGSLTVKE 306
G A S +
Sbjct: 332 FGQASASIMAAFMD 345
Score = 124 bits (312), Expect = 3e-31
Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 17/196 (8%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGDLKI 274
P + + G V+L C+V G + WI + E T + L + L +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 275 TDVA-FADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS 333
+V + TC+A N +G A+ S + V + +
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEM----HHWCIPFSVDG 272
Query: 334 DPSLKLSIVWLRGSEPID--------FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
P S+ WL ++ F L + + + +++G YT A
Sbjct: 273 QP--APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330
Query: 386 ELDFIEAQATLTVQVP 401
A
Sbjct: 331 PFGQASASIMAAFMDN 346
Score = 118 bits (296), Expect = 4e-29
Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 14/175 (8%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
V L C G L Q W + + + + + ++ + TC N
Sbjct: 176 VLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235
Query: 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQA 169
VG A+ SV F + A E G P P + W+ NG +++
Sbjct: 236 VGRAEV-----SVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET 290
Query: 170 PPNPRRKVGPNR--------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ P + + + GNY A N G + +
Sbjct: 291 SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345
Score = 70.5 bits (172), Expect = 3e-13
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 2/120 (1%)
Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
+ Q + V+ G RC W+ +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRG--LEQAGWILTELEQSATVMKSGGLPSLGL 214
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNP 425
+S+L+ TC A+ ++ E + V P + + V P
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQP 274
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 135 bits (340), Expect = 1e-35
Identities = 46/264 (17%), Positives = 86/264 (32%), Gaps = 32/264 (12%)
Query: 51 VELFCIFGG---TPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
+ C G Q + +NP+ + K+ + E TC V
Sbjct: 21 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAV 80
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI 166
G ++ +++ + P V +E VT +C+A P NG P
Sbjct: 81 ILGNQSQET-LQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH----PRAKVTLNGVPA 135
Query: 167 SQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY----KDVYVNVLAHAPEIT 222
P ++ ++ + + ++ C+AT + + + VL P +
Sbjct: 136 QPLGP-------RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-GPRLD 187
Query: 223 EA--PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA 280
E P + + C+ +G P PE+ + + L G+ V
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT-------FPLPIGES--VTVTRD 238
Query: 281 DSGEYTCFARNKLGTAQGSGSLTV 304
G Y C AR+ G ++ V
Sbjct: 239 LEGTYLCRARSTQGEVTREVTVNV 262
Score = 127 bits (320), Expect = 4e-33
Identities = 37/272 (13%), Positives = 69/272 (25%), Gaps = 32/272 (11%)
Query: 139 EEETVTFECKASGL---PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY 195
+ T C GL E ++H + ++ T
Sbjct: 17 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 76
Query: 196 GCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN 255
C V + + P +G V + C K +N +
Sbjct: 77 TCAVILGNQSQETLQTVTIYSF-PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPA 135
Query: 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH------ 309
Q + L + + ++C A ++ + T +
Sbjct: 136 Q--------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 187
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
D P ++ T C A +P + L+ E V +
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNP--LPELKCLKDGTFPLPIGESVTVTRD------- 238
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
G Y CRA++ + + T+ V P
Sbjct: 239 -----LEGTYLCRARSTQGEVTREVTVNVLSP 265
Score = 110 bits (277), Expect = 2e-27
Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 28/190 (14%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI 90
P + K EV +V + C P + + +GVP P +Q L+
Sbjct: 97 SFPAPNVILTKPEV-SEGTEVTVKCE--AHPRAK--VTLNGVPAQPLGPRAQ------LL 145
Query: 91 IKHVEFSDQGSYTCEVSNGVG---EAKSYSIDLSVLAAPYFTVE--PEFINAAEEETVTF 145
+K + S++C + V K+ + +L VL P P E T
Sbjct: 146 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTP 205
Query: 146 ECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY 205
C+A G P PE+ + +G + + G Y C A ++ G
Sbjct: 206 MCQAWGNPLPELKCLKDGTFPLPIG------------ESVTVTRDLEGTYLCRARSTQGE 253
Query: 206 VYKDVYVNVL 215
V ++V VNVL
Sbjct: 254 VTREVTVNVL 263
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 136 bits (343), Expect = 1e-35
Identities = 47/308 (15%), Positives = 88/308 (28%), Gaps = 39/308 (12%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASG-LPEPE---IHWVHNGKPISQAPPNPRRKVGPN 180
A +++ + T +G P P W + +P
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------A 52
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVL 238
+T+ + + G+Y ++ + V ++ A P+ Y V L
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL 112
Query: 239 TCRVF---GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
V G + +H + G I T D+ I + +G YT +
Sbjct: 113 HATVKFSGGKTPADNYELHYS--WSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESED 170
Query: 296 AQGSGSLTVKEHTHITDQP--EDYEVEAGQSATFRCNAVSD--------PSLKLSIVWLR 345
+ S S + T DQ E V G + D P+L + W
Sbjct: 171 SAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYL 230
Query: 346 GSEPIDF---------ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATL 396
E E+ F + D L ++ D+ ++ C A+ + +
Sbjct: 231 QREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Query: 397 TVQVPLEA 404
+
Sbjct: 291 AASTSRKC 298
Score = 114 bits (286), Expect = 4e-28
Identities = 41/284 (14%), Positives = 74/284 (26%), Gaps = 54/284 (19%)
Query: 58 GGTPLPQTI---WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114
G PLP + W+KD P N +L + + GSY V +
Sbjct: 28 GDEPLPSNLTYTWTKDDQPHE--------NNTATLTVADATSENAGSYKVTVQDTDTMTS 79
Query: 115 SYSIDLSVLAA--PYFTVEPEFINAAEEETVTFECK---ASGLPEPEIH-----WVHNGK 164
S + A EP+ + + V + G + + W
Sbjct: 80 VESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGED 139
Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEA 224
I ITI+ G Y ++ + +
Sbjct: 140 VIDTTQ----------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD 189
Query: 225 PKDEYTVD-GKTVVLTCRVF--------GAPKPEVNW--------------IHNQKELTG 261
+ TV G + L V G P + + I ++
Sbjct: 190 VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEAL 249
Query: 262 GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
++I G L + D+ ++ C A+ + +
Sbjct: 250 EGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293
Score = 102 bits (254), Expect = 5e-24
Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 29/202 (14%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFG-APKPE---VNWIHNQKELTGGRYTILETGDLK 273
A ++ + G LT V G P P W + + T L
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TATLT 55
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH---ITDQPEDYEVEAGQSATFRCN 330
+ D ++G Y ++ + + E +P+ + V +
Sbjct: 56 VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115
Query: 331 AVS------DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
+ +L W +G + ID +T+ + + +G YT +
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDVID----------TTQDITIQEFTADKNGVYTVKVW 165
Query: 385 TELDFIEAQATLTVQVPLEAPS 406
E + A A+ + +
Sbjct: 166 GESEDSAASASTKIMLATMNVD 187
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 131 bits (331), Expect = 4e-35
Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 33/210 (15%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEP----EIHWVHNGKPISQAPP------------- 171
T + I A+ ET CK + PE +I W+ +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 172 ------------NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
+ K G I + NL+ SD G Y C + G K + VL P
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-KP 122
Query: 220 EITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT--GGRYTILETGDLKITD 276
T D G L C G+ + W T + + + + +
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKN 182
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ SG Y+C +N++G+ Q L V
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 113 bits (284), Expect = 8e-29
Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 35/204 (17%)
Query: 44 VALRNKKVELFCIFGGTPLPQT----IWSKDGVPINPSDRISQGNYGK------------ 87
+ + L C F +P Q W D++ G
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 88 --------------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
S+ + +++ SD G+Y C+V G A L+VL P T
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK-KFLLTVLVKPSGTRCFV 129
Query: 134 FINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSD 191
+ +C+ G + W + P P + I+++N
Sbjct: 130 DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQT--MPTPWLAEMTSPVISVKNASSEY 187
Query: 192 TGNYGCNATNSLGYVYKDVYVNVL 215
+G Y C N +G + ++V+
Sbjct: 188 SGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 110 bits (277), Expect = 8e-28
Identities = 42/214 (19%), Positives = 65/214 (30%), Gaps = 34/214 (15%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKP----EVNW----------------------I 253
IT + G+T L C+ +P+ ++ W
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 254 HNQKELTGGRYTILET------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
N GR + +T++ +D G Y C + G A LTV
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
T D E G +C SL L W + S+ P + ++
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEG-SLPLQFEWQKLSDSQ-TMPTPWLAEMTSPVIS 179
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
V +S SG Y+C Q + + L V P
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
Score = 59.7 bits (144), Expect = 3e-10
Identities = 25/125 (20%), Positives = 34/125 (27%), Gaps = 27/125 (21%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPS--LKLSIVWLRGSEPIDFESEP---------- 356
IT + E G++A C P L I WL +
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 357 ---------------RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
V+S D S+ VT D G Y C+ + + LTV V
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 402 LEAPS 406
Sbjct: 122 PSGTR 126
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 127 bits (320), Expect = 2e-33
Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 12/200 (6%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSP--QSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
+P+ P ++ ++W S R Y V+ W + +
Sbjct: 3 LPMMPPVGVQ-ASILSHDTIRITWADNSLPKHQKITDSRYYTVR-WKTNIPANTKYKNA- 59
Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG---TVQSLEAIP 514
+ + V P + V+ G + S T E VP ++ +
Sbjct: 60 -NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKE 118
Query: 515 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP 574
+ W P + NG + GY I Y + ++ + + ++ L
Sbjct: 119 GKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIE---PVVGNRLTHQIQELTL 175
Query: 575 STKYRIHLAGYTKAGDGAES 594
T Y + G G S
Sbjct: 176 DTPYYFKIQARNSKGMGPMS 195
Score = 89.1 bits (221), Expect = 2e-20
Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 62/253 (24%)
Query: 500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLER 555
P P ++A L + W P Y +++++
Sbjct: 4 PMMPP---VGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA------NT 54
Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK-YLFY----VPFKNPDN--V 608
++ TT S + GL+P+T Y + S VP P + V
Sbjct: 55 KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTV 114
Query: 609 EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQ 668
+ P ++++W P E N Y I++ E
Sbjct: 115 VSKEGKPKTIIVNWQ--PPSEANGKITGYIIYYSTDVNAE-------------------- 152
Query: 669 PTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNG 728
+ W + G+ T ++ + + + ++ A N G
Sbjct: 153 ----------IHDWVIEPVVGN----------RLTHQIQELTLDTPYYFKIQARNSKGMG 192
Query: 729 PPSEIISFVTPEG 741
P SE + F TP+
Sbjct: 193 PMSEAVQFRTPKA 205
Score = 73.7 bits (181), Expect = 5e-15
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 400 VPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
VP P + T++ K + V+W P P G GY + T+ + E +
Sbjct: 104 VPTSPPKDVTVVSKEGKPKTIIVNWQP--PSEANGKITGYIIYYSTDVNAEIHDWVIEPV 161
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
G T ++ + + + ++ A N GP SE + F TP+
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHH 209
Score = 57.1 bits (138), Expect = 2e-09
Identities = 16/144 (11%), Positives = 35/144 (24%), Gaps = 45/144 (31%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWT--AMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLD 657
+P P V+ + + + I+W ++P+ + Y + W+ + A + +
Sbjct: 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTN--IPANTKYKNAN 60
Query: 658 WRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 717
++ YE
Sbjct: 61 ATTLSYLVTGLKPNTLYEF----------------------------------------- 79
Query: 718 RVLAFNGAYNGPPSEIISFVTPEG 741
V+ G + S T E
Sbjct: 80 SVMVTKGRRSSTWSMTAHGTTFEL 103
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 125 bits (316), Expect = 4e-33
Identities = 37/193 (19%), Positives = 57/193 (29%), Gaps = 30/193 (15%)
Query: 135 INAAEEETVTFEC---KASGLPEPEIHWVHNGKP-------------ISQAPPNPR---- 174
+ A E VT + S PE E+ W G I P
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 175 -RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
R + + S GNY C V K +++V+ ++ + D
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDF 119
Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKI---TDVAFADSGEY 285
+ +TC V P P V W+ + G + G L + +
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179
Query: 286 TCFARNKLGTAQG 298
TC +N A G
Sbjct: 180 TCVGKNDKEEAHG 192
Score = 121 bits (304), Expect = 1e-31
Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 9/165 (5%)
Query: 56 IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115
+ G I+ + P I + L++ S G+Y C + G E +
Sbjct: 38 VLIGRMHHDVIFIEW--PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETE-VT 94
Query: 116 YSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPR 174
LSV+ +V E + +T C + P P + W+ G + N
Sbjct: 95 KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG 154
Query: 175 RKVGPNR----ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ +L K C N + VYV+
Sbjct: 155 VMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG-VYVSGY 198
Score = 108 bits (271), Expect = 3e-27
Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 33/191 (17%)
Query: 233 GKTVVLTC---RVFGAPKPEVNWIHNQKELT------------------GGRYTILETGD 271
G+ V LT RV P+ EV+W G + I + +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 272 ---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328
L +T + G Y C + L+V + ++ E + T
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Query: 329 CNAVSDPSLKLSIVWLR--GSEPIDFESEPRFVQSNDYSLTVTKSSEL---DSGQYTCRA 383
C + P + WL G EP + ++ D SL+V L TC
Sbjct: 126 CTVNAFP--HPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183
Query: 384 QTELDFIEAQA 394
+ + + EA
Sbjct: 184 KNDKE--EAHG 192
Score = 54.7 bits (131), Expect = 1e-08
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 6/91 (6%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK----DGVPINPSDRISQGNYG 86
P V ++ + + C P P W + P + + + G
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 87 KSLI--IKHVEFSDQGSYTCEVSNGVGEAKS 115
+ + TC N EA
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Score = 50.4 bits (120), Expect = 4e-07
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
+ P + +V G + P + N + L
Sbjct: 27 SWFKLGPGEEQVLIG-RMHHDVIFIEWPFRGFFDIHRSA---------------NTFFLV 70
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
VT ++ G Y CR + + Q L+V P
Sbjct: 71 VTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP 104
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 121 bits (306), Expect = 7e-33
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGDLKIT 275
P I + P ++ T VL+C G+P P + W + + R LE G L+I
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSA 325
D+G YTC A G A S + V+E P + SA
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117
Score = 94.8 bits (236), Expect = 2e-23
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RI 182
P P A + T C A+G P P I W +G +S + R K N +
Sbjct: 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVS--TQDSRIKQLENGVL 64
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKD 227
I + DTG Y C A+ G Y+ V + P+
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF-GVPVQPPRP 108
Score = 81.4 bits (201), Expect = 1e-18
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
I P + V + C A P +I+W + + + R Q + L +
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSP--VPTILWRKDGVLVS-TQDSRIKQLENGVLQI 66
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ D+G+YTC A T A + VQ
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99
Score = 76.3 bits (188), Expect = 6e-17
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSY 102
+ L C+ G+P+P +W KDGV ++ D RI Q G L I++ + D G Y
Sbjct: 19 TVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG-VLQIRYAKLGDTGRY 77
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
TC S GEA ++S + V P +
Sbjct: 78 TCIASTPSGEA-TWSAYIEVQEFGVPVQPPRPTD 110
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 123 bits (309), Expect = 2e-32
Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI--------- 182
+ + + +TV C AS + HW ++ + GP+++
Sbjct: 2 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 183 ---------TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
I+NL+ D+ Y C + V V+ A D + + G
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLT---------ANSDTHLLQG 112
Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
+++ LT P V + I L ++ + DSG +TC
Sbjct: 113 QSLTLTLESPPGSSPSVQC------RSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ 166
Query: 294 GTAQGSGSLTV 304
+ + V
Sbjct: 167 KKVEFKIDIVV 177
Score = 109 bits (274), Expect = 8e-28
Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 37/188 (19%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-------------------SLII 91
VEL C Q W ++ S G LII
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72
Query: 92 KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG 151
K+++ D +Y CEV + E + L T + + + +++T ++
Sbjct: 73 KNLKIEDSDTYICEVEDQKEEVQLLVFGL--------TANSD-THLLQGQSLTLTLESPP 123
Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211
P + P + G +++ L D+G + C + V +
Sbjct: 124 GSSPSVQCRS---------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 174
Query: 212 VNVLAHAP 219
+ VLA
Sbjct: 175 IVVLAFQK 182
Score = 104 bits (261), Expect = 6e-26
Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 40/192 (20%)
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-------------------TGGRYTILET 269
G TV LTC + +W ++ + R ++ +
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 270 GD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF 327
G+ L I ++ DS Y C ++ V+ D + GQS T
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQ--------KEEVQLLVFGLTANSDTHLLQGQSLTL 117
Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
+ S+ +L+V++ DSG +TC
Sbjct: 118 TLESPPGS--SPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQ 166
Query: 388 DFIEAQATLTVQ 399
+E + + V
Sbjct: 167 KKVEFKIDIVVL 178
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 121 bits (304), Expect = 1e-31
Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 15/192 (7%)
Query: 225 PKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY-TILETGDLKITDVAFADS 282
P+ Y G +V LTC G P +W G+ T L + V+F +
Sbjct: 7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNE 66
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD-PSLKLSI 341
Y C A + + + + + +EAG+ T +C+ P +L I
Sbjct: 67 HSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126
Query: 342 VWLRGSEPIDFES-----EPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD-------F 389
L+G + + + + +++ +T T E CRA+ +D
Sbjct: 127 DLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTV 186
Query: 390 IEAQATLTVQVP 401
+A L V +
Sbjct: 187 RQAVKELQVYIS 198
Score = 101 bits (251), Expect = 2e-24
Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 15/184 (8%)
Query: 128 FTVEPEFINAAEE-ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
PE A+ ++V+ C +G P W S + + +T+
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQI--DSPLNGKVTNEGTTSTLTMNP 60
Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA- 245
+ + +Y C AT + K + V + + P+ E GK + + C V
Sbjct: 61 VSFGNEHSYLCTATCESRKLEKGIQVEIYSF-PKDPEIHLSGPLEAGKPITVKCSVADVY 119
Query: 246 --PKPEVNWIHNQKELTGGRYT------ILETGDLKITDVAFA--DSGEYTCFARNKLGT 295
+ E++ + + + LET L++T C A+ +
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 296 AQGS 299
Sbjct: 180 MDSV 183
Score = 89.1 bits (220), Expect = 2e-20
Identities = 25/196 (12%), Positives = 58/196 (29%), Gaps = 18/196 (9%)
Query: 42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
+ +A V L C G P W + + + +++ +L + V F ++ S
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHS 68
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG---LPEPEIH 158
Y C + + I + + + P + +T +C + EI
Sbjct: 69 YLCTATCESRKL-EKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEID 127
Query: 159 WVHNGKPIS-----QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY------ 207
+ + + + +T + + C A + +
Sbjct: 128 LLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVR 187
Query: 208 -KDVYVNVLAHAPEIT 222
+ V +P+ T
Sbjct: 188 QAVKELQVY-ISPKNT 202
Score = 50.2 bits (119), Expect = 4e-07
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 5/99 (5%)
Query: 309 HITDQPEDYE-VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
I PE + G S + C+ W + + + +LT
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCE--SPFFSWRTQID--SPLNGKVTNEGTTSTLT 57
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ S + Y C A E +E + + + P
Sbjct: 58 MNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPE 96
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 119 bits (300), Expect = 7e-31
Identities = 65/184 (35%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 560
+ VP + I + + W + ++ Y I++ T P Y
Sbjct: 3 QDVPNAPKLTG-ITCQADKAEIHWEQQGDNRSPILHYTIQFN----TSFTPASWDAAYEK 57
Query: 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV------PFKNPDNVEGRGST 614
P T S+ + + P Y + + K G S + PFKNPDNV G+G+
Sbjct: 58 VPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTE 117
Query: 615 PNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPY 674
PNNLVISWT MPEIEHNAP+F Y + W+R AW +++ DWRQ+ +V+A+QPTF Y
Sbjct: 118 PNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKY 177
Query: 675 EIKV 678
IKV
Sbjct: 178 LIKV 181
Score = 77.1 bits (190), Expect = 3e-16
Identities = 37/202 (18%), Positives = 60/202 (29%), Gaps = 16/202 (7%)
Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
VP AP + A KA + W R Y +Q + S
Sbjct: 3 QDVP-NAPKLTGI--TCQADKAEIHWEQ--QGDNRSPILHYTIQ-FNTSFTPASWDAAYE 56
Query: 458 NKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEI-ISFVTPEGVP-GTVQSLEAIP 514
+ ++ V + P + F RV+AFN PPS S T VP ++
Sbjct: 57 KVPNTDSSFVVQMSPWANYTF-RVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQG 115
Query: 515 LGSSAFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL 572
+ + W + N Y + ++ I D + +A
Sbjct: 116 TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN----IFDWRQNNIVIADQ 171
Query: 573 EPSTKYRIHLAGYTKAGDGAES 594
KY I + G+ +
Sbjct: 172 PTFVKYLIKVVAINDRGESNVA 193
Score = 47.4 bits (113), Expect = 4e-06
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
VP + P N Q + V+SW P+ Y V W + +
Sbjct: 102 DVPFKNPDNVV-GQGTEPNNLVISWTPMPEIEHNAPNFHYYVS-WKRDIPAAAWENNNIF 159
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
+ K +V+A N +
Sbjct: 160 DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGY 200
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 118 bits (296), Expect = 1e-30
Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 24/181 (13%)
Query: 141 ETVTFECKASGLPEPEIH--WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN 198
+ C + W+ G + + + + G Y C
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG------QKTEFKVDSDDQWGEYSCV 67
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQK 257
+ + P + E+ +G+T +L C+ P + W
Sbjct: 68 FLPEPM---GTANIQLHG-PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITD 123
Query: 258 EL-------TGGRYTILETGD---LKITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKE 306
+ R+ + + L I ++ D G+Y C + G+ Q +L V+
Sbjct: 124 SEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Query: 307 H 307
H
Sbjct: 184 H 184
Score = 117 bits (293), Expect = 2e-30
Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 17/177 (9%)
Query: 233 GKTVVLTCRVFGAPKPEVN--WIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFAR 290
G ++LTC + + W+ L L + + GEY+C
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---LPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 291 NKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE-- 348
+ G+ ++ + + + G++A C + S P + W + ++
Sbjct: 70 PE---PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAWYKITDSE 125
Query: 349 --PIDFESEPRFV---QSNDYSLTVTK-SSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ SE RF L + + E D GQY C + +A TL V+
Sbjct: 126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 112 bits (281), Expect = 9e-29
Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 20/185 (10%)
Query: 44 VALRNKKVELFCIFGGTPLPQT--IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
V K+ L C + T W K GV + G+ K G
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDSDDQWGE 63
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWV 160
Y+C + ++ + P + E ET CK+ +P + W
Sbjct: 64 YSCVFLPEPMG----TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY 119
Query: 161 HNGKPISQAPPN---PRRKVGPN----RITIENL-RKSDTGNYGCNATNSLGYVYKDVYV 212
+A N R V + + IENL ++D G Y CN T+S G + +
Sbjct: 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Query: 213 NVLAH 217
V +H
Sbjct: 180 RVRSH 184
Score = 58.1 bits (140), Expect = 7e-10
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 9/83 (10%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ 378
+ G C+ + WL+G + ++ P S+ G+
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP------GQKTEFKVDSDDQWGE 63
Query: 379 YTCRAQTELDFIEAQATLTVQVP 401
Y+C E A + + P
Sbjct: 64 YSCVFLPE---PMGTANIQLHGP 83
Score = 55.4 bits (133), Expect = 5e-09
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 11/110 (10%)
Query: 23 GISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINP----- 76
+A+ H P + + E + L C P W K +
Sbjct: 73 MGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG 132
Query: 77 -SDRISQGNYGK--SLIIKHVEF-SDQGSYTCEVSNGVGEAKSYSIDLSV 122
R + L I+++ +D G Y C ++ G ++ I L V
Sbjct: 133 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA-IITLRV 181
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 121 bits (305), Expect = 6e-30
Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 20/256 (7%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
+PL P+N L D VSW + GY++ T +G+ E +V+
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERSTT----PDITGYRITTTPTNGQQGNSLEEVVH- 55
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSA 519
+ ++ D P + V S IS VP + L + + S+
Sbjct: 56 ADQSSCTFDNLSPGLEYNVSVYTVKD---DKESVPISDTIIPEVPQ-LTDLSFVDITDSS 111
Query: 520 FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
L+W + ++GY+I + D + + GLEP Y
Sbjct: 112 IGLRWTPL--NSSTIIGYRITVVAAGEGI-----PIFEDFVDSSVGYYTVTGLEPGIDYD 164
Query: 580 IHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRI 639
I + G+ A + P ++ P+ + ++W P + + +
Sbjct: 165 ISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLV 220
Query: 640 FWRRHNTGEAWNQDDV 655
+ E + +
Sbjct: 221 RYSPVKNEEDVAELSI 236
Score = 112 bits (282), Expect = 5e-27
Identities = 53/341 (15%), Positives = 107/341 (31%), Gaps = 31/341 (9%)
Query: 341 IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIEAQA-TLTV 398
+ + S V ++ S T L G +Y T D E+ + T+
Sbjct: 36 RITTTPTNGQQGNSLEEVVHADQSSCTFD---NLSPGLEYNVSVYTVKDDKESVPISDTI 92
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
+ ++ + + + + W P++ GY++ T I E V+
Sbjct: 93 IPEVPQLTDLSFVDI-TDSSIGLRWTPLNS----STIIGYRI-TVVAAGEGIPIFEDFVD 146
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSS 518
T V P V+ P+ + L +G
Sbjct: 147 SSVGYYT-VTGLEPGIDYDISVITLINGGESAPTTLTQQTAV----PPPTDLRFTNIGPD 201
Query: 519 AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY 578
+ W P P+ L + ++Y VK + + P+ + L L P T+Y
Sbjct: 202 TMRVTWAPP--PSIDLTNFLVRYSPVKNEE-----DVAELSISPSDNAVVLTNLLPGTEY 254
Query: 579 RIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYR 638
+ ++ + + + +P ++ T N+ + W A A YR
Sbjct: 255 VVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIA-----PRATITGYR 309
Query: 639 IFWRRHNTGEAWNQDDVLDWRQSELVLAN-QPTFQPYEIKV 678
I + ++D + ++ + L N P Y + +
Sbjct: 310 IRHHPEHFSG-RPREDRVPHSRNSITLTNLTP-GTEYVVSI 348
Score = 94.5 bits (235), Expect = 7e-21
Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 24/240 (10%)
Query: 357 RFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTLIQVI 414
FV S+ TVT L+ G Y T ++ E A TLT Q + P++ +
Sbjct: 143 DFVDSSVGYYTVT---GLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNI- 198
Query: 415 DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS 474
V+W P P S + V ++ E + EL ++ + +P +
Sbjct: 199 GPDTMRVTWAP--PPS--IDLTNFLV-RYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGT 252
Query: 475 KNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVL 534
+ V + + P T + ++ + +++F + W P +
Sbjct: 253 EYVVSVSSVYEQHESTPLRG-RQKTG---LDSPTGIDFSDITANSFTVHW---IAPRATI 305
Query: 535 MGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
GY+I++ + + S L L P T+Y + + +
Sbjct: 306 TGYRIRHHPEHFSG-----RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL 360
Score = 65.2 bits (159), Expect = 2e-11
Identities = 27/239 (11%), Positives = 57/239 (23%), Gaps = 54/239 (22%)
Query: 503 VP-GTVQSLEAIPLGS-SAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 560
+P +L + W + P+ + GY+I G + L E +
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVH--- 55
Query: 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVI 620
+S L P +Y + + + ++ T +++ +
Sbjct: 56 -ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGL 114
Query: 621 SWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQ 680
WT + ++ YRI G +D +D + Y+I
Sbjct: 115 RWTPLN----SSTIIGYRITVVAAGEGI-PIFEDFVDSSVGYYTVTGLEPGIDYDI---- 165
Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 739
V+ P+ +
Sbjct: 166 -------------------------------------SVITLINGGESAPTTLTQQTAV 187
Score = 48.3 bits (115), Expect = 6e-06
Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 14/154 (9%)
Query: 353 ESEPRFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTL 410
+ + +D ++ +T L G +Y + + E + L++P+
Sbjct: 230 DVAELSISPSDNAVVLT---NLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDF 286
Query: 411 IQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKF 470
+ A V W R GY+++ + G RE V + +
Sbjct: 287 SDI-TANSFTVHWIAP-----RATITGYRIR-HHPEHFSGRPREDRVP-HSRNSITLTNL 338
Query: 471 VPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
P ++ ++A NG P I T
Sbjct: 339 TPGTEYVVSIVALNGREESPLL-IGQQSTVSAHH 371
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 117 bits (293), Expect = 1e-29
Identities = 33/242 (13%), Positives = 49/242 (20%), Gaps = 66/242 (27%)
Query: 129 TVEPEFINAAEEETVTFECK---ASGLPEPEIHWVHNGKPISQAPPNPRRKV-------- 177
+ TV C A+ P I W+ P
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 178 ----------------------GPNRITIENLRKSDTGNYGCNATNS-----LGYVYKDV 210
+ + ++ D G Y C G K V
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 211 YVNVLAHAPE---ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG------ 261
+ V H P + +G + +TC V W
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTY 185
Query: 262 -------------------GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSL 302
GR + +L I D+G C G S
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Query: 303 TV 304
T+
Sbjct: 246 TI 247
Score = 98.1 bits (243), Expect = 5e-23
Identities = 32/242 (13%), Positives = 53/242 (21%), Gaps = 64/242 (26%)
Query: 38 VTRKKEVALRNKKVELFCIF---GGTPLPQTIWSKDGVPINPSDRIS------------- 81
T + VEL C + T P W K P +
Sbjct: 7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFV 66
Query: 82 ------------------QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
+L + HV D G Y C+V+ + SV+
Sbjct: 67 ESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVV 126
Query: 124 --------AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR 175
+ E + E +T C + + W +
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQ 186
Query: 176 KVGPNR----------------------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
+ + I + +D G C G + D
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Query: 214 VL 215
+L
Sbjct: 247 IL 248
Score = 94.6 bits (234), Expect = 7e-22
Identities = 41/246 (16%), Positives = 62/246 (25%), Gaps = 70/246 (28%)
Query: 223 EAPKDEYTVD-GKTVVLTCRVF---GAPKPEVNWIHNQKELTG----------------- 261
E V G TV L C P ++W+
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 262 --------------GRYTILETGD--LKITDVAFADSGEYTCFARNK-----LGTAQGSG 300
GR ++ L++T V D G Y C G S
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 301 SLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID----- 351
L V HT E +V+ G T C ++ W G +
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA--NANVTWYTGPTFFENYETG 183
Query: 352 -----------------FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
E R S +L + + D+G+ C T ++A
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243
Query: 395 TLTVQV 400
+ T+
Sbjct: 244 SSTILK 249
Score = 48.8 bits (115), Expect = 2e-06
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 34/131 (25%)
Query: 310 ITDQPEDYEVEAGQSATFRCNA-VSDPSLKLSIVWLRGSEPI------------------ 350
+ + EV AG + C+ +++ + I WL+G+ P
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 351 ------------DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL---DFIEAQAT 395
DF +L +T D G+Y C+ +F +
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 124
Query: 396 LTVQVPLEAPS 406
+ ++V PS
Sbjct: 125 VVLKVTGHTPS 135
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 118 bits (298), Expect = 3e-29
Identities = 56/358 (15%), Positives = 114/358 (31%), Gaps = 32/358 (8%)
Query: 341 IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIEAQA-TLTV 398
+ + S V ++ S T L G +Y T D E+ + T+
Sbjct: 35 RITTTPTNGQQGNSLEEVVHADQSSCTFD---NLSPGLEYNVSVYTVKDDKESVPISDTI 91
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
+ P++ I V+W P + V ++ E + EL ++
Sbjct: 92 IPAVPPPTDLR-FTNIGPDTMRVTWAPPPS----IDLTNFLV-RYSPVKNEEDVAELSIS 145
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSS 518
+ +P ++ V + + P + + ++ + ++
Sbjct: 146 -PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----GRQKTGLDSPTGIDFSDITAN 200
Query: 519 AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY 578
+F + W P + GY+I++ + + S L L P T+Y
Sbjct: 201 SFTVHW---IAPRATITGYRIRHHPEHFSG-----RPREDRVPHSRNSITLTNLTPGTEY 252
Query: 579 RIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYR 638
+ + + P ++E +TP +L+ISW A P YR
Sbjct: 253 VVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDA-P----AVTVRYYR 307
Query: 639 IFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
I + G + Q+ + +S ++ Y I V T + G+ +
Sbjct: 308 ITYGETG-GNSPVQEFTVPGSKSTATISGLKPGVDYTIT-VYAVTGR-GDSPASSKPI 362
Score = 112 bits (281), Expect = 7e-27
Identities = 56/317 (17%), Positives = 103/317 (32%), Gaps = 34/317 (10%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
PL P+N L D VSW + GY++ T +G+ E +V+
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTT----PDITGYRITTTPTNGQQGNSLEEVVH-A 55
Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAF 520
+ ++ D P + V S IS VP L +G
Sbjct: 56 DQSSCTFDNLSPGLEYNVSVYTVKD---DKESVPISDTIIPAVPP-PTDLRFTNIGPDTM 111
Query: 521 YLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
+ W P P+ L + ++Y VK + + P+ + L L P T+Y +
Sbjct: 112 RVTWAPP--PSIDLTNFLVRYSPVKNEE-----DVAELSISPSDNAVVLTNLLPGTEYVV 164
Query: 581 HLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIF 640
++ + + + +P ++ T N+ + W A A YRI
Sbjct: 165 SVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIA-----PRATITGYRIR 219
Query: 641 WRRHNTGEAWNQDDVLDWRQSELVLAN-QPTFQPYEIKV----------VQTWTEKDGEG 689
++D + ++ + L N P Y + + + +
Sbjct: 220 HHP-EHFSGRPREDRVPHSRNSITLTNLTP-GTEYVVSIVALNGREESPLLIGQQSTVSD 277
Query: 690 SIRELIVNKGESTTTEV 706
R+L V T+ +
Sbjct: 278 VPRDLEVVAATPTSLLI 294
Score = 71.4 bits (175), Expect = 2e-13
Identities = 24/238 (10%), Positives = 56/238 (23%), Gaps = 53/238 (22%)
Query: 504 PGTVQSLEAIPLG-SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
+L + + W + P+ + GY+I G + L E +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVH----A 55
Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISW 622
+S L P +Y + + + P ++ P+ + ++W
Sbjct: 56 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTW 115
Query: 623 TAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTW 682
P + + + + E + + + +VL N Y +
Sbjct: 116 APPP----SIDLTNFLVRYSPVKNEEDVAELSI-SPSDNAVVLTNLLPGTEYVV------ 164
Query: 683 TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
V + + P +
Sbjct: 165 -----------------------------------SVSSVYEQHESTPLRGRQKTGLD 187
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 112 bits (282), Expect = 6e-29
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 20/184 (10%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITI 184
+EP++ + E+++VT +C+ + PE W HN IS + I
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------ASSYFI 58
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF- 243
+ +D+G Y C S V + V + +AP+ + + L C +
Sbjct: 59 DAATVNDSGEYRCQTNLSTL--SDPVQLEVH-IGWLLLQAPRWVFKE-EDPIHLRCHSWK 114
Query: 244 GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ-GSGSL 302
+V ++ N K+ D I DSG Y C + ++
Sbjct: 115 NTALHKVTYLQNGKDRKYFH----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
Query: 303 TVKE 306
T+ +
Sbjct: 171 TITQ 174
Score = 93.0 bits (231), Expect = 5e-22
Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 19/183 (10%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDV 277
+ P+ ++ +V L C+ +P+ W HN+ ++ + I
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAA 61
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSL 337
DSGEY C + L V + P E RC++ + +L
Sbjct: 62 TVNDSGEYRCQTNLSTLSD--PVQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTAL 118
Query: 338 KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATL 396
+ +L+ + + ++ + K++ DSG Y CR + +
Sbjct: 119 -HKVTYLQNGKDRKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
Query: 397 TVQ 399
T+
Sbjct: 171 TIT 173
Score = 89.5 bits (222), Expect = 8e-21
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 22/168 (13%)
Query: 50 KVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
V L C +P + W + I+ S I +D G Y C+ +
Sbjct: 24 SVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------SYFIDAATVNDSGEYRCQTNL 75
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPIS 167
S + L V P ++ EE+ + C + ++ ++ NGK
Sbjct: 76 ST---LSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK 131
Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNV 214
N I D+G+Y C V + V + +
Sbjct: 132 YFHHNS-------DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 57.6 bits (139), Expect = 7e-10
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 42 KEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
+ V + L C + T L + + ++G ++ I D G
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHNSDFHIPKATLKDSG 150
Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
SY C G S ++++++
Sbjct: 151 SYFCRGLVGSKNVSSETVNITI 172
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 109 bits (275), Expect = 6e-29
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGDLKIT 275
P I + P ++ T +L C+ G P P ++W+ R TI E G L+I
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
++ +D+G YTC A + G S L V E
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 95.2 bits (237), Expect = 1e-23
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-I 182
P P A + T +CKA+G P P I W+ G +PR + +
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP--GRDPRATIQEQGTL 64
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
I+NLR SDTG Y C AT+S G ++V
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100
Score = 78.2 bits (193), Expect = 9e-18
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
I P + + +A +C A DP I WL+ +PR +L +
Sbjct: 10 IILQGPANQTLAVDGTALLKCKATGDP--LPVISWLKEGFTFP-GRDPRATIQEQGTLQI 66
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
D+G YTC A + A L V
Sbjct: 67 KNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 70.5 bits (173), Expect = 4e-15
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSY 102
+ L C G PLP W K+G D R + G +L IK++ SD G+Y
Sbjct: 19 TLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG-TLQIKNLRISDTGTY 77
Query: 103 TCEVSNGVGEAKSYSIDLSVLAA 125
TC ++ GE S+S L V +
Sbjct: 78 TCVATSSSGET-SWSAVLDVTES 99
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 109 bits (274), Expect = 1e-28
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 208 KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTI 266
+ + A I P+ +G++ +C G P P V W+ + L+ R+ +
Sbjct: 4 HHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQV 63
Query: 267 LETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
T +I+ V +D G Y+ N G + +LT+++
Sbjct: 64 TTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 88.2 bits (219), Expect = 3e-21
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-- 177
A +P + E E+ F C G P P + W+ G+ +S + R +V
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS---TSARHQVTT 65
Query: 178 --GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+ I +++ SD GNY NS G + + +
Sbjct: 66 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 77.4 bits (191), Expect = 2e-17
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ C G P+P W + G ++ S R ++ Y + I V+ SD+G+
Sbjct: 25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGN 84
Query: 102 YTCEVSNGVGEAKSYSIDLSV 122
Y+ V N G+ ++ L++
Sbjct: 85 YSVVVENSEGKQEA-EFTLTI 104
Score = 73.5 bits (181), Expect = 4e-16
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF---VQSNDYS 365
I +P V G+SA F C+ +P ++ WLR + + + R +
Sbjct: 16 RILTKPRSMTVYEGESARFSCDTDGEP--VPTVTWLRKGQVL--STSARHQVTTTKYKST 71
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
++ D G Y+ + EA+ TLT+Q
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 109 bits (274), Expect = 2e-28
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
S T E VPG V L + ++ + W +P + NG+L GY+I ++ T
Sbjct: 3 SGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN 62
Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
R+ + T ++ GL T Y I +A T G G S
Sbjct: 63 -----TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA 104
Score = 45.5 bits (108), Expect = 4e-06
Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 7/107 (6%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
VP + + I VSW P G GY++ W E + + +
Sbjct: 17 VP-GPVGHLS-FSEILDTSLKVSWQE--PGEKNGILTGYRIS-WEEYNRTNTRVTHYL-P 70
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE-IISFVTPEGVPG 505
+ V + V A G S IS P P
Sbjct: 71 NVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGPS 117
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 111 bits (279), Expect = 2e-28
Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 20/183 (10%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITI 184
+EP +IN +E++VT C+ + PE + I W HNG I
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP---------SYR 55
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF- 243
+D+G Y C + + V++ VL + + P E+ G+T++L C +
Sbjct: 56 FKANNNDSGEYTCQTGQT--SLSDPVHLTVL-FEWLVLQTPHLEFQE-GETIMLRCHSWK 111
Query: 244 GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ-GSGSL 302
P +V + N K I + SG+Y C ++
Sbjct: 112 DKPLVKVTFFQNGKSQKFSH----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTI 167
Query: 303 TVK 305
TV+
Sbjct: 168 TVQ 170
Score = 98.4 bits (245), Expect = 6e-24
Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 19/183 (10%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDV 277
+ P + +V LTC+ +P+ + + W HN + T
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT------HTQPSYRFKA 58
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSL 337
DSGEYTC + LTV + Q E + G++ RC++ D L
Sbjct: 59 NNNDSGEYTCQTGQTSLSD--PVHLTVLFEWLVL-QTPHLEFQEGETIMLRCHSWKDKPL 115
Query: 338 KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATL 396
+ + + + + F D + ++ +++ SG Y C F T+
Sbjct: 116 -VKVTFFQNGKSQKF-------SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTI 167
Query: 397 TVQ 399
TVQ
Sbjct: 168 TVQ 170
Score = 96.8 bits (241), Expect = 2e-23
Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 22/168 (13%)
Query: 50 KVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
V L C W +G I + +D G YTC+
Sbjct: 21 SVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------PSYRFKANNNDSGEYTCQTGQ 72
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPIS 167
+ S + L+VL P + E ET+ C + P ++ + NGK
Sbjct: 73 T---SLSDPVHLTVLFEWLVLQTPH-LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK 128
Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNV 214
+ +P +I S +G+Y C K V + V
Sbjct: 129 FSHLDP-------TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 60.2 bits (146), Expect = 1e-10
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 41 KKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQ 99
+ + L C + PL + + ++G S + + I S
Sbjct: 93 PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS------HLDPTFSIPQANHSHS 146
Query: 100 GSYTCEVSNGVGEAKSYSIDLSV 122
G Y C + G S + ++V
Sbjct: 147 GDYHCTGNIGYTLFSSKPVTITV 169
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 113 bits (285), Expect = 4e-28
Identities = 50/298 (16%), Positives = 93/298 (31%), Gaps = 25/298 (8%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
L + AP++ QV W P + GY+V+ T K+ G
Sbjct: 10 SGLEVLFQGPAIPAPTDLKFTQV-TPTSLSAQWTPPN-----VQLTGYRVR-VTPKEKTG 62
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSL 510
++E+ + +S++ V + A+K V A P++ + +
Sbjct: 63 PMKEINLA-PDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLEN--VSPPRRA 119
Query: 511 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 570
+ + W + G+++ G + P S +
Sbjct: 120 RVTDATETTITISW---RTKTETITGFQVDAVPANGQ------TPIQRTIKPDVRSYTIT 170
Query: 571 GLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEH 630
GL+P T Y+I+L + P N+ +TPN+L++SW P
Sbjct: 171 GLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQP-P---- 225
Query: 631 NAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGE 688
A Y I + + +E + Y I V+ + E
Sbjct: 226 RARITGYIIKYEKPG-SPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE 282
Score = 69.1 bits (169), Expect = 6e-13
Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 58/257 (22%)
Query: 487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKG 546
++ S + + L+ + ++ +W PN L GY+++ +
Sbjct: 4 HHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQW---TPPNVQLTGYRVRVTPKEK 60
Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG--AESKYLFYVPFKN 604
T P ++S ++GL +TKY + + A+
Sbjct: 61 TG-----PMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP 115
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P +T + ISW +++ N G+ Q +
Sbjct: 116 PRRARVTDATETTITISWRT-----KTETITGFQVDAVPAN-GQTPIQRTI--------- 160
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
K + + + P + + N
Sbjct: 161 ---------------------------------KPDVRSYTITGLQPGTDYKIYLYTLND 187
Query: 725 AYNGPPSEIISFVTPEG 741
P I + +
Sbjct: 188 NARSSPVVIDASTAIDA 204
Score = 45.6 bits (108), Expect = 3e-05
Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 26/181 (14%)
Query: 327 FRCNAVSDPSLKLSIVWLRGSEPID-----------FESEPRFVQSNDYSLTVTKSSELD 375
R ++ ++ +S W +E I R ++ + S T+T L
Sbjct: 119 ARVTDATETTITIS--WRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTIT---GLQ 173
Query: 376 SG-QYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG 433
G Y T D + + ++APSN + +VSW P R
Sbjct: 174 PGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLAT-TPNSLLVSWQPP-----RA 227
Query: 434 HFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493
GY + + + + + T + P ++ V+A P
Sbjct: 228 RITGYII-KYEKPGSPPR-EVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLI 285
Query: 494 I 494
Sbjct: 286 G 286
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 106 bits (266), Expect = 2e-27
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD---- 271
AP P+ + ++G +V L C++ P P++ W N + + R ++ +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
L I DV D+G YT A N+ G + L V + T
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQT 114
Score = 94.4 bits (235), Expect = 3e-23
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQA 169
+G + AP F +P+ E ++V EC+ S +P P++ W N + +
Sbjct: 1 MGHHHHHH-SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQ-- 57
Query: 170 PPNPRRKV-----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT 222
R + G + I+++ K D G Y +A N G + ++V A P T
Sbjct: 58 FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA-RPNQT 114
Score = 81.7 bits (202), Expect = 8e-19
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 293 LGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
+G S K +P+ +V G S C + P + W R +E + F
Sbjct: 1 MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIP--PPKLFWKRNNEMVQF 58
Query: 353 ESEPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
++ + ++ +L + ++ D+G YT A E L V
Sbjct: 59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 77.1 bits (190), Expect = 3e-17
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGK-SLIIKHVEFSDQ 99
L V+L C P P+ W ++ + + + Q N G+ +L+IK V D
Sbjct: 26 KVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDA 85
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV 130
G YT N G + L V A P T+
Sbjct: 86 GWYTVSAVNEAGVTTC-NTRLDVTARPNQTL 115
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 108 bits (272), Expect = 3e-27
Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 20/184 (10%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITI 184
+EP++ E+++VT +C+ + PE + W HN IS + I
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS---------QASSYFI 58
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG 244
+ D+G Y C S + V + V + +AP+ + + L C +
Sbjct: 59 DAATVDDSGEYRCQTQLS--TLSDPVQLEVH-IGWLLLQAPRWVFKE-EDPIHLRCHSWK 114
Query: 245 APKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG-SL 302
+V ++ N K D I DSG Y C +
Sbjct: 115 NTALHKVTYLQNGKGRKYFH----HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQI 170
Query: 303 TVKE 306
T+ +
Sbjct: 171 TITQ 174
Score = 90.3 bits (224), Expect = 7e-21
Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 19/176 (10%)
Query: 233 GKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARN 291
+V L C+ +P+ + W HN+ ++ + I DSGEY C +
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISS------QASSYFIDAATVDDSGEYRCQTQL 75
Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
+ L V + P E RC++ + +L + +L+ +
Sbjct: 76 STLSD--PVQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTAL-HKVTYLQNGKGRK 131
Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATLTVQVPLEAPS 406
+ ++ + K++ DSG Y CR + +T+ L +
Sbjct: 132 Y-------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180
Score = 89.2 bits (221), Expect = 2e-20
Identities = 31/181 (17%), Positives = 52/181 (28%), Gaps = 24/181 (13%)
Query: 50 KVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
V L C +P Q+ W + I+ S I D G Y C+
Sbjct: 24 SVTLKCQGAYSPEDQSTQWFHNESLISSQAS--------SYFIDAATVDDSGEYRCQTQL 75
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPIS 167
S + L V P ++ EE+ + C + ++ ++ NGK
Sbjct: 76 ST---LSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK 131
Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD---VYVNVLAHAPEITEA 224
N I D+G+Y C V + + + I+
Sbjct: 132 YFHHNS-------DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSF 184
Query: 225 P 225
Sbjct: 185 F 185
Score = 56.8 bits (137), Expect = 2e-09
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 42 KEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
+ V + L C + T L + + ++G ++ I D G
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF------HHNSDFYIPKATLKDSG 150
Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF 134
SY C G S ++ +++ + F
Sbjct: 151 SYFCRGLVGSKNVSSETVQITITQGLAVSTISSF 184
Score = 46.8 bits (111), Expect = 7e-06
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
+ +P+ Y V S T +C P S W I S S +
Sbjct: 10 VFLEPQWYRVLEKDSVTLKCQGAYSPE-DQSTQWFHNESLI---------SSQASSYFID 59
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
++ DSG+Y C+ Q + L V +
Sbjct: 60 AATVDDSGEYRCQTQL--STLSDPVQLEVHIG 89
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 109 bits (272), Expect = 4e-27
Identities = 37/210 (17%), Positives = 62/210 (29%), Gaps = 23/210 (10%)
Query: 119 DLSVLAAPYFTVEPE--FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK 176
D + + +I + +TV C S + P + P+ R
Sbjct: 1 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSL-CARYPEKRFVPDGNRI 58
Query: 177 VGPNR--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT---EAPKDEYTV 231
++ TI + S G C A + +Y+ V+
Sbjct: 59 SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 118
Query: 232 DGKTVVLTCRVFGAPKPEVN--WIHNQKEL------------TGGRYTILETGDLKITDV 277
G+ +VL C ++ W + + G L I V
Sbjct: 119 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 178
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
+D G YTC A + L T + S + V E
Sbjct: 179 TRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
Score = 101 bits (253), Expect = 1e-24
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 20/202 (9%)
Query: 219 PEITEAPKDEYTV--DGKTVVLTCRVFGAPKPEVNWIHNQKELT----GGRYTILETGDL 272
+++ Y KTVV+ C V+ E G R +
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD----QPEDYEVEAGQSATFR 328
I + +G C A+ + Q + V I D E+ G+
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 329 CNAVSDPSLKLSIVWLRGSEPIDFES---------EPRFVQSNDYSLTVTKSSELDSGQY 379
C A ++ ++ + W S + ++ +LT+ + D G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 380 TCRAQTELDFIEAQATLTVQVP 401
TC A + L + + V
Sbjct: 187 TCAASSGLMTKKNSTFVRVHED 208
Score = 97.9 bits (243), Expect = 2e-23
Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 15/189 (7%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDG-VPINPSDRISQGNYGKSLIIKHVEFSDQGSY 102
+NK V + C+ + L ++ ++ P + K I S G
Sbjct: 20 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMV 79
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTV---EPEFINAAEEETVTFECKASGLPEP--EI 157
CE +S + V+ + V I + E + C A +
Sbjct: 80 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139
Query: 158 HWVHNGKPISQAPPNPRRKVGP---------NRITIENLRKSDTGNYGCNATNSLGYVYK 208
+W + R + +TI+ + +SD G Y C A++ L
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199
Query: 209 DVYVNVLAH 217
+V V
Sbjct: 200 STFVRVHED 208
Score = 45.6 bits (107), Expect = 2e-05
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
Query: 310 ITDQPEDYEVEA--GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
++DQ + ++ C S +L +S+ + R + T
Sbjct: 10 VSDQHGVVYITENKNKTVVIPCL-GSISNLNVSLCARYPEKRF-VPDGNRISWDSKKGFT 67
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ +G C A+ + ++ + V V
Sbjct: 68 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 106
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 111 bits (278), Expect = 4e-27
Identities = 53/348 (15%), Positives = 98/348 (28%), Gaps = 65/348 (18%)
Query: 399 QVPLEAPSNFTLIQVIDAKKA---VVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
P +APS + I + + W + P G Y+V + ++
Sbjct: 2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTL---TRWKSHLQNY 58
Query: 456 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPL 515
VN T++ + + A + N + + V L+A P
Sbjct: 59 TVN-----ATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP- 112
Query: 516 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
+ +++W P + Y +++ V K + + + L S
Sbjct: 113 KDNMLWVEW---TTPRESVKKYILEWC-VLSDKAPCITDWQQ-EDGTVHRTYLRGNLAES 167
Query: 576 TKYRIHLAGYTKAGDGAESKYLFYVPFKNPD---NVEGRGSTPNNLVISWTAMPEIEHNA 632
Y I + G G+ Y+ P V + N V+ W +P N
Sbjct: 168 KCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNG 227
Query: 633 PHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIR 692
Y IF+R T +D +E L++ + Y +
Sbjct: 228 FIRNYTIFYR---TIIGNETAVNVDSSHTEYTLSSLTSDTLYMV---------------- 268
Query: 693 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
R+ A+ E +F TP+
Sbjct: 269 -------------------------RMAAYTDEGGKDGPE-FTFTTPK 290
Score = 66.0 bits (161), Expect = 6e-12
Identities = 32/249 (12%), Positives = 61/249 (24%), Gaps = 64/249 (25%)
Query: 500 PEGVPGTVQSLE-AIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
P P ++ + G L W + P + NG ++ Y++ K
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH--------- 54
Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES----KYLFYVPFKNPDNVEGRG 612
+ + T + KL + +Y L G + + +++
Sbjct: 55 --LQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP 112
Query: 613 STPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQ 672
N L + WT E KY + W + + DW+Q
Sbjct: 113 -KDNMLWVEWTTPRE-----SVKKYILEWCVLSDKA----PCITDWQQ------------ 150
Query: 673 PYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 732
+ T + V G P
Sbjct: 151 -----------------------EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPES 187
Query: 733 IISFVTPEG 741
I ++ +
Sbjct: 188 IKAY-LKQA 195
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 104 bits (261), Expect = 6e-27
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL-ETGDLKITD 276
AP + KD ++G+ VL C V G P P + W+ N + + R T +L I D
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
D G YTC A N LG S +TV
Sbjct: 71 ALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 89.3 bits (222), Expect = 1e-21
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 117 SIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK 176
S + AP F+ + E + +C G P P I W+ NG+PI A +
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR--STCE 60
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
G + I++ D G Y C A N+LG V +V V
Sbjct: 61 AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 79.3 bits (196), Expect = 4e-18
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF 358
SGS ++ + +D V GQ +C+ P I WL +PI +
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTP--VPRITWLLNGQPI--QYARST 58
Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
++ L + + D G YTC A+ L + A +TV
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 71.6 bits (176), Expect = 2e-15
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
+ + L C GTP+P+ W +G PI + + L I+ D G+YT
Sbjct: 22 AVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA-ELHIQDALPEDHGTYT 80
Query: 104 CEVSNGVGEAKSYSIDLSV 122
C N +G+ S ++V
Sbjct: 81 CLAENALGQVSC-SAWVTV 98
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 104 bits (261), Expect = 6e-27
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGD--- 271
P+I P D +GK + + C G P PEV W +++ GR+ I T D
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
L I DV D G YT N+ G+ + ++ ++
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 88.1 bits (219), Expect = 3e-21
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN---- 180
P P I+ E + +T C +G P PE+ W G+ I + R +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKI-HSQEQGRFHIENTDDLT 63
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ I +++K D G Y + N G V +++ +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 73.5 bits (181), Expect = 4e-16
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
I P D ++ G+ T C +P + W G I + + RF N +
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEP--TPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
L + + D G YT E A + ++
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 73.1 bits (180), Expect = 6e-16
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKSLIIKHVEFSDQGSYT 103
K + + C F G P P+ WS G I+ + I + +LII V+ D G YT
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYT 79
Query: 104 CEVSNGVGEAKSYSIDLSVLA 124
+ N G + ++++ + +
Sbjct: 80 LSLGNEFGSDSA-TVNIHIRS 99
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 103 bits (259), Expect = 9e-27
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
P I +D + G P+P W + K +T GG+Y + E L+
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
I +DSG YTC +N G+ S LT+K
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 87.3 bits (217), Expect = 5e-21
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---- 177
+ + P + + + F KA+G P P W +GK I+ + K+
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT---QGGKYKLSEDK 59
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
G + I SD+G Y C NS G V + + A
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 73.9 bits (182), Expect = 2e-16
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ + G P P IW+KDG I + +S+ G L I + SD G
Sbjct: 17 TVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGL 76
Query: 102 YTCEVSNGVGEAKSYSIDLSVLA 124
YTC V N G S S L++ A
Sbjct: 77 YTCTVKNSAGSVSS-SCKLTIKA 98
Score = 70.4 bits (173), Expect = 5e-15
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
I +D V + A F A +P + + +W + + I ++ S D +
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKATGEP--RPTAIWTKDGKAI--TQGGKYKLSEDKGGFF 63
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
L + K+ DSG YTC + + + LT++
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 107 bits (269), Expect = 1e-26
Identities = 39/222 (17%), Positives = 64/222 (28%), Gaps = 18/222 (8%)
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
Y + + + ++ P G C + P +I
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQG-------PVAVYTWEGNQVNITCEVFAYP--SATIS 51
Query: 343 WLRGSEPIDFESEPRFVQSNDYS---LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
W R + + + N S L VT SE D G Y C A + + L
Sbjct: 52 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH-FRGYKVQTWTE-KDGEGSIRELIV 457
+PS + + A V ++ P++ G YK + ++ S
Sbjct: 112 DTPSSPSIDQVEPY--SSTAQVQFDE--PEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 167
Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
+ P + R+ A NG G S F T
Sbjct: 168 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
Score = 88.3 bits (219), Expect = 4e-20
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 14/120 (11%)
Query: 193 GNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW 252
Y ++ + +AP++ + P YT +G V +TC VF P ++W
Sbjct: 1 ATYAAASSALVP-------RGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISW 52
Query: 253 IHNQKELTGG---RYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ + L I T L++T + D G Y C A N++G L +
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112
Score = 80.6 bits (199), Expect = 2e-17
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 24/148 (16%)
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHW 159
+Y S V S + AP P + E V C+ P I W
Sbjct: 1 ATYAAASSALVPRG-------SHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISW 52
Query: 160 VHNGKPISQAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
+G+ + P + + + + + ++D GNY C A N +G + +
Sbjct: 53 FRDGQLL---PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Query: 214 VLAH--APEITEAPKDEYTVDGKTVVLT 239
+P I + T +
Sbjct: 110 QADTPSSPSIDQV-----EPYSSTAQVQ 132
Score = 71.8 bits (176), Expect = 2e-14
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 12/100 (12%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYG 86
P Y +V + C P W +DG + S+ I
Sbjct: 23 QGPVAVYT-------WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75
Query: 87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
L + +D G+Y C N +G+ S L P
Sbjct: 76 SYLEVTPDSENDFGNYNCTAVNRIGQE-SLEFILVQADTP 114
Score = 33.6 bits (77), Expect = 0.16
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERL 556
+ P + + P S+A +++ +PE GV ++ YK ++++V
Sbjct: 108 LVQADTPSSPSIDQVEPYSSTAQ-VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 166
Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
+ GL+P T Y + LA G G
Sbjct: 167 K--EASMEGIVTIVGLKPETTYAVRLAALNGKGLG 199
Score = 28.3 bits (63), Expect = 7.4
Identities = 19/125 (15%), Positives = 28/125 (22%), Gaps = 40/125 (32%)
Query: 614 TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQP 673
+ + + PE P KY+ WR E W+
Sbjct: 125 YSSTAQVQFDE-PEATGGVPILKYKAEWRAVGE-EVWHSK-------------------- 162
Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
W + + P + R+ A NG G S
Sbjct: 163 --------WYD----------AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204
Query: 734 ISFVT 738
F T
Sbjct: 205 SEFKT 209
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 106 bits (265), Expect = 1e-26
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 20/188 (10%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPN 180
V P ++ P + + E VT C + E W HNG + +
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-------- 52
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
+ I N + D+G Y C + VY+ V + + E ++G+ + L C
Sbjct: 53 -LNIVNAKFEDSGEYKCQHQQV--NESEPVYLEVFSDWLLLQ--ASAEVVMEGQPLFLRC 107
Query: 241 RVF-GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGS 299
+ +V + + + L E ++ IT+ DSG Y C + +
Sbjct: 108 HGWRNWDVYKVIYYKDGEALK----YWYENHNISITNATVEDSGTYYCTGKVWQLDYESE 163
Query: 300 G-SLTVKE 306
++TV +
Sbjct: 164 PLNITVIK 171
Score = 98.8 bits (246), Expect = 5e-24
Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 19/188 (10%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKI 274
P+++ P G+ V LTC + W HN L I
Sbjct: 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNI 55
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
+ F DSGEY C + + L V + Q V GQ RC+ +
Sbjct: 56 VNAKFEDSGEYKCQHQQVNESE--PVYLEVFSDWLLL-QASAEVVMEGQPLFLRCHGWRN 112
Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQ 393
+ +++ + E + + ++++++T ++ DSG Y C + D+
Sbjct: 113 WDV-YKVIYYKDGEALKY-------WYENHNISITNATVEDSGTYYCTGKVWQLDYESEP 164
Query: 394 ATLTVQVP 401
+TV
Sbjct: 165 LNITVIKA 172
Score = 90.7 bits (225), Expect = 3e-21
Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 29/182 (15%)
Query: 50 KVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
V L C + T W +G ++ SL I + +F D G Y C+
Sbjct: 21 NVTLTCNGNNFFEVSSTKWFHNGSLSEETNS--------SLNIVNAKFEDSGEYKCQHQQ 72
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPIS 167
+S + L V + ++ E + + C ++ + +G+ +
Sbjct: 73 V---NESEPVYLEVFSDW-LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128
Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPK 226
N I+I N D+G Y C + + + V +AP+
Sbjct: 129 YWYENH-------NISITNATVEDSGTYYCTGKVWQLDYESEPLNITV-------IKAPR 174
Query: 227 DE 228
++
Sbjct: 175 EK 176
Score = 63.4 bits (154), Expect = 9e-12
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS 88
+ EV + + + L C + + + I+ KDG + +
Sbjct: 82 EVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE------NHN 135
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
+ I + D G+Y C + +S ++++V+ AP
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 103 bits (258), Expect = 2e-26
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
APY+T +E TV F C A G P P + W+ NGK Q KV
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 180 N--RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
+ +E++ SD GNY C N G + +++V+
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 87.9 bits (218), Expect = 4e-21
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 216 AHAPEITEAPKDE---YTV-DGKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTI 266
AP T K E + V TV C G P P + W+ N KE GG
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+ L + V +D G YTC N+ G+ + L V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 76.7 bits (189), Expect = 3e-17
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 29 NRHAP---KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQ 82
N+ AP + + ++ V+ C GG P+P W K+G RI
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 83 GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
N SLI++ V SD+G+YTC V N G +++ L V+
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVV 100
Score = 67.9 bits (166), Expect = 3e-14
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES--EPRFVQSNDYSLT 367
+ + V A + FRC A +P ++ WL+ + E V++ +SL
Sbjct: 11 EKMEKRLHAVPAANTVKFRCPAGGNP--MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 68
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
+ D G YTC + E I L V
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 104 bits (261), Expect = 2e-26
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 10/142 (7%)
Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAH-----APEITEAPKDEYTVDGKTVVLTCRVF 243
+ +G+ + N+ +D ++ +A P T+ D V+G C+V
Sbjct: 7 RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE 66
Query: 244 GAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQG 298
G P PEV W + + + I + L I++V D +YTC A N LG A
Sbjct: 67 GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Query: 299 SGSLTVKEHTHITDQPEDYEVE 320
+ L V+ + + E +
Sbjct: 127 TAELLVETMGKEGEGEGEGEED 148
Score = 94.1 bits (234), Expect = 1e-22
Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 12/145 (8%)
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSY---SIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
+ + S + +N V ++ + PYFT + E F+C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 148 KASGLPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATNS 202
K G P+PE+ W + P+ + ++ G +TI + D Y C A NS
Sbjct: 64 KVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120
Query: 203 LGYVYKDVYVNVLAHAPEITEAPKD 227
LG + V + E +
Sbjct: 121 LGEATCTAELLVET-MGKEGEGEGE 144
Score = 78.0 bits (192), Expect = 4e-17
Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 12/141 (8%)
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI----TDQPEDYEVEAGQSATFRC 329
++ + S + NK+ +E H+ T D EV G +A F C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFV----QSNDYSLTVTKSSELDSGQYTCRAQT 385
P ++W + P+ + F + + SLT+++ D +YTC+A
Sbjct: 64 KVEGYP--DPEVMWFKDDNPV--KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119
Query: 386 ELDFIEAQATLTVQVPLEAPS 406
L A L V+ +
Sbjct: 120 SLGEATCTAELLVETMGKEGE 140
Score = 71.0 bits (174), Expect = 1e-14
Identities = 31/137 (22%), Positives = 45/137 (32%), Gaps = 16/137 (11%)
Query: 21 ATGISASQNRHAPKQQYVTRKKEVA------LRNKKV------ELFCIFGGTPLPQTIWS 68
+ +N A ++ K V + + +V C G P P+ +W
Sbjct: 17 PINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWF 76
Query: 69 KDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
KD P+ S SL I V D YTC+ N +GEA + +L V
Sbjct: 77 KDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC-TAELLVETM 135
Query: 126 PYFTVEPEFINAAEEET 142
EEE
Sbjct: 136 GKEGEGEGEGEEDEEEE 152
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 102 bits (256), Expect = 3e-26
Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD-- 271
L HAP IT + G+ V P EV W HN EL + T
Sbjct: 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
L+I D DSG Y N G A +L V
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 80.4 bits (199), Expect = 1e-18
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-- 177
++ AP T+ + F P E+ W HNG + + +
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ---ESSKIHYTN 59
Query: 178 --GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
G + I + D+G Y TN G ++V
Sbjct: 60 TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 73.9 bits (182), Expect = 3e-16
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCE 105
+ P + W +GV + S + + + +L I D G+Y
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82
Query: 106 VSNGVGEAKSYSIDLSVLAAPY 127
+N GEA L V Y
Sbjct: 83 CTNYKGEASD-YATLDVTGGDY 103
Score = 67.7 bits (166), Expect = 5e-14
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
G T+ IT + + V GQ+ F N S P + W + + +
Sbjct: 1 GPFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKP--TAEVKWYHNGVEL--QESSKIH 56
Query: 360 QSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+N +L + DSG Y ATL V
Sbjct: 57 YTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 103 bits (258), Expect = 3e-26
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 482 AFNGAYNGPPS-EIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIK 540
+ +G PS I T + VPG + + +++ L W P PNG+++ Y+I
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQIT 64
Query: 541 YQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
++ T +E L P+ GL+P + Y + T+ G G ++
Sbjct: 65 HRLNTTTANTATVEVLA----PSARQYTATGLKPESVYLFRITAQTRKGWGEAAE 115
Score = 48.2 bits (115), Expect = 5e-07
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 5/102 (4%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
VP P +V + W P P + G Y++ + ++
Sbjct: 27 VP-GPPMGILFPEV-RTTSVRLIWQP--PAAPNGIILAYQITHRLNTTTANTATVEVLA- 81
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
+ P S R+ A G +E + T +
Sbjct: 82 PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 123
Score = 34.3 bits (79), Expect = 0.037
Identities = 23/164 (14%), Positives = 38/164 (23%), Gaps = 50/164 (30%)
Query: 583 AGYTKAGDGAES------KYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFK 636
+ GDG+ S + L VP P + ++ + W P N
Sbjct: 4 GSSGRIGDGSPSHPPILERTLDDVPGP-PMGILFPEVRTTSVRLIWQP-PA-APNGIILA 60
Query: 637 YRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
Y+I R + T +VL + Y
Sbjct: 61 YQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLF-------------------- 100
Query: 697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
R+ A G +E + T +
Sbjct: 101 ---------------------RITAQTRKGWGEAAEALVVTTEK 123
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 105 bits (263), Expect = 4e-26
Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 18/194 (9%)
Query: 128 FTVE--PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ---APPNPRRKVGPNRI 182
FTV E +V+ EC E+ + + + + R + ++
Sbjct: 3 FTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQL 62
Query: 183 T-------IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKT 235
I +++ D+G Y C + YK + V V A I +
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID--TRILEVPGTGE 120
Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT---DVAFADSGEYTCFARNK 292
V LTC+ G P EV+W + + G ++T + S ++C N
Sbjct: 121 VQLTCQARGYPLAEVSWQNVSVPAN-TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNA 179
Query: 293 LGTAQGSGSLTVKE 306
S +
Sbjct: 180 HMKELTSAIIDPLS 193
Score = 103 bits (258), Expect = 2e-25
Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 20/175 (11%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPIN-------------PSDRISQGNYGKSLI 90
V L C F + + + +++ G
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA--LFH 70
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS 150
I V+ D G Y C V G + + + A Y ++ + V C+A
Sbjct: 71 IPSVQVRDSGQYRCLVICGAAWDYK-YLTV-KVKASYMRIDTRILEVPGTGEVQLTCQAR 128
Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE-NLRKSDTGNYGCNATNSLG 204
G P E+ W + P + + + R G ++T L+ + N+ C N+
Sbjct: 129 GYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHM 181
Score = 95.9 bits (238), Expect = 1e-22
Identities = 43/198 (21%), Positives = 60/198 (30%), Gaps = 24/198 (12%)
Query: 223 EAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWI-------HNQKELTGGRYTILETG---- 270
APK+ YTVD G +V L C E+ I N L R T+LE
Sbjct: 6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG 65
Query: 271 --DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328
I V DSG+Y C ++ VK EV
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRI-DTRILEVPGTGEVQLT 124
Query: 329 CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL---DSGQYTCRAQT 385
C A P + W S P + +++ + VT L S ++C
Sbjct: 125 CQARGYP--LAEVSWQNVSVPAN----TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWN 178
Query: 386 ELDFIEAQATLTVQVPLE 403
A + +E
Sbjct: 179 AHMKELTSAIIDPLSRME 196
Score = 53.9 bits (129), Expect = 3e-08
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
+V+L C G PL + W VP N S R +G Y + ++ ++ +++C
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVL-RLKPQPSRNFSCMF 176
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEF 134
N + + S + P +EP+
Sbjct: 177 WNAHMKELT-----SAIIDPLSRMEPKV 199
Score = 53.5 bits (128), Expect = 4e-08
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 12/107 (11%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF----------V 359
+T E Y V+ G S + C+ +L +R S +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELE--GIRASLQKVENDTSLQSERATLLEEQL 62
Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ DSGQY C + T+ V+
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID 109
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 101 bits (254), Expect = 5e-26
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD---L 272
P + D+ +G+ V+++ RV G PKP V+W+ N++ + R+ G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
+I D+G YTC A N+ G Q L V+
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 85.0 bits (211), Expect = 4e-20
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----G 178
A P F V + E + V + G P+P + W+ N +P+ P+ RR G
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR---PDQRRFAEEAEGG 60
Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
R+ I + D G Y C A N G + + V
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 73.5 bits (181), Expect = 4e-16
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
D V GQ +P K + WLR +P+ + RF + +
Sbjct: 7 TFKVSLMDQSVREGQDVIMSIRVQGEP--KPVVSWLRNRQPVR-PDQRRFAEEAEGGLCR 63
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
L + + D+G YTC+A E + +A L V+
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 70.8 bits (174), Expect = 4e-15
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQG 100
+ V + G P P W ++ P+ P R L I E D G
Sbjct: 16 SVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAG 75
Query: 101 SYTCEVSNGVGEAKSYSIDLSVLA 124
YTC+ N G + L V
Sbjct: 76 FYTCKAVNEYGARQC-EARLEVRG 98
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 104 bits (260), Expect = 7e-26
Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 23/188 (12%)
Query: 131 EPEFINAAEEETVTFECK--ASGLPEPEIHWVHNGKPI---------SQAPPNPRRKVGP 179
A + + + +I W K+
Sbjct: 5 NALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK 64
Query: 180 NR-ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
N + I++L+ D Y + ++ G + ++ K + + L
Sbjct: 65 NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER----VSKPKISWTCINTTL 120
Query: 239 TCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG 298
TC V PE+N + K L + I S ++ C A NK+
Sbjct: 121 TCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTS-------LSAKFKCTAGNKVSKESS 173
Query: 299 SGSLTVKE 306
++ E
Sbjct: 174 VEPVSCPE 181
Score = 92.3 bits (229), Expect = 9e-22
Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 31/186 (16%)
Query: 44 VALRNKKVELFC--IFGGTPLPQTIWSKDG------------VPINPSDRISQGNYGKSL 89
+ + L + W K D G +L
Sbjct: 10 WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-TL 68
Query: 90 IIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
IKH++ DQ Y + + G+ DL + + + T C+
Sbjct: 69 KIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-----SKPKISWTCINTTLTCE 123
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK 208
+PE++ +GK + + R+ S + + C A N +
Sbjct: 124 VMNGTDPELNLYQDGKHLKLSQ----------RVITHKWTTSLSAKFKCTAGNKVSKESS 173
Query: 209 DVYVNV 214
V+
Sbjct: 174 VEPVSC 179
Score = 89.6 bits (222), Expect = 8e-21
Identities = 24/198 (12%), Positives = 55/198 (27%), Gaps = 35/198 (17%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVF--GAPKPEVNWIHNQKELT-------------GGRY 264
EIT + + G+ + L F ++ W + Y
Sbjct: 2 EITN-ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTY 60
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA-GQ 323
+ + G LKI + D Y + G + I ++ ++
Sbjct: 61 KLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTCI 116
Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
+ T C ++ + + + + + K + S ++ C A
Sbjct: 117 NTTLTCEVMNGT--DPELNLYQDGKHL----------KLSQRVITHKWTTSLSAKFKCTA 164
Query: 384 QTELDFIEAQATLTVQVP 401
++ + + V P
Sbjct: 165 GNKVS--KESSVEPVSCP 180
Score = 53.3 bits (128), Expect = 3e-08
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 10/83 (12%)
Query: 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQ 99
K +++ L C P+ +DG + S R +I S
Sbjct: 107 SKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR---------VITHKWTTSLS 157
Query: 100 GSYTCEVSNGVGEAKSYSIDLSV 122
+ C N V + S +S
Sbjct: 158 AKFKCTAGNKVSKESS-VEPVSC 179
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 100 bits (251), Expect = 1e-25
Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---- 271
AP+I E + + G RV G P PE W N ++ R D
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L I DV DS A N G L V+
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 80.8 bits (200), Expect = 1e-18
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----- 177
+ AP + + F + G P+PE W NG I + R
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE---RSDRIYWYWPED 59
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+ I ++ D+ + A N G ++ V
Sbjct: 60 NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 69.2 bits (170), Expect = 1e-14
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGK-SLIIKHVEFSDQG 100
+ G P P+ W K+GV I SDR L+I+ V D
Sbjct: 16 TVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSA 75
Query: 101 SYTCEVSNGVGEAKS 115
S + N GE S
Sbjct: 76 SIMVKAINIAGETSS 90
Score = 67.7 bits (166), Expect = 4e-14
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSL 366
I ++ + V G A FR V P W + I+ + D L
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKP--DPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ + DS +A + A L VQ
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 100 bits (251), Expect = 2e-25
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD---- 271
AP K +G V TCRV G PKP++ W + K+++ YTI D
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L T D G YT A N G +G L V+
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102
Score = 82.4 bits (204), Expect = 4e-19
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------ 177
AP+F ++ + E VTF C+ +G P+P+I+W +GK IS P
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS---PKSDHYTIQRDLD 63
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLG 204
G + D GNY A N G
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQG 90
Score = 73.2 bits (180), Expect = 8e-16
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
+ + Y++ G TF C +P K I W + + I +S+ +Q + S
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTCRVAGNP--KPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
L T S+ D G YT A I L VQ PS+
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109
Score = 70.1 bits (172), Expect = 8e-15
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGK-SLIIKHVEFSDQ 99
V C G P P+ W KDG I+P I + G SL D
Sbjct: 19 KIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDD 78
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPY 127
G+YT +N G + L V A
Sbjct: 79 GNYTIMAANPQGRISC-TGRLMVQAVNS 105
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 100 bits (250), Expect = 2e-25
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
P P+ V G L C V G P P V W ++L R + G L
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+T D+G Y C ARN G A + ++TV E
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 85.5 bits (212), Expect = 3e-20
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 117 SIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK 176
+ + P F P + +C G P P + W G+ + + R
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL---AASERLS 61
Query: 177 V----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ + + +D G Y C A N+ G Y V VL
Sbjct: 62 FPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 77.0 bits (190), Expect = 3e-17
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ + EL C+ G P P +W K G + S+R L++ +D G
Sbjct: 24 RVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGV 83
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
Y C N GEA + + ++VL P
Sbjct: 84 YVCRARNAAGEAYA-AAAVTVLEPP 107
Score = 75.5 bits (186), Expect = 1e-16
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
P V +G A +C + +P +VW +G + + + R D +
Sbjct: 15 CFLRFPRPVRVVSGAEAELKCVVLGEP--PPVVVWEKGGQQL--AASERLSFPADGAEHG 70
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
L +T + D+G Y CRA+ A A +TV P
Sbjct: 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 100 bits (250), Expect = 2e-25
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 211 YVNVLAH-APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILET 269
+ VL AP IT +++ T G+++ ++C G P P++ W + + L +L+
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61
Query: 270 GD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD 312
G+ L I V D G YTC A + LG A+ ++ T+
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
Score = 90.9 bits (226), Expect = 4e-22
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 118 IDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV 177
+ + AP T E + E++ C ASG P P+I W + + + + +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL---VEDSGIVL 59
Query: 178 GPNRIT--IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
I +RK D G Y C A + LG + + + A E T
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG-AQEKTN 106
Score = 85.5 bits (212), Expect = 3e-20
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
+ +E+ C G P PQ +W KD + I + ++L I+ V D+G YT
Sbjct: 21 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 80
Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYFT 129
C+ + +G AK + A T
Sbjct: 81 CQACSVLGCAKV-EAFFIIEGAQEKT 105
Score = 79.3 bits (196), Expect = 4e-18
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 302 LTVKEHT--HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
LTV E IT E+ G+S C A +P I+W + +E + E +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNP--PPQIMWFKDNETLV-EDSGIVL 59
Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ + +LT+ + + D G YTC+A + L + +A ++ E +
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 104 bits (261), Expect = 3e-25
Identities = 48/236 (20%), Positives = 76/236 (32%), Gaps = 56/236 (23%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVF---GAPKPEVNWIH---------------NQKELT 260
P +T + G++V++ C V V+W+ + +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 261 GGRY---------TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
GR+ T G L + DV AD G YTC R K + + + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV---LP 122
Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIV-WLRGS----------------EPIDFES 354
++P D V G + RC+ S +++ V W+ S F+S
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182
Query: 355 EPRF---------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
RF + ND S+ + E D G YTC L V
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238
Score = 99 bits (248), Expect = 1e-23
Identities = 38/264 (14%), Positives = 71/264 (26%), Gaps = 59/264 (22%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECK---ASGLPEPEIHWVHNGKPISQAP-------- 170
P TV + E+V C + W+ + +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 171 ---PNPRRKVGPNR----------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
P R + + + +++++K+D G Y C + V +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV- 120
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPE---VNWIHNQKELTGGRYTILET----- 269
+ E P+D G T + C + + VNW+ + T +
Sbjct: 121 ---LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 270 -----------------------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
G +K+ V +D G YTC ++ + L V +
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237
Query: 307 HTHITDQPEDYEVEAGQSATFRCN 330
+ GQ N
Sbjct: 238 DEFQRTISPTPPTDKGQQGILNGN 261
Score = 88.4 bits (218), Expect = 2e-19
Identities = 33/248 (13%), Positives = 71/248 (28%), Gaps = 58/248 (23%)
Query: 44 VALRNKKVELFCIF---GGTPLPQTIWSKDGVPINPSDRISQGNYGK------------- 87
+ V + C+ + + W + S+ +
Sbjct: 16 RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHL 75
Query: 88 ---------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAA 138
SL+++ V+ +D+G YTCE+ + + P P +
Sbjct: 76 VGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM-VMKKPVELWVLPEE---PRDLRVR 131
Query: 139 EEETVTFECKASGLPEPE---IHW---------------VHNGKPISQAPPNPRRK---- 176
+T C E ++W + + R +
Sbjct: 132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191
Query: 177 ------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYT 230
I ++ +++SD G Y C+ K + ++V+ + T +P T
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPP-T 250
Query: 231 VDGKTVVL 238
G+ +L
Sbjct: 251 DKGQQGIL 258
Score = 56.0 bits (134), Expect = 9e-09
Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 36/216 (16%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSN------ 362
+T V G+S C + + WL + D F SN
Sbjct: 8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTG 67
Query: 363 ---------------DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
D SL + + D G YTC + + + + + + + V E P +
Sbjct: 68 RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127
Query: 408 FTLIQVIDAKK--AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTT 465
+ + ++ S + W G + E +++ + +
Sbjct: 128 LRVRVGDTTQMRCSIQSTEEKRVTKV----------NWMFSSGSHTEEETVLSYDSNMRS 177
Query: 466 EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
+ + +N RV S + V
Sbjct: 178 GKFQSLGRFRN--RVDLTGDISRNDGSIKLQTVKES 211
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 98.6 bits (246), Expect = 8e-25
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGD--- 271
P +AP D +GK + C+V G P P+++W + K + + +L +
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L I V D+G YTC A N+ G S L V
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
Score = 87.8 bits (218), Expect = 5e-21
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----G 178
P+F P + E + +CK SGLP P++ W +GKP+ P+ K+ G
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV---RPDSAHKMLVRENG 64
Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ + IE + D G Y C ATN G + + V A
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
Score = 75.1 bits (185), Expect = 1e-16
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV--QSNDYSL 366
H P D V+ G+ C P + W +P+ +S + + ++ +SL
Sbjct: 11 HFLQAPGDLTVQEGKLCRMDCKVSGLP--TPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
+ + D+G YTC A L V PS+
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109
Score = 72.4 bits (178), Expect = 1e-15
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQGS 101
K + C G P P W DG P+ P + + N SLII+ V D G
Sbjct: 21 VQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI 80
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
YTC +N G+ S++L V A
Sbjct: 81 YTCIATNRAGQNSF-SLELVVAAKE 104
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 109 bits (272), Expect = 8e-25
Identities = 59/408 (14%), Positives = 115/408 (28%), Gaps = 34/408 (8%)
Query: 356 PRFVQSNDYSLTVTKSSELD---SGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQ 412
P +++ ++ +S E+D SG C + + TL VPL+
Sbjct: 112 PAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELR-FT 170
Query: 413 VIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWT----EKDGEGSIRELIVNKGESTTTEVD 468
+ + + V W+ ++ Y VQ + + V + ++
Sbjct: 171 ELQSGQLEVKWSS--KFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLT 228
Query: 469 KFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG--------TVQSLEAIPLGSSAF 520
P+ RV A N + P + + GS
Sbjct: 229 DIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTV 288
Query: 521 YLKWVKPEQPNGVLMGYKIKY-QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
+ W PE+P+ + YK+ + V + P ++ +D S L L+P Y
Sbjct: 289 TIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYV 348
Query: 580 IHLAGYTKAGDG---AESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFK 636
+ L T G + L + +N E T + + P
Sbjct: 349 VELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEV 408
Query: 637 YRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
F++ + W+++E PT Y ++ + + E
Sbjct: 409 GAPFYQDGQLQ------VKVYWKKTE-----DPTVNRYHVRWFPEACAHNRT-TGSEASS 456
Query: 697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGTK 744
+ + K V + + P K
Sbjct: 457 GMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALK 504
Score = 83.1 bits (204), Expect = 1e-16
Identities = 37/314 (11%), Positives = 79/314 (25%), Gaps = 38/314 (12%)
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPV 426
++ +S + +T I+ Q + P + V W
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427
Query: 427 SPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTT--EVDKFVPASKNFARVLAFN 484
Y V+ + E + G + + + K V
Sbjct: 428 ED----PTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIR 483
Query: 485 GA---------YNGPPSEIISFVTPEGVPGTVQSLEAIP----------------LGSSA 519
+ PP + + + + ++ + +
Sbjct: 484 PKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT 543
Query: 520 FYLKWVKPEQP-NGVLMGYKIKYQSVKGT----KVGPLLERLPYISDPTTTSAKLAGLEP 574
+ W + + G+++ + V + + I + L P
Sbjct: 544 GHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRP 603
Query: 575 STKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPH 634
ST YR+ + T G+G + F P P + R + + PE + P
Sbjct: 604 STLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAH-RSHLKHRHPHHYKPSPE-RYGKPI 661
Query: 635 FKYRIFWRRHNTGE 648
+ TG
Sbjct: 662 PNPLLGLDSTRTGH 675
Score = 81.9 bits (201), Expect = 3e-16
Identities = 62/519 (11%), Positives = 124/519 (23%), Gaps = 78/519 (15%)
Query: 281 DSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLK-- 338
SG C N G K + + + ++ + S++
Sbjct: 134 CSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPV 192
Query: 339 ---LSIVWLRGSEPIDFESEP--RFVQSNDYSLTVTKSSELDSG-QYTCR--AQTEL--- 387
+ W G P + ++ Q+ D + +T + Y R A
Sbjct: 193 IYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTD---IRPSRWYQFRVAAVNVHGTR 249
Query: 388 DFIEAQATLTVQVPLEAPSNFTLIQVIDAKKA-------VVSWNPVSPQSLRGHFRGYKV 440
F AP +++ ++ + W+ P+ YKV
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDL--PEEPDIPVHHYKV 307
Query: 441 QTWTEKDGEGSIRELIVNK-----GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE-- 493
W+ S+ + G + ++K P + A
Sbjct: 308 -FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAK 366
Query: 494 -IISFVTPEGVPGTVQ--------------------------SLEAIPLGSSAFYLKWVK 526
+ F + Q G + W K
Sbjct: 367 VSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKK 426
Query: 527 PEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYT 586
+ + Y +++ L L S KY++ +
Sbjct: 427 T--EDPTVNRYHVRWFPEACAHNRTTGSE-ASSGMTHENYIILQDLSFSCKYKVTVQPIR 483
Query: 587 KAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNT 646
F P ++G+ P + + P F +
Sbjct: 484 PKSHSKAEAVFFTTPP--CSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVN 541
Query: 647 GEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELI----VNKGEST 702
W+ ++ L T +++ + TE +I + +
Sbjct: 542 ITGH-----FSWKMAKANLYQPMT--GFQVTWAEVTTESRQNSLPNSIISQSQILPSDHY 594
Query: 703 TTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
V P++ V GP + +F TPE
Sbjct: 595 VLTVPNLRPSTLYRLEVQVLTPGGEGPATI-KTFRTPEL 632
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 100 bits (251), Expect = 9e-25
Identities = 23/186 (12%), Positives = 54/186 (29%), Gaps = 21/186 (11%)
Query: 131 EPEFINAAEEETVTFECKASGLPE--PEIHWVHNGKPISQA-------PPNPRRKVGPN- 180
+ + A + + + E+ W +++ + ++ N
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
+ I+NL + D+G Y ++ G + +++ K + LTC
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM----VSKPMIYWECSNATLTC 117
Query: 241 RVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG 300
V E+ ++ L R + + C A N++
Sbjct: 118 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTN-------LRAPFKCKAVNRVSQESEME 170
Query: 301 SLTVKE 306
+ E
Sbjct: 171 VVNCPE 176
Score = 87.3 bits (216), Expect = 5e-20
Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 30/182 (16%)
Query: 233 GKTVVLTCRVF--GAPKPEVNWIHNQKELT-----------GGRYTILETGDLKITDVAF 279
G + L F EV W + G + IL GDLKI ++
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKL 339
DSG Y + GT + +L ++ ++ +P +AT C + +
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVS-KPM--IYWECSNATLTCEVLEGT--DV 125
Query: 340 SIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ +G E + + T++ + C+A + + V
Sbjct: 126 ELKLYQGKEHL----------RSLRQKTMSYQWTNLRAPFKCKAVNRVS--QESEMEVVN 173
Query: 400 VP 401
P
Sbjct: 174 CP 175
Score = 77.3 bits (190), Expect = 1e-16
Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 27/171 (15%)
Query: 55 CIFGGTPLPQTIWSKDGVPI----------NPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
+ + W + + S G L IK++ D G+Y
Sbjct: 20 NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-DLKIKNLTRDDSGTYNV 78
Query: 105 EVSNGVGEA-KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
V + G + ++DL V I E T C+ + E+
Sbjct: 79 TVYSTNGTRILNKALDLR----ILEMVSKPMIY-WECSNATLTCEVLEGTDVELKLYQGK 133
Query: 164 KPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+ + + T+ + + C A N + + VN
Sbjct: 134 EHLR----------SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 50.3 bits (120), Expect = 2e-07
Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 17/119 (14%)
Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPI--------DFESEPRFVQSNDYSLTVTKSSE 373
G + W RGS + F F + L + +
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 374 LDSGQYTCRAQTEL--DFIEAQATLTVQVPLEAP------SNFTLI-QVIDAKKAVVSW 423
DSG Y + + L + + P SN TL +V++ +
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKL 129
Score = 46.5 bits (110), Expect = 5e-06
Identities = 6/82 (7%), Positives = 20/82 (24%), Gaps = 10/82 (12%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
K + L C + + + + + + + +
Sbjct: 103 KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSYQWTNLRA 153
Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
+ C+ N V + ++
Sbjct: 154 PFKCKAVNRVSQESE-MEVVNC 174
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 97.8 bits (244), Expect = 1e-24
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD----L 272
P + P++ +G+ + +V G P P+V+W N + + + ++ + L
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
V +D+G Y C A+N+ G A + L V
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 90.5 bits (225), Expect = 5e-22
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----- 177
+ P F PE ++ E + K SGLP P++ W NG+ + + K+
Sbjct: 3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ---SDDLHKMIVSEK 59
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
G + + E +R SD G Y C A N G V ++VLA
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 69.3 bits (170), Expect = 1e-14
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQGS 101
+ + G P P W +G + D I SLI + V SD G+
Sbjct: 17 IDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGA 76
Query: 102 YTCEVSNGVGEAKSYSIDLSVLA 124
Y C N GEA ++ L VLA
Sbjct: 77 YACVAKNRAGEATF-TVQLDVLA 98
Score = 67.3 bits (165), Expect = 5e-14
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 4/94 (4%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSL 366
PE+ ++ G+ P + W + + + + S +SL
Sbjct: 7 RFIQVPENMSIDEGRFCRMDFKVSGLP--APDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
D+G Y C A+ L V
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 103 bits (258), Expect = 1e-24
Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 27/288 (9%)
Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
+ + V + P+ ++ + A V W P ++ + GEG
Sbjct: 6 SGGGGGIPVI-DGPTQIL-VRDVSDTVAFVEWTPPR-----AKVDFILLK-YGLVGGEGG 57
Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLE 511
+ + V P S+ + A G S F T ++L
Sbjct: 58 KTTFRLQ-PPLSQYSVQALRPGSRYEVSISAVRGTNESDASST-QFTTE---IDAPKNLR 112
Query: 512 AIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAG 571
+++ L+W + YK+ Y ++ G E L TT L
Sbjct: 113 VGSRTATSLDLEW---DNSEAEAQEYKVVYSTLAG---EQYHEVLVPKGIGPTTKTTLTD 166
Query: 572 LEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHN 631
L P T+Y + ++ + + +P ++ S+ ++ + WT +
Sbjct: 167 LVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTK-A----S 221
Query: 632 APHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV 679
P YRI + + + + + ++ L + Y I +
Sbjct: 222 GPIDHYRITFTPSSG---ISSEVTVPRDRTSYTLTDLEPGAEYIISIT 266
Score = 94.1 bits (234), Expect = 2e-21
Identities = 46/277 (16%), Positives = 80/277 (28%), Gaps = 39/277 (14%)
Query: 332 VSDPSLKLSIVWLRGSEPIDF------------ESEPRFVQSNDYSLTVTKSSELDSG-Q 378
VSD + W +DF +Q +V L G +
Sbjct: 26 VSDTVAFVE--WTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQ---ALRPGSR 80
Query: 379 YTCRAQTELDFIEAQA-TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRG 437
Y E+ A + ++AP N + A + W+ +
Sbjct: 81 YEVSISAVRGTNESDASSTQFTTEIDAPKNLR-VGSRTATSLDLEWDNSE-----AEAQE 134
Query: 438 YKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF 497
YKV T + + G +T T + VP ++ + A + P+
Sbjct: 135 YKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT---- 190
Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 557
+ + + L ++ L W + +G + Y+I + G
Sbjct: 191 MNARTELDSPRDLMVTASSETSISLIW---TKASGPIDHYRITFTPSSGISS-------E 240
Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
TS L LEP +Y I + ES
Sbjct: 241 VTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
Score = 70.6 bits (173), Expect = 2e-13
Identities = 24/201 (11%), Positives = 57/201 (28%), Gaps = 17/201 (8%)
Query: 491 PSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVG 550
I V + + + +++W P + +KY V G
Sbjct: 2 SPGISGGGGGIPVIDGPTQILVRDVSDTVAFVEW---TPPRAKVDFILLKYGLVGGEG-- 56
Query: 551 PLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEG 610
+ + P + + L P ++Y + ++ + S F P N+
Sbjct: 57 ---GKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRV 113
Query: 611 RGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQD-DVLDWRQSELVLANQP 669
T +L + W A +Y++ + + ++ L +
Sbjct: 114 GSRTATSLDLEWDN-----SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLV 168
Query: 670 TFQPYEIKVVQTWTEKDGEGS 690
Y + + + + S
Sbjct: 169 PGTEYGVGI---SAVMNSKQS 186
Score = 46.0 bits (109), Expect = 2e-05
Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 27/182 (14%)
Query: 327 FRCNAVSDPSLKLS------------IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
R + + SL L +V+ + E T+T +L
Sbjct: 111 LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLT---DL 167
Query: 375 DSG-QYTCRAQTELDFIEAQ-ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLR 432
G +Y ++ ++ AT+ + L++P + + + W S
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTAS-SETSISLIWTKAS----- 221
Query: 433 GHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS 492
G Y++ T+T G S + + T+ + P ++ + A G S
Sbjct: 222 GPIDHYRI-TFTPSSGISSE---VTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
Query: 493 EI 494
+
Sbjct: 278 TV 279
Score = 29.4 bits (66), Expect = 4.1
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
+ GEG + + V P S+ + A G S F T
Sbjct: 48 KYGLVGGEGGKTTFRLQ-PPLSQYSVQALRPGSRYEVSISAVRGTNESDASS-TQFTTEI 105
Query: 741 G 741
Sbjct: 106 D 106
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 100 bits (250), Expect = 2e-24
Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 42/199 (21%)
Query: 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN 198
E+ +V C I W +GK I + ++ + + K G Y C
Sbjct: 17 EDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK------WNLGSNAKDPRGMYQCK 67
Query: 199 ATNSLGYVYKDVYVNVLAHA------------------------PEITEAPKDEYTV--D 232
+ + + Y A E+ + Y V
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGDLKITDVAFA-DSGEYTCF 288
G TV+LTC P E+ W HN K + G + + L + + + SG Y C+
Sbjct: 128 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 185
Query: 289 ARNKLGTAQGSGSLTVKEH 307
R + L ++
Sbjct: 186 PRGSKPEDA-NFYLYLRAR 203
Score = 91.5 bits (226), Expect = 4e-21
Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 42/195 (21%)
Query: 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
V L C W KDG I K + +G Y C+ S
Sbjct: 20 SVLLTC---DAEAKNITWFKDGKMIGFLTEDK-----KKWNLGSNAKDPRGMYQCKGSQN 71
Query: 110 VGEAKSY-----SIDLSVLAAPYFTVEPEFINAAEEE---------------------TV 143
+ S D + A + + TV
Sbjct: 72 KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131
Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK-SDTGNYGCNATNS 202
C P EI W HN K I + + ++++ + +G Y C S
Sbjct: 132 ILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 189
Query: 203 LG-----YVYKDVYV 212
Y+Y V
Sbjct: 190 KPEDANFYLYLRARV 204
Score = 78.0 bits (191), Expect = 2e-16
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 38/180 (21%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
+V+LTC A + W + K + + + A G Y C
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGFLT---EDKKKWNLGSNAKDPRGMYQCKGSQN 71
Query: 293 LGTA------QGSGSLTVKEHTHITDQPED--------------------YEVE-AGQSA 325
GS K+ D +D Y+V +G +
Sbjct: 72 KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL-DSGQYTCRAQ 384
C I+W + I + + + + S++ L++ + SEL SG Y C +
Sbjct: 132 ILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Score = 64.1 bits (155), Expect = 8e-12
Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 21 ATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR- 79
+ + +V++ V L C P + +W + I +
Sbjct: 101 DDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD 158
Query: 80 -ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
+ + + E G Y C E ++ + L
Sbjct: 159 KNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202
Score = 39.1 bits (90), Expect = 0.002
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 12/124 (9%)
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS 376
Y+ + S C+ + I W + + I F + + + +++
Sbjct: 13 YDYQEDGSVLLTCD-AEAKN----ITWFKDGKMIGFLT------EDKKKWNLGSNAKDPR 61
Query: 377 GQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR 436
G Y C+ Q + +A + A + + +
Sbjct: 62 GMYQCKGSQNKSK-PLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT 120
Query: 437 GYKV 440
YKV
Sbjct: 121 PYKV 124
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 100 bits (251), Expect = 2e-24
Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 22/198 (11%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI------SQAPPNPRRKVGP-- 179
T+E AE+ V L W P + G
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 180 -NRIT--------IENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEY 229
R + + D G Y + T+ + V +V + +
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121
Query: 230 TVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGD-LKITDVAFADSGEYTC 287
+ +V LTC + W+ N + L R T+ + L+I + D+GEY C
Sbjct: 122 VKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 288 FARNKLGTAQ-GSGSLTV 304
N + + S L +
Sbjct: 181 EISNPVSVRRSNSIKLDI 198
Score = 99.7 bits (248), Expect = 5e-24
Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 28/190 (14%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINP-------------------SDRISQGNYGKSL 89
V L L W K S R + G SL
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-SL 73
Query: 90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV-LAAPYFTVEPEFINAAEEETVTFECK 148
+ + + D G YT ++++ ++ V ++ E ++VT C
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATNSLGYV 206
++ I W+ N + + R + N + I+ +++ D G Y C +N +
Sbjct: 134 SND-IGANIQWLFNSQSL---QLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR 189
Query: 207 YKD-VYVNVL 215
+ + ++++
Sbjct: 190 RSNSIKLDII 199
Score = 99.0 bits (246), Expect = 1e-23
Identities = 34/205 (16%), Positives = 55/205 (26%), Gaps = 27/205 (13%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG------------------ 261
E+T + V+L W
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 262 --GRYTILETGDLKITDVAFADSGEYTCFARNKLG-TAQGSGSLTVKEH-THITDQPEDY 317
GR I G L + D G YT ++ Q + V + T Q +
Sbjct: 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT 120
Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG 377
V+ S T C + +I WL S+ + Q+N L + D+G
Sbjct: 121 TVKELDSVTLTCLSNDIG---ANIQWLFNSQSLQLTERMTLSQNNS-ILRIDPIKREDAG 176
Query: 378 QYTCRAQTELDFIEAQ-ATLTVQVP 401
+Y C + + L +
Sbjct: 177 EYQCEISNPVSVRRSNSIKLDIIFD 201
Score = 85.5 bits (211), Expect = 4e-19
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI 90
Q ++ V L C+ W + + ++R++ L
Sbjct: 108 QPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILR 166
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
I ++ D G Y CE+SN V +S SI L ++ P+
Sbjct: 167 IDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH 205
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 106 bits (264), Expect = 5e-24
Identities = 48/318 (15%), Positives = 85/318 (26%), Gaps = 30/318 (9%)
Query: 295 TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR-GSEPIDFE 353
+ SL T + G+ C + + + + G E ++
Sbjct: 221 AGSDAPSLATVAGTCV---DHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDA 277
Query: 354 SEPRFVQSNDYSLTVTKSSEL-------DSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ + + + E G +C + +
Sbjct: 278 CQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAP 337
Query: 407 NFTLIQVIDAKKAVVSWNPVSPQSLRGHF-RGYKVQ-------TWTEKDGEGSIRELIVN 458
++ L V K + W P PQ G Y V + E S+R
Sbjct: 338 HY-LTAVGMGAKVELRWTP--PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPP 394
Query: 459 KGESTTT-EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGS 517
G + T+ V P V A NG S + + +
Sbjct: 395 HGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRST 454
Query: 518 SAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK 577
++ + W P + Y++ Y+ + S L L P T
Sbjct: 455 TSLSVSWSIPPPQQSRVWKYEVTYRKKGD-------SNSYNVRRTEGFSVTLDDLAPDTT 507
Query: 578 YRIHLAGYTKAGDGAESK 595
Y + + T+ G GA SK
Sbjct: 508 YLVQVQALTQEGQGAGSK 525
Score = 75.2 bits (184), Expect = 2e-14
Identities = 42/265 (15%), Positives = 77/265 (29%), Gaps = 59/265 (22%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQ----- 542
+ + + P L A+ +G+ L+W P+ G + Y + +
Sbjct: 319 FRAPQDPASMPCTRPPSAPHYLTAVGMGAKVE-LRWTPPQDSGGREDIVYSVTCEQCWPE 377
Query: 543 SVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPF 602
S + + T TS ++ LEP Y + S+
Sbjct: 378 SGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASV 437
Query: 603 KN----PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDW 658
P V G + +L +SW+ P + +KY + +R+ ++N
Sbjct: 438 SINQTEPPKVRLEGRSTTSLSVSWSI-PP-PQQSRVWKYEVTYRKKGDSNSYN------- 488
Query: 659 RQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 718
V + E + +D P + +
Sbjct: 489 -------------------------------------VRRTEGFSVTLDDLAPDTTYLVQ 511
Query: 719 VLAFNGAYNGPPSEIISFVT--PEG 741
V A G S++ F T PEG
Sbjct: 512 VQALTQEGQGAGSKVHEFQTLSPEG 536
Score = 52.1 bits (124), Expect = 4e-07
Identities = 55/310 (17%), Positives = 86/310 (27%), Gaps = 35/310 (11%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLT--CRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK 273
A P E P+ VDG+ +V C + +
Sbjct: 239 AVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLEC 298
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA-GQSATFRCNAV 332
+ G +C A + T P G R
Sbjct: 299 PEHTLPSPEGATSCECEEGFFRAPQDPASMP--CTRPPSAPHYLTAVGMGAKVELRWTPP 356
Query: 333 SDP--------SLKLSIVWLRGSEPIDFESEPRFVQ----SNDYSLTVTKSSELDSG-QY 379
D S+ W E E+ R+ + S+TV+ L+ Y
Sbjct: 357 QDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSD---LEPHMNY 413
Query: 380 TCR--AQT---ELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH 434
T A+ L + T +V + P L VSW+ P +
Sbjct: 414 TFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGR-STTSLSVSWSI--PPPQQSR 470
Query: 435 FRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 494
Y+V + +K S V + E + +D P + +V A G S++
Sbjct: 471 VWKYEVT-YRKKGDSNSYN---VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKV 526
Query: 495 ISFVT--PEG 502
F T PEG
Sbjct: 527 HEFQTLSPEG 536
Score = 36.3 bits (83), Expect = 0.042
Identities = 35/255 (13%), Positives = 52/255 (20%), Gaps = 39/255 (15%)
Query: 490 PPSEIISFVTPEG--VPGTVQSLE-AIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKG 546
S+ S T G V V P A +W+ P GY+ + +
Sbjct: 221 AGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQA 280
Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD 606
G L E +T + D A P P
Sbjct: 281 CSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASM--PCTRPPSAPH 338
Query: 607 NVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLA 666
+ + + WT P+ Y + + R SE
Sbjct: 339 YLTAV-GMGAKVELRWTP-PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE---- 392
Query: 667 NQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAY 726
+ T+ V P V A NG
Sbjct: 393 ----------------------------PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVS 424
Query: 727 NGPPSEIISFVTPEG 741
S +
Sbjct: 425 GLVTSRSFRTASVSI 439
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 94.4 bits (235), Expect = 1e-23
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 117 SIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK 176
S S L VEPE A TVT C+ P P+IHW+ +G P+ P
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------ 55
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
+ + + D G Y C AT+S + V++ P
Sbjct: 56 --SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 84.8 bits (210), Expect = 4e-20
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
++ P+ G TV LTC V P P+++W+ + G + + L + ++
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD-----GVPLPLPPSPVLILPEI 64
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTV 304
D G Y+C A + Q S ++++
Sbjct: 65 GPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 74.0 bits (182), Expect = 3e-16
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 298 GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPR 357
GS + E + +PE V G + T C + P I W++ P+
Sbjct: 1 GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQP--SPQIHWMKDGVPLP------ 52
Query: 358 FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
L + + D G Y+C A + +++ +
Sbjct: 53 --LPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 63.6 bits (155), Expect = 9e-13
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
V L C P PQ W KDGVP+ LI+ + DQG+Y+C ++
Sbjct: 28 VTLTCEVPAQPSPQIHWMKDGVPLPLPP-------SPVLILPEIGPQDQGTYSCVATHSS 80
Query: 111 GEAK-SYSIDLSVLA 124
+ S ++ +S++
Sbjct: 81 HGPQESRAVSISIIE 95
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 95.1 bits (237), Expect = 2e-23
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
S + +PG +L A ++ + W P NG + YK+ Y K
Sbjct: 3 SGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDK 62
Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF 598
D ++ S + GL+ T+Y + Y K G G + +
Sbjct: 63 E--------QDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVA 104
Score = 46.6 bits (111), Expect = 2e-06
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 394 ATLTVQVPLEAPSNFTLIQVID--AKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
+ Q ++ P ++ V+W P S G + YK+ + EK +
Sbjct: 7 GRVETQPEVQLPGPAPNLRAYAASPTSITVTWET--PVSGNGEIQNYKLY-YMEKGTD-- 61
Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+E V+ S + ++ ++ RV+A+N G + ++ T
Sbjct: 62 -KEQDVD-VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
Score = 33.5 bits (77), Expect = 0.060
Identities = 15/136 (11%), Positives = 35/136 (25%), Gaps = 47/136 (34%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
N+ ++P ++ ++W + N Y++++ T + DV
Sbjct: 21 APNLRAYAASPTSITVTWE--TPVSGNGEIQNYKLYYMEKGTDK-EQDVDV---SSHSYT 74
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
+ + Y RV+A+N
Sbjct: 75 INGLKKYTEYSF-----------------------------------------RVVAYNK 93
Query: 725 AYNGPPSEIISFVTPE 740
G + ++ T
Sbjct: 94 HGPGVSTPDVAVRTLS 109
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 94.3 bits (235), Expect = 3e-23
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
P+I + P+D+ G++V L +V G W+ +K++ + + + L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
I G YT NKLG+ Q +LTV +
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
Score = 83.9 bits (208), Expect = 1e-19
Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GP 179
+ P PE E+V K +G W+ K I + KV
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ---ESEHMKVENSENG 62
Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--APEIT-EAPK 226
+++TI R+ G Y N LG V + V+ P T P
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPSGPS 112
Score = 80.8 bits (200), Expect = 2e-18
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ VELF GT W K I S+ + G L I G
Sbjct: 18 KVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGC 77
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
YT V N +G ++ ++L+V+ P
Sbjct: 78 YTLLVENKLGSRQA-QVNLTVVDKP 101
Score = 73.5 bits (181), Expect = 6e-16
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLT 367
I PED +V AG+S ++ W++ + I + S + LT
Sbjct: 9 QIIQFPEDQKVRAGESVELFGKVTGTQ--PITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ + + G YT + +L +AQ LTV + P+
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 94.0 bits (234), Expect = 5e-23
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 489 GPPSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
S + T E P + + ++A L S+ ++W +PE+PNG + GY++ Y
Sbjct: 3 SGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQ 62
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
V ++ + + L P Y + + +T GDG S
Sbjct: 63 HVNNWMKHNV----ADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLS 105
Score = 68.2 bits (167), Expect = 6e-14
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
Q P AP + +++ + +V W P+ G +GY+V + + + N
Sbjct: 16 QAPSSAPRDVQ-ARMLSSTTILVQWKE--PEEPNGQIQGYRVYYTMDPTQHVN-NWMKHN 71
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+S T + VP +VLAF +GP S I +T G
Sbjct: 72 VADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
Y + +T + + N +S T + VP +VLAF +GP S
Sbjct: 52 YRVY----YTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
Query: 734 ISFVTPEG 741
I +T G
Sbjct: 108 IQVITQTG 115
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 92.4 bits (230), Expect = 7e-23
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELT-GGRYTILETGD---L 272
++ +G V C++ + +V W ++L +Y I L
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
+ D+ D G Y C N G L VK
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 69.7 bits (171), Expect = 7e-15
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSL 366
++ Q E G + C + + W G + E+ ++ + + L
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQ-STQVTWYFGVRQL--ENSEKYEITYEDGVAIL 60
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
V ++LD G Y C+ + + A L V+
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 68.5 bits (168), Expect = 2e-14
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKV----GP 179
+ + E V + CK + ++ W + + + + ++ G
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE---NSEKYEITYEDGV 57
Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+ ++++ K D G Y C N G + V
Sbjct: 58 AILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 67.3 bits (165), Expect = 5e-14
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 44 VALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQG 100
V V+ C + W + S++ I+ + L +K + D G
Sbjct: 12 VGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDG 71
Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
+Y C+V N GE S +L V
Sbjct: 72 TYRCKVVNDYGEDSS-YAELFV 92
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 93.2 bits (232), Expect = 1e-22
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 11/133 (8%)
Query: 489 GPPSEIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVK 545
S I T + P Q + + +GS+ + WV P + NGV+ Y + Y++V
Sbjct: 3 SGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVD 62
Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY-----V 600
G + +S L GLE T+YR+ + +T G G ES + V
Sbjct: 63 GE---DRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDV 119
Query: 601 PFKNPDNVEGRGS 613
P P VE S
Sbjct: 120 PSGPPRKVESGPS 132
Score = 79.3 bits (196), Expect = 8e-18
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 2/117 (1%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
P P + + VSW P S G Y V + +
Sbjct: 17 TPSAPPQKVMC-VSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGIS 75
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT-VQSLEAIPL 515
E ++ ++ ++ V A GP S + T E VP + +E+ P
Sbjct: 76 REHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPS 132
Score = 43.5 bits (103), Expect = 3e-05
Identities = 18/158 (11%), Positives = 34/158 (21%), Gaps = 45/158 (28%)
Query: 589 GDGAESKYLF-----YVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRR 643
G S + P P V + +SW P N +Y + +
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 644 HNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTT 703
+ + + E ++
Sbjct: 61 VDGEDRGR----------------------------------------HVVDGISREHSS 80
Query: 704 TEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
++ ++ V A GP S + T E
Sbjct: 81 WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 91.6 bits (228), Expect = 1e-22
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
P+I A + G T L GAP P W + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
ADSG Y +N+LG + + V+
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 80.8 bits (200), Expect = 9e-19
Identities = 20/94 (21%), Positives = 26/94 (27%), Gaps = 7/94 (7%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPN 180
P I T E G P+P W P V
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA---ALAPELLVDAKSSTT 58
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
I + +++D+GNY N LG V V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 74.7 bits (184), Expect = 1e-16
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEV 106
L F G P P W+ + + + S+ + +D G+Y +V
Sbjct: 18 FTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKV 77
Query: 107 SNGVGEAKSYSIDLSV 122
N +GE ++ ++ V
Sbjct: 78 KNELGEDEA-IFEVIV 92
Score = 68.1 bits (167), Expect = 3e-14
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF---VQSNDYSL 366
I +++AG + + + P + W G P +S+ S+
Sbjct: 5 ILTASRKIKIKAGFTHNLEVDFIGAP--DPTATWTVGDSGA--ALAPELLVDAKSSTTSI 60
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ DSG Y + + EL EA + VQ
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 92.5 bits (230), Expect = 2e-22
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
+P+ AP N + V+++ A V W+PV +S+RGH +GY++ W + R I K
Sbjct: 13 LPMVAPGNVR-VNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71
Query: 460 -----GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
G T + P S V NG GP S F TPEG
Sbjct: 72 ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP 122
Score = 77.1 bits (190), Expect = 4e-17
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 492 SEIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSV--KG 546
S S + E +P ++ + S+ + W V + G L GY+I Y
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
+ +E+ + T L GLEP + Y +++ G+G S
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP 110
Score = 58.6 bits (142), Expect = 1e-10
Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 35/142 (24%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
+P P NV + W +P YRI++ + + N+ +
Sbjct: 13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHI---- 68
Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
++++ +G T + P S V
Sbjct: 69 -------------------------------EKKILTFQGSKTHGMLPGLEPFSHYTLNV 97
Query: 720 LAFNGAYNGPPSEIISFVTPEG 741
NG GP S F TPEG
Sbjct: 98 RVVNGKGEGPASPDRVFNTPEG 119
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 92.0 bits (229), Expect = 2e-22
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 480 VLAFNGAYNGPPSEIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMG 536
+ N G ++ I+ VT VP Q++ + S + + W+ P NG + G
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITG 63
Query: 537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
YKI+++ +P GLE ++Y ++ T G G S
Sbjct: 64 YKIRHRKTTRRGE-------METLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS 114
Score = 73.9 bits (182), Expect = 6e-16
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
VP P N + ++V++++ VSW P + G GYK++ E+ +
Sbjct: 27 VPSAPPQNVS-LEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHR----KTTRRGEMETLE 81
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
+ S+ +V A GPPS + TPE
Sbjct: 82 PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
Score = 48.9 bits (117), Expect = 3e-07
Identities = 25/163 (15%), Positives = 40/163 (24%), Gaps = 49/163 (30%)
Query: 583 AGYTKAGDGAESKYLF-----YVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKY 637
+ + G G + + VP P NV ++ +SW P N Y
Sbjct: 5 SSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGY 64
Query: 638 RIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVN 697
+I R+ E+
Sbjct: 65 KIRHRKTTRRG--------------------------------------------EMETL 80
Query: 698 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
+ + S+ +V A GPPS + TPE
Sbjct: 81 EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
Score = 28.1 bits (63), Expect = 4.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 719 VLAFNGAYNGPPSEIISFVTPEG 741
+ N G ++ I+ VT
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSD 26
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 91.6 bits (227), Expect = 4e-22
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 193 GNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW 252
G+ + +S G V + +H +AP + G +V L C G+P PE+ W
Sbjct: 2 GSSHHHHHHSSGLVPRG------SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQW 55
Query: 253 IHNQKELT-----------------GGRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
+ Y + I + D+G Y C A N
Sbjct: 56 WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDR 115
Query: 296 AQGSGSLTVK 305
+ + VK
Sbjct: 116 NHLTRAPRVK 125
Score = 82.8 bits (204), Expect = 7e-19
Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 20/119 (16%)
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHW 159
GS + G + F P +V C+A G P PEI W
Sbjct: 2 GSSHHHHHHSSG------LVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQW 55
Query: 160 VHNGKPISQAPPNPRRKVGPNRI--------------TIENLRKSDTGNYGCNATNSLG 204
G+ + +R+ +I+ L + DTG Y C A+N
Sbjct: 56 WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
Score = 65.0 bits (158), Expect = 1e-12
Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 22/144 (15%)
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
G + G + P + G S C AV P I
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMAG-----FVQAPLSQQRWVGGSVELHCEAVGSP--VPEIQ 54
Query: 343 WLRGSEPIDFES--------------EPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD 388
W + + + Q ++++ E D+G Y CRA + D
Sbjct: 55 WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
Query: 389 FIEAQATLTVQVPLEAPSNFTLIQ 412
V+ + A + +++
Sbjct: 115 RNHLTRAPRVKW-VRAQAVVLVLE 137
Score = 55.8 bits (134), Expect = 1e-09
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 16/94 (17%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS---------------DRISQGNYGKS 88
VEL C G+P+P+ W +G N + +
Sbjct: 32 QRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAST 91
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
+ I + D G+Y C SN + V
Sbjct: 92 ISIDTLVEEDTGTYECRASNDPDRN-HLTRAPRV 124
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 97.6 bits (242), Expect = 1e-21
Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 17/281 (6%)
Query: 301 SLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ 360
++ + P+D + G TF C + +++ I + E ++
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLS--ALIGHTNCPLIHLDGENVAIK 249
Query: 361 SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAV 420
+ S S + + P + P + D K+ +
Sbjct: 250 IRNIS---------VSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLN-CETHDLKEII 299
Query: 421 VSWNPVSPQSLRGHFR-GYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 479
SWNP +L G Y + + ++ ES
Sbjct: 300 CSWNPGRVTALVGPRATSYTLV-ESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFT 358
Query: 480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKI 539
+ A N + +++ +T + P T S + + S+A L W P + +I
Sbjct: 359 LNAHNPLGRSQSTILVN-ITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEI 417
Query: 540 KYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
+ + + + ++ L L P T Y
Sbjct: 418 EIKKSNSVQ--EQRNVTIQGVENSSYLVALDKLNPYTLYTF 456
Score = 62.2 bits (150), Expect = 3e-10
Identities = 37/290 (12%), Positives = 75/290 (25%), Gaps = 24/290 (8%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
P+D+ + G + C + N + L+ ++ I + S
Sbjct: 205 PQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIH------LDGENVAIKIRNISVSAS 258
Query: 285 YTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVSDPSLKLS-- 340
+ D P+ E C N +L
Sbjct: 259 SGTNVVFTTEDNIFGTVIFAGY---PPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRA 315
Query: 341 ---IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA--QAT 395
+ S + Y L + +T A L ++
Sbjct: 316 TSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVN 375
Query: 396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
+T +V P++F + I++ +SW+ P + +++ +
Sbjct: 376 ITEKVYPHTPTSFKVK-DINSTAVKLSWHL--PGNFAKINFLCEIEIKKSNSVQEQRNVT 432
Query: 456 IVN-KGESTTTEVDKFVPASKNFARVLA--FNGAYNGPPSEIISFVTPEG 502
I + S +DK P + R+ S +T E
Sbjct: 433 IQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTTEA 482
Score = 57.2 bits (137), Expect = 1e-08
Identities = 28/252 (11%), Positives = 55/252 (21%), Gaps = 49/252 (19%)
Query: 496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
+ + P T Q L W P + ++ Y V+ + +
Sbjct: 274 TVIFAGYPPDTPQQLNCETHDLKEIICSW-NPGRVTALVGPRATSYTLVESFSGKYVRLK 332
Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF----YVPFKNPDNVEGR 611
+ L Y L + G +S L V P + + +
Sbjct: 333 RAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRS-QSTILVNITEKVYPHTPTSFKVK 391
Query: 612 GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSE--LVLANQP 669
+ +SW +F I ++ N+ + + S + L
Sbjct: 392 DINSTAVKLSWHLPGNFAKI--NFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLN 449
Query: 670 TFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGP 729
+ Y ++ R
Sbjct: 450 PYTLYTFRI---------------------------------------RCSTETFWKWSK 470
Query: 730 PSEIISFVTPEG 741
S +T E
Sbjct: 471 WSNKKQHLTTEA 482
Score = 54.1 bits (129), Expect = 1e-07
Identities = 41/351 (11%), Positives = 89/351 (25%), Gaps = 41/351 (11%)
Query: 351 DFESEPRFVQSNDYSLTVTKSSELDSGQYTCR--AQTELDFIEAQATLTVQ----VPLEA 404
+ E R T K L G Y + + ++ TL Q +P +
Sbjct: 29 EVCIEQRSRSCYQLEKTSIKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIP-DT 87
Query: 405 PSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGEST- 463
P L + WN ++++ K+ ++ + +
Sbjct: 88 PEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIK-VLRKESMELVKLVTHQTTLNGK 146
Query: 464 ------TTEVDKFVPASKNFARVLAFNGAYNGP-PSEIISFVTPEGVPGTVQSLEA---- 512
+ D + + +F + + + E + + + S
Sbjct: 147 DTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQ 206
Query: 513 ---IPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKL 569
I +GS V E+ L+G+ D + K+
Sbjct: 207 DKVILVGSD-ITFCCVSQEKVLSALIGHT---------------NCPLIHLDGENVAIKI 250
Query: 570 AGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIE 629
+ S ++ T+ + Y P P + ++ SW
Sbjct: 251 RNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDT-PQQLNCETHDLKEIICSWNPGRVTA 309
Query: 630 HNAPHF-KYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV 679
P Y + + + +L+ P + Y +
Sbjct: 310 LVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLN 360
Score = 35.6 bits (81), Expect = 0.066
Identities = 39/283 (13%), Positives = 79/283 (27%), Gaps = 41/283 (14%)
Query: 115 SYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR 174
S +S + V P+ +TF C + + N I +
Sbjct: 188 SPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIH---LDGE 244
Query: 175 RKVGPNRITIENLRKSDTGN---YGCNATNSLGYVYKDVYV-----NVLAHAPEIT---- 222
I I N+ S + N G V Y + ++
Sbjct: 245 NVA----IKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIIC 300
Query: 223 --EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA 280
+ V + + + + + + + T Y +L +
Sbjct: 301 SWNPGRVTALVGPRAT--SYTLVESFSGKYVRLKRAEAPTNESYQLL------FQMLPNQ 352
Query: 281 DSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
+ +T A N LG +Q + + + E P ++V+ ++ ++KLS
Sbjct: 353 EIYNFTLNAHNPLGRSQSTILVNITEKV-YPHTPTSFKVK----------DINSTAVKLS 401
Query: 341 IVWLRGSEPIDFESEPRFVQSNDYS-LTVTKSSELDSGQYTCR 382
I+F E +SN +++ Y
Sbjct: 402 WHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVA 444
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 89.4 bits (222), Expect = 2e-21
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 214 VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD- 271
V I E +D +G + CR+ A V+W ++ L I
Sbjct: 9 VQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGG 68
Query: 272 ---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L + +A DSG A G + S +L V E
Sbjct: 69 YHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTE 102
Score = 75.9 bits (187), Expect = 8e-17
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 296 AQGSGSLTVKEHT-HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES 354
S V+ HI + ED +V+ G SATFRC + W P+
Sbjct: 1 GSSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPAN--YEPVHWFLDKTPLHANE 58
Query: 355 EPRFVQSND--YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
+ LT+ + + DSG A A A L V E PS F+
Sbjct: 59 LNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGD----QRASAALRVT---EKPSVFS 108
Score = 73.6 bits (181), Expect = 6e-16
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 120 LSVLA-APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV- 177
V + + E ++ E + TF C+ S +HW + P+ N ++
Sbjct: 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH---ANELNEID 63
Query: 178 ----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAP 225
G + +T+ L D+G A G + V + +
Sbjct: 64 AQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111
Score = 66.6 bits (163), Expect = 2e-13
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGS 101
C W D P++ ++ +Q L ++ + D G+
Sbjct: 25 VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT 84
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
E + A L V P
Sbjct: 85 IYFEAGDQRASAA-----LRVTEKP 104
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 88.9 bits (221), Expect = 2e-21
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
S I +T GVPG + +A P ++ L W P + + Y++ Y+ + +
Sbjct: 3 SGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGEHGE 60
Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
I+ TS +L GL+P++ Y LA + G GA +
Sbjct: 61 E-------QRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 100
Score = 47.3 bits (113), Expect = 9e-07
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 12/114 (10%)
Query: 394 ATLTVQVPLEAPS---NFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
+ V P NF ++SW P P+S Y++ + GE
Sbjct: 7 GDIQVITQTGVPGQPLNFKAE-PESETSILLSWTP--PRS--DTIANYELVYKDGEHGE- 60
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
E + T+ + P S + R+ A + G + IS T +
Sbjct: 61 ---EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
Score = 31.5 bits (72), Expect = 0.31
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
YE+ + + + E + T+ + P S + R+ A + G +
Sbjct: 49 YELV----YKDGEHG---EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAE 101
Query: 734 ISFVTPEGG 742
IS T +
Sbjct: 102 ISARTMQSS 110
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 88.6 bits (220), Expect = 3e-21
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAP--KDEYTVD-GKTVVLTCRVFGAPKPEVNWIHN 255
++ S G + + V + +A P+I + Y G+ + L G P+P+V W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 256 QKELTGGRYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L R + + + A +DSGEY + + + + V E
Sbjct: 62 GAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVE 115
Score = 78.6 bits (194), Expect = 1e-17
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 3/99 (3%)
Query: 121 SVLAAPYFTVEPEF---INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV 177
+ P + E + G P P++ W G P+ + + R
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSD 76
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
+ +SD+G Y + + + V+
Sbjct: 77 FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVE 115
Score = 77.8 bits (192), Expect = 2e-17
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSD 98
R+ + +++ L F G P PQ +W+K G P++ S + ++ ++ SD
Sbjct: 31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSD 90
Query: 99 QGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
G Y V + + +I + V+
Sbjct: 91 SGEYELSVQIENMKD-TATIRIRVVEKA 117
Score = 57.8 bits (140), Expect = 2e-10
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
+ Y + G+ P + +VW +G P+D D V +++
Sbjct: 31 RQTYIRKVGEQLNLVVPFQGKP--RPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAAR 88
Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVP 401
DSG+Y Q E A + V
Sbjct: 89 SDSGEYELSVQIENMKDTATIRIRVVEK 116
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 92.0 bits (228), Expect = 3e-21
Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 35/202 (17%)
Query: 44 VALRNKKVELFCIFGGTPLPQT-----IWSKDGVPIN----------------------P 76
V + + C F W + I
Sbjct: 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 77 SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
D++S GN +L I V+ D G Y C +S G A I + V A + +
Sbjct: 72 KDQLSLGNA--ALQITDVKLQDAGVYRCMISYG--GADYKRITVKVNAPYNKINQRILVV 127
Query: 137 AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI----TIENLRKSDT 192
C+A G P+ E+ W + + ++ + + +
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTN 187
Query: 193 GNYGCNATNSLGYVYKDVYVNV 214
+ C + +
Sbjct: 188 EIFYCTFRRLDPEENHTAELVI 209
Score = 85.1 bits (210), Expect = 7e-19
Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 41/216 (18%)
Query: 128 FTVE--PEFINAAEEETVTFECKASG-----LPEPEIHWVHNGKPI-----------SQA 169
FTV + +T ECK L ++W K I Q
Sbjct: 2 FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61
Query: 170 PP-NPRRKVGPNRIT-------IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
R ++ ++++ I +++ D G Y C + G YK + V V A +I
Sbjct: 62 SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKI 120
Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD---------- 271
+ LTC+ G PK EV W + ++ G+ T +
Sbjct: 121 NQ-RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTST 179
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
L+I + + C R + L + E
Sbjct: 180 LRINT---TTNEIFYCTFRRLDPEENHTAELVIPEL 212
Score = 82.4 bits (203), Expect = 7e-18
Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 35/211 (16%)
Query: 223 EAPKDEYTVD-GKTVVLTCRVFGAPKPE-----VNWIH---------NQKELTG------ 261
PKD Y V+ G + + C+ + + V W + +E
Sbjct: 5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSY 64
Query: 262 -GRYTILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
R +L+ L+ITDV D+G Y C G ++ V + +Q
Sbjct: 65 RQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQR 123
Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLR-GSEPIDFESEPRFVQSNDYSLTVTKS-- 371
C A P K ++W + + ++ + + VT +
Sbjct: 124 ILVVDPVTSEHELTCQAEGYP--KAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR 181
Query: 372 -SELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ + + C + A L +
Sbjct: 182 INTTTNEIFYCTFRRLDPEENHTAELVIPEL 212
Score = 50.0 bits (119), Expect = 6e-07
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 8/109 (7%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD------RISQGN 84
+AP + R V + EL C G P + IW+ + + +
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173
Query: 85 YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
+ + ++ + + + C E + +L + P E
Sbjct: 174 FNVTSTLR-INTTTNEIFYCTFRRLDPEENH-TAELVIPELPLAHPPNE 220
Score = 45.8 bits (108), Expect = 2e-05
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 23/126 (18%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLS---IVWLRGSEPI-------------DFE 353
+T + Y VE G + T C + L L+ + W + I
Sbjct: 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63
Query: 354 SEPR------FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
R + + +L +T D+G Y C + T+ V P +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQ 122
Query: 408 FTLIQV 413
L+
Sbjct: 123 RILVVD 128
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 87.1 bits (216), Expect = 7e-21
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
++ VE E + + C+ I+W+ +G + + R ++ +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQL---AESNRTRITGEEVE 57
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNV---LAHAP 219
+++ +D+G Y C ++ G VNV L P
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGP 96
Score = 85.9 bits (213), Expect = 1e-20
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
+ + G + L CR+ +NW+ + +L T + ++++ D
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDS 61
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKE 306
ADSG Y C + G+ S+ V +
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSVNVSD 90
Score = 72.8 bits (179), Expect = 7e-16
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
+ ++L C W +DGV + S+R G+ + ++ +D G Y
Sbjct: 14 LVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT--GEEVEVQDSVPADSGLYA 70
Query: 104 CEVSNGVGEAKSYSIDLSVLAAP 126
C S+ G + ++V A
Sbjct: 71 CVTSSPSGSD-TTYFSVNVSDAL 92
Score = 72.0 bits (177), Expect = 1e-15
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
+ E + V G RC D SI WLR + R + + + V
Sbjct: 6 SGVEVESFLVHPGDLLQLRCRLRDDV---QSINWLRDGVQL--AESNRTRITGE-EVEVQ 59
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPSN 407
S DSG Y C + ++ V PS+
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 87.1 bits (216), Expect = 1e-20
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 484 NGAYNGPPSEIISFVTPEG------VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGY 537
+ +GP ++ +S T E VP SL PL +S + W PE N V+ GY
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSI-VVSWTPPENQNIVVRGY 60
Query: 538 KIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
I Y D + L+PS+ Y I L + G+G
Sbjct: 61 AIGYGIGSP-------HAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL 110
Score = 43.2 bits (102), Expect = 3e-05
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
++ L E PS+ + ++ + VVSW P P++ RGY + +
Sbjct: 18 FESDLDETRVPEVPSSLHVRPLVTS--IVVSWTP--PENQNIVVRGYAIG-YGIGSPHAQ 72
Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP-SEIISFVTPEGVPGT 506
++ + ++ P+S + AFN G P E P +
Sbjct: 73 TIKV---DYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125
Score = 27.8 bits (62), Expect = 5.6
Identities = 26/166 (15%), Positives = 43/166 (25%), Gaps = 55/166 (33%)
Query: 586 TKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNL---------VISWTAMPEIEHNAPHFK 636
+ G + +L F++ + P++L V+SWT PE N
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTP-PE-NQNIVVRG 59
Query: 637 YRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
Y I + + Q +D++Q + N Y I
Sbjct: 60 YAIGYGIGSPHA---QTIKVDYKQRYYTIENLDPSSHYVI-------------------- 96
Query: 697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGG 742
+ AFN G P + P
Sbjct: 97 ---------------------TLKAFNNVGEGIPLYESAVTRPHTS 121
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 85.5 bits (212), Expect = 2e-20
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
+ VEP T+ +C A G P P W N P++
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------YM 53
Query: 184 IENLRKSDTGNYGCNATNSLGYVY-KDVYVNV 214
+ + G Y C+ N K V + +
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 80.8 bits (200), Expect = 8e-19
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT 275
+I P + + G T+VL C G+P P W N+ LT +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVP 55
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTV 304
V G Y C N + +
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
Score = 68.5 bits (168), Expect = 2e-14
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 10/95 (10%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
I +P ++ G + +C AV P W + P+ V
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSP--IPHYQWFKNELPLT--------HETKKLYMV 54
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
G Y C + D +++ + L
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 68.1 bits (167), Expect = 2e-14
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
+ L C+ G+P+P W K+ +P+ + K ++ +V+ QG+Y C V N
Sbjct: 21 LVLQCVAVGSPIPHYQWFKNELPLTHETK-------KLYMVPYVDLEHQGTYWCHVYNDR 73
Query: 111 GEAKSYSIDLSV 122
S +++ +
Sbjct: 74 DSQDSKKVEIII 85
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 87.0 bits (216), Expect = 2e-20
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 489 GPPSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVK 545
S ++ T VP Q+L S + + W P NG + GYKI+Y+
Sbjct: 3 SGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR--- 59
Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
K + + T S + GL+ T+Y +A T G G +
Sbjct: 60 --KASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPAT 106
Score = 80.1 bits (198), Expect = 4e-18
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
VP AP N +L +V ++K ++ W P +P + G GYK++ L+
Sbjct: 17 VPSAAPQNLSL-EVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV--S 73
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEA 512
G + ++ ++ RV A GP ++ +S T E + E
Sbjct: 74 GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEV 126
Score = 49.3 bits (118), Expect = 3e-07
Identities = 22/158 (13%), Positives = 40/158 (25%), Gaps = 47/158 (29%)
Query: 589 GDGAESKYLF-----YVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRR 643
G S + VP P N+ +++I W N Y+I +R+
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 644 HNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTT 703
+ + V G +
Sbjct: 61 ASRKSDVTETLV------------------------------------------SGTQLS 78
Query: 704 TEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
++ ++ RV A GP ++ +S T E
Sbjct: 79 QLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFES 116
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 86.0 bits (213), Expect = 2e-20
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILET-------- 269
AP IT + V G PKP + W +N L +Y +
Sbjct: 4 APTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 270 -GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI 310
G L++ + ++G+YT A+N+ G + S I
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 83.6 bits (207), Expect = 1e-19
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
V AP T + + G P+P + W +NG ++++ + N
Sbjct: 1 VHFAPTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 182 ------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
+ ++N + G+Y A N G K + + + P I
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM-GWPGI 102
Score = 68.2 bits (167), Expect = 3e-14
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI-------SQGNYGKSLIIK 92
E + + G P P W +G +N S I + Y L +
Sbjct: 8 TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLD 67
Query: 93 HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
+ + G YT N G+ I + P
Sbjct: 68 NPTHMNNGDYTLIAKNEYGKD-EKQISAHFMGWP 100
Score = 54.7 bits (132), Expect = 1e-09
Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 8/90 (8%)
Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID------FESEPRFVQSNDYSLTVTKS 371
+ +P K ++ W ++ + L +
Sbjct: 12 SPTSDHHWCIPFTVKGNP--KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNP 69
Query: 372 SELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ +++G YT A+ E E Q +
Sbjct: 70 THMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 89.1 bits (221), Expect = 2e-20
Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 15/218 (6%)
Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEGSI 452
A L +PS + A V ++ P++ G YK + W E
Sbjct: 1 APLAQADTPSSPSI--DQVEPYSSTAQVQFDE--PEATGGVPILKYKAE-WRAVGEEVWH 55
Query: 453 RELIVNKGESTTT--EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPGTVQS 509
+ K S + P + R+ A NG G S F T P P +
Sbjct: 56 SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKL 115
Query: 510 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKL 569
+ ++ + +K + + Y ++Y+++ + + L
Sbjct: 116 EGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSE------WKPEIRLPSGSDHVML 169
Query: 570 AGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDN 607
L+ + +Y +++ + G + ++F + +
Sbjct: 170 KSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHHH 207
Score = 29.4 bits (66), Expect = 3.1
Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 682 WTEKDGEGSIRELIVNKGESTTT--EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 739
W E + K S + P + R+ A NG G S F T
Sbjct: 46 WRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 105
Query: 740 E 740
Sbjct: 106 P 106
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 89.1 bits (221), Expect = 2e-20
Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 18/201 (8%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
+ + P++ + I + W P++ GY++
Sbjct: 12 SGLVPRGSHMEVPQPTDLS-FVDITDSSIGLRWTPLNS----STIIGYRIT-VVAAGEGI 65
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSL 510
I E V+ V P V P+ +T + L
Sbjct: 66 PIFEDFVD-SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT----LTQQTAVPPPTDL 120
Query: 511 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 570
+G + W P P+ L + ++Y VK + L P+ + L
Sbjct: 121 RFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSI-----SPSDNAVVLT 173
Query: 571 GLEPSTKYRIHLAGYTKAGDG 591
L P T+Y + ++ + +
Sbjct: 174 NLLPGTEYVVSVSSVYEQHES 194
Score = 76.8 bits (189), Expect = 4e-16
Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 13/192 (6%)
Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
+ S ++ + VP L + + S+ L+W + ++GY+I +
Sbjct: 8 HHHSSGLVPRGSHMEVPQ-PTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEG 64
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDN 607
D + + GLEP Y I + G+ + P +
Sbjct: 65 I-----PIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119
Query: 608 VEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLAN 667
+ P+ + ++W P + + + + E + + + +VL N
Sbjct: 120 LRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVK-NEEDVAELSISPSDNAVVLTN 174
Query: 668 QPTFQPYEIKVV 679
Y + V
Sbjct: 175 LLPGTEYVVSVS 186
Score = 43.7 bits (103), Expect = 7e-05
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 12/140 (8%)
Query: 357 RFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTLIQVI 414
FV S+ TVT L+ G Y T + E TLT Q + P++ I
Sbjct: 70 DFVDSSVGYYTVT---GLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLR-FTNI 125
Query: 415 DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS 474
V+W P P S + V ++ E + EL ++ + +P +
Sbjct: 126 GPDTMRVTWAP--PPS--IDLTNFLV-RYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGT 179
Query: 475 KNFARVLAFNGAYNGPPSEI 494
+ V + + P
Sbjct: 180 EYVVSVSSVYEQHESTPLRG 199
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 85.5 bits (212), Expect = 3e-20
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
A TE + + T V TC+ P V W EL G++ + G L
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT 66
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
I+ + ADS YTC G AQ L V+
Sbjct: 67 ISALEKADSDTYTCDI----GQAQSRAQLLVQG 95
Score = 66.6 bits (163), Expect = 1e-13
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
T++ + +VE +A F C P ++ W +G + + + S +
Sbjct: 10 CFTEELTNLQVEEKGTAVFTC-KTEHP--AATVTWRKGLLEL--RASGKHQPSQEGLTLR 64
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
LT++ + DS YTC +++A L VQ PS
Sbjct: 65 LTISALEKADSDTYTCDIGQA----QSRAQLLVQGRRSGPS 101
Score = 65.8 bits (161), Expect = 2e-13
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
A FT E + E+ T F CK P + W + + + +
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELR---ASGKHQPSQEGLT 62
Query: 181 -RITIENLRKSDTGNYGCNATNS 202
R+TI L K+D+ Y C+ +
Sbjct: 63 LRLTISALEKADSDTYTCDIGQA 85
Score = 59.7 bits (145), Expect = 3e-11
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSY 102
C P W K + + S + G L I +E +D +Y
Sbjct: 20 VEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTY 78
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAP 126
TC++ A+ L V
Sbjct: 79 TCDIGQAQSRAQ-----LLVQGRR 97
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 85.5 bits (212), Expect = 3e-20
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ + P V + G ++ L W +PEQPNG+++ Y+IKY +
Sbjct: 6 SGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE------MQSYS 59
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
TT A ++GL+P T+Y + T AG G S
Sbjct: 60 TLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFS 95
Score = 46.6 bits (111), Expect = 1e-06
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ Q + + W P+ G Y+++ + EKD E +
Sbjct: 6 SGQAAPSQVVVIRQERA-GQTSVSLLWQE--PEQPNGIILEYEIK-YYEKDKEMQSYSTL 61
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
K +T V P ++ +V A A G S+ + T +
Sbjct: 62 --KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104
Score = 35.0 bits (81), Expect = 0.014
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
YEIK + EKD E + K +T V P ++ +V A A G S+
Sbjct: 44 YEIK----YYEKDKEMQSYSTL--KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQA 97
Query: 734 ISFVTPE 740
+ T +
Sbjct: 98 MEVETGK 104
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 85.5 bits (212), Expect = 3e-20
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
+S + V A + TE ++E +G T VL C + + V W + L
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLR 59
Query: 261 -GGRYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
G R+++ + G L+I + D+GEY C G + S LTV+
Sbjct: 60 DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA 105
Score = 75.9 bits (187), Expect = 8e-17
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 294 GTAQGSGSLTVKEH-THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
+ + S LTV+ T+ + E G +A RC + W +G E +
Sbjct: 5 SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA----PVEWWKGHETL-- 58
Query: 353 ESEPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
R D L + D+G+Y C E A LTV+ PS
Sbjct: 59 RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE----RTSAMLTVRAMPSGPS 111
Score = 66.6 bits (163), Expect = 1e-13
Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 108 NGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI 166
+ ++ S L+V A P FT A E T C+ S + W + +
Sbjct: 2 SSGSSGRT-SAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETL 58
Query: 167 SQAPPNPR---RKVGPNRI-TIENLRKSDTGNYGCNATNS 202
R R+ G I L D G Y C
Sbjct: 59 ---RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE 95
Score = 59.3 bits (144), Expect = 5e-11
Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 9/85 (10%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
A L C + W K + DR S G L I+ + D G
Sbjct: 30 EATEGATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGE 87
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
Y C A L+V A P
Sbjct: 88 YLCMCGKERTSAM-----LTVRAMP 107
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 85.6 bits (212), Expect = 3e-20
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
+ S + + VP SL P + + W P PN V+ GY I Y
Sbjct: 2 SSGSSGPENDLDESQVPDQPSSLHVRPQTNCI-IMSWTPPLNPNIVVRGYIIGYGVGSP- 59
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
D + LE S+ Y I L + AG+G
Sbjct: 60 ------YAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL 100
Score = 39.0 bits (91), Expect = 8e-04
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
QVP + PS+ + + ++SW P P + RGY + + E +
Sbjct: 16 QVP-DQPSSLHVRPQTNC--IIMSWTP--PLNPNIVVRGYIIG-YGVGSPY---AETVRV 66
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPP-SEIISFVTPEGVPGT 506
+ +++ +S + AFN A G P E + + P +
Sbjct: 67 DSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPSS 115
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 91.5 bits (226), Expect = 4e-20
Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 20/296 (6%)
Query: 302 LTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS 361
L + G S T C V +P ++ W+ S P
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGV-EPEDNATVHWVLRKPAAG--SHPSRWAG 57
Query: 362 NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV 421
L + DSG Y+C L V VP E + + V
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRAGRP---AGTVHLLVDVPPE-EPQLSCFRKSPLSNVVC 113
Query: 422 SWNPVSPQSLRGHFR-GYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 480
W P S SL + + + + + + +S +
Sbjct: 114 EWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSM 173
Query: 481 LAFNGAYNGPPSEIISFVTPEGV---PGTVQSLEAIPLGSSAFYLKWVKPE--QPNGVLM 535
+ + S+ +F + P ++ A+ + W P + +
Sbjct: 174 CVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRL 232
Query: 536 GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
++++Y++ + ++ + ++ + L + G G
Sbjct: 233 RFELRYRAERSK------TFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQG 282
Score = 82.6 bits (203), Expect = 3e-17
Identities = 47/305 (15%), Positives = 92/305 (30%), Gaps = 26/305 (8%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKELTGGRYTILETG-DLKIT 275
P A ++ G +V LTC V+W+ + G L +
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVS 333
V DSG Y+C+ + G+ L V ++P+ + C S
Sbjct: 66 SVQLHDSGNYSCYRAGRP---AGTVHLLVDVP---PEEPQLSCFRKSPLSNVVCEWGPRS 119
Query: 334 DPSLKLSIVWL----RGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT--CRAQTEL 387
PSL V L + S DF+ ++ Q + E DS Y + +
Sbjct: 120 TPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSV 179
Query: 388 DFIEAQA---TLTVQVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTW 443
++ + + P+N T+ V + + V+W + + ++++
Sbjct: 180 GSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYR 239
Query: 444 TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVTP 500
E+ + + + ++ ++ A G SE
Sbjct: 240 AERSKTFTTWMVKDL---QHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPW 296
Query: 501 EGVPG 505
Sbjct: 297 TESRS 301
Score = 58.3 bits (140), Expect = 3e-09
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 10/123 (8%)
Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVG 178
L+ P V + + ++VT C +HWV R
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAG--SHPSRWAGM 58
Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
R+ + +++ D+GNY C V++L P E P+ +
Sbjct: 59 GRRLLLRSVQLHDSGNYSCYRAGRPAG-----TVHLLVDVPP--EEPQLSCFRKSPLSNV 111
Query: 239 TCR 241
C
Sbjct: 112 VCE 114
Score = 54.9 bits (131), Expect = 4e-08
Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKS 88
R P Q V R +L V L C T+ W G G+
Sbjct: 4 RRCP-AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM-GRR 61
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
L+++ V+ D G+Y+C + + ++ L V P EP+ + C+
Sbjct: 62 LLLRSVQLHDSGNYSCYRAGRP----AGTVHLLVDVPPE---EPQLSCFRKSPLSNVVCE 114
Query: 149 ASGLPEP 155
P
Sbjct: 115 WGPRSTP 121
Score = 50.2 bits (119), Expect = 1e-06
Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 10/190 (5%)
Query: 496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
+ + P Q S +W P + + + + + E
Sbjct: 87 VHLLVDVPPEEPQLSCFRKSPLSNVVCEW-GPRSTPSLTTKAVLLVRKFQNSPAEDFQEP 145
Query: 556 LPYISDPTTTSAKLAG-LEPSTKYRIHLAGYTKAGDGAESKYLFY----VPFKNPDN--V 608
Y + S +LA S+ Y + + + G F + P N V
Sbjct: 146 CQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITV 205
Query: 609 EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQ 668
P L ++W + ++ + +R + + V D Q V+ +
Sbjct: 206 TAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKT-FTTWMVKD-LQHHCVIHDA 263
Query: 669 PTFQPYEIKV 678
+ + +++
Sbjct: 264 WSGLRHVVQL 273
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 84.6 bits (210), Expect = 5e-20
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ PG V++L+A+ ++ + W P NG + GY++ V K
Sbjct: 3 SGSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGK--------EQ 54
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
+ S KL GL+ T+Y + Y + G G +
Sbjct: 55 NIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTD 91
Score = 50.3 bits (121), Expect = 5e-08
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR 453
+ P N +++W P P G +GY++ TE
Sbjct: 1 GSSGSSGP-GPVENLQ-AVSTSPTSILITWEP--PAYANGPVQGYRLF-CTEVSTG---- 51
Query: 454 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+ + + + +++ ++ R LA+N G ++ I+ VT
Sbjct: 52 KEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102
Score = 34.9 bits (81), Expect = 0.014
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 47/136 (34%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
+N++ ++P +++I+W P N P YR+F +TG+
Sbjct: 11 VENLQAVSTSPTSILITWE--PPAYANGPVQGYRLFCTEVSTGK---------------- 52
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
+ +G + +++ ++ R LA+N
Sbjct: 53 -----------------EQNIEVDG------------LSYKLEGLKKFTEYSLRFLAYNR 83
Query: 725 AYNGPPSEIISFVTPE 740
G ++ I+ VT
Sbjct: 84 YGPGVSTDDITVVTLS 99
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 87.0 bits (216), Expect = 8e-20
Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 16/199 (8%)
Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEGSIRELI 456
+ P P + ++ + ++W+P P G + Y V+ E + +
Sbjct: 3 MDTP-GPPQDLK-VKEVTKTSVTLTWDP--PLLDGGSKIKNYIVE-KRESTRKAYST--V 55
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
T+ +VD+ + RVLA N G P+E V P + + +
Sbjct: 56 ATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVT 115
Query: 517 SSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
++ L W KPE G ++GY ++ Q+ K + T A + GL
Sbjct: 116 RNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWAT-------CATVKVTEATITGLIQG 168
Query: 576 TKYRIHLAGYTKAGDGAES 594
+Y ++ + G
Sbjct: 169 EEYSFRVSAQNEKGISDPR 187
Score = 75.8 bits (187), Expect = 6e-16
Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 15/181 (8%)
Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 561
PG Q L+ + ++ L W P G + Y ++ + + ++
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTV------ATN 58
Query: 562 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKN----PDNVEGRGSTPNN 617
TS K+ L+ Y + + G G ++ V P + T N+
Sbjct: 59 CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNS 118
Query: 618 LVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIK 677
+ +SW PE + + Y + + + + W + +E + + Y +
Sbjct: 119 VSLSWEK-PEHDGGSRILGYIVEMQTKGSDK-WAT--CATVKVTEATITGLIQGEEYSFR 174
Query: 678 V 678
V
Sbjct: 175 V 175
Score = 42.7 bits (101), Expect = 1e-04
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 9/123 (7%)
Query: 382 RAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRG-HFRGY 438
A+ E T E P I ++D + +SW P+ G GY
Sbjct: 80 LAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEK--PEHDGGSRILGY 137
Query: 439 KVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV 498
V E +GS + + T + + + RV A N P ++ V
Sbjct: 138 IV----EMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPV 193
Query: 499 TPE 501
+
Sbjct: 194 IAK 196
Score = 33.5 bits (77), Expect = 0.17
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 44/137 (32%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P +++ + T ++ ++W P ++ + Y + R
Sbjct: 9 PQDLKVKEVTKTSVTLTWDP-PLLDGGSKIKNYIVEKRESTRK----------------- 50
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
++ + T+ +VD+ + RVLA N
Sbjct: 51 ----------------AYST----------VATNCHKTSWKVDQLQEGCSYYFRVLAENE 84
Query: 725 AYNGPPSEIISFVTPEG 741
G P+E V
Sbjct: 85 YGIGLPAETAESVKASE 101
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 84.5 bits (209), Expect = 9e-20
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP--PNPRRKVGP 179
P P + ++ E T CKA G P P I W G+ + P R + P
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 180 N------RITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLA 216
+ RI + D G Y C A N LG D + V A
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 79.1 bits (195), Expect = 7e-18
Identities = 29/108 (26%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL------TGGRYTILETGD 271
P I E P D G+ L C+ G P P + W + + +L +G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 272 LKITDVAFA-----DSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQ 313
L + D G Y C ARN LG A SL V H
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116
Score = 76.0 bits (187), Expect = 8e-17
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF--- 96
+ + + L C G P P W K G + + + SL +
Sbjct: 20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 97 --SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV 130
D+G Y C N +GEA S+ L V AA +
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 63.3 bits (154), Expect = 2e-12
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 300 GSLTVKEHT-HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP-- 356
GSL ++ I + P D V G+ AT C A P +I W +G E ++ + +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRP--TPTIEWYKGGERVETDKDDPR 58
Query: 357 -RFVQSNDYSLTV-----TKSSELDSGQYTCRAQTEL-DFIEAQATLTVQVP 401
+ SL + S D G Y C A+ L + + A+L V
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 83.6 bits (207), Expect = 1e-19
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD--- 271
+ T+ K + +G T L C + + V W + L GGRY++ + G
Sbjct: 6 SGPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCE 63
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH-THITDQPED 316
L+I D++ AD+GEY+C G + S +LTV+ T+
Sbjct: 64 LQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGP 105
Score = 67.8 bits (166), Expect = 4e-14
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 13/109 (11%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---GPN 180
FT + + A+E T T +C+ S + W + + R + G
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETL---RDGGRYSLKQDGTR 61
Query: 181 RI-TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDE 228
I +L +D G Y C + V A TE
Sbjct: 62 CELQIHDLSVADAGEYSCMCGQERT----SATLTVRALPARFTEGSGPS 106
Score = 64.7 bits (158), Expect = 7e-13
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
T + E G +AT +C + W +G E + R+ D
Sbjct: 10 RFTQDLKTKEASEGATATLQCELSKVA----PVEWKKGPETL--RDGGRYSLKQDGTRCE 63
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
L + S D+G+Y+C E ATLTV+ P+ FT
Sbjct: 64 LQIHDLSVADAGEYSCMCGQE----RTSATLTVRAL---PARFT 100
Score = 60.5 bits (147), Expect = 2e-11
Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
A L C + + W K + R S G L I + +D G
Sbjct: 19 EASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGE 76
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
Y+C A L+V A P E
Sbjct: 77 YSCMCGQERTSAT-----LTVRALPARFTEG 102
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 83.6 bits (207), Expect = 2e-19
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
P EAP+ ++V+ + + V W V Y+++ W D E + + V
Sbjct: 16 DAPSEAPTEVG-VKVLSSSEISVHWEHVLE----KIVESYQIRYWAAHDKEEAANRVQV- 69
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+ + ++ +P ++ F V A N A GPPS++I T +
Sbjct: 70 TSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
Score = 81.2 bits (201), Expect = 1e-18
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 489 GPPSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
S + + + P + L SS + W ++ Y+I+Y +
Sbjct: 3 SGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV--LEKIVESYQIRYWAAHDK 60
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ ++ SA+L L P T+Y I + AG G S
Sbjct: 61 EEAANRVQVT----SQEYSARLENLLPDTQYFIEVGACNSAGCGPPS 103
Score = 52.7 bits (127), Expect = 1e-08
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 679 VQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
++ W D E + + V + + ++ +P ++ F V A N A GPPS++I T
Sbjct: 52 IRYWAAHDKEEAANRVQV-TSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110
Query: 739 PEG 741
+
Sbjct: 111 KKA 113
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 82.5 bits (204), Expect = 2e-19
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
VE E + + + C+ I+W+ +G + + R ++ + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQL---VESNRTRITGEEVEVR 65
Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+ +D+G Y C ++ G VNV
Sbjct: 66 DSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 80.6 bits (199), Expect = 1e-18
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA 278
+ + G + L CR+ +NW+ + +L T + ++++ D
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
ADSG Y C + G+ S+ V
Sbjct: 69 PADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 68.3 bits (167), Expect = 2e-14
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
+ ++L C W +DGV + S+R G+ + ++ +D G Y
Sbjct: 20 LVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--GEEVEVRDSIPADSGLYA 76
Query: 104 CEVSNGVGEAKSYSIDLSV 122
C S+ G + ++V
Sbjct: 77 CVTSSPSGSD-TTYFSVNV 94
Score = 64.8 bits (158), Expect = 4e-13
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
+ + E V G RC D SI WLR + R + + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV---QSINWLRDGVQL--VESNRTRITGEE-VE 63
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
V S DSG Y C + ++ V
Sbjct: 64 VRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 83.3 bits (206), Expect = 2e-19
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 12/114 (10%)
Query: 210 VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILET 269
V + V P + + E ++ + V G P P ++W+HN + L + +E
Sbjct: 1 VALTVYY-PPRVVSLEEPELRLEHC---IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56
Query: 270 --------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
G L ++G YT A+N LGTA + + + D+
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVS 110
Score = 82.6 bits (204), Expect = 4e-19
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 118 IDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP-----PN 172
+ L+V P E G P P +HW+HNG+P+ ++
Sbjct: 1 VALTVYYPPRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 173 PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL-AHAPEITEAPKDEYTV 231
++ + + GNY A N LG + + + L P +P TV
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117
Score = 69.8 bits (171), Expect = 1e-14
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK------SLIIKHVEFSDQGSYTCEVSN 108
+ G P P W +G P+ S I Y + L+ + G+YT N
Sbjct: 27 FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKN 86
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPE 133
+G A +I+ L P+ E
Sbjct: 87 PLGTANQ-TINGHFLKEPFPVDEVS 110
Score = 48.7 bits (116), Expect = 3e-07
Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 10/105 (9%)
Query: 302 LTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS 361
LTV + E E +P ++ WL +P+
Sbjct: 3 LTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNP--PPTLHWLHNGQPLRESKIIHVEYY 57
Query: 362 NDY-----SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ L K + ++G YT A+ L
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 82.0 bits (203), Expect = 3e-19
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
++ P+ G V +V W +++ +Y + G L +
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+V AD G Y A G+++ L V E
Sbjct: 68 REVGPADQGSYAVIA----GSSKVKFDLKVIE 95
Score = 63.1 bits (154), Expect = 2e-12
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GP 179
F+ +P + A FE + ++ W G IS + + +
Sbjct: 7 PVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDIS---ASNKYGLATEGTR 62
Query: 180 NRITIENLRKSDTGNYGCNATNS 202
+ +T+ + +D G+Y A +S
Sbjct: 63 HTLTVREVGPADQGSYAVIAGSS 85
Score = 62.7 bits (153), Expect = 2e-12
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN 362
K + + +P EV AG A F +K + W RG I + ++ +
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAE-TERAGVK--VRWQRGGSDI--SASNKYGLAT 58
Query: 363 D---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ ++LTV + D G Y A + + + L V
Sbjct: 59 EGTRHTLTVREVGPADQGSYAVIAGSS----KVKFDLKVI 94
Score = 61.2 bits (149), Expect = 8e-12
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 32 APKQQYVTRKKEV-ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--S 88
P + + + V + W + G I+ S++ G +
Sbjct: 6 KPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAK 114
L ++ V +DQGSY + +
Sbjct: 65 LTVREVGPADQGSYAVIAGSSKVKFD 90
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 82.0 bits (203), Expect = 4e-19
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 218 APEITEAPKDEYTV-DGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD--- 271
+ + + Y V G + LT + EV W+ N +E+ G +Y G
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L I+ + AD Y C G + S L VKE
Sbjct: 74 LTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104
Score = 68.6 bits (168), Expect = 2e-14
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 301 SLTVKEHTHITDQPED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
S+ K+ T + E Y+V G ++D + + WL+ + I S +++
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAE--VKWLKNGQEIQ-MSGSKYI 64
Query: 360 QSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ +LT+++ S D Y C E + L V+
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGE----KCSTELFVK 103
Score = 63.9 bits (156), Expect = 1e-12
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 116 YSIDLSVLAAPYFTVE-PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR 174
+ + + F + ++ + + + + E+ W+ NG+ I +
Sbjct: 6 HHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYI 64
Query: 175 -RKVGPNRI-TIENLRKSDTGNYGCNATNS 202
+G R TI +D Y C
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGE 94
Score = 58.9 bits (143), Expect = 6e-11
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTC 104
K+ L + W K+G I S ++L I +D +Y C
Sbjct: 31 GHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89
Query: 105 EVSNGVGEAK 114
V +
Sbjct: 90 VVGGEKCSTE 99
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 82.6 bits (204), Expect = 4e-19
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKEL--- 259
G + V + P I + + ++ + G+ + C + P P+ + W + L
Sbjct: 1 GSSGSSGTLTV--NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58
Query: 260 TGGRYTILET-------GDLKITDVAFAD-SGEYTCFARNKLGTAQGSGSLTVK 305
T GRYT+ L I+++ AD Y C A N G+ L +
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 71.8 bits (176), Expect = 3e-15
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 115 SYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPP-- 171
S L+V P + + +A E +C P P+ I W +
Sbjct: 4 GSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 62
Query: 172 -----NPRRKVGPNRITIENLRKSDTG-NYGCNATNSLGYVYKDVYVNV 214
+ + +TI N+ ++D Y C A NS G + + +
Sbjct: 63 YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 64.9 bits (158), Expect = 8e-13
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 294 GTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
G++ SG+LTV I+ + G+ +C S P I W ++
Sbjct: 1 GSSGSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPP-DRIAWSWKENVLESG 58
Query: 354 SEPRFVQSNDY-------SLTVTKSSELD-SGQYTCRAQTELDFIEAQATLTVQ 399
+ R+ +LT++ D Y C A L Q
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 60.3 bits (146), Expect = 3e-11
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 18/106 (16%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDR--------IS 81
+ + Q+ +K ++ C TP P I WS + +
Sbjct: 18 SSTQTQHALH-------GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70
Query: 82 QGNYGKSLIIKHVEFSD-QGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
+ +L I ++ +D Q Y C N G + I L +
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSE 115
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 89.4 bits (222), Expect = 5e-19
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLK 273
P I E P D +G L CR V+WI + R +L G L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH 309
T+V D+G YTC N +G S +L V H
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436
Score = 80.2 bits (198), Expect = 6e-16
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPN-RIT 183
P P +N E +C+AS + W+ NG ++ R V + +
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
N+ DTG Y C +NS+G +NV
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436
Score = 62.8 bits (153), Expect = 1e-10
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR--GSEPIDFESEPRFVQSND 363
I + P D V G +A +C A + + S+ W+ G+ + R +D
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTSLT---SVSWITPNGTVMTHGAYKVRIAVLSD 396
Query: 364 YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
+L T + D+G YTC + A ATL V
Sbjct: 397 GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 57.1 bits (138), Expect = 1e-08
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSK-DGVPINP---SDRISQGNYGKSLIIKHVEFSDQG 100
EL C L W +G + RI+ + G +L +V D G
Sbjct: 353 VTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG-TLNFTNVTVQDTG 410
Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAP 126
YTC VSN VG + S L+V
Sbjct: 411 MYTCMVSNSVGNT-TASATLNVTGTH 435
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 82.0 bits (203), Expect = 5e-19
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
I + +D++ G+ V L C + A P V+W+ ++K + +Y ++ G L I
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ D+GEYTC TA L V+E
Sbjct: 68 RGASLKDAGEYTCEVEASKSTAS----LHVEE 95
Score = 66.9 bits (164), Expect = 9e-14
Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
+ VEL C P W KD I S + + L+I+ D G
Sbjct: 19 WVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGE 77
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
YTCEV A L V
Sbjct: 78 YTCEVEASKSTAS-----LHVEEKA 97
Score = 66.2 bits (162), Expect = 2e-13
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLT 367
I ED V G+ RC + + WL+ + I + V L
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCELSRAGT---PVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ +S D+G+YTC + ++ A+L V+ PS
Sbjct: 67 IRGASLKDAGEYTCEVEAS----KSTASLHVEEKASGPS 101
Score = 64.2 bits (157), Expect = 8e-13
Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPN 180
E A E V C+ S P +HW+ + K I + + G
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIR---KSQKYDVVCEGTM 62
Query: 181 RI-TIENLRKSDTGNYGCNATNSLG 204
+ I D G Y C S
Sbjct: 63 AMLVIRGASLKDAGEYTCEVEASKS 87
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 82.7 bits (204), Expect = 5e-19
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 16/114 (14%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAP---KPEVNWIHNQK----ELTGGRYTILETG 270
E P+ G+ + +V KP + W + G + ET
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 271 D---------LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
+ ++I +G Y C K S L V E T T +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120
Score = 68.5 bits (167), Expect = 5e-14
Identities = 20/119 (16%), Positives = 32/119 (26%), Gaps = 16/119 (13%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPR------ 174
+ F +P+ E +TF K +P I W +
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 175 ----RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEAPK 226
+V + I + + GNY C T + + V P I P
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPS 124
Score = 68.1 bits (166), Expect = 7e-14
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKL-SIVWLRGSEPIDFESEPRFVQSND------ 363
++P+ V+ G+ TF ++ L+ +I W +G + +Q +
Sbjct: 11 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 70
Query: 364 ----YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNF 408
+ + + K+ + +G Y C + F L V N
Sbjct: 71 RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119
Score = 53.8 bits (129), Expect = 5e-09
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 22/115 (19%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPL---PQTIWSKDG-----------VPINPSD 78
P+ V +++ L P W K + + +
Sbjct: 14 PQGGTVKVGEDITFI-------AKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 79 RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
Y + I + + G+Y CEV+ S S DL V + T +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLEVHESTGTTPNID 120
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 81.6 bits (202), Expect = 6e-19
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD--- 271
+ EA KD ++G L C + P V W + L G +Y++ + G
Sbjct: 6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L + ++ DSG Y+C G S +LTV
Sbjct: 65 LVVRNLRPQDSGRYSCSF----GDQTTSATLTVTA 95
Score = 66.2 bits (162), Expect = 1e-13
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
+ +D EV G +AT RC S + + W G+ + ++ +
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVAA---PVKWCYGNNVL--RPGDKYSLRQEGAMLE 64
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
L V DSG+Y+C + ATLTV PS
Sbjct: 65 LVVRNLRPQDSGRYSCSFGDQ----TTSATLTVTALPSGPS 101
Score = 62.7 bits (153), Expect = 3e-12
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GP 179
F + + E T C S + P + W + + P + +
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVL---RPGDKYSLRQEGAM 62
Query: 180 NRITIENLRKSDTGNYGCNATNS 202
+ + NLR D+G Y C+ +
Sbjct: 63 LELVVRNLRPQDSGRYSCSFGDQ 85
Score = 62.3 bits (152), Expect = 4e-12
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSY 102
L L C+ P W + P D+ S G L+++++ D G Y
Sbjct: 20 VLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRY 78
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAP 126
+C + A L+V A P
Sbjct: 79 SCSFGDQTTSAT-----LTVTALP 97
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 81.6 bits (201), Expect = 6e-19
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAP---KPEVNWIHNQK----ELTGGRYTILETGD--- 271
P+D G ++ + RV GA P V W + G + ++ D
Sbjct: 8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67
Query: 272 ------LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L ITD A +G Y C K + +LTV E
Sbjct: 68 KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 67.7 bits (165), Expect = 6e-14
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKL-SIVWLRGSEPIDF----------ESEPRFVQS 361
+P+D EV G S TF LK + W +G +S R +
Sbjct: 10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69
Query: 362 NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ L +T + +G Y C T+ F + LTV
Sbjct: 70 YLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 60.8 bits (147), Expect = 2e-11
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPRR------ 175
F + P+ ++TF + +G P + W GK + + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDS 62
Query: 176 -----KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
KV + I + + + TG+Y C + + + + V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 52.3 bits (125), Expect = 1e-08
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 22/104 (21%)
Query: 33 PKQQYVTRKKEVALRNKKVELFCIFGGTPL---PQTIWSKDG-----------VPINPSD 78
P+ VT + G L P W K + ++ S
Sbjct: 11 PQDGEVTVGGSITFS-------ARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 79 RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
+ Y L I + + GSY CEVS + +L+V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD-CSNFNLTV 106
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 82.0 bits (203), Expect = 7e-19
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
P P + TL Q + ++ V+W + G RGY++ G ++ K
Sbjct: 14 APDGPPMDVTL-QPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72
Query: 460 --GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
G+S +D ++ V AFN A GP S I+ T E P
Sbjct: 73 ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 80.5 bits (199), Expect = 2e-18
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 491 PSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGT 547
S T E P + P+ S + + W P E NGV+ GY+I Y+
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYREN-SP 60
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ + + L L+ +Y + + + +AG G S
Sbjct: 61 GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS 107
Score = 50.8 bits (122), Expect = 6e-08
Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 38/143 (26%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
P P +V + T ++ ++W A + N Y+I +R ++ G
Sbjct: 14 APDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGS----------- 62
Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
+G+ SI E+ G+S +D ++ V
Sbjct: 63 --------------------------NGQYSIVEMKAT-GDSEVYTLDNLKKFAQYGVVV 95
Query: 720 LAFNGAYNGPPSEIISFVTPEGG 742
AFN A GP S I+ T E G
Sbjct: 96 QAFNRAGTGPSSSEINATTLESG 118
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 83.8 bits (207), Expect = 7e-19
Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 27/186 (14%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP--NRI------- 182
+ I VTF S +P E+ W +++ + R NR+
Sbjct: 2 SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 183 --TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
TI NL SD Y + N + +YV + P I + LTC
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMI--------YWECSNATLTC 112
Query: 241 RVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG 300
V E+ ++ L R ++ + C A N++
Sbjct: 113 EVLEGTDVELKLYQGKEHLRSLR-------QKTMSYQWTNLRAPFKCKAVNRVSQESEME 165
Query: 301 SLTVKE 306
+ E
Sbjct: 166 VVNCPE 171
Score = 63.8 bits (155), Expect = 5e-12
Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 30/158 (18%)
Query: 59 GTPLPQTIWSKDGVPI------------NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
PL + +W K + + +R+ SL I ++ SD+ Y E
Sbjct: 20 NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI 166
N K L VL V I E T C+ + E+ + +
Sbjct: 80 PNITDTMK---FFLYVLEM----VSKPMIY-WECSNATLTCEVLEGTDVELKLYQGKEHL 131
Query: 167 SQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204
+ T+ + + C A N +
Sbjct: 132 RS----------LRQKTMSYQWTNLRAPFKCKAVNRVS 159
Score = 63.4 bits (154), Expect = 7e-12
Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 36/191 (18%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--------------TGGRYTILETG 270
+ Y V V P EV W + ++ Y +G
Sbjct: 2 SQQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
L I ++ +D EY + N T L V E + +AT C
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTM--KFFLYVLEMV-----SKPMIYWECSNATLTCE 113
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
+ + + +G E + + T++ + C+A +
Sbjct: 114 VLEGTD--VELKLYQGKEHL----------RSLRQKTMSYQWTNLRAPFKCKAVNRVS-- 159
Query: 391 EAQATLTVQVP 401
+ V P
Sbjct: 160 QESEMEVVNCP 170
Score = 40.3 bits (94), Expect = 7e-04
Identities = 7/82 (8%), Positives = 22/82 (26%), Gaps = 10/82 (12%)
Query: 41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
K + L C + + + + + + + +
Sbjct: 98 KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSYQWTNLRA 148
Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
+ C+ N V + +S ++
Sbjct: 149 PFKCKAVNRVSQ-ESEMEVVNC 169
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 81.3 bits (201), Expect = 1e-18
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
S GVP T L LG ++ + W +P L GY ++YQ + G +
Sbjct: 3 SGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPR-CERPLQGYSVEYQLLNGGE 61
Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ L I +P TS + L P+ Y + ++ G G E
Sbjct: 62 LHRLN-----IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRER 102
Score = 35.1 bits (81), Expect = 0.016
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
+ + + P+ + VSW P+ +GY V+ GE
Sbjct: 7 GSHDSRLTAGVPDTPTRLV-FSALGPTSLRVSWQE--PRC-ERPLQGYSVEYQLLNGGE- 61
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
+ L + T+ V+ +P RV A + G E + +T E
Sbjct: 62 -LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV--ITIESQVS 113
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 84.1 bits (208), Expect = 1e-18
Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 17/185 (9%)
Query: 510 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK-------VGPLLERLPYISDP 562
L + L+W+ P ++ +K++Y+ V K P +
Sbjct: 8 PNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELG 67
Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES---------KYLFYVPFKNPDNVEGRGS 613
+ +A + L+P YR + D ES P P+ +E
Sbjct: 68 KSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEY 127
Query: 614 TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQP 673
+ +V+ W+ Y ++R ++ + + + +A T
Sbjct: 128 SETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATM 186
Query: 674 YEIKV 678
YE K+
Sbjct: 187 YEFKL 191
Score = 71.8 bits (176), Expect = 2e-14
Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 24/193 (12%)
Query: 419 AVVSWNPVSPQSLRGHFRGYKVQ--------TWTE--KDGEGSIRELIVNKGESTTTEVD 468
++ W P++ +KVQ W + + G+S T V
Sbjct: 18 VMLRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVT 75
Query: 469 KFVPASK-NFARVLAFNGAYNGPPSEIISFVT-----PEGVPGTVQSLEAIPLGSSAFYL 522
P F R+LA + S + + LE +A L
Sbjct: 76 DLKPQHTYRF-RILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVL 134
Query: 523 KWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH 581
W + ++ GY Y+ I S K+A LE +T Y
Sbjct: 135 HWSLASDADEHLITGYYAYYRPSSSAGEYFKAT----IEGAHARSFKIAPLETATMYEFK 190
Query: 582 LAGYTKAGDGAES 594
L ++ A S
Sbjct: 191 LQSFSAASASEFS 203
Score = 41.3 bits (97), Expect = 4e-04
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 5/107 (4%)
Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF-RGYKVQTWTEKDGEGSI 452
P+ P I+ V+ W+ H GY + G
Sbjct: 108 QPGAALDPMPVPELLE-IEEYSETAVVLHWSL--ASDADEHLITGYYAY-YRPSSSAGEY 163
Query: 453 RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
+ + + + ++ A+ ++ +F+ A S + T
Sbjct: 164 FKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 29.4 bits (66), Expect = 3.5
Identities = 16/135 (11%), Positives = 33/135 (24%), Gaps = 34/135 (25%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P + ++++ W P P +++ +R + W +
Sbjct: 5 PTPPNVTRLSDESVMLRWMV-PR-NDGLPIVIFKVQYRMVGKRKNWQTTN---------- 52
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK-NFARVLAFN 723
+ + G+S T V P F R+LA
Sbjct: 53 --------------------DNIPYGKPKWNSELGKSFTASVTDLKPQHTYRF-RILAVY 91
Query: 724 GAYNGPPSEIISFVT 738
+ S +
Sbjct: 92 SNNDNKESNTSAKFY 106
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 85.7 bits (211), Expect = 2e-18
Identities = 42/292 (14%), Positives = 75/292 (25%), Gaps = 30/292 (10%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
+V P + +V C S + P+ + G NR E
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGI---ETPLPKKELLLP---GNNRKVYELSN 56
Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG---A 245
+ C + G ++ V + AP + GK + L C+V G
Sbjct: 57 VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116
Query: 246 PKPEVNWIHNQKELTGGRYTI-LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
V + +KEL + ++C L
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
Query: 305 KEHTHITDQ---------PEDYEVEAGQSATFRCNAVSD-PSLKLSIVWLRGSEPIDFES 354
+ +E T C+ P + + G + ++
Sbjct: 177 SAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN--- 233
Query: 355 EPRFVQSNDYSLTVTKSSEL---DSG--QYTCRAQTELDFIEAQATLTVQVP 401
V + S + S + D G + TC E T+T+
Sbjct: 234 --PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283
Score = 77.2 bits (189), Expect = 1e-15
Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 15/190 (7%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH--NQKELTGGRYTILETGDLKITDV 277
+ + +P G +V++TC + +KEL ++++V
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKV---YELSNV 57
Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVK---EHTHITDQPEDYEVEAGQSATFRCNAV-S 333
+ + C++ G + LTV E + P G++ T RC
Sbjct: 58 Q--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSW--QPVGKNLTLRCQVEGG 113
Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ 393
P L++V LRG + + EP + + + TV + ++CR + +L +
Sbjct: 114 APRANLTVVLLRGEKELK--REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171
Query: 394 ATLTVQVPLE 403
P +
Sbjct: 172 LFENTSAPYQ 181
Score = 53.3 bits (127), Expect = 1e-07
Identities = 22/208 (10%), Positives = 46/208 (22%), Gaps = 16/208 (7%)
Query: 30 RHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTI--WSKDGVPINPSDRISQGNYG 86
P++ + K + L C + GG P + + + +
Sbjct: 83 YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA-E 141
Query: 87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSY-------SIDLSVLAAPYFTVEPEFINAAE 139
+ + +++C + L P + E
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201
Query: 140 E-ETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY 195
T C GL E ++H + ++ T
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261
Query: 196 GCNATNSLGYVYKDVYVNVLAH-APEIT 222
C V + + AP +
Sbjct: 262 TCAVILGNQSQETLQTVTIYSFPAPNVI 289
Score = 36.8 bits (84), Expect = 0.018
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
P + G S C+ D L I + + + + S+
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKEL--------LLPGNNRKVYELSN 56
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ Q C + A+ LTV E
Sbjct: 57 VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVE 90
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 88.2 bits (219), Expect = 2e-18
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 218 APEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKEL----TGGRYTILETGDL 272
I + + VD G TV CR G P P + W+ +K L + GR T+ G L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
++ D+G Y C A N G L V+
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 78.2 bits (193), Expect = 3e-15
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 119 DLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG 178
+ A + + + E TV F C+A G P P I W+ K + A N R V
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF 438
Query: 179 PNRI-TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
P+ + + D G Y C A N+ G +++V
Sbjct: 439 PDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 61.3 bits (149), Expect = 7e-10
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP-IDFESEPRFVQSNDYSLTV 368
+ + V+ G + F C A DP +I+WL + + +S R D +L V
Sbjct: 388 RDRKAQQVFVDEGHTVQFVCRADGDP--PPAILWLSPRKHLVSAKSNGRLTVFPDGTLEV 445
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ D+G Y C A A L V+
Sbjct: 446 RYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 59.0 bits (143), Expect = 3e-09
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG---VPINPSDRISQGNYGKS 88
+ + ++ V+ C G P P +W V + R++ G +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-T 442
Query: 89 LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
L +++ + D G+Y C +N G S L V
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGND-SMPAHLHV 475
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 88.8 bits (219), Expect = 2e-18
Identities = 88/692 (12%), Positives = 159/692 (22%), Gaps = 136/692 (19%)
Query: 158 HWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
++ +G+ + PP + + + + + + H
Sbjct: 230 NFYLDGRCVETCPPPYYHFQDWRCVNFS---------FCQDLHHKCKNSRRQGCHQYVIH 280
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEV-------NWIHNQKELTGGRYTILETG 270
+ YT++ + C P P+V I + R + G
Sbjct: 281 NNKCIPECPSGYTMNSSNL--LCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP-----EDYEVEAGQSA 325
L I + + SG L ++ + E +
Sbjct: 339 SLIINIRGGNNLAAELEANLGLIEEI--SGYLKIRRSYALVSLSFFRKLRLIRGETLEIG 396
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
+ A+ + +L+ +W + F N + S + +
Sbjct: 397 NYSFYALDNQNLR--QLWDWSKHNLTITQGKLFFHYNPK---LCLSEIHKMEEVSGTKGR 451
Query: 386 ELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQ---- 441
+ A T Q E K ++ W P P R G+ +
Sbjct: 452 QERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRD-LLGFMLFYKEA 510
Query: 442 -----------------TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN 484
+WT D + +R + P ++ V
Sbjct: 511 PYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLV 570
Query: 485 GA-----YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKI 539
G S+II T P ++ SS LKW P PNG + Y +
Sbjct: 571 TFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLV 630
Query: 540 KYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL-- 597
++ L L Y PS +
Sbjct: 631 FWERQAED---SELFELDYCLKGL--------KLPSRTWSPPFESEDSQKHNQSEYEDSA 679
Query: 598 ---FYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDD 654
P + ++ + + P K R N G
Sbjct: 680 GECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRP 739
Query: 655 V-LDWRQSELVLANQPTFQPYEIKV-------------------VQT------------- 681
+ LV++ F Y I++ +T
Sbjct: 740 FEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPV 799
Query: 682 -------------WTE-KDGEGSIRELIVNKGESTTTEVDKFVPASKN------------ 715
W E K+ G I V+ E+
Sbjct: 800 THEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLS 859
Query: 716 ----FARVLAFNGAYNGPPSEIISFVTPEGGT 743
R+ A + A NG +E F +
Sbjct: 860 PGNYSVRIRATSLAGNGSWTEPTYFYVTDYLD 891
Score = 48.4 bits (114), Expect = 8e-06
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 395 TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE 454
T+ + T ++ + + W P+ G Y+V D E + +
Sbjct: 786 TMPEAKADDIVGPVT-HEIFENNVVHLMWQE--PKEPNGLIVLYEVSYRRYGDEELHLCD 842
Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG--VPGTV 507
+ + P + + R+ A + A NG +E F + VP +
Sbjct: 843 TRKHFALERGCRLRGLSPGNYSV-RIRATSLAGNGSWTEPTYFYVTDYLDVPSNI 896
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 87.5 bits (217), Expect = 3e-18
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDL 272
AP I +AP+D +G+ L CR P V W+ + R ++L G L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH 309
+ V +D+G YTC N G + S L V
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
Score = 79.0 bits (195), Expect = 1e-15
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNR-I 182
AP+ P +N +E +C+ P + W+ NG +S A +PR V + +
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
++ SDTG Y C TN G Y+NV
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 68.2 bits (167), Expect = 4e-12
Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL--RGSEPIDFESEPRFVQSND 363
I D P D + G+ A +C S + WL G+ PR ND
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLND 406
Query: 364 YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV-PLEAPSNF 408
+L + D+G YTC A A L V +
Sbjct: 407 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452
Score = 51.7 bits (124), Expect = 5e-07
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKD-GVPINPS---DRISQGNYGKSLIIKHVEFSDQG 100
+ EL C P+ W G ++ + RIS N G +L HV SD G
Sbjct: 364 ISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG-TLNFSHVLLSDTG 420
Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAP 126
YTC V+N G + + S L+V A
Sbjct: 421 VYTCMVTNVAGNS-NASAYLNVSTAG 445
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 78.9 bits (195), Expect = 4e-18
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
E+ + G+T + P W + L I+E G L +
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ +GE + A + + +L VKE
Sbjct: 65 HNCQLGMTGEVSFQA----ANTKSAANLKVKE 92
Score = 64.6 bits (158), Expect = 5e-13
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
A + ET FE + S P+ W G+P++ +P ++ +
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLA---ASPDCEIIEDGKK 59
Query: 181 -RITIENLRKSDTGNYGCNATNS 202
+ + N + TG A N+
Sbjct: 60 HILILHNCQLGMTGEVSFQAANT 82
Score = 63.5 bits (155), Expect = 1e-12
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
+ EV G++A F +S+P + W +P+ + P D +
Sbjct: 7 EVEKPLYGVEVFVGETAHFEI-ELSEPDVH--GQWKLKGQPL--AASPDCEIIEDGKKHI 61
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
L + +G+ + +A ++ A L V+
Sbjct: 62 LILHNCQLGMTGEVSFQAANT----KSAANLKVK 91
Score = 60.4 bits (147), Expect = 1e-11
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSY 102
+ P W G P+ S GK LI+ + + G
Sbjct: 17 VFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEV 75
Query: 103 TCEVSNGVGEAK 114
+ + +N A
Sbjct: 76 SFQAANTKSAAN 87
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 79.8 bits (197), Expect = 4e-18
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
+ S + + +P + + + + S L W P + G + + + +
Sbjct: 2 SSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDN 61
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ ER + P + + L+P Y + Y + G G S
Sbjct: 62 R-----ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESS 103
Score = 48.6 bits (116), Expect = 4e-07
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR 453
A + V AP + + V ++ +SW P P +G+ + + V E D R
Sbjct: 10 AIPSSSVLPSAPRDVVPVLV-SSRFVRLSWRP--PAEAKGNIQTFTVFFSREGDNRE--R 64
Query: 454 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
L + S V P + RV+A+N G S+ I T
Sbjct: 65 ALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115
Score = 33.9 bits (78), Expect = 0.046
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 684 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
++G+ R L + S V P + RV+A+N G S+ I T
Sbjct: 56 SREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQP 112
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 78.9 bits (195), Expect = 5e-18
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTILETGD-- 271
I +D+ G V + V +V W+ N ELT RY + G
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L +DV D G Y A+ L V+E
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGGQCEAE----LIVEE 99
Score = 64.7 bits (158), Expect = 5e-13
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR----KVGP 179
E + V + S ++ W+ NG +++ R K G
Sbjct: 7 GPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 180 NRI-TIENLRKSDTGNYGCNATNS 202
I ++ + D G Y
Sbjct: 66 RHILIFSDVVQEDRGRYQVITNGG 89
Score = 63.1 bits (154), Expect = 2e-12
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI--DFESEPR 357
GS I ED +V G VS+ ++W++ + + + R
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVFVGDRVEMAV-EVSEE--GAQVMWMKNGVELTREDSFKAR 57
Query: 358 FVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ D + L + + D G+Y + +A L V+
Sbjct: 58 YRFKKDGKRHILIFSDVVQEDRGRYQVITNGG----QCEAELIVEEK 100
Score = 58.1 bits (141), Expect = 9e-11
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD------RISQGNYGKSLIIKHVEFSD 98
+VE+ Q +W K+GV + D R + LI V D
Sbjct: 20 VFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQED 78
Query: 99 QGSYTCEVSNGVGEAK 114
+G Y + G EA+
Sbjct: 79 RGRYQVITNGGQCEAE 94
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 84.6 bits (208), Expect = 5e-18
Identities = 46/297 (15%), Positives = 81/297 (27%), Gaps = 20/297 (6%)
Query: 308 THITDQPEDYEVEAGQSATFRC---NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY 364
HI+ V G T C S + I+W G+E + R
Sbjct: 3 GHIS--VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQE 60
Query: 365 S-LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSW 423
S +T+ + + I Q L P P N + + + + W
Sbjct: 61 SIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQW 120
Query: 424 NPVSPQSLRGHFR-GYKVQTWTEKDGEGSIRELIVNKGE-STTTEVDKFVPASKNFARVL 481
P L F + SI + + G+ + + V
Sbjct: 121 EPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQ 180
Query: 482 AFNGA-------YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVL 534
A N P +++ P EA P + L W + +
Sbjct: 181 AENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSP-EAAPPQAGCLQLSWEPWQPGLHIN 239
Query: 535 MGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
+++++ +G L +L GL P+T Y + + G
Sbjct: 240 QKCELRHKPQRGEAS----WALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPG 292
Score = 53.0 bits (126), Expect = 1e-07
Identities = 38/311 (12%), Positives = 82/311 (26%), Gaps = 36/311 (11%)
Query: 225 PKDEYTVDGKTVVLTCRV-----FGAPKPEVNWIHNQKELTGGRYTILETG----DLKIT 275
G + +C + P+P++ W + GGR L G + +
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA-GQSATFRC--NAV 332
+ + L + P + +++ C
Sbjct: 67 HLNHTQAFLSCSLNWGNSLQILDQVELRA---GYPPAIPHNLSCLMNLTTSSLICQWEPG 123
Query: 333 SDPSLKLSIVWLRGSEPIDFESE-----PRFVQSNDYSLTVTKSSELDSGQYT--CRAQT 385
+ L S + +++ + ++ + L +A+
Sbjct: 124 PETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAEN 183
Query: 386 ELDFIE---AQATLTVQVPLEAPSNFTLIQVIDAKKA-----VVSWNPVSPQSLRGHFRG 437
L V LE P T+ +A +SW P P
Sbjct: 184 ALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-- 241
Query: 438 YKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---I 494
+++ ++ E S + E+ E+ +PA+ ++ G S+
Sbjct: 242 CELRHKPQRG-EASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPS 300
Query: 495 ISFVTPEGVPG 505
+ T E
Sbjct: 301 LELRTTERAAA 311
Score = 40.7 bits (94), Expect = 0.001
Identities = 20/193 (10%), Positives = 46/193 (23%), Gaps = 14/193 (7%)
Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 557
+ P +L + +++ + +P + + +K +G L
Sbjct: 93 LRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILD 152
Query: 558 YISDPTTTSA--KLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV-------PFKNPD-- 606
+ + L I + G + P
Sbjct: 153 CVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMD 212
Query: 607 -NVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVL 665
+ E L +SW H + K + + +W L + L
Sbjct: 213 PSPEAAPPQAGCLQLSWEPWQPGLHI--NQKCELRHKPQRGEASWALVGPLPLEALQYEL 270
Query: 666 ANQPTFQPYEIKV 678
Y +++
Sbjct: 271 CGLLPATAYTLQI 283
Score = 29.9 bits (66), Expect = 3.0
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 13/121 (10%)
Query: 129 TVEPEFINAAEEETVTFECKAS-----GLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-- 181
+ + +T C PEP+I W + P ++++
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQ---PGGRQQRLSDGTQE 60
Query: 182 --ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLT 239
IT+ +L + C+ D + P I + +++
Sbjct: 61 SIITLPHLNHTQ-AFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQ 119
Query: 240 C 240
Sbjct: 120 W 120
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 78.6 bits (194), Expect = 6e-18
Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 218 APEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---L 272
+ Y VD G V + PK EV W N +E+ +Y G L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
I + D EY A G + S L V+
Sbjct: 66 FINNCQMTDDSEYYVTA----GDEKCSTELFVRS 95
Score = 64.3 bits (157), Expect = 7e-13
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLTVTKSS 372
Y+V+ G F ++DP L+ + W + + I ++ F L +
Sbjct: 15 DPAYQVDKGGRVRFVVE-LADPKLE--VKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQ 71
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVP 401
D +Y A E + L V+
Sbjct: 72 MTDDSEYYVTAGDE----KCSTELFVRSG 96
Score = 63.2 bits (154), Expect = 2e-12
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSY 102
+ +V P + W K+G I PS + + L I + + +D Y
Sbjct: 20 VDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEY 78
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAP 126
G+ K S +L V + P
Sbjct: 79 YVT----AGDEKC-STELFVRSGP 97
Score = 57.0 bits (138), Expect = 2e-10
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 124 AAPYFTVE-PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----G 178
+ F + V F + + P+ E+ W NG+ I P+ +
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIR---PSTKYIFEHKGC 61
Query: 179 PNRITIENLRKSDTGNYGCNATNS 202
+ I N + +D Y A +
Sbjct: 62 QRILFINNCQMTDDSEYYVTAGDE 85
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 78.6 bits (194), Expect = 7e-18
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
IT+ K ++G++ C + + W K + R+ G L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ + A +D+GE R A L V+E
Sbjct: 69 VREAAPSDAGEVVFSVRGLTSKAS----LIVRE 97
Score = 74.0 bits (182), Expect = 3e-16
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
GS H IT + + EV G+S +F C +S S +W G + + S RF
Sbjct: 1 GSSGSSGHVGITKRLKTMEVLEGESCSFECV-LSHESASDPAMWTVGGKTV--GSSSRFQ 57
Query: 360 QSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ Y L V +++ D+G+ + ++A+L V+
Sbjct: 58 ATRQGRKYILVVREAAPSDAGEVVFSVRGL----TSKASLIVRER 98
Score = 63.6 bits (155), Expect = 1e-12
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 45 ALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
L + C + + +W+ G + S R G+ L+++ SD G
Sbjct: 20 VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGE 79
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
V +A L V
Sbjct: 80 VVFSVRGLTSKAS-----LIVRERS 99
Score = 63.6 bits (155), Expect = 1e-12
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 8/86 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKV----G 178
T + + E E+ +FEC S W GK + + R +
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV---GSSSRFQATRQGR 63
Query: 179 PNRITIENLRKSDTGNYGCNATNSLG 204
+ + SD G +
Sbjct: 64 KYILVVREAAPSDAGEVVFSVRGLTS 89
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 78.3 bits (193), Expect = 7e-18
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 212 VNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYTILET 269
+ + +T + +V G V C +P + W R +
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFN 61
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
G L I +V +D+G Y C N QG+ +L V+
Sbjct: 62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 74.1 bits (182), Expect = 3e-16
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 120 LSVLAAPYFTV--EPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRK 176
L+ + P E + VTF C A S P + W R
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH----NGKLPSRAM 58
Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+TI N++ SD G Y C +N ++V
Sbjct: 59 DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 67.1 bits (164), Expect = 6e-14
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
++ V G TF C A S P ++VW R R + N LT+
Sbjct: 13 TVEEQRSQSVRPGADVTFICTAKSKSP--AYTLVWTRLHNGKL---PSRAMDFNG-ILTI 66
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
D+G Y C + ATL VQV
Sbjct: 67 RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 59.8 bits (145), Expect = 2e-11
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 51 VELFCI-FGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
V C +P +W++ PS + L I++V+ SD G+Y C SN
Sbjct: 28 VTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG---ILTIRNVQPSDAGTYVCTGSNM 84
Query: 110 VGEAKSYSIDLSV 122
+ L V
Sbjct: 85 FAMD-QGTATLHV 96
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 78.6 bits (194), Expect = 7e-18
Identities = 24/93 (25%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
E+ + D + V C V K W N E+ R TI G L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
I DV D G+YT + S L E
Sbjct: 67 IDDVRPEDEGDYTFVPDGYALSL--SAKLNFLE 97
Score = 67.0 bits (164), Expect = 8e-14
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
GS + D V+A + A F+C VSD K++ W + + R
Sbjct: 1 GSSGSSGQLEVLQDIADLTVKAAEQAVFKC-EVSDE--KVTGKWYKNGVEV--RPSKRIT 55
Query: 360 QSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPS 406
S+ + L + D G YT + A L + + PS
Sbjct: 56 ISHVGRFHKLVIDDVRPEDEGDYTFVPDGYA--LSLSAKLNFLEIKVSGPS 104
Score = 65.1 bits (159), Expect = 4e-13
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
+ + E F+C+ S + W NG + P+ R +
Sbjct: 7 GQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVR---PSKRITISHVGRF 62
Query: 181 -RITIENLRKSDTGNYGCNATNSLG 204
++ I+++R D G+Y
Sbjct: 63 HKLVIDDVRPEDEGDYTFVPDGYAL 87
Score = 64.7 bits (158), Expect = 5e-13
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSY 102
++ C W K+GV + PS R IS L+I V D+G Y
Sbjct: 20 VKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDY 78
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAP 126
T S L+ L
Sbjct: 79 TFVPDGYALSL---SAKLNFLEIK 99
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 78.6 bits (194), Expect = 7e-18
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ P TV + + + L W +PEQPNG+++ Y+I+Y + E
Sbjct: 3 SGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHN------EFNSS 56
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
++ T +A++ GL P Y + + T AG G S
Sbjct: 57 MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFS 92
Score = 47.4 bits (113), Expect = 7e-07
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 403 EAPSNFTLIQV--IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
PS ++ + +SW P+ G Y+++ + ++ E + + +
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQ--PEQPNGIILDYEIRYYEKEHNEFNSS---MARS 60
Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
++ T +D P +V A A G S + F T
Sbjct: 61 QTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104
Score = 32.4 bits (74), Expect = 0.13
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
YEI+ + ++ E + + + ++ T +D P +V A A G S
Sbjct: 41 YEIRY---YEKEHNEFNSS---MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGK 94
Query: 734 ISFVTPE 740
+ F T
Sbjct: 95 MCFQTLT 101
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 79.1 bits (195), Expect = 9e-18
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 1/105 (0%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
P AP N T+ + + W + G GY++ + G L
Sbjct: 17 APSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISK-ELLEEVG 75
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+ + V + R+ A GP S+ + P
Sbjct: 76 QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSG 120
Score = 76.4 bits (188), Expect = 8e-17
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 489 GPPSEIISFVTPEGVP-GTVQSLEA-IPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSV 544
S I T EG P ++ + S ++W+KP +Q +G L+GY+I +
Sbjct: 3 SGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQ 62
Query: 545 KGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
LLE + + A+++ + + +A T+ G G S
Sbjct: 63 SAGISKELLEEVG----QNGSRARISVQVHNATCTVRIAAVTRGGVGPFS 108
Score = 51.3 bits (123), Expect = 4e-08
Identities = 20/144 (13%), Positives = 35/144 (24%), Gaps = 42/144 (29%)
Query: 600 VPFKNPDNVE-GRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDW 658
P P NV + +N+ I W P + + YRI + G + + +
Sbjct: 17 APSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQ 76
Query: 659 RQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 718
S ++ Q + R
Sbjct: 77 NGSRARISVQVHNATCTV-----------------------------------------R 95
Query: 719 VLAFNGAYNGPPSEIISFVTPEGG 742
+ A GP S+ + P
Sbjct: 96 IAAVTRGGVGPFSDPVKIFIPAHS 119
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 79.8 bits (197), Expect = 2e-17
Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 23/196 (11%)
Query: 396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
+ L+ P + + + W F Y++ + G+ + E+
Sbjct: 1 INAGTDLDNPKDLE-VSDPTETTLSLRWRRPV-----AKFDRYRLT-YVSPSGKKNEMEI 53
Query: 456 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPL 515
V+ ST+ + ++ ++A G + P+ + V G+ + + +
Sbjct: 54 PVD---STSFILRGLDAGTEYTISLVAEKGRHKSKPTT----IKGSTVVGSPKGISFSDI 106
Query: 516 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
++ + W P + Y++ Y + G + D + T KL L P
Sbjct: 107 TENSATVSW---TPPRSRVDSYRVSYVPITGGTPNVV------TVDGSKTRTKLVKLVPG 157
Query: 576 TKYRIHLAGYTKAGDG 591
Y +++ +
Sbjct: 158 VDYNVNIISVKGFEES 173
Score = 69.4 bits (170), Expect = 8e-14
Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 17/182 (9%)
Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 557
+ + LE + L+W +P Y++ Y S G K
Sbjct: 1 INAGTDLDNPKDLEVSDPTETTLSLRW---RRPVAKFDRYRLTYVSPSGKKN-------E 50
Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNN 617
+TS L GL+ T+Y I L + +P + T N+
Sbjct: 51 MEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENS 110
Query: 618 LVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIK 677
+SWT + YR+ + G +D ++ L Y +
Sbjct: 111 ATVSWTP-----PRSRVDSYRVSYVPITGGTPNVVT--VDGSKTRTKLVKLVPGVDYNVN 163
Query: 678 VV 679
++
Sbjct: 164 II 165
Score = 44.7 bits (106), Expect = 2e-05
Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 26/187 (13%)
Query: 327 FRCNAVSDPSLKLSIVWLRGSEPIDF----------ESEPRFVQSNDYSLTVTKSSELDS 376
+ ++ +L L W R D + + + S + LD+
Sbjct: 13 LEVSDPTETTLSLR--WRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILR---GLDA 67
Query: 377 G-QYTCRAQTELDFIEAQA-TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH 434
G +YT E +++ T+ + +P + + A VSW P
Sbjct: 68 GTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDI-TENSATVSWTPPR-----SR 121
Query: 435 FRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 494
Y+V ++ G G+ + V+ G T T++ K VP +++ G P
Sbjct: 122 VDSYRV-SYVPITG-GTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISG 178
Query: 495 ISFVTPE 501
I +
Sbjct: 179 ILKTALD 185
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 82.2 bits (202), Expect = 3e-17
Identities = 59/299 (19%), Positives = 99/299 (33%), Gaps = 26/299 (8%)
Query: 304 VKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSI-----VWLRGSEPIDFESEPRF 358
+ +I+ PE V+ + T C + VW I E
Sbjct: 3 LDPCGYIS--PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP--KEQYT 58
Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQT--ELDFIEAQATLTVQVPLEAPSNFTLIQVIDA 416
+ + S + Q TC T +L+ T+ +P E P N + I V +
Sbjct: 59 IINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCI-VNEG 117
Query: 417 KKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDK-FVPASK 475
KK W+ L +F T + + + T+ VD V
Sbjct: 118 KKMRCEWDGGRETHLETNF------TLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN 171
Query: 476 NFARVLAFNGAYNGPPSEIISFVTPEGV---PGTVQSLEAIPLGSSAFYLKWVKPEQPNG 532
V A N S+ I+F V P S+ SS L W P +
Sbjct: 172 IEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV 230
Query: 533 VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
+++ Y I+Y++ + + P + T +S + L+P T+Y + + G G
Sbjct: 231 IILKYNIQYRTKDASTWSQI---PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 286
Score = 66.0 bits (160), Expect = 8e-12
Identities = 43/296 (14%), Positives = 87/296 (29%), Gaps = 24/296 (8%)
Query: 225 PKDEYTVDGKTVVLTCRV-------FGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
P+ C + F + W N + +YTI+ +T
Sbjct: 11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 70
Query: 278 AF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVSD 334
+ + + TC Q +T+ ++P++ + RC + +
Sbjct: 71 DIASLNIQLTCNILTFGQLEQNVYGITIIS-GLPPEKPKNLSCIVNEGKKMRCEWDGGRE 129
Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT--CRAQTELDFI-- 390
L+ + L+ ++ + + S TV S+ A+ L +
Sbjct: 130 THLETNFT-LKSEWATHKFADCKAKRDTPTSCTVDYSTVYFV-NIEVWVEAENALGKVTS 187
Query: 391 -EAQATLTVQVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
+V P N ++I + + ++W P Y +Q T+
Sbjct: 188 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN--PSIKSVIILKYNIQYRTKDAS 245
Query: 449 EGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGP---PSEIISFVTPE 501
S ++ V P ++ R+ G SE S +T E
Sbjct: 246 TWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 301
Score = 37.5 bits (86), Expect = 0.012
Identities = 33/265 (12%), Positives = 61/265 (23%), Gaps = 58/265 (21%)
Query: 486 AYNGPPSEIISFVTPEG-VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSV 544
+ + G P ++L I +W + + + +K +
Sbjct: 85 TFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLET-NFTLKSEWA 143
Query: 545 KGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY----V 600
+ PT+ + + + G F V
Sbjct: 144 THKFA----DCKAKRDTPTSCTVDY-STVYFVNIEVWVEAENALGKVTSDHINFDPVYKV 198
Query: 601 PFKNPDN--VEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDW 658
P N V + L ++WT + KY I +R + W+Q D
Sbjct: 199 KPNPPHNLSVINSEELSSILKLTWT--NPSIKSVIILKYNIQYRTKDAST-WSQIPPED- 254
Query: 659 RQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 718
++ V P ++ R
Sbjct: 255 --------------------------------------TASTRSSFTVQDLKPFTEYVFR 276
Query: 719 VLAFNGAYNGP---PSEIISFVTPE 740
+ G SE S +T E
Sbjct: 277 IRCMKEDGKGYWSDWSEEASGITYE 301
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 76.4 bits (188), Expect = 5e-17
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ P V + S+ L W P P+G ++ Y++KY
Sbjct: 3 SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEG-----PSSVR 57
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ A+L GL+ Y + + ++AG G
Sbjct: 58 FLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFG 93
Score = 46.7 bits (111), Expect = 1e-06
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ A S+ + + ++W P++ G Y+V+ + EK EG
Sbjct: 3 SGSSGPPAVSDIRVTRS-SPSSLSLAWAV--PRAPSGAVLDYEVK-YHEKGAEGPSSVRF 58
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPG 505
+ E+ + +V A + A GP + T + P
Sbjct: 59 LK-TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPS 107
Score = 33.2 bits (76), Expect = 0.056
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
YE+K + EK EG + E+ + +V A + A GP +
Sbjct: 41 YEVK----YHEKGAEGPSSVRFLK-TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
Query: 734 ISFVTPE 740
T
Sbjct: 96 HHSQTQL 102
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 75.9 bits (187), Expect = 6e-17
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
+ A ++ G + L+C V + EV W + K+L+ + + G L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT 308
A++GEY+C A G Q S L V
Sbjct: 71 QQAGQAEAGEYSCEA----GGQQLSFRLQVAGQC 100
Score = 64.0 bits (156), Expect = 1e-12
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSY 102
A L C + W KDG ++ S + + + L+++ ++ G Y
Sbjct: 23 AEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPY 127
+CE + L V +
Sbjct: 82 SCEAGGQQLSFR-----LQVAGQCF 101
Score = 60.9 bits (148), Expect = 1e-11
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-- 180
+ + A + T C+ + + E+ W +GK +S + + +V
Sbjct: 9 VVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLS---SSSKVRVEAVGC 64
Query: 181 --RITIENLRKSDTGNYGCNATNS 202
R+ ++ +++ G Y C A
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEAGGQ 88
Score = 60.5 bits (147), Expect = 1e-11
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 294 GTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
G++ SG + + + + EAG SAT C V+ + + W + + +
Sbjct: 1 GSSGSSGKVVFAK---EQPAHREVQAEAGASATLSCE-VAQAQTE--VTWYKDGKKL--S 52
Query: 354 SEPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
S + L V ++ + ++G+Y+C A + + L V
Sbjct: 53 SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ----QLSFRLQVA 97
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 75.4 bits (186), Expect = 1e-16
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--- 271
+T+ +D G+ V L C V V W N +E+ G RY I G
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L I AD+ EY+ Q S L+V
Sbjct: 66 LIIEGATKADAAEYSVMT----TGGQSSAKLSVDL 96
Score = 71.6 bits (176), Expect = 2e-15
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
+T Q ED G+ C VS+ ++ W + E I + R+ + +
Sbjct: 9 MVTKQLEDTTAYCGERVELECE-VSED--DANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
L + +++ D+ +Y+ ++ A L+V + PS
Sbjct: 66 LIIEGATKADAAEYSVMTTGG----QSSAKLSVDLK-SGPS 101
Score = 62.0 bits (151), Expect = 4e-12
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
+ T + E A E V EC+ S + + W NG+ I P R ++
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPG-PKSRYRIRVEGKK 63
Query: 181 -RITIENLRKSDTGNYGCNATNS 202
+ IE K+D Y T
Sbjct: 64 HILIIEGATKADAAEYSVMTTGG 86
Score = 58.1 bits (141), Expect = 9e-11
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKSLIIKHVEFSDQ 99
A ++VEL C W K+G I P RI LII+ +D
Sbjct: 18 TAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADA 76
Query: 100 GSYTCEVSNGVGEAK 114
Y+ + G AK
Sbjct: 77 AEYSVMTTGGQSSAK 91
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 78.6 bits (193), Expect = 1e-16
Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 34/208 (16%)
Query: 44 VALRNKKVELFCIFGGTPLPQT-----IWSKDGVPINP---------------------- 76
V L C + T W++ G +
Sbjct: 10 PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAA 69
Query: 77 SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
+ SL + + D+GSYTC ++S I L VLA P T E + +
Sbjct: 70 RLGAELRDA--SLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 127
Query: 137 AAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVG----PNRITIENLRKSD 191
E C ++G P +I W + + Q P G + + + D
Sbjct: 128 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVD 187
Query: 192 TGNYGCNATNSLGYVYKDVYVNVLAHAP 219
C + + + V++ + P
Sbjct: 188 GKQVTCKVEHESFEKPQLLTVSLTVYYP 215
Score = 70.5 bits (172), Expect = 8e-14
Identities = 39/216 (18%), Positives = 63/216 (29%), Gaps = 37/216 (17%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKP-----EVNWI--------------HNQKELTG 261
+ +AP G +V L C + ++ W
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 262 GRYTI------LETGD--LKITDVAFADSGEYTC-FARNKLGTAQGSGSLTVKEHTHITD 312
R E D L++ + D G YTC F G+ L V T
Sbjct: 62 KRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 121
Query: 313 QPEDYEVEAGQSATFRCNAV-SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS----LT 367
+ + ++ RC + P I W + S+ S +
Sbjct: 122 EVQKVQLTGEPVPMARCVSTGGRP--PAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWI 179
Query: 368 VTKSSELDSGQYTCRAQTEL--DFIEAQATLTVQVP 401
+ SS++D Q TC+ + E +LTV P
Sbjct: 180 LVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYP 215
Score = 68.6 bits (167), Expect = 3e-13
Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 38/208 (18%)
Query: 132 PEFINAAEEETVTFECKASGLPEP-----EIHWVHNGKPISQA----------PPNPR-- 174
P + ++VT C ++ W +G+ S A + R
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 175 -------RKVGPNRITIENLRKSDTGNYGCN-ATNSLGYVYKDVYVNVLAHAPEITEAPK 226
++ + + LR D G+Y C T G D+++ VLA P+ T +
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA-KPQNTAEVQ 124
Query: 227 DEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELT---------GGRYTILETGDLKITD 276
+ C G P ++ W + + G T+ T +
Sbjct: 125 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTV--TSLWILVP 182
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
+ D + TC ++ ++++
Sbjct: 183 SSQVDGKQVTCKVEHESFEKPQLLTVSL 210
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 75.2 bits (185), Expect = 1e-16
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 210 VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILE 268
++ V + VVLTC + P EV W + +E+ + +
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK 63
Query: 269 TGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L + V DSGEY C S ++TV E
Sbjct: 64 EDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTE 100
Score = 67.1 bits (164), Expect = 1e-13
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 10/114 (8%)
Query: 23 GISASQNRHAPKQQYVTRKKE--VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR- 79
G S S K A+R ++V L C P + W+KDG + S
Sbjct: 1 GSSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPAL 59
Query: 80 -ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
+ + + + L++ V+ D G Y CE + + + S ++V P +
Sbjct: 60 LLQKEDTVRRLVLPAVQLEDSGEYLCE----IDDESA-SFTVTVTEPPVRIIYS 108
Score = 62.9 bits (153), Expect = 3e-12
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 117 SIDLSVLAAPYFTVEPEF---INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP 173
S S + V P + A E V C+ P E+ W +G+ + +P
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEV---VESP 57
Query: 174 RRKV----GPNRITIENLRKSDTGNYGCNATN 201
+ R+ + ++ D+G Y C +
Sbjct: 58 ALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD 89
Score = 59.4 bits (144), Expect = 4e-11
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 15/110 (13%)
Query: 298 GSGSLTVKE---HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES 354
GS + + + C + P + + W + E +
Sbjct: 1 GSSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAE--VRWTKDGEEV--VE 55
Query: 355 EPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
P + + L + DSG+Y C E A T+TV P
Sbjct: 56 SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASFTVTVTEP 101
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 73.9 bits (182), Expect = 2e-16
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
+I D+ GK + L C + + W N + R +++ G L
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLV 64
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
I + D G+Y T + V
Sbjct: 65 IANALTEDEGDYVFAPDAYNVTL--PAKVHVIS 95
Score = 66.6 bits (163), Expect = 1e-13
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 44 VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
K++ L C + W+K+G+P+ SDR+ G+ L+I + D+G
Sbjct: 18 TVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGD 75
Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
Y + V++ P
Sbjct: 76 YVFAPDAYNVTL---PAKVHVISGP 97
Score = 62.7 bits (153), Expect = 2e-12
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 11/96 (11%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
I D V G+ +C + K W + P+ + R +
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEISENIPGK----WTKNGLPV--QESDRLKVVQKGRIHK 62
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
L + + D G Y + + A + V
Sbjct: 63 LVIANALTEDEGDYVFAP--DAYNVTLPAKVHVISG 96
Score = 60.8 bits (148), Expect = 1e-11
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 9/82 (10%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
+ + + +C+ S W NG P+ + R KV
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISE--NIPGKWTKNGLPVQ---ESDRLKVVQKGRI 60
Query: 181 -RITIENLRKSDTGNYGCNATN 201
++ I N D G+Y
Sbjct: 61 HKLVIANALTEDEGDYVFAPDA 82
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 74.3 bits (182), Expect = 3e-16
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN--WIHNQKELTG------------GRY 264
P+IT P+ + + G V TC + + W + + L G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG-SLTV 304
+ T L++ +V F G Y C N G++ LT+
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 72.4 bits (177), Expect = 1e-15
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH--WVHNGKPISQAPPNPRRKVGP 179
P TV+PE +A V+F C A+ + + W + + + A +
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 180 NR---------ITIENLRKSDTGNYGCNATNSLGYVY 207
+ + N+ + G Y C +N G Y
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103
Score = 66.3 bits (161), Expect = 2e-13
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY---- 364
IT QPE G +F C+A S ++ W +E + +
Sbjct: 12 QITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71
Query: 365 -----SLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTV 398
L + G Y C + A LT+
Sbjct: 72 MEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 53.9 bits (129), Expect = 4e-09
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 44 VALRNKKVELFCIFGGTPLP--QTIWSKDGVPINPSDRISQ----------GNYGKSLII 91
A+ V C + W D + ++ + Y L +
Sbjct: 21 SAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRL 80
Query: 92 KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
++VEF+ +G Y C +SN G + S L++
Sbjct: 81 RNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 73.9 bits (182), Expect = 3e-16
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 499 TPEGVP-GTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLER 555
+ P G Q+L L +S L W P + NG ++ Y + ++ + +
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ------- 55
Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ T T L GL+P T Y I + +T G G S
Sbjct: 56 -ELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLS 93
Score = 57.7 bits (140), Expect = 1e-10
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
P P N + + ++W+P G Y V + + ++ + N
Sbjct: 6 SGPSGFPQNLH-VTGLTTSTTELAWDPPVLAERNGRIISYTVVFR-----DINSQQELQN 59
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
T + P + +V A+ +GP S I T
Sbjct: 60 ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 41.9 bits (99), Expect = 5e-05
Identities = 20/134 (14%), Positives = 33/134 (24%), Gaps = 45/134 (33%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P N+ G T + ++W E N Y + +R N+ + +
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT----DTRFT 67
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
L Y+I +V A+
Sbjct: 68 LTGLKPDTTYDI-----------------------------------------KVRAWTS 86
Query: 725 AYNGPPSEIISFVT 738
+GP S I T
Sbjct: 87 KGSGPLSPSIQSRT 100
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 73.8 bits (181), Expect = 5e-16
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 13/121 (10%)
Query: 132 PEFINAAEEETVTFEC---KASGLPEPEIHWVHNGKPISQAP--------PNPRRKVGPN 180
P + + C G P P + W+ NG +++ P V
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
+ + + GNY A N G + + P+D T
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM--DNPFEFNPEDPIPDTNSTSGDPV 121
Query: 241 R 241
Sbjct: 122 E 122
Score = 73.1 bits (179), Expect = 1e-15
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 14/101 (13%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY-----------T 265
H P + V+ + V G P P + W+ N L +
Sbjct: 2 HMPASVQL---HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ G L++ ++G YT A N G A S +
Sbjct: 59 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99
Score = 61.9 bits (150), Expect = 1e-11
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 49 KKVELFCIFG---GTPLPQTIWSKDGVPINPSDRI---------SQGNYGKSLIIKHVEF 96
++ +CI G P P W +G +N + I ++ L +
Sbjct: 13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 72
Query: 97 SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
+ G+YT +N G+A S SI + + P F PE
Sbjct: 73 VNNGNYTLLAANPFGQA-SASIMAAFMDNP-FEFNPE 107
Score = 41.9 bits (98), Expect = 1e-04
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY---------SLTV 368
+ P S+ WL ++ E+ F + + L +
Sbjct: 11 TAVEMHHWCIPFSVDGQP--APSLRWLFNGSVLN-ETSFIFTEFLEPAANETVRHGCLRL 67
Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ + +++G YT A A
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 73.6 bits (181), Expect = 6e-16
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKP-EQPNGVLMGYKIKYQSVKGT 547
S + T +P + + A + + L W P P+G + Y + Y
Sbjct: 3 SGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
+ ER+ S P + L P+T Y + K G G S
Sbjct: 63 R-----ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA 105
Score = 40.9 bits (96), Expect = 2e-04
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 6/115 (5%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSL-RGHFRGYKVQTWTEKDGE 449
A T AP + V + ++W P S G Y V + K+G
Sbjct: 7 GEHAPATTGPLPSAPRDVVASLV-STRFIKLTWRT--PASDPHGDNLTYSV--FYTKEGI 61
Query: 450 GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
R + + +PA+ RV+A N +G S + T
Sbjct: 62 ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESG 116
Score = 37.4 bits (87), Expect = 0.003
Identities = 15/136 (11%), Positives = 35/136 (25%), Gaps = 43/136 (31%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P +V + + ++W P + + + Y +F+ + ++ + ++
Sbjct: 21 PRDVVASLVSTRFIKLTWRT-PASDPHGDNLTYSVFYTKEGIAR-ERVENTSHPGEMQVT 78
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
+ N Y RV+A N
Sbjct: 79 IQNLMPATVYIF-----------------------------------------RVMAQNK 97
Query: 725 AYNGPPSEIISFVTPE 740
+G S + T
Sbjct: 98 HGSGESSAPLRVETQP 113
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 74.9 bits (184), Expect = 8e-16
Identities = 26/179 (14%), Positives = 46/179 (25%), Gaps = 29/179 (16%)
Query: 131 EPEFINAAEEETVTFECKASGLPEPE------------IHWVHNGKPISQAPP-NPRRKV 177
+NA VT L + + + NGK R +
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 178 GPN--RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKT 235
+ I N+ K D G+Y + + + V K +
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMVS------KPMIYWECSN 117
Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
LTC V E+ ++ L ++ + C A N++
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLR-------SLRQKTMSYQWTNLRAPFKCKAVNRVS 169
Score = 70.3 bits (172), Expect = 4e-14
Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 26/193 (13%)
Query: 31 HAPKQQYVTRKKEVALR-----NKKVELFCIFGGTPLPQTIWSKDGVPINP----SDRIS 81
+ V L + T + +G DR+
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63
Query: 82 QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
+L I +V D+G Y + + + + I + V +P E
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHETED--QWKITMEVYEMVS---KPMIY--WECS 116
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T C+ + E+ + + + T+ + + C A N
Sbjct: 117 NATLTCEVLEGTDVELKLYQGKEHLRS----------LRQKTMSYQWTNLRAPFKCKAVN 166
Query: 202 SLGYVYKDVYVNV 214
+ + VN
Sbjct: 167 RVSQESEMEVVNC 179
Score = 63.0 bits (153), Expect = 1e-11
Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 38/198 (19%)
Query: 222 TEAPKDEYTVDGKTVVLTCRV------------FGAPKPEVNWIHNQKELT-----GGRY 264
++ + + G V LT + + + N K+ R
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62
Query: 265 TIL-ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQ 323
+ G L+I +V+ D G+Y ++ Q ++ V E +
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMV-----SKPMIYWECS 116
Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
+AT C + ++L +G E + + T++ + C+A
Sbjct: 117 NATLTCEVLEGTDVELK--LYQGKEHL----------RSLRQKTMSYQWTNLRAPFKCKA 164
Query: 384 QTELDFIEAQATLTVQVP 401
+ + V P
Sbjct: 165 VNRVS--QESEMEVVNCP 180
Score = 48.3 bits (115), Expect = 1e-06
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 23/131 (17%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE---------SEPRF-----V 359
+ G + T S + + WL + E E F +
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQ-RLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP------SNFTLI-Q 412
+ +L + S+ D G Y R E + + T+ V + P SN TL +
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMVSKPMIYWECSNATLTCE 123
Query: 413 VIDAKKAVVSW 423
V++ +
Sbjct: 124 VLEGTDVELKL 134
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 72.0 bits (177), Expect = 2e-15
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
P AP + T+I +AV VSW P P G Y + +K+ +
Sbjct: 6 SGPTSAPKDLTVITREGKPRAVIVSWQP--PLEANGKITAYILFYTLDKNIPIDDWIMET 63
Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
G+ T ++ + + R+ A N GP S+ I F T +
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 67.0 bits (164), Expect = 1e-13
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
P P + + A + W P + NG + Y + Y K P+ + +
Sbjct: 8 PTSAPKDLT-VITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNI---PIDDWIMET 63
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ ++ L T Y + G G S
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLS 98
Score = 47.8 bits (114), Expect = 6e-07
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 679 VQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
+ +K+ + G+ T ++ + + R+ A N GP S+ I F T
Sbjct: 46 LFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
Query: 739 PE 740
+
Sbjct: 106 LK 107
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 74.3 bits (182), Expect = 2e-15
Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 27/196 (13%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPP---------------N 172
++ P +N E+VT + + I W+ N ++ P
Sbjct: 2 SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQG 61
Query: 173 PRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV 231
R + + + NL+ DTG+Y + + +L I +
Sbjct: 62 KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQ 121
Query: 232 DGK-TVVLTCRVFGA-PKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAFADSGEYTCF 288
+ + LTC V A W L + T+ + +YTC
Sbjct: 122 NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS-------SEQDYTCI 174
Query: 289 ARNKLGTAQGSGSLTV 304
A N + S S
Sbjct: 175 AENAVSNLSFSVSAQK 190
Score = 67.7 bits (165), Expect = 4e-13
Identities = 31/192 (16%), Positives = 53/192 (27%), Gaps = 29/192 (15%)
Query: 44 VALRNKKVELFCIF-GGTPLPQTIWSKDGVPI---------NPSDRISQGNYGK------ 87
+ + V L F G + W + + +P ++ GK
Sbjct: 9 NGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ 68
Query: 88 --SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE-ETVT 144
SL + +++ D GSY ++S S + V +
Sbjct: 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELH 128
Query: 145 FECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203
C W G +S PN + R S +Y C A N++
Sbjct: 129 LTCSVEDADDNVSFRWEALGNTLS---------SQPNLTVSWDPRISSEQDYTCIAENAV 179
Query: 204 GYVYKDVYVNVL 215
+ V L
Sbjct: 180 SNLSFSVSAQKL 191
Score = 63.1 bits (153), Expect = 2e-11
Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 38/204 (18%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT------------------- 260
++ P + G++V L G + W+ N+ L
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60
Query: 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HITDQPEDY 317
G R ++ L+++++ D+G Y K S +L + +T+ +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQ-L 119
Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS- 376
C+ V D +S W + + +LTV+ + S
Sbjct: 120 FQNMTCELHLTCS-VEDADDNVSFRWEALGNTLSSQP----------NLTVSWDPRISSE 168
Query: 377 GQYTCRAQTELDFIEAQATLTVQV 400
YTC A+ + +++ Q
Sbjct: 169 QDYTCIAENAVS--NLSFSVSAQK 190
Score = 46.1 bits (109), Expect = 9e-06
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 17/113 (15%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF----------------E 353
++ P G+S T + + I WL + F +
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPAGEKVN-FITWLFNETSLAFIVPHETKSPEIHVTNPK 59
Query: 354 SEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
R + YSL ++ D+G Y + T+ + TL + L
Sbjct: 60 QGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQ 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 77.2 bits (190), Expect = 2e-15
Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 12/119 (10%)
Query: 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS 190
+ A +T+T C ++ + + + N V + + ++
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 191 DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE 249
D G Y C A V + V +T+ G L P+
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVY------------NFTLHGHHDTLNAAADPWSHPQ 358
Score = 73.3 bits (180), Expect = 5e-14
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 3/88 (3%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKITDVAFAD 281
G T+ + C +V + +++ + GDL V D
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 312
Query: 282 SGEYTCFARNKLGTAQGSGSLTVKEHTH 309
G YTC+A + S L V T
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTL 340
Score = 64.5 bits (157), Expect = 3e-11
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
+ +E G + T RC+ K + +E + + V + L K
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTK--VWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTL 410
D G YTC A E L V + TL
Sbjct: 310 VEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTL 347
Score = 56.0 bits (135), Expect = 2e-08
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 17/109 (15%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEVS 107
+ + C + + S + +S N G L K V+ D G YTC
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-G-DLFFKKVQVEDGGVYTCYAM 321
Query: 108 NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPE 156
+ S++L V T A P+
Sbjct: 322 GETFNE-TLSVELKVYNFT-----------LHGHHDTLNAAADPWSHPQ 358
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 78.0 bits (192), Expect = 4e-15
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GG 262
Y +D + + P P +G++ CRV + P V W + +EL
Sbjct: 468 EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 527
Query: 263 RYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+Y G+ L I V D GEYT A+N GT + L V
Sbjct: 528 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 62.9 bits (153), Expect = 2e-10
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-- 183
P F V+P E ++ F C+ P + W + + + Q+ ++ N
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMKRYNGNDYGLT 541
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
I ++ D G Y A NS G + V++NV
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 60.2 bits (146), Expect = 1e-09
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
+C + P W KD + S + L I V+ D+G YT N
Sbjct: 500 ANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Query: 109 GVGEAKSYSIDLSV 122
G + + L+V
Sbjct: 560 SYGTKEE-IVFLNV 572
Score = 58.7 bits (142), Expect = 5e-09
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 305 KEHTHITDQPEDYEVEAGQSATFRC--NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS- 361
+ +P EV GQSA F C A S P + W + + + ++++
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV----VTWHKDDREL--KQSVKYMKRY 533
Query: 362 --NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
NDY LT+ + D G+YT RA+ E L V
Sbjct: 534 NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 70.6 bits (173), Expect = 5e-15
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 11/108 (10%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKG 546
S ++ T + P + L W VK + + GYK+ Y++
Sbjct: 3 SGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62
Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
V T ++ L Y I + T GDG S
Sbjct: 63 NNV---------QVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSS 101
Score = 58.7 bits (142), Expect = 8e-11
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
P + P N K +++W V GYKV T +
Sbjct: 17 PPSQPPGNVVWN--ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVL------ 68
Query: 460 GESTTTEVDKFVPASKN-FARVLAFNGAYNGPPSEIISFV-TPEGVPGT 506
+ T + +P ++ V A +G SE I P +
Sbjct: 69 -NTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPSS 116
Score = 32.5 bits (74), Expect = 0.12
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
P + P NV +T ++++W + +E+ + Y++F+R + + Q +
Sbjct: 17 PPSQPPGNVVWN-ATDTKVLLNWEQVKAMENESEVTGYKVFYRT--SSQNNVQVLNTNKT 73
Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEG 689
+ELVL P + Y I+ V+ T+ G+G
Sbjct: 74 SAELVL---PIKEDYIIE-VKATTDG-GDG 98
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 75.7 bits (186), Expect = 6e-15
Identities = 49/297 (16%), Positives = 88/297 (29%), Gaps = 41/297 (13%)
Query: 129 TVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKP----ISQAPPNPRRKVGPNR-- 181
+ ++ A E+ C + +P I W P I +V
Sbjct: 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSES 66
Query: 182 ---------ITIENLRKSDTGNYGCNATNSLGYVYKD-----VYVNVLAHAPEITEAPKD 227
I+I N+ +D G Y C + ++V A +
Sbjct: 67 TKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA 126
Query: 228 EYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYTILETGD---------LKITD 276
TV TC G +P+ + W N EL+ + + G+ K+
Sbjct: 127 ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVL 186
Query: 277 VAFADSGEYTCFARNKLGTA---QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS 333
+ C + +G+ +L+ T + V A C
Sbjct: 187 TREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRK 246
Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSND--YS----LTVTKSSELDSGQYTCRAQ 384
+L + WL E+ ++ D Y+ L V S+ D + TC+ +
Sbjct: 247 FYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVE 303
Score = 51.5 bits (123), Expect = 5e-07
Identities = 33/209 (15%), Positives = 57/209 (27%), Gaps = 20/209 (9%)
Query: 32 APKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTI-WSKDGVPI-----NPSDRISQGN 84
P V+ A V C G +P T+ W K+G + N +
Sbjct: 116 KPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVS 175
Query: 85 YGKS--LIIKHVEFSDQGSYTCEVSN--GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE 140
Y + CEV++ G+ + +LS T+E E
Sbjct: 176 YSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAE 235
Query: 141 ETVTFECKASGL-PEP-EIHWVHNGKPISQAPPNPRRKVGPN------RITIENLRKSDT 192
V C+ P+ ++ W+ NG + + + + D
Sbjct: 236 NQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDD 295
Query: 193 GNYGCNATN-SLGYVYKDVYVNVLAHAPE 220
C + V K + V
Sbjct: 296 VKLTCQVEHDGQPAVSKSHDLKVSTRHHH 324
Score = 34.5 bits (79), Expect = 0.10
Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 10/132 (7%)
Query: 3 WQSRSEYKIG-NRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFC-IFGGT 60
S+ + L +A+ + + ++ +V + C +
Sbjct: 189 EDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFY 248
Query: 61 PLPQTI-WSKDGVPIN-----PSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNGVGE 112
P + W ++G G Y L++ D TC+V +
Sbjct: 249 PQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQP 308
Query: 113 AKSYSIDLSVLA 124
A S S DL V
Sbjct: 309 AVSKSHDLKVST 320
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 69.7 bits (171), Expect = 8e-15
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
TP P + + LKW + N + G+ I Y+
Sbjct: 3 TPITGP---HIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD- 58
Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ + + + L+P T Y I + + + G+ S
Sbjct: 59 --VVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFS 94
Score = 62.4 bits (152), Expect = 4e-12
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 1/100 (1%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
P+ P + + + ++ W + + +G+ + S + V +
Sbjct: 3 TPITGPHIAY-TEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
G + P + ++ FN S ++ T
Sbjct: 62 GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 44.7 bits (106), Expect = 5e-06
Identities = 17/140 (12%), Positives = 42/140 (30%), Gaps = 42/140 (30%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNT-GEAWNQDDVLDW 658
P P + +++ WT +P +N P + I++R ++ ++ + DV++
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 659 RQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 718
+ ++ + Y+I +
Sbjct: 63 SKQWHMIGHLQPETSYDI-----------------------------------------K 81
Query: 719 VLAFNGAYNGPPSEIISFVT 738
+ FN S ++ T
Sbjct: 82 MQCFNEGGESEFSNVMICET 101
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 73.2 bits (179), Expect = 9e-15
Identities = 41/221 (18%), Positives = 70/221 (31%), Gaps = 46/221 (20%)
Query: 124 AAPYFTVE--PEFINAAEEETVTFECKAS---GLPEPEIHWVHNGK-------------P 165
A F+V I A E C E+ WV +
Sbjct: 1 ADLQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVE 60
Query: 166 ISQAPPNPRR--------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
Q+ P R G + I N+ SD+G Y C + Y V + V A
Sbjct: 61 DRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL 120
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKEL-----------TGGRYT 265
++ K + L CR G P+P++ W +N+ E G Y
Sbjct: 121 GSDLHVDVKGY---KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYA 177
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ + + + +C R+ L + + S+++ +
Sbjct: 178 V--AASVIMRG---SSGEGVSCTIRSSLLGLEKTASISIAD 213
Score = 70.5 bits (172), Expect = 8e-14
Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 9/133 (6%)
Query: 76 PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFI 135
D I+ G +L I +V SD G Y C +G K+ + + A + +
Sbjct: 74 LRDGITAGKA--ALRIHNVTASDSGKYLCYFQDGDFYEKAL---VELKVAALGSDLHVDV 128
Query: 136 NAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE---NLRKSD 191
++ + EC+++G P+P+I W +N P G + +R S
Sbjct: 129 KGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSS 188
Query: 192 TGNYGCNATNSLG 204
C +SL
Sbjct: 189 GEGVSCTIRSSLL 201
Score = 69.7 bits (170), Expect = 2e-13
Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 34/216 (15%)
Query: 223 EAPKDEYTVD-GKTVVLTCRV---FGAPKPEVNWIH------------------NQKELT 260
P G+ L C + A E+ W+ Q
Sbjct: 8 LGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPY 67
Query: 261 GGRYTILETG------DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
GR +IL G L+I +V +DSG+Y C+ ++ G + +K +D
Sbjct: 68 RGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLH 125
Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
D + C + + I W E V V S +
Sbjct: 126 VDVKGYKDGGIHLECRSTGW-YPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM 184
Query: 375 ---DSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
+C ++ L +E A++++ P +
Sbjct: 185 RGSSGEGVSCTIRSSLLGLEKTASISIADPFFRSAQ 220
Score = 42.4 bits (99), Expect = 2e-04
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 28/131 (21%)
Query: 298 GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLK-LSIVWLRGSEP------- 349
+V G+ A C+ S + + + W+ S
Sbjct: 1 ADLQFSV------LGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 54
Query: 350 ----IDFESEPRF----------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQAT 395
++ + + + +L + + DSG+Y C Q + +A
Sbjct: 55 DGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVE 114
Query: 396 LTVQVPLEAPS 406
L V
Sbjct: 115 LKVAALGSDLH 125
Score = 37.8 bits (87), Expect = 0.008
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 47 RNKKVELFCI-FGGTPLPQTIWSKD-GVPINPSDRISQGNYGKSLIIK---HVEFSDQGS 101
++ + L C G P PQ WS + G I + + + + S
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191
Query: 102 YTCEVSNGV-GEAKSYSIDLSVLAAPYF 128
+C + + + G K+ SI +A P+F
Sbjct: 192 VSCTIRSSLLGLEKTASI---SIADPFF 216
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 73.0 bits (178), Expect = 9e-15
Identities = 39/206 (18%), Positives = 57/206 (27%), Gaps = 23/206 (11%)
Query: 219 PEITEAPKDEYTVD-GKTVVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILETGDLKITD 276
P E P+ V G + LTCR+ A V W L G + L + +
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL-GAVQSDTGRSVLTVRN 65
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP- 335
+ + +G C T Q + L V + + G C A
Sbjct: 66 ASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQ-LTVSPAALVPGD-PEVACTAHKVTP 123
Query: 336 --SLKLSIVWLRGSEPI---------DFESEPRFVQSNDYSLTVT-----KSSELDSGQ- 378
LS L G + + E E D VT
Sbjct: 124 VDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPA 183
Query: 379 YTCRAQTELDFIEAQATLTVQVPLEA 404
C+A L +E + V +E
Sbjct: 184 LYCQATMRLPGLELSHRQAIPVLIEG 209
Score = 58.4 bits (140), Expect = 8e-10
Identities = 29/217 (13%), Positives = 53/217 (24%), Gaps = 30/217 (13%)
Query: 128 FTVEPE--FINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
VEP + A + C+ + + W + + G + +T+
Sbjct: 8 LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT----GRSVLTV 63
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG 244
N S G C + V + V A ++T +P + + C
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA---ALVPGDPEVACTAHK 120
Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+ N + L G ++ + V
Sbjct: 121 VTPVDPNAL----------SFSLLVGGQELEGAQALGPEVQEEEEEPQGD---EDVLFRV 167
Query: 305 KEHTHITDQPEDYEVEAGQSATFRCNAVSD-PSLKLS 340
E + C A P L+LS
Sbjct: 168 TERWRLPPLGTP------VPPALYCQATMRLPGLELS 198
Score = 47.6 bits (112), Expect = 4e-06
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 9/112 (8%)
Query: 51 VELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
+L C W + + L +++ S G+ C S G
Sbjct: 25 RQLTCRLACADRGASVQWRGLDTSLG---AVQSDTGRSVLTVRNASLSAAGTRVCVGSCG 81
Query: 110 VGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
+ ++ L V A P TV P + C A + + + +
Sbjct: 82 GRTFQH-TVQLLVYAFPNQLTVSPAAL---VPGDPEVACTAHKVTPVDPNAL 129
Score = 36.0 bits (82), Expect = 0.025
Identities = 22/162 (13%), Positives = 37/162 (22%), Gaps = 13/162 (8%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
+ V G S C + S+ W + + LTV
Sbjct: 10 VEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL----GAVQSDTGRSVLTVR 64
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKA-----VVSWN 424
+S +G C + L V + +
Sbjct: 65 NASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLT--VSPAALVPGDPEVACTAHKVT 122
Query: 425 PVSPQSLRGH-FRGYKVQTWTEKDGEGSIRELIVNKGESTTT 465
PV P +L G + + G E +G+
Sbjct: 123 PVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL 164
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 72.0 bits (176), Expect = 2e-14
Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNW--IHNQKELTGGRYTILETGDLKITDVAFADS 282
P+ + G ++ L C + G L ++ D+
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG----LRWLARQLVDIR-EPE 63
Query: 283 GEYTCFARNKLGTAQGSGSLTVK---EHTHITDQPEDYEVEAGQSATFRCNAV-SDPSLK 338
+ CF R T Q G + + + P G++ T C + P
Sbjct: 64 TQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPP--WQPVGENFTLSCRVPGAGPRAS 121
Query: 339 LSIVWLRGSEPI---DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
L++ LRG++ + F EP + + TV E ++CRA+ +L
Sbjct: 122 LTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173
Score = 59.3 bits (143), Expect = 3e-10
Identities = 21/176 (11%), Positives = 45/176 (25%), Gaps = 19/176 (10%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
++P ++ C + P PE + + R + ++R
Sbjct: 7 LQPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLRRNGTQRGLRWLA----RQLVDIR- 60
Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFG--- 244
C + + + E+ P + G+ L+CRV G
Sbjct: 61 EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELM--PLPPWQPVGENFTLSCRVPGAGP 118
Query: 245 APKPEVNWIHNQKELTGGRY------TILETGDLKITDVAFADSGEYTCFARNKLG 294
+ + +EL + + ++C A L
Sbjct: 119 RASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
Score = 39.7 bits (92), Expect = 0.001
Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 8/94 (8%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
QP VE G S C+ + + + +
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQ-------RGLRWLARQLVDIR 60
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
E Q C + ++A+ + +
Sbjct: 61 E-PETQPVCFFRCARRTLQARGLIRTFQRPDRVE 93
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 72.0 bits (176), Expect = 2e-14
Identities = 29/189 (15%), Positives = 63/189 (33%), Gaps = 29/189 (15%)
Query: 421 VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 480
+ WN P H Y ++ W K+ G +E + G + + P ++
Sbjct: 20 IQWNAPQP----SHISKYILR-WRPKNSVGRWKEATIP-GHLNSYTIKGLKPGVVYEGQL 73
Query: 481 LAFNGAYNGPPSEIISFVTPEGVPGTVQ---------------SLEAIPLGSSAFYLKWV 525
++ + + T P T S + +S+F + W
Sbjct: 74 ISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSW- 132
Query: 526 KPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY 585
+ + G++++Y+ + E T TS + L P KY +++
Sbjct: 133 --VSASDTVSGFRVEYELSEEGD-----EPQYLDLPSTATSVNIPDLLPGRKYIVNVYQI 185
Query: 586 TKAGDGAES 594
++ G+ +
Sbjct: 186 SEDGEQSLI 194
Score = 58.5 bits (141), Expect = 6e-10
Identities = 22/191 (11%), Positives = 54/191 (28%), Gaps = 32/191 (16%)
Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
+ P ++ ++W P+ + Y ++++ S
Sbjct: 6 VFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVG-----RWKEATIPGHLNSY 58
Query: 568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYLF-------------------YVPFKNPDNV 608
+ GL+P Y L + G +++ F +
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 609 EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQ 668
T ++ V+SW + +R+ + G+ Q L + + + +
Sbjct: 119 SVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGD-EPQYLDLPSTATSVNIPDL 172
Query: 669 PTFQPYEIKVV 679
+ Y + V
Sbjct: 173 LPGRKYIVNVY 183
Score = 42.0 bits (98), Expect = 2e-04
Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 363 DYSLTVTKSSELDSGQYT--CRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK-- 418
Y + + + T T T+T + +P T V +
Sbjct: 68 VYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASS 127
Query: 419 AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 478
VVSW S G++V + + + L + +T+ + +P K
Sbjct: 128 FVVSWVSAS-----DTVSGFRV-EYELSEEGDEPQYLDLP-STATSVNIPDLLPGRKYIV 180
Query: 479 RVLAFNGAYNGPPSEIISFVT 499
V + S T
Sbjct: 181 NVYQISEDGEQSLILSTSQTT 201
Score = 30.8 bits (69), Expect = 1.3
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
W K+ G +E + G + + P ++++ + + T
Sbjct: 36 RWRPKNSVGRWKEATIP-GHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTST 94
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 71.9 bits (176), Expect = 2e-14
Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 26/198 (13%)
Query: 135 INAAEEETVTFECK----ASGLPEPEIHWVHNGKPI--------SQAPPNPRRKVGPNR- 181
+ +E T C L + I+W K + + P R +
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 182 ---ITIENLRKSDTGNYGCNATNSLGYVYKDVY---VNVLAHAPEITEAPKDEYTVDGKT 235
I I LR SD G Y C +K + V + A T + D
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123
Query: 236 VVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILETGDLKITDVA------FADSGEYTCF 288
+ C G P+P ++W+ N +EL T+ + + ++ V+ + + C
Sbjct: 124 RRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCL 183
Query: 289 ARNKLGTAQGSGSLTVKE 306
+ + + +
Sbjct: 184 IKYGHLRVNQTFNWNTAK 201
Score = 68.1 bits (166), Expect = 4e-13
Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 28/186 (15%)
Query: 44 VALRNKKVELFCIFGGTPLPQT----IWSKDGVPI---------------NPSDRISQGN 84
+ L C + W K+ + N + N
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 85 YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL---AAPYFTVEPEFINAAEEE 141
S++I + SD+G+Y C V +A V A + T
Sbjct: 65 L--SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
Query: 142 TVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE---NLRKSDTGNYGC 197
C SG PEP + W+ NG+ ++ + + + + ++ C
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMC 182
Query: 198 NATNSL 203
Sbjct: 183 LIKYGH 188
Score = 53.8 bits (129), Expect = 3e-08
Identities = 23/195 (11%), Positives = 50/195 (25%), Gaps = 29/195 (14%)
Query: 233 GKTVVLTCR----VFGAPKPEVNWIHNQKELTG-------------GRYTILETGD--LK 273
+ L+C V + + W +K + R T + +
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68
Query: 274 ITDVAFADSGEYTCFARNKLGT---AQGSGSLTVKEHTHITD-QPEDYEVEAGQSATFRC 329
I + +D G Y C + +T+ D+E+ C
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIIC 128
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL---DSGQYTCRAQTE 386
+ S + + WL E ++ + V+ + + + C +
Sbjct: 129 ST-SGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187
Query: 387 LDFIEAQATLTVQVP 401
+ T
Sbjct: 188 H--LRVNQTFNWNTA 200
Score = 43.8 bits (103), Expect = 7e-05
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 318 EVEAGQSATFRC--NAVSDPSLKLSIVWLRGSEPI------------DFESEPRFVQSND 363
E + AT C N + + I W + + + ++++ F +N+
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 364 YSLTVTKSSELDSGQYTCRAQTELD---FIEAQATLTVQVPLEAPS 406
S+ + D G Y C E A +T+ V + P+
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT 110
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 68.6 bits (167), Expect = 4e-14
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNW--------------IHNQKELTGGRYTILE 268
G+ +VL C +++ ++ + G
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
L I V +D G YTC A + L T + S + V E +
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 115
Score = 68.2 bits (166), Expect = 6e-14
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 132 PEFINAAEEETVTFECKASGLPEP--EIHWVHNGKPISQA---------PPNPRRKVGPN 180
I + E + C A + +W + K +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT 222
+TI+ + +SD G Y C A++ L +V V P +
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVA 115
Score = 60.5 bits (146), Expect = 3e-11
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 307 HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPR--------- 357
+ + E+ G+ C A ++ ++ + W S +
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 358 FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
++ +LT+ + D G YTC A + L + + V
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 54.0 bits (129), Expect = 5e-09
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 13/100 (13%)
Query: 45 ALRNKKVELFCIFGGTPLP--QTIWSKDGVPINPSDRIS----------QGNYGKSLIIK 92
+K+ L C W ++ + +L I
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 93 HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
V SDQG YTC S+G+ K+ S + V P+
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGS 118
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 67.4 bits (165), Expect = 5e-14
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 218 APEITEAPKDEYTV---DGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD-- 271
P +P+D+ ++ + VVLTC + W + +++ + G
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
L + + DSGE+ C +TV++
Sbjct: 66 RLILPEAKVQDSGEFECRT----EGVSAFFGVTVQD 97
Score = 63.2 bits (154), Expect = 2e-12
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVT 369
+ C +S W + + + E V D + L +
Sbjct: 16 DKVSLTFTTSERVVLTCE-LSRV--DFPATWYKDGQKV--EESELLVVKMDGRKHRLILP 70
Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
++ DSG++ CR + A +TVQ P PS+
Sbjct: 71 EAKVQDSGEFECRTEGV----SAFFGVTVQDP-SGPSS 103
Score = 60.9 bits (148), Expect = 1e-11
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 121 SVLAAPYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV 177
S + P + P+ + E V C+ S + W +G+ + + V
Sbjct: 3 SGSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKV---EESELLVV 58
Query: 178 ----GPNRITIENLRKSDTGNYGCNATNS 202
+R+ + + D+G + C
Sbjct: 59 KMDGRKHRLILPEAKVQDSGEFECRTEGV 87
Score = 60.1 bits (146), Expect = 2e-11
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSY 102
+++V L C W KDG + S+ + LI+ + D G +
Sbjct: 22 FTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEF 80
Query: 103 TCEVSNGVGEAK 114
C
Sbjct: 81 ECRTEGVSAFFG 92
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 69.8 bits (170), Expect = 7e-14
Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 9/184 (4%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
PK ++ + C +PEV + + +
Sbjct: 9 PKKLAVEPKGSLEVNCST-TCNQPEVGGLETSL---NKILLDEQAQWKHYLVSNISHDTV 64
Query: 285 YTCFARNKLGTAQGSGSLTV-KEHTHITDQPEDYEVEAGQSATFRCNAVSD-PSLKLSIV 342
C + +++V + + + V G+S T C + P L++
Sbjct: 65 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 343 WLRGSEPID---FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
RG+E + F Q + T E ++C A +L
Sbjct: 125 LFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 184
Query: 400 VPLE 403
P
Sbjct: 185 APKM 188
Score = 55.5 bits (133), Expect = 6e-09
Identities = 23/177 (12%), Positives = 47/177 (26%), Gaps = 22/177 (12%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE---IHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
V P+ + + ++ C + +PE + N + +
Sbjct: 7 VRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLETSLNKILLDE---------QAQWKHYLV 56
Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-- 244
S C+ T S + V+V ++ + GK+ + CRV
Sbjct: 57 SNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVE 116
Query: 245 -APKPEVNWIHNQKELTGGRYTILETGDLKITDVAF-----ADSG-EYTCFARNKLG 294
+ + L + + T D ++C A L
Sbjct: 117 PLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM 173
Score = 35.5 bits (81), Expect = 0.033
Identities = 10/94 (10%), Positives = 20/94 (21%), Gaps = 9/94 (9%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
+P+ VE S C+ + + +D S+
Sbjct: 8 RPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLD---------EQAQWKHYLVSN 58
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
C + ++V P
Sbjct: 59 ISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVI 92
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 73.8 bits (180), Expect = 7e-14
Identities = 41/270 (15%), Positives = 75/270 (27%), Gaps = 19/270 (7%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
P+D V AG + T C + + LR + ++ +
Sbjct: 210 PQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLY---------GQTVAIHILNIPV 260
Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG 433
++ T+ D + P + P + D K+ + SWNP L G
Sbjct: 261 SENSGTNIIFITDDDV--YGTVVFAGYPPDVPQKLSCE-THDLKEIICSWNPGRITGLVG 317
Query: 434 HFR-GYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS 492
Y + R + E+ V + + N G
Sbjct: 318 PRNTEYTLFESISGKSAVFHRIEGLT-NETYRLGVQMHPGQEIHNFTLTGRNPL--GQAQ 374
Query: 493 EIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGP 551
+ E V SL+ + S+ W P + + +I+ K
Sbjct: 375 SAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKK--E 432
Query: 552 LLERLPYISDPTTTSAKLAGLEPSTKYRIH 581
+ ++ +T + L P T Y
Sbjct: 433 VRNATIRGAEDSTYHVAVDKLNPYTAYTFR 462
Score = 46.5 bits (109), Expect = 3e-05
Identities = 21/187 (11%), Positives = 44/187 (23%), Gaps = 6/187 (3%)
Query: 496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
+ V P Q L W P + G++ +Y + +
Sbjct: 279 TVVFAGYPPDVPQKLSCETHDLKEIICSW-NPGRITGLVGPRNTEYTLFESISGKSAVFH 337
Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY----VPFKNPDNVEGR 611
T + + L G G A+S + V +P +++ +
Sbjct: 338 RIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQ-AQSAVVINVTERVAPHDPTSLKVK 396
Query: 612 GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTF 671
+ SW + I + + + +
Sbjct: 397 DINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPY 456
Query: 672 QPYEIKV 678
Y +V
Sbjct: 457 TAYTFRV 463
Score = 43.4 bits (101), Expect = 2e-04
Identities = 41/289 (14%), Positives = 80/289 (27%), Gaps = 24/289 (8%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
P+D+ + G + + C + + + L + L I + +
Sbjct: 210 PQDKVVLAGSNMTICC-MSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNI 268
Query: 285 YTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVSDPSLKLS-- 340
+ GT +G + D P+ E C N L
Sbjct: 269 IFITDDDVYGTVVFAG--------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRN 320
Query: 341 ---IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL--DFIEAQAT 395
++ S + + Y L V + +T + L
Sbjct: 321 TEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVIN 380
Query: 396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
+T +V P++ ++ I++ SW P + +++ +
Sbjct: 381 VTERVAPHDPTSLK-VKDINSTVVTFSWYL--PGNFTKINLLCQIEICKANSKKEVRNAT 437
Query: 456 IVNKGESTTT-EVDKFVPASKNFARVLAF--NGAYNGPPSEIISFVTPE 501
I +ST VDK P + RV S+ +T E
Sbjct: 438 IRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDEKRHLTTE 486
Score = 38.8 bits (89), Expect = 0.007
Identities = 39/354 (11%), Positives = 91/354 (25%), Gaps = 38/354 (10%)
Query: 345 RGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ----V 400
D + RF + T K L G + F +++ TL + +
Sbjct: 31 SPGTVKDICIKDRFHSCHPLETTNVKIPALSPGDHEVTINYLNGF-QSKFTLNEKDVSLI 89
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE----GSIRELI 456
P E P L ++ WN ++++ E + ++
Sbjct: 90 P-ETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTML 148
Query: 457 VNKGESTTTEVDKFVPAS--KNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEA-- 512
K +P + + + + + S +P +++ E
Sbjct: 149 SGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNV 208
Query: 513 ------IPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS 566
+ GS+ + +G + + T +
Sbjct: 209 FPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHL----------------YGQTVA 252
Query: 567 AKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMP 626
+ + S ++ T + Y P P + ++ SW
Sbjct: 253 IHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDV-PQKLSCETHDLKEIICSWNPGR 311
Query: 627 EIEHNAPHF-KYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV 679
P +Y +F +++ + L L + P + + +
Sbjct: 312 ITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLT 365
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 67.5 bits (165), Expect = 8e-14
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 499 TPEGVPGTV-QSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
+ P + + LKW + N + G+ I Y+ +
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDS---DY 59
Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ + ++ L+P T Y I + + + G+ S
Sbjct: 60 KKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFS 98
Score = 63.7 bits (155), Expect = 1e-12
Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
P+ P ++ ++ W + + G+ + S + +
Sbjct: 6 SGPVAGPYITF-TDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV 64
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+G+ + P + ++ FN S ++ T
Sbjct: 65 EGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSG 110
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/141 (11%), Positives = 36/141 (25%), Gaps = 40/141 (28%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
P P +++ W +P +N P + I++R ++
Sbjct: 7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDND---------- 56
Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
Y+ +V +G+ + P + ++
Sbjct: 57 ------------SDYKKDMV------------------EGDRYWHSISHLQPETSYDIKM 86
Query: 720 LAFNGAYNGPPSEIISFVTPE 740
FN S ++ T
Sbjct: 87 QCFNEGGESEFSNVMICETKA 107
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 66.3 bits (162), Expect = 2e-13
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ PG ++ + L+W P++ G L+GY+++Y + +
Sbjct: 3 SGSSGPGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTI------ 55
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNP 605
+ GL T Y LA +AG G E + P
Sbjct: 56 DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLS 102
Score = 38.9 bits (91), Expect = 6e-04
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 9/112 (8%)
Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR 453
+ P P+ +I A++ W+P P+ L G GY++Q + D
Sbjct: 1 GSSGSSGP-GRPTM--MISTTAMNTALLQWHP--PKELPGELLGYRLQ-YCRADEARPNT 54
Query: 454 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
I + V + R+ A N A G E TPE + G
Sbjct: 55 --IDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFE-KEIRTPEDLSG 103
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 66.9 bits (163), Expect = 2e-13
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 18/115 (15%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF------ESEPRF----V 359
+T+ E VE GQ+ T +C + L WL S F ++
Sbjct: 4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQ--WLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP-----LEAPSNFT 409
+N S+TV + D G Y C ++ + + V PS++
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRYPSHWR 115
Score = 61.5 bits (149), Expect = 1e-11
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 14/110 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI---------HNQKELTGGRYTILE- 268
+T + +G+T+ L C + W+ + L +Y +L
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 269 ---TGDLKITDVAFADSGEYTCFA-RNKLGTAQGSGSLTVKEHTHITDQP 314
+ + +V D G Y C + + T + + P
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYP 111
Score = 56.5 bits (136), Expect = 8e-10
Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI-----SQAPPNPRRKVGPN 180
T E I E +T+T +C S + W+ N + ++ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 181 -----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH-APEITEAPK 226
IT+ N+ D G Y C S K+V V VLA E P
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYPS 112
Score = 49.2 bits (117), Expect = 3e-07
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 51 VELFCIFGGTPLPQTIWSK--------DGVPINPSDRISQGNYGK---SLIIKHVEFSDQ 99
+ L C+ W + P+ + + ++ S+ + +V D+
Sbjct: 19 LTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDE 78
Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAP 126
G Y C + + + + VLA
Sbjct: 79 GVYKCLHYS--DSVSTKEVKVIVLATM 103
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 69.5 bits (169), Expect = 2e-13
Identities = 33/222 (14%), Positives = 59/222 (26%), Gaps = 48/222 (21%)
Query: 132 PEFINAAEEETVTFECKASGLPE---------------PEIHWVHNGKPISQAPPNPRRK 176
P + ++V +C +G + P + Q + R
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 177 VGPN-------RITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLA--HAPEIT-EAP 225
P R+ + + D +Y C + G +NV A A E++
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKG 126
Query: 226 KDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELT-------------------GGRYT 265
D + TC P P++ W N + L G +
Sbjct: 127 TLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLS 186
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
+ T L + + C A L + + H
Sbjct: 187 LTST--LYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFH 226
Score = 68.3 bits (166), Expect = 5e-13
Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 42/201 (20%)
Query: 45 ALRNKKVELFCIF----------------GGTPLPQTIWSKDGVPINPSDRISQG----- 83
+R K V L C G G + + ++G
Sbjct: 12 VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPY 71
Query: 84 --NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV----EPEFINA 137
+ L++ + D+ Y C V G + L+V A P T +
Sbjct: 72 QLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVM 131
Query: 138 AEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--------------I 182
+ C + G P P+I W NG+ + +R +
Sbjct: 132 EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTL 191
Query: 183 TIENLRKSDTGNYGCNATNSL 203
+ + ++ C A SL
Sbjct: 192 YLRLRKDDRDASFHCAAHYSL 212
Score = 65.6 bits (159), Expect = 4e-12
Identities = 37/216 (17%), Positives = 59/216 (27%), Gaps = 47/216 (21%)
Query: 233 GKTVVLTCRVFGAPKP-EVNWIHNQKELT------------------------GGRYTIL 267
GK+V+L C G + W + Y +
Sbjct: 15 GKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD 74
Query: 268 ETGDLKITDVAFADSGEYTCFAR-NKLGTAQGSGSLTVK---EHTHITDQPEDYEV-EAG 322
G L + + D +Y C R GTA+ + L V E T ++ V E
Sbjct: 75 SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDS 134
Query: 323 QSATFRCNAV-SDPSLKLSIVWLRGSEPIDF----------ESEPRFVQSNDYS----LT 367
CN+ +P+ I W R + ++ S S S L
Sbjct: 135 AQEIATCNSRNGNPA--PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLY 192
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
+ + + C A L + L
Sbjct: 193 LRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLT 228
Score = 50.6 bits (120), Expect = 5e-07
Identities = 27/181 (14%), Positives = 45/181 (24%), Gaps = 32/181 (17%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR---------------------GSEPID 351
P EV G+S C + W +
Sbjct: 6 VPPLVEVMRGKSVILDCTPTGTHDH-YMLEWFLTDRSGARPRLASAEMQGSELQVTMHDT 64
Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI-EAQATLTVQVPLEAPSNFTL 410
P + + L + ++ D Y C + EA A L V EA
Sbjct: 65 RGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEAT----- 119
Query: 411 IQVIDAKKAVVSWNPVSPQSLRGHFRGYK---VQTWTEKDGEGSIRELIVNKGESTTTEV 467
+V K + + + + R TW + + +G T+ V
Sbjct: 120 -EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTV 178
Query: 468 D 468
Sbjct: 179 R 179
Score = 40.6 bits (94), Expect = 8e-04
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 21/102 (20%)
Query: 43 EVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKS------------- 88
V + + C G P P+ W ++G + ++ Y S
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188
Query: 89 --LIIKHVEFSDQGSYTCEVSNGVGEAK-----SYSIDLSVL 123
L ++ + S+ C + E + S + L++
Sbjct: 189 STLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 68.2 bits (166), Expect = 3e-13
Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 11/172 (6%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF 279
+ + +P G +V++TC + + L +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGI---ETPLPKKELLLPGNNRKVYELSNV 57
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVK---EHTHITDQPEDYEVEAGQSATFRCNAVS-DP 335
+ + C++ G + LTV E + P V G+ T RC P
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV--GKQLTLRCQVEGGAP 115
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
+L++V LRG + + + EP + + + TV + Q++CR + +L
Sbjct: 116 RAQLTVVLLRGEKEL--KREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDL 165
Score = 47.4 bits (112), Expect = 3e-06
Identities = 29/171 (16%), Positives = 48/171 (28%), Gaps = 14/171 (8%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
V P + +V C S + P+ + G NR E
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIET---PLPKKELLLP---GNNRKVYELSNV 57
Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFG--- 244
+ C + G ++ V E+ P + GK + L C+V G
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV--GKQLTLRCQVEGGAP 115
Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSG-EYTCFARNKLG 294
+ V + +KEL V G +++C L
Sbjct: 116 RAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166
Score = 32.0 bits (72), Expect = 0.42
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
P + G S C+ D L I + + + + S+
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKEL--------LLPGNNRKVYELSN 56
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
+ Q C + A+ LTV E
Sbjct: 57 VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVE 90
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 68.0 bits (165), Expect = 3e-13
Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 44/195 (22%)
Query: 223 EAPKDEYTVD--GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA 280
+A EY V G +V LTC + + W N +EL L D +
Sbjct: 2 DAENIEYKVSISGTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVE---- 55
Query: 281 DSGEYTCFARN-----------KLGTAQGSGSLTVKEHTHITDQP--------------E 315
DSG Y C+ ++G+A + K+ D +
Sbjct: 56 DSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQ 115
Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
S C I WL+ I + + + + +++
Sbjct: 116 VDGSRGDGSVLLTCGLTDKT-----IKWLKDGSII------SPLNATKNTWNLGNNAKDP 164
Query: 376 SGQYTCRAQTELDFI 390
G Y C+ E
Sbjct: 165 RGTYQCQGAKETSNP 179
Score = 63.7 bits (154), Expect = 9e-12
Identities = 34/187 (18%), Positives = 52/187 (27%), Gaps = 43/187 (22%)
Query: 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHV-EFSDQGS 101
+V++ VEL C W K+G + + K L+++ E D G
Sbjct: 9 KVSISGTSVELTCPL--DSDENLKWEKNGQEL-------PQKHDKHLVLQDFSEVEDSGY 59
Query: 102 YTCEVSNGVGEAKSY-------SIDLSVLAAPYFTVEPEFINAA---------------- 138
Y C Y + D AA + +
Sbjct: 60 YVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGS 119
Query: 139 -EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
+ +V C + I W+ +G IS P K N + N K G Y C
Sbjct: 120 RGDGSVLLTCGLTD---KTIKWLKDGSIIS---PLNATK---NTWNLGNNAKDPRGTYQC 170
Query: 198 NATNSLG 204
Sbjct: 171 QGAKETS 177
Score = 60.7 bits (146), Expect = 9e-11
Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 41/180 (22%)
Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL-RKSDTGNYGCNA 199
+V C + + W NG+ + P + + +++ D+G Y C
Sbjct: 15 TSVELTCPLD--SDENLKWEKNGQEL---PQKHDK-----HLVLQDFSEVEDSGYYVCYT 64
Query: 200 TNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD------------------------GKT 235
S Y + V + +A K + +
Sbjct: 65 PASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS 124
Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
V+LTC G + W+ + ++ T + + A G Y C +
Sbjct: 125 VLLTC---GLTDKTIKWLKDGSIISPLNAT---KNTWNLGNNAKDPRGTYQCQGAKETSN 178
Score = 43.7 bits (102), Expect = 6e-05
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 312 DQPEDYEVE-AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTK 370
+ +Y+V +G S C SD + + W + + + Q +D L +
Sbjct: 3 AENIEYKVSISGTSVELTCPLDSDEN----LKWEKNGQELP--------QKHDKHLVLQD 50
Query: 371 SSEL-DSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQ 429
SE+ DSG Y C V +A + A + +
Sbjct: 51 FSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKA 110
Query: 430 SLR 432
Sbjct: 111 KNL 113
Score = 38.3 bits (88), Expect = 0.003
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
V L C + W KDG I+P + + + + +G+Y C+ +
Sbjct: 124 SVLLTCGLTDKTI---KWLKDGSIISPLNA-----TKNTWNLGNNAKDPRGTYQCQGAKE 175
Query: 110 VGE 112
Sbjct: 176 TSN 178
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 64.8 bits (158), Expect = 6e-13
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 499 TPEGVPGTVQSLEAIPL--GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
+ P ++L+ W P +G++ Y ++Y
Sbjct: 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQ---- 58
Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ ++ L +T Y + +A T G G S
Sbjct: 59 ----RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWS 92
Score = 54.0 bits (130), Expect = 4e-09
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
P +AP N L +A+ + W P P G R Y V+ ++ +
Sbjct: 6 SGP-DAPRNLQLSLPREAEGVIVGHWAP--PIHTHGLIREYIVE-YSRSGSK----MWAS 57
Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+ S TE+ + + RV A G S+ S T +G
Sbjct: 58 QRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
Score = 35.1 bits (81), Expect = 0.015
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 692 RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
+ + S TE+ + + RV A G S+ S T +G
Sbjct: 53 KMWASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 64.5 bits (157), Expect = 9e-13
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS 566
V+ + L + + W ++ + GY++ Y+ G + + L PT S
Sbjct: 19 VRLHNPVVLTPTTVQVTW-TVDRQPQFIQGYRVMYRQTSGLQATSSWQNLD-AKVPTERS 76
Query: 567 AKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF 598
A L L+ Y I + Y G +S+
Sbjct: 77 AVLVNLKKGVTYEIKVRPYFNEFQGMDSESKT 108
Score = 42.2 bits (99), Expect = 6e-05
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 12/117 (10%)
Query: 388 DFIEAQATLT-VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKV--QTWT 444
+ Q L V V L P V+ V+W +GY+V + +
Sbjct: 6 SGRQVQKELGDVLVRLHNP------VVLTPTTVQVTWTVDRQPQFI---QGYRVMYRQTS 56
Query: 445 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
S + L + + +V + + G SE + T E
Sbjct: 57 GLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
Score = 31.4 bits (71), Expect = 0.34
Identities = 8/57 (14%), Positives = 15/57 (26%)
Query: 684 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
S + L + + +V + + G SE + T E
Sbjct: 57 GLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 64.4 bits (156), Expect = 2e-12
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 33/121 (27%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL----------------- 259
H P V G + L + G P P V W +
Sbjct: 17 HLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGD 76
Query: 260 -------------TGGRYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLT 303
T GR + T D + D G YT +N +G Q + ++
Sbjct: 77 SDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Query: 304 V 304
V
Sbjct: 137 V 137
Score = 61.7 bits (149), Expect = 1e-11
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 30/114 (26%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR---------- 181
P+ I + + SG P P + W ++AP P +
Sbjct: 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 84
Query: 182 --------------------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
T+E K D G Y N +G ++ V V+
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 58.2 bits (140), Expect = 3e-10
Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 32/106 (30%)
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSD------------------------------ 78
K+ L G P P IW K N +
Sbjct: 34 NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGR 93
Query: 79 -RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
R+ ++ E D+G YT V N VGE ++ + V+
Sbjct: 94 VRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI 138
Score = 48.2 bits (114), Expect = 6e-07
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 34/117 (29%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID---------------------- 351
P+ V AG DP +++W + +
Sbjct: 25 PDTIVVVAGNKLRLDVPISGDP--APTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 82
Query: 352 -----FESEPRF---VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
E+E R + TV + + D G YT + + E Q LTV+V
Sbjct: 83 DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG--EDQVNLTVKV 137
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 66.0 bits (160), Expect = 3e-12
Identities = 37/214 (17%), Positives = 68/214 (31%), Gaps = 41/214 (19%)
Query: 223 EAPKDEYTVDGKTVVLTCRV-------FGAPKPEVNWIHNQK------------------ 257
+ K +G V++ C + +P V W + +
Sbjct: 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVK 64
Query: 258 ELTGGRYTIL-----ETGDLKITDVAFADSGEYTCFARN----KLGTAQGSGSLTVKEHT 308
T GR+ +L + L I D D+G Y K Q +L V
Sbjct: 65 PETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI 124
Query: 309 HITDQPEDYEVEAGQSATFRC--NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
D +E+G+ C + L+ W + +P +S++ L
Sbjct: 125 EKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS---PLDPETTRSSE--L 179
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
T+T E TC+ + + + + T+ + V
Sbjct: 180 TLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 58.7 bits (141), Expect = 6e-10
Identities = 29/168 (17%), Positives = 41/168 (24%), Gaps = 17/168 (10%)
Query: 56 IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115
+ P + G + + N SL I D GSY V G S
Sbjct: 54 VATNNPDRRVKPETQG-RFRLLGDVQKKNC--SLSIGDARMEDTGSYFFRVERGRDVKYS 110
Query: 116 Y---SIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS----GLPEPEIHWVHNGKPISQ 168
Y ++L V A C P W N
Sbjct: 111 YQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNAL---- 166
Query: 169 APPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY--KDVYVNV 214
P + +T+ + N C V + V +NV
Sbjct: 167 -SPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 39.0 bits (90), Expect = 0.003
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 29/124 (23%)
Query: 312 DQPEDYEVEAGQSATFRCN-----AVSDPSLKLSIVWLRGSEPIDF-------------- 352
+ V+ G C+ S L + W R E +
Sbjct: 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVK 64
Query: 353 -ESEPRF-----VQSNDYSLTVTKSSELDSGQYTCRAQTELD----FIEAQATLTVQVPL 402
E++ RF VQ + SL++ + D+G Y R + D + + + L V +
Sbjct: 65 PETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI 124
Query: 403 EAPS 406
E P
Sbjct: 125 EKPD 128
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 61.3 bits (149), Expect = 8e-12
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ VP LE + ++ + W + Y+I Y G P+ E +
Sbjct: 6 SVSSVP---TKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGD--SPVQE---F 57
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
++A ++GL+P Y I + Y G E
Sbjct: 58 TVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEP 93
Score = 48.2 bits (115), Expect = 3e-07
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ P+ ++ +SW+ S + + Y++ T+ E G+ ++E
Sbjct: 3 SGSSVSSVPTKLEVVDA-TPTSLKISWDA--YYSSWQNVKYYRI-TYGETGGDSPVQEFT 58
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
V G +T + P V A++ + G +
Sbjct: 59 VP-GYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100
Score = 32.8 bits (75), Expect = 0.073
Identities = 23/134 (17%), Positives = 36/134 (26%), Gaps = 44/134 (32%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P +E +TP +L ISW A YRI
Sbjct: 11 PTKLEVVDATPTSLKISWDAYYS--SWQNVKYYRI------------------------- 43
Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
T+ E G+ ++E V G +T + P V A++
Sbjct: 44 ----------------TYGETGGDSPVQEFTVP-GYYSTATISGLKPGVDYTITVYAYDT 86
Query: 725 AYNGPPSEIISFVT 738
+ G +
Sbjct: 87 FFPGYEPNSPISIN 100
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 65.1 bits (158), Expect = 2e-11
Identities = 40/251 (15%), Positives = 81/251 (32%), Gaps = 27/251 (10%)
Query: 42 KEVALRNKKVELFC-IFGGTPLPQTI-WSKDGVPIN-----PSDRISQGNYGKS--LIIK 92
++L C + G TP I W +DG ++ S L +
Sbjct: 18 DGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLS 77
Query: 93 HVEFSDQGSYTCEVS---NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA 149
+ +YTC+V+ + ++ D + + P + ++ T C
Sbjct: 78 QKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLV 137
Query: 150 SGLPEPE----IHW-VHNGKPISQAPPNPRRKVGPN-----RITIENLRKSDTGNYGCNA 199
L + + W +GKP++ + ++ + + + Y C
Sbjct: 138 VDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRV 197
Query: 200 TNSLGYVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIH 254
T+ + APE+ E+ L C + P+ V W+H
Sbjct: 198 THPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLH 257
Query: 255 NQKELTGGRYT 265
N+ +L R++
Sbjct: 258 NEVQLPDARHS 268
Score = 62.0 bits (150), Expect = 2e-10
Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 24/214 (11%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYTILETGD------- 271
I ++ D T+ L C V G P ++ W+ + + + T T +
Sbjct: 12 ILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQ 71
Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT----HITDQPEDYEVEAGQSA 325
L ++ + YTC + T + S + +P +++ +S
Sbjct: 72 SELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSP 131
Query: 326 TFRCNAV--SDPSLKLSIVWLR-GSEPIDFESEPRFVQSNDYS-----LTVTKSSELDSG 377
T C V + + + W R +P++ + Q N L V ++
Sbjct: 132 TITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGE 191
Query: 378 QYTCRAQ-TELDFIEAQATLTVQVPLEAPSNFTL 410
Y CR L ++T P AP +
Sbjct: 192 TYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAF 225
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 66.4 bits (162), Expect = 2e-11
Identities = 72/395 (18%), Positives = 120/395 (30%), Gaps = 46/395 (11%)
Query: 59 GTPLPQTIWSKDGVPINPSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNGVGEAKSY 116
G I+ P R S G S L I +E D+ Y C N + +
Sbjct: 40 GMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVF 99
Query: 117 SIDLSV------LAAPYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQ 168
V A P T+ P + T C S P + W +G P+
Sbjct: 100 GTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA 159
Query: 169 APPNPRRKVGPN-------RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HA 218
+ N +++ + +Y C T+ V K V +
Sbjct: 160 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKG 219
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT---ILETGD-- 271
P + + G T L C V P+P V+W N LT G +T +L++
Sbjct: 220 PSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW--NSGALTSGVHTFPAVLQSSGLY 277
Query: 272 -----LKITDVAFADSGEYTCFARNKLGT--AQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
+ + + + Y C +K + + ++
Sbjct: 278 SLSSVVTVPSSSL-GTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRT 336
Query: 325 ATFRCNA--VSDPSLKLSIVWLR-GSEPIDFESEPRFVQSNDYS-----LTVTKSSELDS 376
C VS ++ W G + + +++PR Q N LTV + LD
Sbjct: 337 PEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDG 396
Query: 377 GQYTCRAQ-TELDFIEAQATLTVQVPLEAPSNFTL 410
+Y C+ L + + P +TL
Sbjct: 397 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL 431
Score = 61.8 bits (150), Expect = 5e-10
Identities = 68/387 (17%), Positives = 118/387 (30%), Gaps = 61/387 (15%)
Query: 48 NKKVELFC-IFGGTPLPQTI-WSKDGVPIN------PSDRISQGNYGKS--LIIKHVEFS 97
K L C I P T+ W DG P+ + S Y S L + ++
Sbjct: 129 ANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWK 188
Query: 98 DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE-FINAAEEE-----TVTFECKASG 151
SY+C+V++ E + ++ T P F A + T C
Sbjct: 189 SHRSYSCQVTH---EGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD 245
Query: 152 L-PEP-EIHWVHNGKPISQAPPNPRRKVGPN---------RITIENLRKSDTGNYGCNAT 200
P+P + W N ++ + + + +L + T Y CN
Sbjct: 246 YFPQPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQT--YICNVN 300
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPK-DEYTVDGKTVVLTCRVFGAPKPE----VNWIHN 255
+ D V L+ PK + + +T +TC V + NW +
Sbjct: 301 HKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVD 360
Query: 256 QKELTGGRYTILE---------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
++ + E L + + D EY C NK A +++ +
Sbjct: 361 GVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK 420
Query: 307 HTHITDQ----PEDYEVEAGQSATFRCNAVSDPSLK-LSIVWLRGSEPIDFE--SEPRFV 359
Q P E + C V +++ W +P + + P
Sbjct: 421 GQPREPQVYTLPPSREEMTKNQVSLTC-LVKGFYPSDIAVEWESNGQPENNYKTTPPVLD 479
Query: 360 QSNDYS----LTVTKSSELDSGQYTCR 382
+ LTV KS ++C
Sbjct: 480 SDGSFFLYSKLTVDKSRWQQGNVFSCS 506
Score = 49.8 bits (119), Expect = 2e-06
Identities = 57/379 (15%), Positives = 108/379 (28%), Gaps = 69/379 (18%)
Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG----------PNRITIE----- 185
+ VT C + ++W Q P + + P R +
Sbjct: 16 QRVTISCTGTSSGSITVNWYQ------QLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTS 69
Query: 186 ------NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPK------DEYTVDG 233
L D +Y C + NS Y + + P +
Sbjct: 70 ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQA 129
Query: 234 KTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT---ILETGD-------LKITDVAFAD 281
L C + P V W + + G T ++ + L +T +
Sbjct: 130 NKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKS 189
Query: 282 SGEYTCFARNKLGTAQGSGSLTV----KEHTHITDQPEDYEVEAGQSATFRCNAVSD--P 335
Y+C ++ T + + + T + + + +G +A C V D P
Sbjct: 190 HRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGC-LVKDYFP 248
Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSND-YS----LTVTKSSELDSGQYTCR----AQTE 386
+++ W G+ + P +QS+ YS +TV SS L + Y C
Sbjct: 249 Q-PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVP-SSSLGTQTYICNVNHKPSNT 306
Query: 387 LDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEK 446
+ V L P + + + VS + + F W
Sbjct: 307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKF------NWYVD 360
Query: 447 DGEGSIRELIVNKGESTTT 465
+ + + + +T
Sbjct: 361 GVQVHNAKTKPREQQYNST 379
Score = 34.4 bits (79), Expect = 0.16
Identities = 43/219 (19%), Positives = 70/219 (31%), Gaps = 49/219 (22%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTG----------------GRYTILETGD---LK 273
G+ V ++C + VNW Q R++ ++G L
Sbjct: 15 GQRVTISCTGTSSGSITVNWYQ-QLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLA 73
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPED------------YEVEA 321
I+ + D +Y C A S T +T + E
Sbjct: 74 ISGLEAEDESDYYC-AS----WNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQ 128
Query: 322 GQSATFRCNAVSD--PSLKLSIVWLRGSEPI--DFESEPRFVQSND-YS----LTVTKSS 372
AT C +SD P +++ W P+ E+ QSN+ Y+ L++T
Sbjct: 129 ANKATLVC-LISDFYPG-AVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQ 186
Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPSNFTL 410
Y+C+ E +E T + PS F L
Sbjct: 187 WKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPL 225
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 60.3 bits (146), Expect = 2e-11
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI------DFESEPRFV----QSN 362
++ V G +A C + + L W ++ + R +
Sbjct: 12 LTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNRIELVRASWH 69
Query: 363 DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ S++V+ S D GQYTC T ++A LTV
Sbjct: 70 ELSISVSDVSLSDEGQYTCSLFTM-PVKTSKAYLTVLGV 107
Score = 59.1 bits (143), Expect = 6e-11
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 217 HAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWI---------HNQKELTGGRYTI 266
+ TV G T +LTCRV + W ++K L R +
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 267 LETGD----LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
+ + ++DV+ +D G+YTC + LTV
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
Score = 52.2 bits (125), Expect = 1e-08
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI-----SQAPPNPRR 175
V + + + E T C+ + W + + +A + R
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 176 KVGPN-----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
++ I++ ++ SD G Y C+ ++ Y+ VL
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106
Score = 46.8 bits (111), Expect = 1e-06
Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 13/107 (12%)
Query: 31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--------VPINPSDRISQ 82
+ Q+ + + L C WS +RI
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 83 GNYGK---SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
S+ + V SD+G YTC + K+ L+VL P
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTCSLFT--MPVKTSKAYLTVLGVP 108
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 62.7 bits (152), Expect = 3e-11
Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 13/201 (6%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ +P E P N + I V + KK W+ L +F T + +
Sbjct: 3 SSGLPPEKPKNLSCI-VNEGKKMRCEWDGGRETHLETNF------TLKSEWATHKFADCK 55
Query: 457 VNKGESTTTEVDK-FVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPL 515
+ T+ VD V V A N I + P +L I
Sbjct: 56 AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINS 115
Query: 516 GSSAFYLK--WVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE 573
+ LK W P + +++ Y I+Y++ + + P + T +S + L+
Sbjct: 116 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQI---PPEDTASTRSSFTVQDLK 172
Query: 574 PSTKYRIHLAGYTKAGDGAES 594
P T+Y + + G G S
Sbjct: 173 PFTEYVFRIRCMKEDGKGYWS 193
Score = 50.4 bits (120), Expect = 4e-07
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 13/203 (6%)
Query: 312 DQPEDYEVEAGQSATFRC--NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
++P++ + RC + + L+ + L+ ++ + + S TV
Sbjct: 9 EKPKNLSCIVNEGKKMRCEWDGGRETHLETNFT-LKSEWATHKFADCKAKRDTPTSCTVD 67
Query: 370 KS-SELDSGQYTCRAQTELDFIE---AQATLTVQVPLEAPSNFTLIQVIDAKKAV-VSWN 424
S + + A+ L + +V P N ++I + + ++W
Sbjct: 68 YSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT 127
Query: 425 PVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN 484
P Y +Q T+ S ++ V P ++ R+
Sbjct: 128 N--PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 185
Query: 485 GAYNG---PPSEIISFVTPEGVP 504
G SE S +T E P
Sbjct: 186 EDGKGYWSDWSEEASGITYEDRP 208
Score = 30.7 bits (69), Expect = 1.4
Identities = 30/246 (12%), Positives = 58/246 (23%), Gaps = 57/246 (23%)
Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
P ++L I +W + + + +K + + PT
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEW-DGGRETHLETNFTLKSEWATHKF----ADCKAKRDTPT 62
Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV-PFKNPD-----NVEGRGSTPNN 617
+ + + + G F P+ +V +
Sbjct: 63 SCTVDY-STVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSI 121
Query: 618 LVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIK 677
L ++WT + KY I +R + W+Q D
Sbjct: 122 LKLTWT--NPSIKSVIILKYNIQYRTKDAST-WSQIPPED-------------------- 158
Query: 678 VVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNG---PPSEII 734
++ V P ++ R+ G SE
Sbjct: 159 -------------------TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEA 199
Query: 735 SFVTPE 740
S +T E
Sbjct: 200 SGITYE 205
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 58.6 bits (142), Expect = 7e-11
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
V LE + ++ + W P + V Y+I Y G P+ E +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMSSSSVY-YYRITYGETGGN--SPVQE---FTVPY 57
Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
++++A ++GL P Y I + + + G
Sbjct: 58 SSSTATISGLSPGVDYTITVYAWGEDSAGYMFM 90
Score = 30.1 bits (68), Expect = 0.70
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P +E +TP +L+ISW A ++ + YRI + G + Q+ + + S
Sbjct: 8 PTKLEVVAATPTSLLISWDA---PMSSSSVYYYRITYGETG-GNSPVQEFTVPYSSSTAT 63
Query: 665 LANQPTFQPYEIKVV 679
++ Y I V
Sbjct: 64 ISGLSPGVDYTITVY 78
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 63.3 bits (153), Expect = 9e-11
Identities = 40/282 (14%), Positives = 79/282 (28%), Gaps = 26/282 (9%)
Query: 379 YTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR-G 437
YT T ++ ++ + P +F ++ + W P
Sbjct: 12 YTFLISTTFG---CTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVE 68
Query: 438 YKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNG-----PPS 492
Y+++ GS + + + L NG +
Sbjct: 69 YELKYRN----IGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWA 124
Query: 493 EIISFVTPEG-VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGP 551
E +++P+G VQ ++ + W KP + Y + Y
Sbjct: 125 ETTYWISPQGIPETXVQDMDCVYYNWQYLLCSW-KPGIGVLLDTNYNLFYWYEGLDHA-- 181
Query: 552 LLERLPYISDPTTTSA---KLAGLEPSTKYRIHLAGYTKAGDGAESKYLF----YVPFKN 604
L+ + YI + I + G ++ S + F V
Sbjct: 182 -LQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLP 240
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNT 646
P + + + + W+ +P A F Y I R +T
Sbjct: 241 PVYLTFTRESSCEIKLKWS-IPLGPIPARCFDYEIEIREDDT 281
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 58.7 bits (141), Expect = 1e-10
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAP---KPEVNWI-------------HNQKELTGGRYTI 266
+ P GK V+ +V G KP + W + + +
Sbjct: 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASN 76
Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
+ T +L I V D G Y + K ++ V+
Sbjct: 77 VYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
Score = 52.9 bits (126), Expect = 1e-08
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 12/116 (10%)
Query: 298 GSGSLTVKEHTHI-TDQPEDYEVEAGQSATFRCNAVSDPSL-KLSIVWLRG--------- 346
SGS +E T + +P+ VE G+ A K +I W +G
Sbjct: 2 SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61
Query: 347 SEPIDF-ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
F ES L + K D G Y + + + V+ P
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 46.0 bits (108), Expect = 3e-06
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASG---LPEPEIHWVHNGKPISQAPPNPRR------- 175
F +P+ ++ + K +G +P I W GK + + R
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESH 71
Query: 176 ----KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
V + I + D G Y ++V A
Sbjct: 72 NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
Score = 40.9 bits (95), Expect = 1e-04
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 23 GISASQNRHAPKQQYVTRKKEVALRNKK-VELFCIFGGTPL---PQTIW---------SK 69
G S S P ++ + V++ K + G L P W SK
Sbjct: 1 GSSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK 60
Query: 70 DGVPINPSDRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
G + + + + Y L I V D+G Y EV S ++ V A
Sbjct: 61 SGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTC-DSCGFNIDVEAP 117
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 61.4 bits (149), Expect = 2e-10
Identities = 42/290 (14%), Positives = 76/290 (26%), Gaps = 47/290 (16%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
P+ + P + VT C + +
Sbjct: 21 GQDKPFLSAWPSAV-VPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQE---S 75
Query: 182 ITIENLRKSDTGNYGCNATNSL-GYVYK------DVYVNVLAHAPEITEAPKDEYTVDGK 234
+ + + GNY C ++ + + V P + P G+
Sbjct: 76 FNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKS-GE 134
Query: 235 TVVLTCR------VF-----GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSG 283
V+L C F G K ++ G + I + A +G
Sbjct: 135 RVILQCWSDIMFEHFFLHKEGISKD---PSRLVGQIHDGVSK----ANFSIGPMMLALAG 187
Query: 284 EYTCFARNKLGTAQGSGS-----LTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDP 335
Y C+ Q S + V ++ QP +V+AG+S T C++ S
Sbjct: 188 TYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP-GPKVQAGESVTLSCSSRSSY 246
Query: 336 SLKLSIVWLR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
R G+ + + + + G Y C
Sbjct: 247 D---MYHLSREGGAHERRLPAVRK--VNRTFQADFPLGPATHGGTYRCFG 291
Score = 54.1 bits (130), Expect = 6e-08
Identities = 35/251 (13%), Positives = 66/251 (26%), Gaps = 28/251 (11%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
G V L C + + + ++ V A +G YTC +
Sbjct: 38 GGHVTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96
Query: 293 LGTAQGSGS-----LTVKEH---THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
S + V + + P V++G+ +C +
Sbjct: 97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHP-GPLVKSGERVILQCWSDIMF---EHFFLH 152
Query: 345 RGSEPIDFESEPRFVQS--NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA-----TLT 397
+ D + + + ++ +G Y C + A +
Sbjct: 153 KEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIV 212
Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
V P E PS V + V +L R ++G R L
Sbjct: 213 VTGPYEKPS-----LSAQPGPKVQAGESV---TLSCSSRSSYDMYHLSREGGAHERRLPA 264
Query: 458 NKGESTTTEVD 468
+ + T + D
Sbjct: 265 VRKVNRTFQAD 275
Score = 52.6 bits (126), Expect = 2e-07
Identities = 41/262 (15%), Positives = 74/262 (28%), Gaps = 30/262 (11%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN-- 108
V L C + K+ P + +S + V + G+YTC S+
Sbjct: 41 VTLRCH-YRHRFNNFMLYKEDRIHIPIFHGRI--FQESFNMSPVTTAHAGNYTCRGSHPH 97
Query: 109 --GVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
A S + + V P P + E V +C S + G
Sbjct: 98 SPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQC-WSDIMFEHFFLHKEG 155
Query: 164 KPISQAPPNPRRKVGPNRI--TIENLRKSDTGNYGCNATNSLGYVYK-------DVYVNV 214
+ + G ++ +I + + G Y C + + D+ V
Sbjct: 156 ISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG 215
Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-----EVNWIHNQKELTGGRYTILET 269
P ++ P + G++V L+C + E + +
Sbjct: 216 PYEKPSLSAQPGPKVQA-GESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQA 274
Query: 270 GDLKITDVAFADSGEYTCFARN 291
D + G Y CF
Sbjct: 275 -DFPLGPA--THGGTYRCFGSF 293
Score = 30.6 bits (69), Expect = 2.0
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ 378
V G T RC+ + + L + I + ++++ ++ +G
Sbjct: 35 VPRGGHVTLRCHY----RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTA--HAGN 88
Query: 379 YTCRAQTELDFIE-----AQATLTVQVPLEAPS 406
YTCR + V PS
Sbjct: 89 YTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPS 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 3e-10
Identities = 59/396 (14%), Positives = 108/396 (27%), Gaps = 140/396 (35%)
Query: 425 PVSPQSLRGHFRGYKVQTWTEKDGEGSIRE---LIVNKGEST---TTEVDKFVPASKNFA 478
P +P L G F GY V + E G + L + + E+ ++ A
Sbjct: 54 PTTPAELVGKFLGY-VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA------A 106
Query: 479 RVLAFNGAYNGPPSEII------SFVTPEGVPGTVQS--LEAIPLGSSAFYLKWVKPEQP 530
++L N E+I + S A+ G++
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-------- 158
Query: 531 NGVLMG---------------YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL--E 573
+ G Y+ Y + VG L++ ++ L+ L
Sbjct: 159 ---IFGGQGNTDDYFEELRDLYQT-YHVL----VGDLIKF---------SAETLSELIRT 201
Query: 574 PSTKYRIHLAGY------TKAGDGAESKYLFYVPFKNPDN---------VEGR--GSTPN 616
++ G + + YL +P P V + G TP
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 617 NL-------------VI---------SWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDD 654
L ++ SW + A +F+ G
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV---LFF----IG------- 307
Query: 655 VLDWRQSELVLANQPTFQPYEI--KVVQTWTEKDGEG------SIRELIVNKGESTTTEV 706
+ + + +++ + ++ EG SI L + + +
Sbjct: 308 ----------VRCYEAYPNTSLPPSILED-SLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 707 DKFVPASKNFARVLAFNGAYN----GPPSEIISFVT 738
+ +PA K L NGA N GPP +
Sbjct: 357 NSHLPAGKQVEISL-VNGAKNLVVSGPPQSLYGLNL 391
Score = 53.5 bits (128), Expect = 2e-07
Identities = 101/542 (18%), Positives = 158/542 (29%), Gaps = 210/542 (38%)
Query: 7 SEYKIGNRI------LLNVIATGISASQN--------RHAPKQQYVTRKKEVAL----RN 48
+ Y GN I LL T + ++ R K+ + +K AL
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF-DKKSNSALFRAVGE 151
Query: 49 KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN---YGKSLIIKHVEFSDQGSYTCE 105
+L IFGG QGN Y + L + +Y
Sbjct: 152 GNAQLVAIFGG----------------------QGNTDDYFEEL----RDLYQ--TYHVL 183
Query: 106 VSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH-WVHNGK 164
V DL +A + E I + F GL I W+ N
Sbjct: 184 VG-----------DLIKFSAETLS---ELIRTTLDAEKVFT---QGL---NILEWLEN-- 221
Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEA 224
P S P Y + S + V LAH
Sbjct: 222 P-SNTPDKD---------------------YLLSIPISCPL----IGVIQLAH------- 248
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK--ITDVAFADS 282
Y V T ++ G E+ L G TG + +T VA A++
Sbjct: 249 ----YVV-------TAKLLGFTPGELR-----SYLKGA------TGHSQGLVTAVAIAET 286
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC-NAVSDPSLKLSI 341
+ F + + I G RC A + SL SI
Sbjct: 287 DSWESFFVS--------VRKAITVLFFI-----------G----VRCYEAYPNTSLPPSI 323
Query: 342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ S + E P L+++ + + Q + D++ +
Sbjct: 324 L--EDSLENN-EGVPS------PMLSISNLT---------QEQVQ-DYVN-------KTN 357
Query: 402 LEAPSNFTL-IQVIDAKKAVVSWNPVS--PQSLRG---HFRGYKVQTWTEKDG-EGSIRE 454
P+ + I +++ K +V VS PQSL G R K + ++ S R+
Sbjct: 358 SHLPAGKQVEISLVNGAKNLV----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLA-FNGAYNGPPSEIISF-VTPEGVPGTVQSLEA 512
L KF S F V + F+ P S++I+ + V + +
Sbjct: 414 L-------------KF---SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-Q 456
Query: 513 IP 514
IP
Sbjct: 457 IP 458
Score = 35.4 bits (81), Expect = 0.092
Identities = 54/294 (18%), Positives = 81/294 (27%), Gaps = 119/294 (40%)
Query: 420 VVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGEST-TTEVDKFVPASKNFA 478
+V NP +L HF G K + IRE N T VD + K F
Sbjct: 1664 IVINNP---VNLTIHFGGEKGK---------RIRE---NYSAMIFETIVDGKLKTEKIFK 1708
Query: 479 RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYK 538
+ S +F + +G+ L ++ F QP LM
Sbjct: 1709 EI--------NEHSTSYTFRSEKGL-----------LSATQF-------TQPALTLMEKA 1742
Query: 539 IKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG-----YT----KAG 589
E L K GL P+ AG Y A
Sbjct: 1743 A-------------FEDL-----------KSKGLIPADAT---FAGHSLGEYAALASLAD 1775
Query: 590 -----DGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRH 644
+ +FY RG T A+P E + Y +
Sbjct: 1776 VMSIESLV--EVVFY-----------RGMTMQV------AVPRDELGRSN--YGMIAINP 1814
Query: 645 NT-GEAWNQDDVLDW------RQSELV-LAN--QPTFQPY----EIKVVQTWTE 684
+++Q+ + R LV + N Q Y +++ + T T
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ-YVAAGDLRALDTVTN 1867
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 56.5 bits (137), Expect = 4e-10
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ P + + ++ + W P + Y++++ V+G+
Sbjct: 3 SGSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQI-------- 54
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
S ++ GL P+T Y + + G G S
Sbjct: 55 CYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFS 90
Score = 46.1 bits (110), Expect = 2e-06
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ + + A A V+W P S Y+++ W +G I
Sbjct: 3 SGSSGPDQCKPPQ-VTCRSATCAQVNWEV--PLSNGTDVTEYRLE-WGGVEGSMQI---- 54
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
G + E+ PA+ + RV A + GP SE+++ VTP
Sbjct: 55 CYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
Score = 35.4 bits (82), Expect = 0.011
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 695 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
I G + E+ PA+ + RV A + GP SE+++ VTP
Sbjct: 54 ICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPP 99
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 55.5 bits (134), Expect = 7e-10
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ VP LE + ++ + W + + + Y+I Y G
Sbjct: 3 SVSSVP---TKLEVVAATPTSLLISW---DASSSSVSYYRITYGETGGNSPVQEFTV--- 53
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
++++A ++GL P Y I + Y D S
Sbjct: 54 --PGSSSTATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 43.9 bits (104), Expect = 1e-05
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
P+ ++ ++SW+ S Y++ T+ E G ++E V G
Sbjct: 4 VSSVPTKLEVVAA-TPTSLLISWDASS-----SSVSYYRI-TYGETGGNSPVQEFTVP-G 55
Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
S+T + P V A+ Y+ S S +
Sbjct: 56 SSSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94
Score = 30.8 bits (70), Expect = 0.33
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
T+ E G ++E V G S+T + P V A+ Y+ S S +
Sbjct: 38 TYGETGGNSPVQEFTVP-GSSSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94
Score = 27.7 bits (62), Expect = 4.0
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 605 PDNVEGRGSTPNNLVISWTAMP-EIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSEL 663
P +E +TP +L+ISW A + + YRI + G + Q+ + S
Sbjct: 8 PTKLEVVAATPTSLLISWDASSSSVSY------YRITYGETG-GNSPVQEFTVPGSSSTA 60
Query: 664 VLAN-QPTFQPYEIKVV 679
++ P Y I V
Sbjct: 61 TISGLSP-GVDYTITVY 76
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 57.6 bits (139), Expect = 2e-09
Identities = 23/160 (14%), Positives = 48/160 (30%), Gaps = 15/160 (9%)
Query: 233 GKTVVLTCRV-FGAPKPEVNWIHNQKELTGGRYTILETGD---LKITDVAFADSGEYTCF 288
+V + C+ A ++ I N GR I + +G Y C
Sbjct: 23 DGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ 82
Query: 289 ARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
R + S +L + ++ + G++ + C++ P +
Sbjct: 83 YRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLV-LMPGENISLTCSSAHIPFDR--FSL 139
Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
+ E + + +N ++ SG Y C
Sbjct: 140 AKEGELSLPQHQSGEHPAN---FSLGPVDLNVSGIYRCYG 176
Score = 57.2 bits (138), Expect = 3e-09
Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 9/144 (6%)
Query: 59 GTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSNGVGE-AKSY 116
L Q + K+ R+ N +I H++ + G Y C+ G S
Sbjct: 35 EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSD 94
Query: 117 SIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP 173
+++L V P+ + + + E ++ C ++ +P G+ + P
Sbjct: 95 TLELVVTGLYGKPFLSADRGLV-LMPGENISLTCSSAHIPFDRFSLAKEGEL---SLPQH 150
Query: 174 RRKVGPNRITIENLRKSDTGNYGC 197
+ P ++ + + +G Y C
Sbjct: 151 QSGEHPANFSLGPVDLNVSGIYRC 174
Score = 54.1 bits (130), Expect = 2e-08
Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 7/176 (3%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
P+ + + + + +V +C+A ++ + N
Sbjct: 6 DFPMPFISAKSSPV-IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDP 64
Query: 181 RITIENLRKSDTGNYGCNATNSLGY----VYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
I+++ + G Y C ++ V L P ++ G+ +
Sbjct: 65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMP-GENI 123
Query: 237 VLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
LTC P + + + + + V SG Y C+
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN 179
Score = 38.3 bits (89), Expect = 0.005
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ 378
+ S +C A + ++ ++ S + +F D + +G+
Sbjct: 20 IPLDGSVKIQCQA-IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR 78
Query: 379 YTCRAQTELDFIEAQATLTVQVP 401
Y C+ + TL + V
Sbjct: 79 YQCQYRIGHYRFRYSDTLELVVT 101
Score = 31.4 bits (71), Expect = 0.79
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
+ L C P + +K+G P + G + + + V+ + G Y C
Sbjct: 123 ISLTCSSAHIPFDRFSLAKEGELSLP--QHQSGEHPANFSLGPVDLNVSGIYRC 174
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 54.8 bits (132), Expect = 2e-09
Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 6/110 (5%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSW--NPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
P+ P ++ ++W N + R Y V+ T +
Sbjct: 6 SGPMMPPVGVQ-ASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 64
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
+ + V P + V+ G + S T E +
Sbjct: 65 AT---TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPS 111
Score = 54.1 bits (130), Expect = 4e-09
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 499 TPEGVPGTV-QSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLL 553
+ P ++A L + W P Y +++++
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA------ 56
Query: 554 ERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
++ TT S + GL+P+T Y + S
Sbjct: 57 NTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM 98
Score = 33.3 bits (76), Expect = 0.073
Identities = 15/144 (10%), Positives = 33/144 (22%), Gaps = 45/144 (31%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWT--AMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLD 657
P P V+ + + + I+W ++P+ + Y + W+ + +
Sbjct: 7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK----- 61
Query: 658 WRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 717
+ + V P +
Sbjct: 62 --------------------------------------NANATTLSYLVTGLKPNTLYEF 83
Query: 718 RVLAFNGAYNGPPSEIISFVTPEG 741
V+ G + S T E
Sbjct: 84 SVMVTKGRRSSTWSMTAHGTTFEL 107
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 55.0 bits (132), Expect = 3e-09
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 395 TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF-------RGYKVQTWTEKD 447
T + L I A+ V++W+P S GY+V +
Sbjct: 11 TKAFEALLSNIVKPV-ASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL-ISSTG 68
Query: 448 GEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
+G + + V GE T ++ PA A+V A + G PSE F T P
Sbjct: 69 KDGKYKSVYV--GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDI 125
Score = 41.5 bits (97), Expect = 1e-04
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 15/117 (12%)
Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV---------LMGYK 538
+ S E + + A + + L W P L GY+
Sbjct: 2 SSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYE 61
Query: 539 IKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
+ S + + T+ L L+P+ Y + + G S+
Sbjct: 62 VLISSTGKD------GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE 112
Score = 40.7 bits (95), Expect = 3e-04
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
YE+ + +G + + V GE T ++ PA A+V A + G PSE
Sbjct: 60 YEV----LISSTGKDGKYKSVYV--GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113
Query: 734 ISFVTPEG 741
F T
Sbjct: 114 EIFTTLSC 121
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 54.0 bits (129), Expect = 3e-09
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 220 EITEAPKDEYTVD--GKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGDLKI 274
E+ + Y V G TV+LTC P E+ W HN K + G + + L +
Sbjct: 6 EMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL 63
Query: 275 TDVA-FADSGEYTCFARNKLG 294
+ + SG Y C+ R
Sbjct: 64 KEFSELEQSGYYVCYPRGSKP 84
Score = 47.5 bits (112), Expect = 6e-07
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 314 PEDYEVE-AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
Y+V +G + C I+W + I + + + + S++ L++ + S
Sbjct: 12 QTPYKVSISGTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS 67
Query: 373 EL-DSGQYTCRAQ 384
EL SG Y C +
Sbjct: 68 ELEQSGYYVCYPR 80
Score = 47.1 bits (111), Expect = 1e-06
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK-SDTGNYGCNAT 200
TV C P EI W HN K I + + ++++ + +G Y C
Sbjct: 23 TVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 80
Query: 201 NSLG-----YVYKDVYV 212
S Y+Y V
Sbjct: 81 GSKPEDANFYLYLRARV 97
Score = 43.6 bits (102), Expect = 1e-05
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHV-EFSDQG 100
+V++ V L C P + +W + I D + G+ L +K E G
Sbjct: 16 KVSISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSG 73
Query: 101 SYTCEVSNGVGEAKSYSIDL 120
Y C E ++ + L
Sbjct: 74 YYVCYPRGSKPEDANFYLYL 93
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 56.4 bits (135), Expect = 4e-09
Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 12/201 (5%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR-GYKVQTWTEKDGEGSIRELIV 457
P +PSN + + + V W P L F + +I + +
Sbjct: 2 GYPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVA 61
Query: 458 NKGESTTTEVDKFVPASKNFA-RVLAFNGAYNGPPSEIISFVT------PEGVPGTVQSL 510
K ++ + K + + A V A N + ++ P +
Sbjct: 62 KKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGP 121
Query: 511 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 570
+ + +L W + + +++YQ L+ LP + +L
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPS----SKDQFELC 177
Query: 571 GLEPSTKYRIHLAGYTKAGDG 591
GL + Y + + + G
Sbjct: 178 GLHQAPVYTLQMRCIRSSLPG 198
Score = 30.2 bits (67), Expect = 2.0
Identities = 19/161 (11%), Positives = 37/161 (22%), Gaps = 14/161 (8%)
Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE---AQATLTVQVPLEAPSNF 408
+ N+ S+ +A+ L E V LE P
Sbjct: 56 IPDCVAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQ 115
Query: 409 TLIQVIDAKKAV-----VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGEST 463
L D +SW P P +++ + + + +
Sbjct: 116 ALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQE--CELR-YQPQLKGANWTLVFHLPSSKD 172
Query: 464 TTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVTPE 501
E+ A ++ + G S +
Sbjct: 173 QFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 213
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 55.6 bits (134), Expect = 5e-09
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
K V L C+ P V+ +K + L I + + +G Y C +N
Sbjct: 22 EKPVTLRCQG----PPGVDLYRLEKL---SSSRYQDQAVLFIPAMKRSLAGRYRCSYQNG 74
Query: 293 LGTAQGSGSLT--VKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGS 347
+ S L ++ QP V +G T +C +
Sbjct: 75 SLWSLPSDQLELVATGVFAKPSLSAQPGP-AVSSGGDVTLQC---QTRYGFDQFALYKEG 130
Query: 348 EPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
+P +++ R+ +++ + + SG Y C +
Sbjct: 131 DPAPYKNPERWYRAS---FPIITVTAAHSGTYRCYS 163
Score = 46.0 bits (109), Expect = 8e-06
Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
L P P + E+ VT C+ P + K S +
Sbjct: 5 PLPKPSLQALPSSL-VPLEKPVTLRCQGP----PGVDLYRLEKLSSSRYQDQ------AV 53
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
+ I +++S G Y C+ N + ++ + P ++ P + G V
Sbjct: 54 LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSS-GGDVT 112
Query: 238 LTCRVFGAPKPEVNWIHNQKELTGGRYTILETG---DLKITDVAFADSGEYTCFARNK 292
L C+ + + KE Y E I V A SG Y C++ +
Sbjct: 113 LQCQ----TRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166
Score = 41.3 bits (97), Expect = 4e-04
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDLSVLAA---PYFTVEPEFINAAEEETV 143
L I ++ S G Y C NG S ++L P + +P + V
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPG-PAVSSGGDV 111
Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
T +C + + G P AP + I + + +G Y C
Sbjct: 112 TLQC-QTRYGFDQFALYKEGDP---APYKNPERWYRASFPIITVTAAHSGTYRC 161
Score = 30.9 bits (70), Expect = 0.86
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 12/83 (14%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ 378
V + T RC + + L S R+ + K S +G+
Sbjct: 19 VPLEKPVTLRCQG----PPGVDLYRLEK------LSSSRYQDQAVLFIPAMKRS--LAGR 66
Query: 379 YTCRAQTELDFIEAQATLTVQVP 401
Y C Q + L +
Sbjct: 67 YRCSYQNGSLWSLPSDQLELVAT 89
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 53.8 bits (129), Expect = 5e-09
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 16/104 (15%)
Query: 38 VTRKKEVALRNKKVELFCIFGGTPLP--QTIWSKD-----------GVPINPS--DRISQ 82
T A + + L C T Q W + G I+PS DR++
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 83 GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
G L ++ + +D G Y C + I L VL +
Sbjct: 68 GPGL-GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
Score = 52.2 bits (125), Expect = 2e-08
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES-----------EP 356
T + + E G S +C+ S + + W + + + + +
Sbjct: 4 TGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKD 63
Query: 357 RFVQSNDYSLTVTKSSELDSGQYTCRAQT-ELDFIEAQATLTVQVP 401
R LT+ + D+G+Y C T + L V
Sbjct: 64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109
Score = 49.5 bits (118), Expect = 1e-07
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 17/101 (16%)
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKP--EVNWIHNQKELT--------------GGRYTI 266
E + G +++L C + +VNW + L R
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 267 LETGDLKITDVAFADSGEYTC-FARNKLGTAQGSGSLTVKE 306
L + + D+GEY C + GT G L V E
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLE 108
Score = 48.0 bits (114), Expect = 6e-07
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 132 PEFINAAEEETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRRKVGP---NR----- 181
I+A + ++ +C S +++W + ++ + + P +R
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 182 ---ITIENLRKSDTGNYGCN-ATNSLGYVYKDVYVNVLAHAPEITEAPK 226
+T+++L +DTG Y C T G +++ VL + +
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLE-SSVAEHGAR 117
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 54.1 bits (130), Expect = 5e-09
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 10/111 (9%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSV 544
G S ++A+ L A + W P + Y +++++
Sbjct: 4 GSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTS 63
Query: 545 KGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
D T+ S GL+P+T Y + S
Sbjct: 64 FSA------SAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSM 108
Score = 53.0 bits (127), Expect = 1e-08
Identities = 17/118 (14%), Positives = 28/118 (23%), Gaps = 6/118 (5%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSW--NPVSPQSLRGHFRGYKVQTWTEKDG 448
+ + P+ P + VSW N V R Y V+ T
Sbjct: 8 FPTSVPDLSTPMLPPVGVQ-AVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSA 66
Query: 449 EGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
+ S + P + V+ + S T E +
Sbjct: 67 SAKYKSEDTT---SLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPS 121
Score = 30.2 bits (68), Expect = 0.90
Identities = 18/144 (12%), Positives = 31/144 (21%), Gaps = 45/144 (31%)
Query: 600 VPFKNPDNVEGRGSTPNNLVISWT--AMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLD 657
P P V+ T + + +SW ++P+ + + Y + WR A + D
Sbjct: 17 TPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTS--FSASAKYKSED 74
Query: 658 WRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 717
YE
Sbjct: 75 TTSLSYTATGLKPNTMYEF----------------------------------------- 93
Query: 718 RVLAFNGAYNGPPSEIISFVTPEG 741
V+ + S T E
Sbjct: 94 SVMVTKNRRSSTWSMTAHATTYEA 117
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 53.2 bits (128), Expect = 5e-09
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ +L + + W P G ++ Y + Y G
Sbjct: 3 SGSSGRSPPSNLALASETPDSLQVSW---TPPLGRVLHYWLTYAPASGLG-----PEKSV 54
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
+ L L+ +TKYR+ ++ AG
Sbjct: 55 SVPGARSHVTLPDLQAATKYRVLVSAIYAAGRS 87
Score = 47.4 bits (113), Expect = 7e-07
Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 8/108 (7%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ PSN L VSW P G Y + T+ G G + +
Sbjct: 3 SGSSGRSPPSNLALASE-TPDSLQVSWTPPL-----GRVLHYWL-TYAPASGLGPEKSVS 55
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
V G + + A+K V A A P
Sbjct: 56 VP-GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGP 102
Score = 32.0 bits (73), Expect = 0.17
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
T+ G G + + V G + + A+K V A A
Sbjct: 41 TYAPASGLGPEKSVSVP-GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACP 99
Query: 741 GGTKN 745
G +
Sbjct: 100 SGPSS 104
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 53.7 bits (129), Expect = 6e-09
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 486 AYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVK 545
Y + + V LE + ++ + W + P + Y+I Y
Sbjct: 11 DYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISW---DAPAVTVRYYRITYGETG 67
Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
G P+ E + + ++A ++GL+P Y I + T
Sbjct: 68 GN--SPVQE---FTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Score = 39.5 bits (92), Expect = 6e-04
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
+ + + P+ ++ ++SW+ + R Y++ T+ E G
Sbjct: 18 KGENLYFQGSVSDVPTKLEVVAA-TPTSLLISWDAPA-----VTVRYYRI-TYGETGGNS 70
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493
++E V +ST T + P V A G
Sbjct: 71 PVQEFTVPGSKSTAT-ISGLKPGVDYTITVYAVTGLRLMLAGS 112
Score = 32.2 bits (73), Expect = 0.16
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 577 KYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFK 636
+ H + Y D E+ Y P +E +TP +L+ISW A
Sbjct: 4 HHHHHSSDYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDA-----PAVTVRY 58
Query: 637 YRIFWRRHNTGEAWNQDDVLDWRQSELVLAN-QPTFQPYEIKVVQTWTEKDGEGS 690
YRI + G + Q+ + +S ++ +P Y I V +
Sbjct: 59 YRITYGETG-GNSPVQEFTVPGSKSTATISGLKP-GVDYTITVYAVTGLRLMLAG 111
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 52.6 bits (126), Expect = 1e-08
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 315 EDYEVEAGQSATFRCN-AVSDPSLKLSIVWLRGSEP---------------IDFESEPRF 358
+ Y+VE G++A C+ + + + W +G P + ++ R+
Sbjct: 2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRY 61
Query: 359 -----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
+ D SL + + D G Y CR Q + + L + +
Sbjct: 62 QLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
Score = 34.9 bits (80), Expect = 0.016
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 77 SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN-GVGEAKSYSIDLSV 122
+++G+ SLIIK+V D G+Y C + G+ K + L +
Sbjct: 64 KGDLNKGDV--SLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
Score = 34.5 bits (79), Expect = 0.021
Identities = 21/88 (23%), Positives = 25/88 (28%), Gaps = 27/88 (30%)
Query: 227 DEYTVD-GKTVVLTCRVFGAPKPE---VNWI------------------HNQKELTGGRY 264
D Y V+ GK L C + W N RY
Sbjct: 2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRY 61
Query: 265 TI---LETGD--LKITDVAFADSGEYTC 287
+ L GD L I +V D G Y C
Sbjct: 62 QLKGDLNKGDVSLIIKNVTLDDHGTYCC 89
Score = 28.7 bits (64), Expect = 2.3
Identities = 13/80 (16%), Positives = 19/80 (23%), Gaps = 23/80 (28%)
Query: 141 ETVTFECKASGLPEPE---IHWVHNGKPISQAPPNPRRKVGPNR---------------- 181
+ C + + W P SQ R N
Sbjct: 10 KNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNK 69
Query: 182 ----ITIENLRKSDTGNYGC 197
+ I+N+ D G Y C
Sbjct: 70 GDVSLIIKNVTLDDHGTYCC 89
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 52.7 bits (126), Expect = 1e-08
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 20/107 (18%)
Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP---------------IDFESEPRF- 358
+ GQ T C+ +S + S+ W +GS P I ++
Sbjct: 4 DTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYT 63
Query: 359 ----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
VQ + SLT++ ++ DSG Y CR + F + + + +++
Sbjct: 64 LLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELR 110
Score = 38.0 bits (88), Expect = 0.002
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSN-GVGEAKSYSIDLSVLAAP 126
++ G SL I + D G Y C + G ++ L + A
Sbjct: 66 GKVQFGEV--SLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRAL 113
Score = 30.3 bits (68), Expect = 0.76
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 262 GRYTI---LETGD--LKITDVAFADSGEYTC 287
+YT+ ++ G+ L I++ DSG Y C
Sbjct: 60 TKYTLLGKVQFGEVSLTISNTNRGDSGVYCC 90
Score = 29.2 bits (65), Expect = 1.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 182 ITIENLRKSDTGNYGC 197
+TI N + D+G Y C
Sbjct: 75 LTISNTNRGDSGVYCC 90
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 53.6 bits (128), Expect = 1e-08
Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 15/138 (10%)
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEH--THITDQPEDYEVEAGQSATFRCNAVSDPSL 337
A E LGT ++ D V AG + +C
Sbjct: 9 AAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS 68
Query: 338 KLSIVWLRGSEPIDFE------SEPRFV----QSNDYSLTVTKSSELDSGQYTCRAQTEL 387
L W ++ + + R ++ S++++ + D G+YTC T
Sbjct: 69 SLQ--WSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM- 125
Query: 388 DFIEAQATLTVQVPLEAP 405
A++ +TV + P
Sbjct: 126 PVRTAKSLVTVLGIPQKP 143
Score = 46.7 bits (110), Expect = 3e-06
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCRVFGAPK 247
+ + LG D + + + + ++ + TV G TVVL C+V
Sbjct: 8 AAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHED 67
Query: 248 PEVNWI---------HNQKELTGGRYTILETGD----LKITDVAFADSGEYTC 287
+ W ++ L R ++ + + I++VA AD GEYTC
Sbjct: 68 SSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120
Score = 45.9 bits (108), Expect = 5e-06
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 13/111 (11%)
Query: 27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--------DGVPINPSD 78
+ + E + V L C WS +
Sbjct: 32 ADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDN 91
Query: 79 RISQGNYGK---SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
RI S+ I +V +D+G YTC + ++ ++VL P
Sbjct: 92 RIQLVTSTPHELSISISNVALADEGEYTCSIFT--MPVRTAKSLVTVLGIP 140
Score = 42.1 bits (98), Expect = 1e-04
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 13/108 (12%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI-----SQAPPNPRRKVGPN 180
TV +C+ + + W + + +A + R ++ +
Sbjct: 39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS 98
Query: 181 -----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA--HAPEI 221
I+I N+ +D G Y C+ ++ V VL P I
Sbjct: 99 TPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVLGIPQKPII 145
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 54.5 bits (131), Expect = 2e-08
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 17/161 (10%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILETGD---LKITDVAFADSGEYTCF 288
G +V + C+ G + + + R LE + I + +G Y C+
Sbjct: 19 GNSVTIWCQ--GTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76
Query: 289 ARNKLGTAQGSGSL--TVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
R+ +G +Q S L + ++ P V +G+S T C S + +
Sbjct: 77 YRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLC---QSRSPMDTFLL 132
Query: 344 LR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR 382
+ + P+ Q + ++ + + G Y C
Sbjct: 133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173
Score = 50.2 bits (120), Expect = 3e-07
Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 19/183 (10%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
L P EP + + +VT C+ + L E P NP R
Sbjct: 2 PLPKPTLWAEPGSV-ISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKAR 59
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
+I ++ + G Y C + +G+ ++ + P ++ P T GK+V
Sbjct: 60 FSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTS-GKSVT 118
Query: 238 LTCRVFGAPKPEVNWIHNQKE--------LTGGRYTILETGDLKITDVAFADSGEYTCFA 289
L C+ + ++ KE L + ++ V G Y CF+
Sbjct: 119 LLCQ----SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFS 174
Query: 290 RNK 292
+
Sbjct: 175 SHG 177
Score = 45.6 bits (108), Expect = 1e-05
Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 12/155 (7%)
Query: 51 VELFCIFGGTPLPQT-IWSKDGVPINPSDRISQGNYGKS-LIIKHVEFSDQGSYTCEVSN 108
V ++C GT + K+ P + K+ I + G Y C +
Sbjct: 22 VTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS 79
Query: 109 GVG-EAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
VG S ++L + + P + P ++VT C S P
Sbjct: 80 PVGWSQPSDPLELVMTGAYSKPTLSALPS-PLVTSGKSVTLLC-QSRSPMDTFLLCKERA 137
Query: 165 PISQAPPNPRRKVGPNRI--TIENLRKSDTGNYGC 197
++ + + G Y C
Sbjct: 138 AHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 33.3 bits (76), Expect = 0.17
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
+ G S T C +L+ L P D ++ +S+
Sbjct: 16 ISWGNSVTIWCQG----TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTED--Y 69
Query: 376 SGQYTCRAQT 385
+G+Y C ++
Sbjct: 70 AGRYRCYYRS 79
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 51.8 bits (124), Expect = 2e-08
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 561
GV + LE + ++ + W + G Y+I Y G
Sbjct: 2 GVSDVPRDLEVVAATPTSLLISW---DSGRGSYQYYRITYGETGGNSPVQEFT-----VP 53
Query: 562 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+A ++GL+P Y I + T A+
Sbjct: 54 GPVHTATISGLKPGVDYTITVYAVTDHKPHADG 86
Score = 27.6 bits (61), Expect = 5.9
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P ++E +TP +L+ISW + + YRI + G + Q+ +
Sbjct: 7 PRDLEVVAATPTSLLISWDS-----GRGSYQYYRITYGETG-GNSPVQEFTVPGPVHTAT 60
Query: 665 LANQPTFQPYEIKVV-QTWTEKDGEGSIRELIVNKGESTTTEVD 707
++ Y I V T + +G + TE+D
Sbjct: 61 ISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEID 104
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 54.1 bits (130), Expect = 4e-08
Identities = 43/230 (18%), Positives = 72/230 (31%), Gaps = 28/230 (12%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
L P+ EP F+ +E+ VT C+ + E G + P P ++ +
Sbjct: 5 LPKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKF 62
Query: 183 TIENLRKSDTGNYGCNATNSLGY----VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
I ++ G Y C + D+ V + P ++ P + G+ V
Sbjct: 63 YIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTF 121
Query: 239 TCRVFGAPKPEVNWIHNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNK 292
CR + KE GR + ++ + + V A G Y CF
Sbjct: 122 YCR----LDTATSMFLLLKE---GRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 174
Query: 293 LGTAQGSGS-----LTVKE-HTHITDQPEDYEVEAGQSATFRCNAVSDPS 336
S L V + + PED A T+ +
Sbjct: 175 --NHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQ 222
Score = 52.6 bits (126), Expect = 1e-07
Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 21/186 (11%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILETGD---LKITDVAFADSGEYTCF 288
K V + C+ G +H R E + I D+ +G+Y+C
Sbjct: 21 EKQVTICCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 78
Query: 289 ARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
R ++ S L + ++ P V +G+ TF C + S +
Sbjct: 79 YRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLDTATS---MFLL 134
Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT---ELDFIEAQATLTVQV 400
L+ + VQ+ + + G Y C F L V
Sbjct: 135 LKEGRSSHVQRGYGKVQAE---FPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191
Query: 401 PLEAPS 406
+E S
Sbjct: 192 DIENTS 197
Score = 49.5 bits (118), Expect = 1e-06
Identities = 34/201 (16%), Positives = 52/201 (25%), Gaps = 18/201 (8%)
Query: 51 VELFCIFGGTPLPQT-IWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSN 108
V + C G +G K I + G Y+C
Sbjct: 24 VTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV 81
Query: 109 GVGE-AKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
G S +DL V P +V P E VTF C + G+
Sbjct: 82 GELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMFLLLKEGR 139
Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD----VYVNVLAHAPE 220
S KV + + + G Y C + + + + V + V
Sbjct: 140 --SSHVQRGYGKVQAE-FPLGPVTTAHRGTYRCFGSYN-NHAWSFPSEPVKLLVTGDIEN 195
Query: 221 ITEAPKDEYTVDGKTVVLTCR 241
+ AP+D
Sbjct: 196 TSLAPEDPTFPADTWGTYLLT 216
Score = 38.0 bits (88), Expect = 0.006
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
V + T C + L +D P + + + S
Sbjct: 18 VPKEKQVTICCQG----NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSR--M 71
Query: 376 SGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQ 412
+GQY+C + + E L + V + +
Sbjct: 72 AGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH 108
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 55.0 bits (131), Expect = 4e-08
Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 13/180 (7%)
Query: 418 KAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF 477
V+ W+ + + G + + E+ T F
Sbjct: 221 NYVLKWDY--TYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQK 278
Query: 478 ----ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV 533
RV A +G SE I F T L S F++ P+Q
Sbjct: 279 GIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDS-FHIYIGAPKQSGNT 337
Query: 534 LM--GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
+ Y + Y+ + + ER T + L+P T Y + +T
Sbjct: 338 PVIQDYPLIYE-IIFWENTSNAER---KIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKL 393
Score = 48.1 bits (113), Expect = 8e-06
Identities = 44/350 (12%), Positives = 80/350 (22%), Gaps = 62/350 (17%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR----GYKVQTWTEKDGEGSIRELIV 457
L++P + +ID ++ WN F + W + G +I
Sbjct: 8 LKSPQKVE-VDIIDDN-FILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITS--- 62
Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGS 517
K + R+ A E+ SF +
Sbjct: 63 ---TKCNFSSLKLNVYEEIKLRIRAEKENT-SSWYEVDSFTPFRKAQIGPPEVHLEAEDK 118
Query: 518 S-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576
+ ++ + L G Y V + ER+ + K+ L P T
Sbjct: 119 AIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE----NIYSRHKIYKLSPET 174
Query: 577 KYRIHLAGYTKAGDG------AESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEH 630
Y + + P N V+ W +
Sbjct: 175 TYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWD--YTYAN 232
Query: 631 NAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGS 690
++ + + N G + W + +
Sbjct: 233 MTFQVQWLHAFLKRNPGNHLYK-----------------------------WKQIPDCEN 263
Query: 691 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
++ V + RV A +G SE I F T
Sbjct: 264 VKTTQCV----FPQNVFQKGIYL---LRVQASDGNNTSFWSEEIKFDTEI 306
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 53.4 bits (127), Expect = 5e-08
Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 17/231 (7%)
Query: 365 SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN-FTLIQVIDAKKAVVSW 423
S+++ E+ G+ +D + L N F ++ I V+
Sbjct: 15 SVSLEALEEVQVGENI-EVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNA 73
Query: 424 NPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF 483
+ +R + K+ + K E + V +S L
Sbjct: 74 KKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTN---SSVGDGEGLVH 130
Query: 484 NGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQS 543
A II +PE V V+ +A + + W +PE G+ GY +
Sbjct: 131 EIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGL-EGYILYKD- 188
Query: 544 VKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
G KV + TS L T Y +A G+ +
Sbjct: 189 --GKKVAEI--------GKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSK 229
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 50.7 bits (121), Expect = 5e-08
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 20/109 (18%)
Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID---------------FESEP 356
+ + AG T C + + + W G +
Sbjct: 2 ESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNS 61
Query: 357 RF-----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
R+ + + SLT+ + D G Y C + F L V+
Sbjct: 62 RYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKP 110
Score = 36.5 bits (84), Expect = 0.005
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVS-NGVGEAKSYSIDLSVLAAP 126
IS+GN SL I++ D G Y C V G Y +++ P
Sbjct: 67 GNISEGNV--SLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
Score = 32.3 bits (73), Expect = 0.14
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 25/90 (27%)
Query: 223 EAPKDEYTVDGKTVVLTCR--VFGAPKPEVNWI------------------HNQKELTGG 262
E+ + G V L C + W +
Sbjct: 2 ESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNS 61
Query: 263 RYTI---LETGD--LKITDVAFADSGEYTC 287
RY + + G+ L I + D G Y C
Sbjct: 62 RYQLKGNISEGNVSLTIENTVVGDGGPYCC 91
Score = 30.3 bits (68), Expect = 0.70
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPK 226
+TIEN D G Y C + + D + V + P+
Sbjct: 76 LTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV-----KPELVPR 115
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 54.2 bits (129), Expect = 6e-08
Identities = 48/353 (13%), Positives = 86/353 (24%), Gaps = 68/353 (19%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
PL++P + + D ++ WN + N
Sbjct: 3 PLKSPQKVEVDIIDD--NFILRWNRSDESVGNVT---FSFDYQKTGMDNWIKLSGCQN-- 55
Query: 461 ESTTTEVD----KFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
T+T+ + K + R+ A + E+ SF +
Sbjct: 56 -ITSTKCNFSSLKLNVYEEIKLRIRAEKENTS-SWYEVDSFTPFRKAQIGPPEVHLEAED 113
Query: 517 SS-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
+ ++ + L G Y V + ER+ + + K+ L P
Sbjct: 114 KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI----ENIYSRHKIYKLSPE 169
Query: 576 TKYRIHLAGYTKAGD--GAESK----YLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIE 629
T Y + + G S P N V+ W
Sbjct: 170 TTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWD--YTYA 227
Query: 630 HNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEG 689
+ ++ + + N G + W+Q
Sbjct: 228 NMTFQVQWLHAFLKRNPGNHLYK-----WKQ----------------------------- 253
Query: 690 SIRELIVNKGESTTTEVDKFVPASKN---FARVLAFNGAYNGPPSEIISFVTP 739
I + TT+ + RV A +G SE I F T
Sbjct: 254 -----IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTE 301
Score = 46.4 bits (109), Expect = 2e-05
Identities = 25/209 (11%), Positives = 56/209 (26%), Gaps = 13/209 (6%)
Query: 395 TLTVQVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQS----LRGHFRGYKVQTWTEKDGE 449
+ +A + + KA+ + +P + S L G Y + W G
Sbjct: 91 VDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGV 150
Query: 450 GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN--GAYNGPPSEIISFVTPEGVPGTV 507
+ + ++ K P + +V A G S + T
Sbjct: 151 -----EERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPP 205
Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
+ + + + LKW + + + +++P + TT
Sbjct: 206 PENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQC 265
Query: 568 KL-AGLEPSTKYRIHLAGYTKAGDGAESK 595
+ Y + + S+
Sbjct: 266 VFPQNVFQKGIYLLRVQASDGNNTSFWSE 294
Score = 34.1 bits (77), Expect = 0.13
Identities = 20/136 (14%), Positives = 33/136 (24%), Gaps = 14/136 (10%)
Query: 376 SGQYTCRAQTELD-------FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSP 428
Y + + L + T P + V + V+ W+
Sbjct: 169 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQN-YVLKWDY--T 225
Query: 429 QSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKN----FARVLAFN 484
+ + G + + E+ T F RV A +
Sbjct: 226 YANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASD 285
Query: 485 GAYNGPPSEIISFVTP 500
G SE I F T
Sbjct: 286 GNNTSFWSEEIKFDTE 301
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 52.6 bits (126), Expect = 6e-08
Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 20/184 (10%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
L+ EP + + +VT C+ + L E V G P NP R
Sbjct: 2 NLSKATLWAEPGSV-ISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKAR 59
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
+I ++ + G Y C + G+ ++ V + P ++ P T G+ V
Sbjct: 60 FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTS-GENVT 118
Query: 238 LTCRVFGAP---------KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCF 288
L C +++W + + G++ + V + C+
Sbjct: 119 LQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQF----QALFPVGPVTPSHRWMLRCY 174
Query: 289 ARNK 292
+
Sbjct: 175 GSRR 178
Score = 50.6 bits (121), Expect = 3e-07
Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 22/165 (13%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKE------LTGGRYTILETGDLKITDVAFADSGEYT 286
G +V + C+ E KE T I + +G Y
Sbjct: 19 GNSVTIRCQG----TLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYR 74
Query: 287 CFARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSI 341
C+ + G ++ S L + ++ P V +G++ T +C +
Sbjct: 75 CYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP-VVTSGENVTLQCGSRLRFD---RF 130
Query: 342 VWLR-GSEPIDFESEPRFVQSNDYS--LTVTKSSELDSGQYTCRA 383
+ G + + + + S + V + C
Sbjct: 131 ILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Score = 43.3 bits (102), Expect = 9e-05
Identities = 26/160 (16%), Positives = 41/160 (25%), Gaps = 11/160 (6%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSNG 109
V + C G + K+G P + K I + G Y C +
Sbjct: 22 VTIRCQ-GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP 80
Query: 110 VGE-AKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
G S ++L V P + P E VT +C S L G
Sbjct: 81 AGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQC-GSRLRFDRFILTEEGDH 138
Query: 166 ISQAPPNPRRKVGPNRI---TIENLRKSDTGNYGCNATNS 202
+ + + + S C +
Sbjct: 139 KLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRR 178
Score = 34.8 bits (80), Expect = 0.049
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
+ G S T RC +L+ L EP D ++ +S+
Sbjct: 16 ISRGNSVTIRCQG----TLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEH--H 69
Query: 376 SGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
+G+Y C + + E L + V
Sbjct: 70 AGRYRCYYYSPAGWSEPSDPLELVVTGFYN 99
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 52.8 bits (126), Expect = 7e-08
Identities = 28/199 (14%), Positives = 53/199 (26%), Gaps = 15/199 (7%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQS-------LRGHFRGYKVQTWTEKDGEGSIRE 454
++ N + K W+ + QS LR H ++
Sbjct: 1 IDVNINISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKD 60
Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGV-PGTVQSLEAI 513
+ S + + + S + V P S++A
Sbjct: 61 CYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAE 119
Query: 514 PLGSS-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL 572
+ + W KP P L ++I+Y + E + D + S L
Sbjct: 120 ITINIGLLKISWEKPVFPENNLQ-FQIRYGLSGKEVQWKMYE----VYDAKSKSVSLPVP 174
Query: 573 EPSTKYRIHLAGYTKAGDG 591
+ Y + + G G
Sbjct: 175 DLCAVYAVQVRCKRLDGLG 193
Score = 35.8 bits (82), Expect = 0.028
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 4/99 (4%)
Query: 395 TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE 454
V PS+ I+ +SW + ++++ E +
Sbjct: 103 LPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPE---NNLQFQIRYGLSGK-EVQWKM 158
Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493
V +S + + + +V G S
Sbjct: 159 YEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSN 197
Score = 32.4 bits (73), Expect = 0.39
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 10/128 (7%)
Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKN-----PDNVE-G 610
Y+ + + Y + + G +S +P P +V+
Sbjct: 61 CYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGS-LDSPPTCVLPDSVVKPLPPSSVKAE 119
Query: 611 RGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPT 670
L ISW E+N +++I + W +V D + + L
Sbjct: 120 ITINIGLLKISWEKPVFPENN---LQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDL 176
Query: 671 FQPYEIKV 678
Y ++V
Sbjct: 177 CAVYAVQV 184
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 50.1 bits (120), Expect = 8e-08
Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 13/103 (12%)
Query: 496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
S + P + LEA + L W +P GY + + + G
Sbjct: 3 SGSSGLEAP---RDLEAKEVTPRTALLTW---TEPPVRPAGYLLSFHTPGGQ-------T 49
Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF 598
+ TS +L GL PST Y L F
Sbjct: 50 QEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92
Score = 42.8 bits (101), Expect = 3e-05
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ LEAP + +V + A+++W GY + T G +E++
Sbjct: 3 SGSSGLEAPRDLEAKEV-TPRTALLTWTEPP-----VRPAGYLLSFHTP---GGQTQEIL 53
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
+ G T+ ++ P++ AR+ A G PP SF T
Sbjct: 54 LP-GGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVS-TSFTT 94
Score = 29.0 bits (65), Expect = 2.0
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 685 KDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
G +E+++ G T+ ++ P++ AR+ A G PP SF T
Sbjct: 43 HTPGGQTQEILLP-GGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVS-TSFTT 94
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 50.1 bits (120), Expect = 9e-08
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 6/107 (5%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
S F T P ++ L+W P + + +++ KG
Sbjct: 3 SGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGN- 61
Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
+ K+ L P+ + L+ G S+
Sbjct: 62 -----GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSE 103
Score = 48.5 bits (116), Expect = 3e-07
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 6/114 (5%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
A+ T+ + P+ + + W P + + ++ +G+G
Sbjct: 7 GAEIFTTLSCEPDIPNPPRIANR-TKNSLTLQWKA--PSDNGSKIQNFVLEW---DEGKG 60
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+ G ++ K PA R+ A N SE + + T
Sbjct: 61 NGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
Score = 35.8 bits (83), Expect = 0.010
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 685 KDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGG 742
+G+G+ G ++ K PA R+ A N SE + + T
Sbjct: 56 DEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCS 113
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 51.7 bits (124), Expect = 1e-07
Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 18/160 (11%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILETGD---LKITDVAFADSGEYTCF 288
K V + C+ G +H R E + I D+ +G+Y+C
Sbjct: 18 EKQVTICCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 75
Query: 289 ARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
R ++ S L + ++ P V +G+ TF C + S +
Sbjct: 76 YRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLDTATS---MFLL 131
Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
L+ + VQ+ + + G Y C
Sbjct: 132 LKEGRSSHVQRGYGKVQAE---FPLGPVTTAHRGTYRCFG 168
Score = 51.4 bits (123), Expect = 1e-07
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 20/180 (11%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
L P+ EP F+ +E+ VT C+ + E G + P P ++ +
Sbjct: 2 LPKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKF 59
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
I ++ G Y C + D+ V + P ++ P + G+ V
Sbjct: 60 YIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTF 118
Query: 239 TCRVFGAPKPEVNWIHNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNK 292
CR+ + KE GR + ++ + + V A G Y CF
Sbjct: 119 YCRL----DTATSMFLLLKE---GRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 171
Score = 46.3 bits (110), Expect = 6e-06
Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 11/157 (7%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSNG 109
V + C G + +G K I + G Y+C G
Sbjct: 21 VTICC-QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG 79
Query: 110 VGE-AKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
S +DL V P +V P E VTF C + G+
Sbjct: 80 ELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMFLLLKEGRS 137
Query: 166 ISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS 202
+ + + + + G Y C + +
Sbjct: 138 SHVQRGYGKVQA---EFPLGPVTTAHRGTYRCFGSYN 171
Score = 35.2 bits (81), Expect = 0.041
Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 15/136 (11%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
V + T C + L +D P + + + S
Sbjct: 15 VPKEKQVTICCQG----NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSR--M 68
Query: 376 SGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF 435
+GQY+C + + E L + V + + V+S V +
Sbjct: 69 AGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH---PGPEVISGEKV---TFYCRL 122
Query: 436 RGYKVQTWTEKDGEGS 451
K+G S
Sbjct: 123 DTATSMFLLLKEGRSS 138
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 49.9 bits (119), Expect = 1e-07
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 21/110 (19%)
Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID---------------FESEP 356
D + + G T C + + + W RG P ++
Sbjct: 2 DSYVEVKGVVGHPVTLPCTYSTYRGI-TTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSS 60
Query: 357 RF-----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
R+ + D SLT+ S E DSG Y CR + F + + T ++QV
Sbjct: 61 RYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVK 110
Score = 37.2 bits (86), Expect = 0.004
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 77 SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN-GVGEAKSYSIDLSVLAAP 126
IS+G+ SL I++ SD G Y C V G + + L V
Sbjct: 65 KGHISEGDV--SLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPEL 113
Score = 34.5 bits (79), Expect = 0.025
Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 24/89 (26%)
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWI------------------HNQKELTGGR 263
++ + V G V L C W H R
Sbjct: 2 DSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSR 61
Query: 264 YTI---LETGD--LKITDVAFADSGEYTC 287
Y + + GD L I + +DSG Y C
Sbjct: 62 YNLKGHISEGDVSLTIENSVESDSGLYCC 90
Score = 29.9 bits (67), Expect = 0.96
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 21/87 (24%)
Query: 132 PEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAP--------------PNPRRK 176
+ VT C S W P S + R
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 177 VGPNR------ITIENLRKSDTGNYGC 197
+ + +TIEN +SD+G Y C
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCC 90
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 51.8 bits (124), Expect = 1e-07
Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 25/176 (14%)
Query: 233 GKTVVLTCRVFG-APKP---EVNWIHNQKELTGGRYTILETGD---------LKITDVAF 279
T +TC V + + +W + E+ + E L I +
Sbjct: 18 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDW 77
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDP 335
+ E+ C + A +++ + + P E A + C ++D
Sbjct: 78 LNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTC-MITDF 136
Query: 336 SLK-LSIVWLRGSEPIDFESEPRFVQSND--YS----LTVTKSSELDSGQYTCRAQ 384
+ +++ W +P + + + D Y L V KS+ +TC
Sbjct: 137 FPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVL 192
Score = 44.1 bits (104), Expect = 6e-05
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 16/143 (11%)
Query: 42 KEVALRNKKVELFCI---FGGTPLPQTI-WSKDGVPIN---PSDRISQGNYGKS----LI 90
K+V ++ C+ W D V ++ R Q N L
Sbjct: 12 KDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELP 71
Query: 91 IKHVEFSDQGSYTCEVSNG---VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
I H ++ + + C V++ K+ S AP P ++ V+ C
Sbjct: 72 IMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTC 131
Query: 148 KASGL-PEP-EIHWVHNGKPISQ 168
+ PE + W NG+P
Sbjct: 132 MITDFFPEDITVEWESNGQPAEN 154
Score = 34.1 bits (78), Expect = 0.10
Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPS--LKLSIVWLR-GSEPIDFESEPRFVQSND-YS---- 365
P+D + + C V ++ W E +++PR Q N +
Sbjct: 11 PKD-VLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSE 69
Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQ 412
L + L+ ++ CR + + T++ +
Sbjct: 70 LPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLP 116
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 48.7 bits (116), Expect = 2e-07
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
P G S + +S+F + WV + G++++Y+ + E
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSASDT---VSGFRVEYELSEEGD-----EPQYLD 53
Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
T TS + L P KY +++ ++ G+ +
Sbjct: 54 LPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLI 88
Score = 33.6 bits (77), Expect = 0.032
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 401 PLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
PL + T V + VVSW S G++V + + + L +
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSAS-----DTVSGFRV-EYELSEEGDEPQYLDLP 55
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
+T+ + +P K V + S T
Sbjct: 56 -STATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 48.6 bits (116), Expect = 2e-07
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
+ L + + + W E P G + Y++ Y S + L D +A
Sbjct: 6 KGLAFTDVDVDSIKIAW---ESPQGQVSRYRVTYSSPEDGI-----HELFPAPDGEEDTA 57
Query: 568 KLAGLEPSTKYRIHLAGYTKAGDG 591
+L GL P ++Y + + +
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMES 81
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 49.5 bits (118), Expect = 2e-07
Identities = 23/127 (18%), Positives = 33/127 (25%), Gaps = 28/127 (22%)
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLK-LSIVWLRGSEP------ 349
+GSG V G A C + + + W R
Sbjct: 2 RGSGQFRV------IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLY 55
Query: 350 -----IDFESEPRF----------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
D E P + + +L + D G YTC + EA
Sbjct: 56 RNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAV 115
Query: 395 TLTVQVP 401
L V+ P
Sbjct: 116 ELKVEDP 122
Score = 48.4 bits (115), Expect = 7e-07
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 75 NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
+ I +G +L I++V FSD+G YTC + + +++L V P++ + P
Sbjct: 75 LLKESIGEGKV--ALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKV-EDPFYWINP 128
Score = 43.8 bits (103), Expect = 2e-05
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 28/112 (25%)
Query: 223 EAPKDEYTVD-GKTVVLTCRV---FGAPKPEVNW-----------IHNQKELTG------ 261
P G L CR+ A EV W N K+
Sbjct: 10 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 69
Query: 262 -GRYTI----LETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
GR + + G L+I +V F+D G YTCF R+ + + L V++
Sbjct: 70 RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121
Score = 40.3 bits (94), Expect = 3e-04
Identities = 26/112 (23%), Positives = 34/112 (30%), Gaps = 24/112 (21%)
Query: 129 TVEPEFINAAEEETVTFECKAS---GLPEPEIHW--------VH---NGK--PISQAPPN 172
I A + C+ S E+ W VH NGK QAP
Sbjct: 10 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 69
Query: 173 PRR--------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
R G + I+N+R SD G Y C + V + V
Sbjct: 70 RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 49.0 bits (117), Expect = 2e-07
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
+ L + A + W E + ++ Y S +G G +
Sbjct: 8 LAPPRHLGFSDVSHDAARVFW---EGAPRPVRLVRVTYVSSEGGHSGQTE------APGN 58
Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
TSA L L ST Y + + G +
Sbjct: 59 ATSAMLGPLSSSTTYTVRVTCLYPGGGSSTL 89
Score = 42.0 bits (99), Expect = 6e-05
Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 11/105 (10%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
L P + V A V W R +V T+ +G G + G
Sbjct: 7 GLAPPRHLGFSDV-SHDAARVFWEGAP-----RPVRLVRV-TYVSSEG-GHSGQTEAP-G 57
Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
+T+ + ++ RV VT + P
Sbjct: 58 NATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGR--VTTKKAPS 100
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 49.0 bits (117), Expect = 3e-07
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 10/114 (8%)
Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
P L A+ L L W + P + Y I+ + +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHW---KPPQNPVDTYDIQVTAPGAPPLQAET-------PG 56
Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPN 616
+ L L T Y + G + + F + P ++E + TP+
Sbjct: 57 SAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTPS 110
Score = 43.2 bits (102), Expect = 3e-05
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 11/123 (8%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ + P+ + + + AV+ W P Y + T E
Sbjct: 3 SGSSGPDGPTQLRALNLTE-GFAVLHWKPPQ-----NPVDTYDI-QVTAPGAPPLQAET- 54
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
G + + V + A V G P+ I+F T P +++ E P G
Sbjct: 55 --PGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPAS-ITFTTGLEAPRDLEAKEVTPSG 111
Query: 517 SSA 519
S+
Sbjct: 112 PSS 114
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 48.4 bits (115), Expect = 3e-07
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP- 557
G + L + +S+ L W E P G + +++ + + P L
Sbjct: 4 GSSGSRPRLSQLSVTDVTTSSLRLNW---EAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQ 60
Query: 558 --YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
+ T SA L L T Y + L G
Sbjct: 61 RELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKA 96
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 52.0 bits (123), Expect = 3e-07
Identities = 48/302 (15%), Positives = 88/302 (29%), Gaps = 46/302 (15%)
Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSG 283
G+ VVLTC + + W +Q G L I F D+G
Sbjct: 12 ELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTL-----TIQVKEFGDAG 64
Query: 284 EYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
+YTC ++ + L KE + + E RC A + S + + W
Sbjct: 65 QYTCHKGGEVLSHS-LLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEA-KNYSGRFTCWW 122
Query: 344 LRGSEPIDF---------ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
L + +Y+ Q + A+
Sbjct: 123 LTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEE 182
Query: 395 TLTVQVPLEA-----------------------PSNFTLIQVIDAKKAVVSWNPVSPQSL 431
+L ++V ++A P N L + ++++ VSW P +
Sbjct: 183 SLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEY--PDTW 240
Query: 432 RGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP 491
+ + + G+ + + T+ V + V A + Y+
Sbjct: 241 STPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATV---ICRKNASISVRAQDRYYSSSW 297
Query: 492 SE 493
SE
Sbjct: 298 SE 299
Score = 45.9 bits (107), Expect = 3e-05
Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 15/140 (10%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL 187
+ VE ++ A E V C E I W + + +TI+
Sbjct: 9 YVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQ--------SSEVLGSGKTLTIQVK 58
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVFGAP 246
D G Y C+ + + + I + + L C
Sbjct: 59 EFGDAGQYTCHKGGEVL---SHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYS 115
Query: 247 KP-EVNWIHNQKELTGGRYT 265
W+
Sbjct: 116 GRFTCWWLTTISTDLTFSVK 135
Score = 35.5 bits (80), Expect = 0.050
Identities = 27/157 (17%), Positives = 38/157 (24%), Gaps = 13/157 (8%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
V L C W+ D GK+L I+ EF D G YTC V
Sbjct: 24 VVLTC--DTPEEDGITWTLDQSSEVLGS-------GKTLTIQVKEFGDAGQYTCHKGGEV 74
Query: 111 GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP 170
+ L ++ + + C+A W
Sbjct: 75 --LSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTF 132
Query: 171 P--NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY 205
+ R P +T S G N
Sbjct: 133 SVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSV 169
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 51.2 bits (122), Expect = 3e-07
Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 47/195 (24%)
Query: 233 GKTVVLTCRVFGAPKPE-----VNWIHNQKELTGGRYTI--------------------- 266
V + C +F + + W + +
Sbjct: 18 NDNVTIFCNIFYSQPLNITSMGITW-FWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWR 76
Query: 267 LETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
L++GD L++ + ++GEY C AQG+ L V +
Sbjct: 77 LKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ-VGMKENE 135
Query: 325 ATFRCNAVSD--PSLKLSIVWLRGSEPIDFE---------SEPRFVQSNDYS----LTVT 369
+ C S P ++I W + ++ ++ L +
Sbjct: 136 DKYMCE-SSGFYPE-AINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLN 193
Query: 370 KSSELDSGQYTCRAQ 384
S E Y C +
Sbjct: 194 SSQEDPGTVYQCVVR 208
Score = 49.7 bits (118), Expect = 1e-06
Identities = 33/226 (14%), Positives = 58/226 (25%), Gaps = 44/226 (19%)
Query: 141 ETVTFECKASGLPEPE-----IHW------------VHNGKPISQAPPNPRRKVGPNR-- 181
+ VT C I W V Q P V P R
Sbjct: 19 DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLK 78
Query: 182 -----ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
+ + ++ + G Y C + V + V+A +P +
Sbjct: 79 SGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA-SPASRLLLDQV-GMKENED 136
Query: 237 VLTCRVFG-APKP-EVNWIHN------QKELTGGRYT--ILETGD--------LKITDVA 278
C G P+ + W E++ T ++ D LK+
Sbjct: 137 KYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
Y C R+ + T+ H + E + + +
Sbjct: 197 EDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETEKTDNFSAAA 242
Score = 45.4 bits (107), Expect = 2e-05
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 77 SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
R+ G+ SL + ++ + G Y CEV +A+ ++ L V+A+P + +
Sbjct: 74 PWRLKSGDA--SLRLPGIQLEEAGEYRCEVVVTPLKAQG-TVQLEVVASPASRLLLD-QV 129
Query: 137 AAEEETVTFECKASG-LPEP-EIHWVHNGKPISQAPP 171
+E + C++SG PE I W +
Sbjct: 130 GMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166
Score = 40.8 bits (95), Expect = 8e-04
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 22/111 (19%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSL---KLSIVWLR-----GSEPIDFE----------- 353
+ T CN L + I W E FE
Sbjct: 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRP 68
Query: 354 ---SEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
P ++S D SL + ++G+Y C + L V
Sbjct: 69 GAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS 119
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 48.2 bits (115), Expect = 3e-07
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 11/100 (11%)
Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
+++ + + + W P P + G + + + + TS
Sbjct: 6 FNIKVTNITLTTAVVTWQPPILP---IEGILVTFGRKNDPS-----DETTVDLTSSITSL 57
Query: 568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY---VPFKN 604
L LEP+T Y I + F + +
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHH 97
Score = 37.8 bits (88), Expect = 0.001
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
L+ P N + + AVV+W P P G V T+ K+ + +
Sbjct: 2 LQPPFNIKVTNI-TLTTAVVTWQP--PIL---PIEGILV-TFGRKNDPSDETTVDL-TSS 53
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
T+ + P + R++A NG PP +F T
Sbjct: 54 ITSLTLTNLEPNTTYEIRIVARNGQQYSPPVS-TTFTT 90
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 48.6 bits (116), Expect = 4e-07
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLP 557
+ P + + P S+A +++ +PE GV ++ YK ++++V
Sbjct: 3 SGSSGPSSPSIDQVEPYSSTA-QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 61
Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
S + GL+P T Y + LA G G S
Sbjct: 62 EAS--MEGIVTIVGLKPETTYAVRLAALNGKGLGEIS 96
Score = 38.2 bits (89), Expect = 0.001
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF-RGYKVQTWTEKDGEGSI 452
+ P +PS + + A V ++ P++ G YK + +
Sbjct: 1 GSSGSSGP-SSPSIDQV--EPYSSTAQVQFDE--PEATGGVPILKYKAEWRAVGEEVWHS 55
Query: 453 RELIVN-KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPG 505
+ + P + R+ A NG G S F T P P
Sbjct: 56 KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPS 110
Score = 28.6 bits (64), Expect = 3.3
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 695 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
+ P + R+ A NG G S F T
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 48.7 bits (116), Expect = 4e-07
Identities = 27/129 (20%), Positives = 39/129 (30%), Gaps = 33/129 (25%)
Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSL--KLSIVWLRGSEP------- 349
+ SL++ T E E G++A C P L I WL
Sbjct: 3 ARSLSI------TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQV 56
Query: 350 --------IDFESEPRF----------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
I + P ++S D S+ VT D G Y C+ +
Sbjct: 57 IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN 116
Query: 392 AQATLTVQV 400
+ L V V
Sbjct: 117 KKIHLVVLV 125
Score = 44.1 bits (104), Expect = 2e-05
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 76 PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
S+ + G+ S+ + +++ SD G+Y C+V G A I L VL
Sbjct: 80 TSNDLKSGDA--SINVTNLQLSDIGTYQCKVKKAPGVANK-KIHLVVL 124
Score = 42.9 bits (101), Expect = 4e-05
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 33/115 (28%)
Query: 223 EAPKDEYTVD-GKTVVLTCRVFGAPKP----EVNWI---------------HNQKELTG- 261
P++ G+T L C+ +P+ ++ W+ ++ ++
Sbjct: 9 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 68
Query: 262 ------GRYTILET----GD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
GR GD + +T++ +D G Y C + G A L V
Sbjct: 69 YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 39.5 bits (92), Expect = 5e-04
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 31/119 (26%)
Query: 128 FTVE--PEFINAAEEETVTFECKASGLPEP----EIHWVHNGKPISQAPP-----NPRRK 176
++ E I A+ ET CK + PE +I W+ + + + +
Sbjct: 6 LSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKI 65
Query: 177 VGP------NR--------------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
R I + NL+ SD G Y C + G K +++ VL
Sbjct: 66 YDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 50.4 bits (120), Expect = 4e-07
Identities = 28/167 (16%), Positives = 45/167 (26%), Gaps = 6/167 (3%)
Query: 343 WLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTE-LDFIEAQATLTVQVP 401
L P + + + YT + + V
Sbjct: 38 QLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVK 97
Query: 402 LEAPSNFTLIQVIDAKKAVVSWN-PVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
AP N T+ + +++W+ P P + + Y V W+E D +
Sbjct: 98 PRAPGNLTVHTNVSDT-LLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 156
Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVTPEGVP 504
S ARV A+ AYN SE + P
Sbjct: 157 PSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREP 203
Score = 30.0 bits (67), Expect = 2.1
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 7/111 (6%)
Query: 488 NGPPSEIISFVTPEGV-PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMG---YKIKYQS 543
SF E V P +L S L W P P+ L Y + S
Sbjct: 81 GQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWS 140
Query: 544 VKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ + L+ YR + + +A + S
Sbjct: 141 ENDPAD---FRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWS 188
Score = 29.2 bits (65), Expect = 3.9
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 679 VQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IIS 735
V W+E D + S ARV A+ AYN SE
Sbjct: 136 VNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK 195
Query: 736 FVTPEG 741
+
Sbjct: 196 WHNSYR 201
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 47.8 bits (114), Expect = 4e-07
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
+E + + + W P+ + G+++ Y +R
Sbjct: 7 SQIEVKDVTDTTALITW---MPPSQPVDGFELTYGIKDVPG-----DRTTIDLTEDENQY 58
Query: 568 KLAGLEPSTKYRIHLAGYTKAGDG 591
+ L+P T+Y + L
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMSS 82
Score = 44.7 bits (106), Expect = 6e-06
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
+ L+APS + V A+++W P S G+++ T+ KD G + +
Sbjct: 1 MRLDAPSQIEVKDV-TDTTALITWMPPS-----QPVDGFEL-TYGIKDVPGDRTTIDLT- 52
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
+ + P ++ +++ G + P++ +F T
Sbjct: 53 EDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAK-ETFTTGLAAA 96
Score = 27.7 bits (62), Expect = 4.4
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
T+ KD G + + + + P ++ +++ G + P++ +F T
Sbjct: 36 TYGIKDVPGDRTTIDLT-EDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAK-ETFTT 91
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 48.3 bits (115), Expect = 5e-07
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 25/107 (23%)
Query: 45 ALRNKKVELFCIFGGTPLP-----QTIWSKD-------------GVPINPSDRIS----- 81
V L C + Q W++ G + S R+
Sbjct: 12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71
Query: 82 --QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
SL + + D+G+YTC ++S I L VLA P
Sbjct: 72 LGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 36.3 bits (84), Expect = 0.005
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 28/100 (28%)
Query: 233 GKTVVLTCRVFG--APKPEVNWIHNQKELTGGRYTIL----------------------- 267
G +V L C + V+ + + G +
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 268 ETGD--LKITDVAFADSGEYTC-FARNKLGTAQGSGSLTV 304
E + L++ + D G YTC F G+ L V
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 36.0 bits (83), Expect = 0.009
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 26/113 (23%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPE-----IHWVHNGKPISQA----------PPNP 173
+ + ++VT C + W +G+ S A +
Sbjct: 5 QAPTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 174 RRKVGPNR---------ITIENLRKSDTGNYGCN-ATNSLGYVYKDVYVNVLA 216
R + R + + LR D GNY C T G D+++ VLA
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116
Score = 35.2 bits (81), Expect = 0.017
Identities = 20/112 (17%), Positives = 24/112 (21%), Gaps = 23/112 (20%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIV---WLRGSEP-------------IDFESEP 356
P G S T C + W R E
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 357 RFVQS------NDYSLTVTKSSELDSGQYTCRAQTELD-FIEAQATLTVQVP 401
FV + + SL + D G YTC T L V
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 47.8 bits (114), Expect = 5e-07
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 498 VTPEGVPGT-VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
+ VP T + LE +++ L W +P GY ++ G +
Sbjct: 4 GSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFRE----- 58
Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ T + GL ++ Y + + K G S
Sbjct: 59 --VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYS 94
Score = 45.5 bits (108), Expect = 3e-06
Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
+ VP P A +SW P GY ++ + +G
Sbjct: 6 SGPVP-ATPILQLEECCTHNNSATLSWKQ--PPLSTVPADGYILE-LDDGNGGQFRE--- 58
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
V G+ T VD S ARV AFN P S+ + T EG
Sbjct: 59 VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 38.2 bits (89), Expect = 0.001
Identities = 19/58 (32%), Positives = 23/58 (39%)
Query: 684 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
E D + V G+ T VD S ARV AFN P S+ + T EG
Sbjct: 47 ELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 50.2 bits (120), Expect = 5e-07
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 31/187 (16%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIH------------NQKELTGGRYTILETGDL 272
P E + G LTC + G + G Y++ + L
Sbjct: 11 PALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSV--SSVL 68
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD----QPEDYEVEAGQSATFR 328
+ +TC A + +L+ +T + P E+ + T
Sbjct: 69 PGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLT 128
Query: 329 CNAVSDPSLK-LSIVWLRGSEPID------FESEPRFVQSND----YS-LTVTKSSELDS 376
C S K + + WL+GS+ + + S Q S L V
Sbjct: 129 C-LARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKG 187
Query: 377 GQYTCRA 383
++C
Sbjct: 188 DTFSCMV 194
Score = 44.5 bits (105), Expect = 4e-05
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 13/139 (9%)
Query: 43 EVALRNKKVELFCIFGGTPLPQTI---WSKDG---VPINPSDRISQGNYGKS--LIIKHV 94
E L + L C G + W+ P +R G Y S L
Sbjct: 14 EDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAE 73
Query: 95 EFSDQGSYTCEVSN---GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG 151
++ ++TC + + S + + P A E VT C A G
Sbjct: 74 PWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARG 133
Query: 152 L--PEPEIHWVHNGKPISQ 168
+ + W+ + + +
Sbjct: 134 FSPKDVLVRWLQGSQELPR 152
Score = 41.8 bits (98), Expect = 3e-04
Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 12/150 (8%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWV----HNGKPISQAPPNPRRKVGPNRI- 182
P + C +GL + +GK Q PP +
Sbjct: 7 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSS 66
Query: 183 --TIENLRKSDTGNYGCNATNS--LGYVYKDVYVNVLAHAPEIT-EAPKDEYTVDGKTVV 237
+ + C A + + + PE+ P E + V
Sbjct: 67 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVT 126
Query: 238 LTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
LTC G +PK V W+ +EL +Y
Sbjct: 127 LTCLARGFSPKDVLVRWLQGSQELPREKYL 156
Score = 36.8 bits (85), Expect = 0.014
Identities = 18/103 (17%), Positives = 26/103 (25%), Gaps = 5/103 (4%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLK-LSIVWLRGSEPIDFESEPRFVQSNDYS----LT 367
+P ++ G A C ++ W S + P YS L
Sbjct: 10 RPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLP 69
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTL 410
+TC A ATL+ P L
Sbjct: 70 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLL 112
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 47.9 bits (114), Expect = 5e-07
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 504 PGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 561
+ SL+ + L W +P P G L Y++ + + + +
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLN-QDEE---------WHQM 58
Query: 562 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
L L+P T Y + + T G G S
Sbjct: 59 VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFS 91
Score = 32.5 bits (74), Expect = 0.12
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 403 EAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
E+ S +L V + + ++W P++ G Y++ +D E
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRN-PGGNLSYELH-VLNQDEEWH------QMVL 60
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPGT 506
+ K P + RV GP S F T P P +
Sbjct: 61 EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSGPSS 106
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 48.1 bits (115), Expect = 6e-07
Identities = 17/92 (18%), Positives = 33/92 (35%)
Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
+ S IS P +PG +L +G + L++ + + ++ Q
Sbjct: 2 SSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVG 61
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
+ L ++P S ++ L P T Y
Sbjct: 62 EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYS 93
Score = 40.4 bits (95), Expect = 3e-04
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
+ T++ VP E P T + + + + + P + + V+ G
Sbjct: 4 GSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRP--GYDGKTSISRWLVEAQVGVVG 61
Query: 449 EGSIRELI---VNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEI-ISFVTPEGV 503
EG LI N+ ++ + EV P + +F R+ N PPS+ T +
Sbjct: 62 EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSF-RMRQVNIVGTSPPSQPSRKIQTLQSG 120
Query: 504 PGT 506
P +
Sbjct: 121 PSS 123
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 49.5 bits (118), Expect = 6e-07
Identities = 31/185 (16%), Positives = 51/185 (27%), Gaps = 21/185 (11%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
L P EP + + VT C+ E K P+ V +
Sbjct: 2 HLPKPTLWAEPGSV-ITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQ 59
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK-----DVYVNVLAHAPEITEAPKDEYTVDGKTV 236
I ++ TG Y C + + ++ V P ++ P G V
Sbjct: 60 FPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNS-GGNV 118
Query: 237 VLTCRVFGAP---------KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
L C A + E N + G + V+ + Y C
Sbjct: 119 TLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSS----RAIFSVGPVSPSRRWWYRC 174
Query: 288 FARNK 292
+A +
Sbjct: 175 YAYDS 179
Score = 48.3 bits (115), Expect = 2e-06
Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 19/166 (11%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE----TGDLKITDVAFADSGEYTCF 288
G V L C+ G + + ++ +K+ I + G I + + +G Y C+
Sbjct: 19 GSPVTLRCQ--GGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCY 76
Query: 289 ARNK-LGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
+ G ++ S L + ++ QP V +G + T +C +
Sbjct: 77 YGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSP-VVNSGGNVTLQC---DSQVAFDGFI 132
Query: 343 WLR--GSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
+ E S+P S+ +V S Y C A
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178
Score = 41.0 bits (96), Expect = 5e-04
Identities = 28/157 (17%), Positives = 45/157 (28%), Gaps = 14/157 (8%)
Query: 51 VELFCIFGGTPLPQT-IWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSN 108
V L C G Q ++ RI Q K I + + G Y C +
Sbjct: 22 VTLRC--QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS 79
Query: 109 GVGE--AKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
S ++L V A P + +P VT +C S + G
Sbjct: 80 DTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQC-DSQVAFDGFILCKEG 137
Query: 164 KPISQAPPNPRRKVGPN---RITIENLRKSDTGNYGC 197
+ N + + ++ + S Y C
Sbjct: 138 EDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174
Score = 34.4 bits (79), Expect = 0.064
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWL---RGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
+ G T RC + L + + P V+ + +
Sbjct: 16 ITQGSPVTLRCQG----GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWE--H 69
Query: 376 SGQYTCRAQTE 386
+G+Y C ++
Sbjct: 70 TGRYRCYYGSD 80
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 50.4 bits (120), Expect = 7e-07
Identities = 42/246 (17%), Positives = 74/246 (30%), Gaps = 35/246 (14%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIH------NQKELTGGRYTILETGDLKITDVAFADSGEYT 286
+TV+L C + + +H + L G + + + I + +G Y
Sbjct: 21 EETVILQCW--SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYR 78
Query: 287 CFARNKLGTAQGSGS-----LTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLK 338
C+ Q S + + ++ QP V AG+S T C S S
Sbjct: 79 CYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGP-TVLAGESVTLSC---SSRSSY 134
Query: 339 LSIVWLR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATL 396
R + F + P+ + + ++ G Y C E
Sbjct: 135 DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYE----- 187
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
S+ L+ V +P P S G+ R + E + +
Sbjct: 188 -----WSNSSDPLLVSVTGNPSN-SWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLDL 241
Query: 457 VNKGES 462
V +G S
Sbjct: 242 VPRGSS 247
Score = 45.7 bits (108), Expect = 2e-05
Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 13/157 (8%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
V L C + + ++G + I + G + I + G+Y C S
Sbjct: 24 VILQC-WSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82
Query: 108 NGVGE----AKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
A S +D+ + P + +P E+VT C +S H
Sbjct: 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSC-SSRSSYDMYHLS 140
Query: 161 HNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
G+ + + G + + G Y C
Sbjct: 141 REGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRC 177
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 47.0 bits (112), Expect = 8e-07
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
L+ + ++ + W P+ + GY+I Y G E P++TS
Sbjct: 6 TDLQVTNVTDTSITVSW---TPPSATITGYRITYTPSNGPG-----EPKELTVPPSSTSV 57
Query: 568 KLAGLEPSTKYRIHLAGYTKAGDG 591
+ GL P +Y + + +
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQES 81
Score = 44.0 bits (104), Expect = 9e-06
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
L+AP++ + V VSW P S GY++ T+T +G G +EL V
Sbjct: 2 LDAPTDLQVTNV-TDTSITVSWTPPS-----ATITGYRI-TYTPSNGPGEPKELTVP-PS 53
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
ST+ + P + V A PP
Sbjct: 54 STSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQTTGGHHHH 96
Score = 29.7 bits (67), Expect = 0.84
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
T+T +G G +EL V ST+ + P + V A PP + T
Sbjct: 35 TYTPSNGPGEPKELTVP-PSSTSVTITGLTPGVEYVVSVYALKDNQESPPLV-GTQTT 90
Score = 27.0 bits (60), Expect = 9.2
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P +++ T ++ +SWT +A YRI + N G ++ + + +
Sbjct: 5 PTDLQVTNVTDTSITVSWTP-----PSATITGYRITYTPSN-GPGEPKELTVPPSSTSVT 58
Query: 665 LANQPTFQPYEIKVV 679
+ Y + V
Sbjct: 59 ITGLTPGVEYVVSVY 73
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 47.7 bits (113), Expect = 8e-07
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 25/122 (20%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSL--KLSIVWLRGSEP--------------IDFE 353
+ + G T C+ S + +S W E +
Sbjct: 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61
Query: 354 SEPRF---------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEA 404
F D S+ + D+G +TC + D + + +T+ V +
Sbjct: 62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
Query: 405 PS 406
P+
Sbjct: 122 PT 123
Score = 38.8 bits (90), Expect = 0.001
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDLSVLAAP 126
S++I ++++SD G++TC+V N K+ + L V
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
Score = 37.3 bits (86), Expect = 0.003
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 30/115 (26%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRV----FGAPKPEVNWIHNQK------------------- 257
+ ++ Y G V L C + + W + +
Sbjct: 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61
Query: 258 --ELTGGRYTIL---ETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
R + D + I ++ ++D+G +TC +N + +T+
Sbjct: 62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
Score = 31.5 bits (71), Expect = 0.36
Identities = 19/120 (15%), Positives = 27/120 (22%), Gaps = 29/120 (24%)
Query: 129 TVEPEFINAAEEETVTFEC--------------------KASGLPEPEIHWVHNGKPISQ 168
+ A VT C + H+ I +
Sbjct: 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDE 62
Query: 169 APPNPRRKVGPNR-------ITIENLRKSDTGNYGCNATNS--LGYVYKDVYVNVLAHAP 219
R I I NL SD G + C+ N + V + V P
Sbjct: 63 VGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-06
Identities = 72/477 (15%), Positives = 141/477 (29%), Gaps = 152/477 (31%)
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS- 167
G G K+ +A + V +CK +I W++ S
Sbjct: 160 GSG--KT------WVAL----------DVCLSYKV--QCKMDF----KIFWLNLKNCNSP 195
Query: 168 ------------QAPPN--PRRKVGPN-RITIENLRKSDTG-----NYGCNATNSLGYVY 207
Q PN R N ++ I +++ Y N L V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCL-LVL 250
Query: 208 KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR-------VFGAPKPEVNWIHNQKELT 260
+V + A + + K ++ T R + A ++ H+ LT
Sbjct: 251 LNVQ------NAKAWNA----FNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 261 GGRYTILETGDL--KITDVAFADSGEYTC---------FA---RNKLGTAQGSGSLTVKE 306
E L K D D A R+ L T + +
Sbjct: 300 PD-----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 307 HTHITD------QPED----YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
T I + +P + ++ + + F + P++ LS++W + I +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFD----RLSVFPPS-AHIPTILLSLIW---FDVIKSDVMV 406
Query: 357 RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDA 416
+ + YSL E + T + I L V++ E + +++ +
Sbjct: 407 VVNKLHKYSLV-----EKQPKESTIS----IPSI--YLELKVKLENEYALHRSIVDHYNI 455
Query: 417 KKAVVSWNPVSPQSLRG---HFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPA 473
K S + P L G+ ++ + R + ++ +F+
Sbjct: 456 PKTFDSDDL-IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---------FRFLE- 504
Query: 474 SKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQP 530
++ + A+N S + T+Q L+ FY ++ P
Sbjct: 505 ----QKIRHDSTAWNASGS----------ILNTLQQLK--------FYKPYICDNDP 539
Score = 41.8 bits (97), Expect = 0.001
Identities = 73/458 (15%), Positives = 115/458 (25%), Gaps = 171/458 (37%)
Query: 42 KEV----ALRNKKVEL---FCIF----GGTPLP-------QTIWSK---------DGVPI 74
K + KV+ F IF P Q + + D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SS 221
Query: 75 NPSDRISQG-----------NYGKSLII-------KHVE-FSDQGSYTC---------EV 106
N RI Y L++ K F+ C +V
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS----CKILLTTRFKQV 277
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTF-----ECKASGLPEPEIHWVH 161
++ + A + I L + T +E + +C+ LP E+ +
Sbjct: 278 TDFLSAATTTHISLDHHSMT-LT---------PDEVKSLLLKYLDCRPQDLP-REVLTTN 326
Query: 162 NGKP--ISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN-----SLG----YVYKDV 210
P +S + G +N + C+ SL Y+ +
Sbjct: 327 ---PRRLSIIAE--SIRDGLATW--DNWKH-----VNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 211 YVNVLAHAPE---ITEA------PKDEYTVDGKTVVLTCR---VFGAPKPEVNWIHN-QK 257
+ L+ P I + V + V PK I +
Sbjct: 375 FDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 258 ELTG-------------GRYTILETGDLKITDVAFADSGEYTC----------------- 287
EL Y I +T D + D Y
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSHIGHHLKNIEHPERMT 491
Query: 288 ----------FARNKL---GTA-QGSGSLT-----VKEH-THITDQPEDYEVEAGQSATF 327
F K+ TA SGS+ +K + +I D YE F
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 328 --RC--NAVSDPSLKL-SIVWLRGSEPIDFESEPRFVQ 360
+ N + L I + E I FE + VQ
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAI-FEEAHKQVQ 588
Score = 37.9 bits (87), Expect = 0.012
Identities = 64/502 (12%), Positives = 127/502 (25%), Gaps = 181/502 (36%)
Query: 200 TNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL 259
T Y YKD+ + + + D +L+ K E++ I K+
Sbjct: 11 TGEHQYQYKDI---LSVFEDAFVDNFDCKDVQDMPKSILS-------KEEIDHIIMSKDA 60
Query: 260 TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
G + T E V++ + +Y+
Sbjct: 61 VSGTLRLFWT---------LLSKQEEM-----------------VQKFVEEVLRI-NYKF 93
Query: 320 EAGQSATFRCNAVSDPSL-------KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKS- 371
T PS+ + ++ ++ V L + ++
Sbjct: 94 LMSPIKT-EQR---QPSMMTRMYIEQRDRLY-NDNQVFA----KYNVSRLQPYLKLRQAL 144
Query: 372 SELDSGQY-----------------TCRA---QTELDF----------------IEAQAT 395
EL + C + Q ++DF +E
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
L Q+ N+T D + + S++ R K E L
Sbjct: 205 LLYQID----PNWT--SRSDHSSNI----KLRIHSIQAELRRL----LKSKPYE---NCL 247
Query: 456 IVNKGESTTTEVDKFVPASKNF-ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIP 514
+V + F N ++L ++ F++ T SL+
Sbjct: 248 LVLLNVQNAKAWNAF-----NLSCKILLTTR-----FKQVTDFLSAATT--THISLDHHS 295
Query: 515 LG-----SSAFYLKWVK------PEQPNGV------LMGYKIK--------YQSVKGTKV 549
+ + LK++ P + ++ I+ ++ V K+
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 550 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY--VPFKNPDN 607
T + L LEP AE + +F F P +
Sbjct: 356 T------------TIIESSLNVLEP-----------------AEYRKMFDRLSVF--PPS 384
Query: 608 VEGRGSTPNNLVISWTAMPEIE 629
L + W + + +
Sbjct: 385 AH---IPTILLSLIWFDVIKSD 403
Score = 37.9 bits (87), Expect = 0.012
Identities = 40/276 (14%), Positives = 77/276 (27%), Gaps = 69/276 (25%)
Query: 434 HFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493
F V + KD + + ++ + E+D + + + L E
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSIL------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 494 IIS-FVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPL 552
++ FV E V + N YK +K + P
Sbjct: 78 MVQKFV--EEV------------------------LRIN-----YKFLMSPIKTEQRQPS 106
Query: 553 LERLPYIS--DPTTTSAKLAGLEPSTKY---RIHLAGYTKAGDGAES----KYLFYVPFK 603
+ YI D + KY R+ Y K K +
Sbjct: 107 MMTRMYIEQRDRLYNDN-----QVFAKYNVSRLQP--YLKLRQALLELRPAKNVL----- 154
Query: 604 NPDNVEG-RGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSE 662
++G GS + + +++ ++IFW N + + VL+ Q
Sbjct: 155 ----IDGVLGSGKTWVALDVCLSYKVQCK---MDFKIFWL--NLKNCNSPETVLEMLQKL 205
Query: 663 LVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNK 698
L + + + +R L+ +K
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS 566
++L + + L W P+ + I+YQ + E + + S
Sbjct: 5 PKNLVVSEVTEDSLRLSW---TAPDAAFDSFMIQYQESEKVG-----EAINLTVPGSERS 56
Query: 567 AKLAGLEPSTKYRIHLAGYTKAGDG 591
L GL+P T+Y + + G
Sbjct: 57 YDLTGLKPGTEYTVSIYGVKGGHRS 81
Score = 40.1 bits (94), Expect = 2e-04
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
L AP N + +V +SW F + +Q + E + G L V G
Sbjct: 2 LPAPKNLVVSEV-TEDSLRLSWTAPD-----AAFDSFMIQ-YQESEKVGEAINLTVP-GS 53
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
+ ++ P ++ + G + P F T
Sbjct: 54 ERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLS-AEFTT 90
Score = 27.4 bits (61), Expect = 5.9
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
+ E + G L V G + ++ P ++ + G + P F T
Sbjct: 35 QYQESEKVGEAINLTVP-GSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLS-AEFTT 90
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 48.0 bits (114), Expect = 2e-06
Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 20/164 (12%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIH------NQKELTGGRYTILETGDLKITDVAFADSGEYT 286
+TV+L C E +H + L G + + + I+ + +G Y
Sbjct: 22 EETVILQCW--SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79
Query: 287 CFARNKLGTAQGSGS-----LTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLK 338
C+ Q S + + ++ QP V AG++ T C S S
Sbjct: 80 CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGP-TVLAGENVTLSC---SSRSSY 135
Query: 339 LSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR 382
R E + + + G Y C
Sbjct: 136 DMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCF 179
Score = 43.7 bits (103), Expect = 6e-05
Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 13/157 (8%)
Query: 51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCE-- 105
V L C + + ++G+ + I + G + I + G+Y C
Sbjct: 25 VILQC-WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83
Query: 106 --VSNGVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
S A S +D+ + P + +P E VT C +S H
Sbjct: 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSC-SSRSSYDMYHLS 141
Query: 161 HNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
G+ + P + G + + G Y C
Sbjct: 142 REGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Score = 38.4 bits (89), Expect = 0.004
Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 26/186 (13%)
Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
V P P + EETV +C + + G G ++
Sbjct: 5 VHRKPSLLAHPGPL-VKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSK 62
Query: 182 --ITIENLRKSDTGNYGCNATNSLGYVYK-------DVYVNVLAHAPEITEAPKDEYTVD 232
+I + + G Y C + + D+ + L P ++ P
Sbjct: 63 ANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLA- 121
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA--------DSGE 284
G+ V L+C + + H +E G + K+ A G
Sbjct: 122 GENVTLSCS----SRSSYDMYHLSRE--GEAHERRLPAGPKVNGTFQADFPLGPATHGGT 175
Query: 285 YTCFAR 290
Y CF
Sbjct: 176 YRCFGS 181
Score = 33.0 bits (75), Expect = 0.25
Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 20/158 (12%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
V++ ++ +C + + L + + ++++ ++
Sbjct: 19 VKSEETVILQCWS----DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDL 74
Query: 376 SGQYTCRAQTELDFIEAQA-----TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQS 430
+G Y C + A + + E PS V++ V +
Sbjct: 75 AGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSL-----SAQPGPTVLAGENV---T 126
Query: 431 LRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVD 468
L R ++GE R L + T + D
Sbjct: 127 LSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQAD 164
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 45.9 bits (109), Expect = 3e-06
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 7/116 (6%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGE 449
T P ++ I + ++W+P P+ G Y V+ +G
Sbjct: 7 GVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDP--PKDNGGATINKYVVEMAEGSNGN 64
Query: 450 GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
++ G + D+ P RV + SE + TP V G
Sbjct: 65 KWE---MIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPA-VSG 116
Score = 39.3 bits (92), Expect = 6e-04
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 8/109 (7%)
Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIP-LGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVK 545
+ S ++ F T PG + S +F + W P+ G + Y ++
Sbjct: 2 SSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGS 61
Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ I T L P YR+ + + G A S
Sbjct: 62 NG------NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS 104
Score = 33.6 bits (77), Expect = 0.052
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 695 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
++ G + D+ P RV + SE + TP
Sbjct: 68 MIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPA 113
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 45.1 bits (107), Expect = 4e-06
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLP 557
+ P + + P S+A +++ +PE GV ++ YK ++++V
Sbjct: 2 SHMDTPSSPSIDQVEPYSSTAQ-VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 60
Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ GL+P T Y + LA G G S
Sbjct: 61 --EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEIS 95
Score = 35.4 bits (82), Expect = 0.009
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 419 AVVSWNPVSPQSLRGHF-RGYKVQTWTEKDGEGSIRELIVNK-GESTTTEVDKFVPASK- 475
A V ++ P++ G YK + + + + + P +
Sbjct: 22 AQVQFDE--PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY 79
Query: 476 NFARVLAFNGAYNGPPSEIISFVT 499
R+ A NG G S F T
Sbjct: 80 AV-RLAALNGKGLGEISAASEFKT 102
Score = 28.5 bits (64), Expect = 2.3
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 699 GESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEIISFVT 738
+ P + R+ A NG G S F T
Sbjct: 63 SMEGIVTIVGLKPETTYAV-RLAALNGKGLGEISAASEFKT 102
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 45.4 bits (107), Expect = 4e-06
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 19/106 (17%)
Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-----------GGR 263
+ + +D DG+ V + + + + W N +EL R
Sbjct: 5 SSGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTWFLNGEELKSNEPEGQVEPGALR 62
Query: 264 YTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
Y I + G L + V DSG F Q S +LT++E
Sbjct: 63 YRIEQKGLQHRLILHAVKHQDSGALVGF---SCPGVQDSAALTIQE 105
Score = 44.6 bits (105), Expect = 9e-06
Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI--------D 351
GS + ED +V G+ A F D S + W E +
Sbjct: 1 GSSGSSGTARLVAGLEDVQVYDGEDAVFSL----DLSTIIQGTWFLNGEELKSNEPEGQV 56
Query: 352 FESEPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
R+ + L + DSG + ++ A LT+Q PS+
Sbjct: 57 EPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG---VQDSAALTIQES-SGPSS 111
Score = 37.7 bits (87), Expect = 0.002
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 135 INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-----------T 183
+ + E F S + W NG+ + P + + G R
Sbjct: 18 VQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLI 75
Query: 184 IENLRKSDTGNYGCNATNSL 203
+ ++ D+G + +
Sbjct: 76 LHAVKHQDSGALVGFSCPGV 95
Score = 36.1 bits (83), Expect = 0.006
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 16/72 (22%)
Query: 67 WSKDGVPINPSDRISQGNYGK------------SLIIKHVEFSDQGSYTCEVSNGVGEAK 114
W +G + ++ Q G LI+ V+ D G+ GV
Sbjct: 40 WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV---- 95
Query: 115 SYSIDLSVLAAP 126
S L++ +
Sbjct: 96 QDSAALTIQESS 107
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 47.7 bits (113), Expect = 4e-06
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 17/168 (10%)
Query: 141 ETVTFECKASGLPEPE---IHWVHNGKPISQAPPNPRRKVGPN------RITIENLRKSD 191
C LP + W + P ++ + +
Sbjct: 29 LDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLS 88
Query: 192 TGNYGCNATNSLGYVYKDVYVNVLAHAPEITE----APKDEYTVDGKTVVLTCRVFG-AP 246
+ C + + V AP E + V L+C V G P
Sbjct: 89 GERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPE-ELSLSRVTLSCLVRGFRP 147
Query: 247 KP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
+ E+ W+ + + + + + T G+ T F +K+
Sbjct: 148 RDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGD-TFFVYSKM 194
Score = 42.7 bits (100), Expect = 2e-04
Identities = 22/192 (11%), Positives = 45/192 (23%), Gaps = 33/192 (17%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPE---VNWIHNQKELTGGRYTILE---------TGDL 272
P L C V P V W + +L+ + +
Sbjct: 20 PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAV 79
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ----PEDYEVEAGQSATFR 328
++ + +TC +++ S S+ E + T
Sbjct: 80 PVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLS 139
Query: 329 CNAVSDPSLKLSIVWLRGSEPID-------------FESEPRFVQSNDYS----LTVTKS 371
C + I WLR + + + + ++V +
Sbjct: 140 CLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETA 199
Query: 372 SELDSGQYTCRA 383
+ C A
Sbjct: 200 KWNGGTVFACMA 211
Score = 31.9 bits (72), Expect = 0.53
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLK-LSIVWLR-GSEPIDFESEPRFVQSND-YS---- 365
P E+ A RC V+ PS LS+ W R S + + N YS
Sbjct: 19 PPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSA 78
Query: 366 LTVTKSSELDSGQYTCRAQTE 386
+ V+ L ++TC Q E
Sbjct: 79 VPVSTQDWLSGERFTCTVQHE 99
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 47.2 bits (112), Expect = 7e-06
Identities = 28/190 (14%), Positives = 49/190 (25%), Gaps = 29/190 (15%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRV----FGAPKPEVNWIHNQKELT-----------GGRYT 265
I + G T +TC V P+ +W + E+
Sbjct: 20 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR 79
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH----ITDQPEDYEVEA 321
+L I + + + + C + A S++ E T + E
Sbjct: 80 S--VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMT 137
Query: 322 GQSATFRCNAVSDPSLK-LSIVWLRGSEPIDFESEPRFVQSND--YS----LTVTKSSEL 374
+ C V + W +P + D Y L V K +
Sbjct: 138 QSQVSITC-MVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQ 196
Query: 375 DSGQYTCRAQ 384
+TC
Sbjct: 197 QGNTFTCSVL 206
Score = 44.1 bits (104), Expect = 7e-05
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 67 WSKDGVPIN-----PSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNG---VGEAKSY 116
W D V ++ ++ S L I ++ + ++ C+V++G KS
Sbjct: 55 WFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSI 114
Query: 117 SIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGKPISQ 168
S P + V+ C G P W NG+P
Sbjct: 115 SKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQEN 168
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 47.6 bits (112), Expect = 8e-06
Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 16/204 (7%)
Query: 388 DFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKD 447
+E + P A + I + SW P S + Y + W
Sbjct: 84 ILVEKCISPPEGDPESAVTELQCI-WHNLSYMKCSWLPGRNTSPDTN---YTLYYWHRSL 139
Query: 448 GEGSIRELIVNKGESTTTEVDKFVPASKNF----ARVLAFNGAYNGPPSEIISFVTPEGV 503
+ E I +G+ D +F +++ + A PS I +T
Sbjct: 140 EKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVK 199
Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT-------KVGPLLERL 556
P + + Y++W P+ + Y+++ + + +
Sbjct: 200 PDPPHIK-NLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPE 258
Query: 557 PYISDPTTTSAKLAGLEPSTKYRI 580
+ T+ + G+ P T +
Sbjct: 259 FERNVENTSCFMVPGVLPDTLNTV 282
Score = 34.1 bits (77), Expect = 0.14
Identities = 17/185 (9%), Positives = 48/185 (25%), Gaps = 26/185 (14%)
Query: 507 VQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 565
V +L W PE + + Y + ++ P T
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFG-----------DKQDKKIAPETR 55
Query: 566 SAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV------PFKNPDNVEGRGSTPNNLV 619
+ L ++ T + + P ++ + +
Sbjct: 56 RSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMK 115
Query: 620 ISWTAMPEIEHNAPHFKYRIFWRRHNTGEA-----WNQDDVLDWRQSELVLANQPTFQPY 674
SW P + Y +++ + + ++ +L +F+ +
Sbjct: 116 CSWL--PGRNTSPDT-NYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQH 172
Query: 675 EIKVV 679
++++
Sbjct: 173 SVQIM 177
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 48.2 bits (113), Expect = 8e-06
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFADS 282
+ + G T L C V W L +Y ++ +L I +++ DS
Sbjct: 540 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDS 598
Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
G Y C + + + + K + P
Sbjct: 599 GVYQCLSEER-VKNKTVFQVVAKHVLEVKVVP 629
Score = 42.1 bits (97), Expect = 6e-04
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
T +C + W + P +G + I NL + D+G Y C +
Sbjct: 550 TAELKCSQKS-NLARVFWKFQNGVLKAESPK-YGLMGRKNLLIFNLSEGDSGVYQCLSEE 607
Query: 202 SLGYVYKDVYVNVLAHAPEITEAPK 226
V V H E+ PK
Sbjct: 608 R-VKNKTVFQV-VAKHVLEVKVVPK 630
Score = 40.1 bits (92), Expect = 0.003
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 307 HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
+ + G +A +C+ S+ + + W + + ES + +L
Sbjct: 533 PDKSKGSYRQHFFKHGGTAELKCSQKSNLA---RVFWKFQNGVLKAESPKYGLMGRK-NL 588
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
+ SE DSG Y C + E + + + LE
Sbjct: 589 LIFNLSEGDSGVYQCLS-EERVKNKTVFQVVAKHVLEVK 626
Score = 36.3 bits (82), Expect = 0.037
Identities = 19/118 (16%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Query: 28 QNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK 87
P + + ++ EL C + L + W + K
Sbjct: 528 DASVCPDKSKGSYRQHFFKHGGTAELKC-SQKSNLARVFWKFQNGVLKAESPKYGLMGRK 586
Query: 88 SLIIKHVEFSDQGSYTCE-VSNGVGE---AKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
+L+I ++ D G Y C + L V P V P E
Sbjct: 587 NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEG 644
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 43.5 bits (102), Expect = 8e-06
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 223 EAPKDEYTVD--GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA 280
+A EY V G +V LTC + + W N +EL L D +
Sbjct: 2 DAENIEYKVSISGTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVE---- 55
Query: 281 DSGEYTCFARNK 292
DSG Y C+
Sbjct: 56 DSGYYVCYTPAS 67
Score = 29.6 bits (66), Expect = 0.72
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL-RKSDTGNYGCNAT 200
+V C + + W NG+ + Q + +++ D+G Y C
Sbjct: 16 SVELTCPLD--SDENLKWEKNGQELPQ--------KHDKHLVLQDFSEVEDSGYYVCYTP 65
Query: 201 NSLGYVY 207
S Y
Sbjct: 66 ASNKNTY 72
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 47.1 bits (112), Expect = 9e-06
Identities = 36/241 (14%), Positives = 66/241 (27%), Gaps = 67/241 (27%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWV----------------HNGKPISQAPPNPRR 175
+ + + C + IHW + + ++ +P +
Sbjct: 9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGK 68
Query: 176 KVGPN------RITIENLRKSDTGNYGCNATNSLGYVYKD-------------------V 210
R+ + NL ++D+G Y C + Y
Sbjct: 69 YDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKK 128
Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIH--------------- 254
A ++T+A K V L C + W
Sbjct: 129 DAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGS 188
Query: 255 NQKELTGGRYTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQ----GSG-SLTV 304
+++ GRY++ L I+ + DS +Y C L A G G +TV
Sbjct: 189 DEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTV 248
Query: 305 K 305
+
Sbjct: 249 E 249
Score = 34.0 bits (78), Expect = 0.13
Identities = 30/226 (13%), Positives = 59/226 (26%), Gaps = 63/226 (27%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI---------------------HNQ 256
+ + K G + +TC + ++W +
Sbjct: 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLE 61
Query: 257 KELTGGRYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH--- 309
++ G+Y + + + ++ DSG Y C ++ + GS T T
Sbjct: 62 SGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQG 121
Query: 310 -----------------ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR---GSEP 349
+T + ++ T C + I W + E
Sbjct: 122 SADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWW-SYYIFWYKRLPSKEM 180
Query: 350 I----DFESEPRFVQS----------NDYSLTVTKSSELDSGQYTC 381
I E +LT++ DS +Y C
Sbjct: 181 IFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFC 226
Score = 31.3 bits (71), Expect = 0.85
Identities = 27/162 (16%), Positives = 44/162 (27%), Gaps = 41/162 (25%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV-------------------LAAPYF 128
+I++++ +D G Y C + K + S+ A
Sbjct: 80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKV 139
Query: 129 TVEPEFINAAEEETVTFECKASG-LPEPEIHWVH---NGKP---ISQAPPNPRRKVGPNR 181
T ++ + VT C I W + + I Q K R
Sbjct: 140 TQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAK--SGR 197
Query: 182 I-------------TIENLRKSDTGNYGCNATNSLGYVYKDV 210
TI L+ D+ Y C SL K +
Sbjct: 198 YSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLI 239
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 46.2 bits (109), Expect = 1e-05
Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 24/202 (11%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQ-TWTEKDGEGSIRELIVNKG 460
L AP + + + K ++ W+PV G Y V+ + S + +
Sbjct: 7 LPAPQQLS-VLSTNMK-HLLMWSPVIAP---GETVYYSVEYQGEYESLYTSHIWIPSSWC 61
Query: 461 ESTTTEV----DKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
T D RV A G+ S + + T +E G
Sbjct: 62 SLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDG 121
Query: 517 SS-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
L+ + P+ + + Y + P E + L +EP
Sbjct: 122 FHLVIELEDLGPQ------FEFLVAYW-----RREPGAEEHVKMVRSGGIPVHLETMEPG 170
Query: 576 TKYRIHLAGYTKAGD--GAESK 595
Y + + KA A S+
Sbjct: 171 AAYCVKAQTFVKAIGRYSAFSQ 192
Score = 33.1 bits (75), Expect = 0.19
Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 11/161 (6%)
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLL-ERLPYISDPTTTSAKL-AGLEPSTKYR 579
L W P G + Y ++YQ + + + S + + + Y
Sbjct: 24 LMW-SPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYN 82
Query: 580 IHLAGYTKAGDGAESK-YLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYR 638
+ + + A S + G T + + E+E P F++
Sbjct: 83 LRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHLVI----ELEDLGPQFEFL 138
Query: 639 I-FWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKV 678
+ +WRR E + ++ + L Y +K
Sbjct: 139 VAYWRREPGAEEHVK--MVRSGGIPVHLETMEPGAAYCVKA 177
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 44.3 bits (105), Expect = 1e-05
Identities = 21/131 (16%), Positives = 33/131 (25%), Gaps = 11/131 (8%)
Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
+ S VP LE + L W + N + + I+Y+
Sbjct: 2 SSGSSGPTP-APVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYE----D 56
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV------P 601
+ T + L P Y + G S+ P
Sbjct: 57 AMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP 116
Query: 602 FKNPDNVEGRG 612
KNP + G
Sbjct: 117 DKNPTSGPSSG 127
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 7/115 (6%)
Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
V P + L K +SW P + ++ +
Sbjct: 7 GPTPAPVYDVPNPPFDLELTD-QLDKSVQLSWTP--GDDNNSPITKFIIEYED-AMHKPG 62
Query: 452 IRELIVNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEIIS-FVTPEGVP 504
+ + TT P +F RV+A N PSE ++T P
Sbjct: 63 LWHHQTEVSGTQTTAQLNLSPYVNYSF-RVMAVNSIGKSLPSEASEQYLTKASEP 116
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 47.6 bits (113), Expect = 1e-05
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 18/149 (12%)
Query: 42 KEVALRNKKVELFCIF-GGTPLPQTI---WSKDGVPIN-----PSDRISQGNYGKS--LI 90
K+ + ++ E+ C+ + + W DGV ++ P + Y L
Sbjct: 258 KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT 317
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE----TVTFE 146
+ H ++ + Y C+VSN +S + + + +E V+
Sbjct: 318 VLHQDWLNGKEYKCKVSNK-ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLT 376
Query: 147 CKASGL-PEP-EIHWVHNGKPISQAPPNP 173
C G P + W NG+P + P
Sbjct: 377 CLVKGFYPSDIAVEWESNGQPENNYKTTP 405
Score = 41.4 bits (97), Expect = 0.001
Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 24/184 (13%)
Query: 224 APKDEYTVDGKTVVLTCRVFG-APKP---EVNWIHNQKELTGG---------RYTILETG 270
PKD + +T +TC V + + + NW + E+ T
Sbjct: 256 KPKDTLMI-SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS 314
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH----ITDQPEDYEVEAGQSAT 326
L + + + EY C NK A +++ + + P + +
Sbjct: 315 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVS 374
Query: 327 FRCNAVSDPSLKLSIVWLRGSEPI-DFESEPRFVQSND----YS-LTVTKSSELDSGQYT 380
C +++ W +P ++++ P + S+ YS LTV KS ++
Sbjct: 375 LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS 434
Query: 381 CRAQ 384
C
Sbjct: 435 CSVM 438
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 45.9 bits (108), Expect = 1e-05
Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 22/200 (11%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
+P P F + + W P + L ++ + E + I
Sbjct: 2 LPPGKPEIFKCRSP-NKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECP--DYITGG 58
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEII----SFVTPEGVPGTVQSLEAIPL 515
S V A N + E+ V P+ ++
Sbjct: 59 PNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPED 118
Query: 516 GSSAFYLKWVKPE----QPNGVLMGYKIKYQSVKGT--KVGPLLERLPYISDPTTTSAKL 569
++KW P + + Y+I+ + K ++ T K+
Sbjct: 119 RKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI---------HFAGQQTEFKI 169
Query: 570 AGLEPSTKYRIHLAGYTKAG 589
L P KY + + G
Sbjct: 170 LSLHPGQKYLVQVRCKPDHG 189
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 45.7 bits (108), Expect = 2e-05
Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 25/181 (13%)
Query: 228 EYTVDGKTVVLTCRVFG-APKP---EVNWIHNQKELTGGRYTILETGD---------LKI 274
+ + T +TC V + +++W N E+ + L I
Sbjct: 21 DVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPI 80
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ----PEDYEVEAGQSATFRCN 330
+ E+ C NK + +++ + Q P E + + + C
Sbjct: 81 QHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTC- 139
Query: 331 AVSDPSLK-LSIVWLRGSEPIDFESEPRFVQSND--YS----LTVTKSSELDSGQYTCRA 383
V + +S+ W + + V +D Y L + S + ++C
Sbjct: 140 LVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNV 199
Query: 384 Q 384
+
Sbjct: 200 R 200
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 46.5 bits (110), Expect = 2e-05
Identities = 38/236 (16%), Positives = 66/236 (27%), Gaps = 38/236 (16%)
Query: 67 WSKDGVPIN-----PSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119
WS+ G + PS S Y S L + + S TC V + ++ ++
Sbjct: 163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVP 222
Query: 120 LSVLAAPY-------------------FTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
V + P P + C +GL +
Sbjct: 223 CPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTF 282
Query: 161 HNGKPISQAPPNPRRKVGPN-------RITIENLRKSDTGNYGCNATN--SLGYVYKDVY 211
++ + + + + C A S + +
Sbjct: 283 TWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLS 342
Query: 212 VNVLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRY 264
+ PE+ P E + V LTC G +PK V W+ +EL +Y
Sbjct: 343 KSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKY 398
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 45.7 bits (108), Expect = 2e-05
Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 13/179 (7%)
Query: 100 GSYTCEVSNGV--GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
G+ +C+ ++ A SV P + I+ E T + PE +
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKF 60
Query: 158 HWVHNGKPISQAPPNPRRKVGPNRI------TIENLRKSDTGNYGCNATNSLGYVYKDVY 211
+W +G + A PR + + T+ + + Y C +N +
Sbjct: 61 NWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKT 120
Query: 212 VNVL---AHAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
++ P++ P + V LTC V G P V W N + + T
Sbjct: 121 ISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKAT 179
Score = 44.2 bits (104), Expect = 6e-05
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 29/176 (16%)
Query: 233 GKTVVLTCRVFG-APKP---EVNWIHNQKELTGGRYTILETGD---------LKITDVAF 279
+T +TC V + + + NW + E+ + E L + +
Sbjct: 39 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW 98
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY------EVEAGQSATFRCNAVS 333
+ EY C NK T+ + +P+ Y + + C V
Sbjct: 99 LNGKEYKCKVSNK--ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTC-LVK 155
Query: 334 DPSLK-LSIVWLRGSEPIDFESEPRFVQSND-----YS-LTVTKSSELDSGQYTCR 382
+++ W +P + V +D YS LTV KS ++C
Sbjct: 156 GFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCS 211
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 43.3 bits (102), Expect = 2e-05
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 509 SLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAK 568
S+ P +F L K + ++ Y +KY+S +
Sbjct: 13 SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKK-----VQGNKDHII 67
Query: 569 LAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP 601
L L+ + Y + + + G + Y F +P
Sbjct: 68 LEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 100
Score = 34.4 bits (79), Expect = 0.024
Identities = 18/107 (16%), Positives = 26/107 (24%), Gaps = 7/107 (6%)
Query: 395 TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE 454
PS Q K +S Y V+ + KD E E
Sbjct: 2 AEASMREPSPPSI--HGQPSSGKSFKLSITK--QDDGGAPILEYIVK-YRSKDKEDQWLE 56
Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
V G ++ ++ A N P+ F P
Sbjct: 57 KKVQ-GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTV-YEFSMPP 101
Score = 32.9 bits (75), Expect = 0.080
Identities = 14/76 (18%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 604 NPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSEL 663
+P ++ G+ S+ + +S T + + AP +Y + +R + + W + V + +
Sbjct: 10 SPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKV-QGNKDHI 66
Query: 664 VLANQPTFQPYEIKVV 679
+L + YE+++
Sbjct: 67 ILEHLQWTMGYEVQIT 82
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 45.2 bits (106), Expect = 2e-05
Identities = 25/201 (12%), Positives = 51/201 (25%), Gaps = 11/201 (5%)
Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
P Q + ++ W P ++L G+ Y VQ + +E
Sbjct: 3 QSTHESLKPQRVQ-FQSRNFH-NILQWQP--GRALTGNSSVYFVQYKIYGQRQWKNKEDC 58
Query: 457 VN-KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPL 515
+ S + + RV A + S F + +
Sbjct: 59 WGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQV 118
Query: 516 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLL-----ERLPYISDPTTTSAKLA 570
S + P P + + + E+ + + + ++
Sbjct: 119 NGSL-LVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIE 177
Query: 571 GLEPSTKYRIHLAGYTKAGDG 591
L P + Y + Y D
Sbjct: 178 ALTPHSSYCVVAEIYQPMLDR 198
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 44.9 bits (106), Expect = 3e-05
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 29/177 (16%)
Query: 233 GKTVVLTCRVFG-APKPE---VNWIHNQKELTGGRYTILETGD---------LKITDVAF 279
+T +TC V + + NW + E+ + E L + +
Sbjct: 18 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW 77
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY------EVEAGQSATFRCNAVS 333
+ EY C NK T+ + +P+ Y + + C V
Sbjct: 78 LNGKEYKCKVSNK--ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTC-LVK 134
Query: 334 DPSLK-LSIVWLRGSEPIDFE--SEPRFVQSNDYS----LTVTKSSELDSGQYTCRA 383
+++ W +P + + P + LTV KS ++C
Sbjct: 135 GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV 191
Score = 41.0 bits (96), Expect = 6e-04
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 140 EETVTFECKASGL----PEPEIHWVHNGKPISQAPPNPRRKVGPNR------ITIENLRK 189
T C + PE + +W +G + A PR + + +T+ +
Sbjct: 18 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW 77
Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI----TEAPKDEYTVDGKTVVLTCRVFG- 244
+ Y C +N + ++ P T P + + V LTC V G
Sbjct: 78 LNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGF 136
Query: 245 APKP-EVNWIHNQKELTGGRYT 265
P V W N + + T
Sbjct: 137 YPSDIAVEWESNGQPENNYKTT 158
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 45.2 bits (106), Expect = 3e-05
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 14/153 (9%)
Query: 358 FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAK 417
F+++ + L + + G+ + T LT V EAP + +++ A
Sbjct: 77 FIETKKFLLIGKSNICVKVGEKS---LTCKKI-----DLTTIVKPEAPFDLSVVYREGAN 128
Query: 418 KAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF 477
VV++N Q + V EKD + + T K PA+
Sbjct: 129 DFVVTFNTSHLQKKYVKVLMHDVAYRQEKD--ENKWTHVNLSSTKLTLLQRKLQPAAMYE 186
Query: 478 ARVLA-FNGAYNGPPSE---IISFVTPEGVPGT 506
+V + + + G SE F TPE +
Sbjct: 187 IKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSS 219
Score = 30.9 bits (69), Expect = 1.2
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 613 STPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQ 672
N+ V+++ + + + +R+ W ++ + + L QP
Sbjct: 125 EGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQP-AA 183
Query: 673 PYEIKV 678
YEIKV
Sbjct: 184 MYEIKV 189
Score = 29.8 bits (66), Expect = 2.6
Identities = 28/223 (12%), Positives = 59/223 (26%), Gaps = 42/223 (18%)
Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKA 419
+S + +ELD ++C +Q E++ +Q +LT + L I
Sbjct: 5 ESGYAQNGDLEDAELDDYSFSCYSQLEVN--GSQHSLTCAFEDPDVNTTNLEFEICGALV 62
Query: 420 VVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 479
V K + + I K + K
Sbjct: 63 EVKCLNFRKLQEIYFIETKKFLLIGKSN--------ICVKVGEKSLTCKKIDL------- 107
Query: 480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVL--MGY 537
+ I+ P + + G++ F + + + + +
Sbjct: 108 ------------TTIVKPEAPFDLSVVYRE------GANDFVVTFNTSHLQKKYVKVLMH 149
Query: 538 KIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
+ Y+ K + T + L+P+ Y I
Sbjct: 150 DVAYRQEKDEN-----KWTHVNLSSTKLTLLQRKLQPAAMYEI 187
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 43.0 bits (101), Expect = 3e-05
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 24/104 (23%)
Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCN-AVSDPSLKL-SIVWLRGSEP------- 349
G+L V QP + G SA C+ S L + S+ W R
Sbjct: 6 QGALWVS-------QPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRN 58
Query: 350 --------IDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
+ + RF+ + L + D+ Y CR +
Sbjct: 59 GTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEV 102
Score = 34.2 bits (78), Expect = 0.043
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 19/85 (22%)
Query: 132 PEFINAAEEETVTFECK----ASGLPEPEIHW----VHNGKPISQAPPNPRRKVGPNR-- 181
P I E + C L + W V GK + P R ++ P
Sbjct: 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASS 73
Query: 182 ---------ITIENLRKSDTGNYGC 197
+ I ++R D Y C
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVC 98
Score = 33.4 bits (76), Expect = 0.073
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 26/107 (24%)
Query: 225 PKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGGRYTILETGD------------ 271
P + T++G + L C + + + ++ +
Sbjct: 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASS 73
Query: 272 ---------LKITDVAFADSGEYTCFARNKLGTAQGSGS---LTVKE 306
L I DV D+ Y C LG G+G+ L V++
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVVEK 119
Score = 32.2 bits (73), Expect = 0.15
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 58 GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
G + G + ++ L I+ V D Y C V
Sbjct: 52 PGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 46.1 bits (108), Expect = 3e-05
Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 12/133 (9%)
Query: 68 SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY 127
+ + + + + V+ +G+Y + + + +++L+V P
Sbjct: 235 AVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQV-TLELAVYKPPK 293
Query: 128 FTVEPE--FINAAEEETVTFECKASG---LPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
++ P A E C S E+ W G P ++ +
Sbjct: 294 VSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQ------KAEGQR 347
Query: 183 TIENLRKSDTGNY 195
+ LR G+
Sbjct: 348 WLSALRHHSDGSV 360
Score = 44.2 bits (103), Expect = 1e-04
Identities = 19/130 (14%), Positives = 27/130 (20%), Gaps = 17/130 (13%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE--HTHITDQPEDYEVEAGQSATFRC 329
+ V G Y Q + L V + + C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315
Query: 330 NAVS-DPSLKLSIVWLRGSEPIDFESEP-------RFVQSND--YS----LTVTKSSELD 375
PS L + W P + +D S L +
Sbjct: 316 LVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQ 375
Query: 376 SGQ-YTCRAQ 384
G Y CR
Sbjct: 376 HGARYACRIH 385
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 42.6 bits (100), Expect = 3e-05
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK-------VGPLLE 554
G L + L+W+ P ++ +K++Y+ V K P +
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 555 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
+ +A + L+P YR + D ES
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKES 100
Score = 30.3 bits (68), Expect = 0.80
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 16/105 (15%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG--------- 450
P+ + ++ + ++ W P++ +KVQ +
Sbjct: 2 ST-YPPTPPNVTRL-SDESVMLRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP 57
Query: 451 -SIRELIVNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSE 493
+ G+S T V P F R+LA + S
Sbjct: 58 YGKPKWNSELGKSFTASVTDLKPQHTYRF-RILAVYSNNDNKESN 101
Score = 27.2 bits (60), Expect = 9.6
Identities = 5/80 (6%), Positives = 20/80 (25%), Gaps = 2/80 (2%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P + ++++ W P +++ +R + W +
Sbjct: 6 PTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 63
Query: 665 LANQPTFQPYEIKVVQTWTE 684
+ + ++
Sbjct: 64 NSELGKSFTASVTDLKPQHT 83
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 44.9 bits (106), Expect = 4e-05
Identities = 24/166 (14%), Positives = 41/166 (24%), Gaps = 32/166 (19%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWV-------------HNGKPISQAPPNPRRKVG 178
P + + V C P + W + P
Sbjct: 8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYL 67
Query: 179 PNR-----ITIENLRKSDTGNYGCNATNSLGYVYKDVY------VNVLAHAPEITE---- 223
R + ++ S C ++ +Y + VL +
Sbjct: 68 ATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVA 127
Query: 224 --APKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
P + + L C G P E++W N KE+ G T
Sbjct: 128 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVST 173
Score = 31.8 bits (72), Expect = 0.59
Identities = 36/246 (14%), Positives = 68/246 (27%), Gaps = 57/246 (23%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK-----ELTG-------------- 261
+ + P+ G+ V L C + + P ++W Q +
Sbjct: 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQ-QDLQKQLQWLFTLRSPGDKEVKSLP 62
Query: 262 GRYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQ-----GSG-SLTVKEHTHITD 312
G + L++ + C + T G G LTV E
Sbjct: 63 GADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVF 122
Query: 313 QPEDY-------EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID--------FESEPR 357
PE E+ Q AT C A + + W + + E
Sbjct: 123 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQP 182
Query: 358 FVQSNDYS----LTVTKSS-ELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQ 412
+ + Y+ L V+ + + + C+ Q L+ + Q
Sbjct: 183 ALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY--------GLSENDEWTQDRAKPVTQ 234
Query: 413 VIDAKK 418
++ A+
Sbjct: 235 IVSAEA 240
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 42.7 bits (101), Expect = 5e-05
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 391 EAQATLTVQVPLEAPSNFTL-IQVIDAKKAVVSWNPVSPQSLRGHF--RGYKVQTWTEKD 447
A L V+ AP + + ++ + ++W P G+ Y ++ E +
Sbjct: 7 GRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTK--PFD--GNSPLIRYILEMS-ENN 61
Query: 448 GEGSIRELIVNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEIISFV-TPEGVP 504
++ V+ ++T+ V VPA F R+ A N G S+ V PE P
Sbjct: 62 APWTVLLASVD-PKATSVTVKGLVPARSYQF-RLCAVNDVGKGQFSKDTERVSLPESGP 118
Score = 33.5 bits (77), Expect = 0.065
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 491 PSEIISFVTPEGVPG--TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
S + + +P + A L W KP N L+ Y ++
Sbjct: 5 SSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPW 64
Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
L DP TS + GL P+ Y+ L G G SK
Sbjct: 65 -----TVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSK 106
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 42.6 bits (100), Expect = 5e-05
Identities = 15/112 (13%), Positives = 28/112 (25%), Gaps = 17/112 (15%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGK-----------PISQAPPNPRR 175
+ VT S + + W + ++ R
Sbjct: 7 GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRV 66
Query: 176 KVGPN--RITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNVLAH--APEIT 222
++ P + I ++K D Y G + + VL P I
Sbjct: 67 RLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIK 118
Score = 41.4 bits (97), Expect = 1e-04
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 67 WSKDGVPINPS---DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV- 122
W S R+ +L I V+ D +Y V G + + I L V
Sbjct: 50 WDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
Query: 123 --LAAPYFTVE 131
+ P +E
Sbjct: 110 DPVPKPVIKIE 120
Score = 41.4 bits (97), Expect = 1e-04
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE--------SEPRF- 358
+ V +G + T + + K + W + E E +F
Sbjct: 5 SSGQGHLVHMTVVSGSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFESKFK 63
Query: 359 ----VQSNDYSLTVTKSSELDSGQYTCRA-QTELDFIEAQATLTVQVPLEAP 405
+ +L ++K + D+ Y R + + E + L V P+ P
Sbjct: 64 GRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
Score = 38.7 bits (90), Expect = 0.001
Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 18/110 (16%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT-------------- 260
+ V G V L ++ W + +
Sbjct: 2 SSGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESK 61
Query: 261 -GGRYTI-LETGDLKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEH 307
GR + ++G L I+ V D+ Y K G Q L V +
Sbjct: 62 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDP 111
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 42.2 bits (99), Expect = 5e-05
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
L P L+ V + ++ W+P P+ + GY ++ G + + G
Sbjct: 7 GLSPPRG--LVAVRTPRGVLLHWDP--PELVPKRLDGYVLEGRQGSQGWEVLDPAV--AG 60
Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
T V + R++AF G++ PS + T
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 39.1 bits (91), Expect = 6e-04
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
Query: 517 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576
L W PE L GY ++ + E L T T + GL
Sbjct: 20 PRGVLLHWDPPELVPKRLDGYVLEGRQGSQG-----WEVLDPAVAGTETELLVPGLIKDV 74
Query: 577 KYRIHLAGYTKAGDGAES 594
Y L + + S
Sbjct: 75 LYEFRLVAFAGSFVSDPS 92
Score = 32.2 bits (73), Expect = 0.14
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 699 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
G T V + R++AF G++ PS + T
Sbjct: 60 GTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVST 99
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 45.3 bits (107), Expect = 6e-05
Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 18/155 (11%)
Query: 36 QYVTRKKEVALRNKKVELFCIFGG-TPLPQTI---WSKDGVPIN-----PSDRISQGNY- 85
+ + K+ L ++ C+ + + W D V ++ P + +
Sbjct: 233 IFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFR 292
Query: 86 -GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE--- 141
+L I H ++ + + C V++ +S + I +E+
Sbjct: 293 VVSALPIMHQDWLNGKEFKCRVNSA-AFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAK 351
Query: 142 -TVTFECKASGL-PEP-EIHWVHNGKPISQAPPNP 173
V+ C + PE + W +G+
Sbjct: 352 DKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQ 386
Score = 42.6 bits (100), Expect = 3e-04
Identities = 51/305 (16%), Positives = 86/305 (28%), Gaps = 69/305 (22%)
Query: 141 ETVTFECKASG--LPEPEIHWV--HNGKPI----------SQAPPNPRRKVGPNRITI-- 184
+V CKASG IHW+ G+ + N R K ++ T+
Sbjct: 15 ASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFK---DKATLTR 71
Query: 185 -----------ENLRKSDTGNYGCNATNSLGYVYKDVYVNV---LAHAPEITEAPKDEYT 230
+L D+ Y C + Y + V V P +
Sbjct: 72 DRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAA 131
Query: 231 VDGKTVVLTCRVFG-APKP-EVNWIHNQ---------KELTGGRYTILETGDLKITDVAF 279
V L C V G P+P V W L YT+ + + +
Sbjct: 132 QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVPSSPR 189
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHT--------------HITDQPEDYEVEAGQSA 325
S TC + + + + ++ I + +
Sbjct: 190 -PSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTP 248
Query: 326 TFRCNAV--SDPSLKLSIVWLR-GSEPIDFESEPRFVQSND-YS----LTVTKSSELDSG 377
C V S ++ W E +++PR Q N + L + L+
Sbjct: 249 KVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGK 308
Query: 378 QYTCR 382
++ CR
Sbjct: 309 EFKCR 313
Score = 36.4 bits (84), Expect = 0.028
Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 44/191 (23%)
Query: 233 GKTVVLTCRVFG-------------APKPEVNWIHNQKELTG---------GRYTILETG 270
G +V ++C+ G P + WI + + T+ T
Sbjct: 14 GASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATL--TR 71
Query: 271 D-------LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY------ 317
D + ++ + DS Y C R G G+ TV + T P Y
Sbjct: 72 DRSSNTANIHLSSLTSDDSAVYYC-VREGEVPYWGQGT-TVTVSSAKTTPPSVYPLAPGS 129
Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS----LTVTKSSE 373
+ T C +++ W GS + P +QS+ Y+ +TV SS
Sbjct: 130 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP-SSP 188
Query: 374 LDSGQYTCRAQ 384
S TC
Sbjct: 189 RPSETVTCNVA 199
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 44.1 bits (104), Expect = 1e-04
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 18/149 (12%)
Query: 42 KEVALRNKKVELFCIFGG-TPLPQTI---WSKDGVPIN-----PSDRISQGNYGKS--LI 90
K+V + + + C+ + + W + V ++ L
Sbjct: 249 KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALP 308
Query: 91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE----TVTFE 146
I+H ++ + C+V+N +S + + EEE VT
Sbjct: 309 IQHQDWMSGKEFKCKVNNK-DLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLT 367
Query: 147 CKASGL-PEP-EIHWVHNGKPISQAPPNP 173
C + PE + W +NGK
Sbjct: 368 CMVTDFMPEDIYVEWTNNGKTELNYKNTE 396
Score = 40.3 bits (94), Expect = 0.002
Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 33/187 (17%)
Query: 225 PKDEYTVDGKTVVLTCRVFG----APKPEVNWIHNQKELTGGRYTILETGD--------- 271
+ + + ++TC V P +++W N E+ +
Sbjct: 247 KIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSA 306
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPED---------YEVEAG 322
L I + E+ C NK + + + E
Sbjct: 307 LPIQHQDWMSGKEFKCKVNNK-----DLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTK 361
Query: 323 QSATFRCNAVSDPSLKLSIVWLR-GSEPIDFESEPRFVQSND----YS-LTVTKSSELDS 376
+ T C + + W G +++++ + S+ YS L V K + ++
Sbjct: 362 KQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVER 421
Query: 377 GQYTCRA 383
Y+C
Sbjct: 422 NSYSCSV 428
Score = 34.5 bits (79), Expect = 0.14
Identities = 50/321 (15%), Positives = 82/321 (25%), Gaps = 88/321 (27%)
Query: 141 ETVTFECKASG--LPEPEIHWV---------------HNGKPISQAPPNPRRKVGPNRIT 183
++ C SG + ++WV + G V R T
Sbjct: 16 GSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPD-----TV-KGRFT 69
Query: 184 I-------------ENLRKSDTGNYGCNATNSLGYVYKDVY-----VNV---LAHAPEIT 222
I L+ DT Y C GY D + V V AP +
Sbjct: 70 ISRDNAKNTLYLQMSRLKSEDTAMYYC--ARHGGYYAMDYWGQGTTVTVSSAKTTAPSVY 127
Query: 223 EAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQK---------ELTGGRYTILETGD 271
G +V L C V G P+P + W L YT+ +
Sbjct: 128 PLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL--SSS 185
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE---------------- 315
+ +T S TC + + + + + T P
Sbjct: 186 VTVTSST-WPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF 244
Query: 316 ----DYEVEAGQSATFRCNAV--SDPSLKLSIVWLR-GSEPIDFESEPRFVQSND-YS-- 365
+ S C V S+ + I W E +++ N
Sbjct: 245 PPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVV 304
Query: 366 --LTVTKSSELDSGQYTCRAQ 384
L + + ++ C+
Sbjct: 305 SALPIQHQDWMSGKEFKCKVN 325
Score = 32.6 bits (74), Expect = 0.45
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 25/144 (17%)
Query: 262 GRYTILETGD-------LKITDVAFADSGEYTCFARNKLGTAQ---GSGSL-TVKEHTHI 310
GR+TI + D L+++ + D+ Y C AR+ A G G+ TV
Sbjct: 66 GRFTI--SRDNAKNTLYLQMSRLKSEDTAMYYC-ARHGGYYAMDYWGQGTTVTVSSAK-- 120
Query: 311 TDQPEDYEV------EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY 364
T P Y + G S T C +++ W GS + P +QS+ Y
Sbjct: 121 TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLY 180
Query: 365 SLT---VTKSSELDSGQYTCRAQT 385
+L+ SS S TC
Sbjct: 181 TLSSSVTVTSSTWPSQSITCNVAH 204
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 43.3 bits (101), Expect = 1e-04
Identities = 19/195 (9%), Positives = 54/195 (27%), Gaps = 17/195 (8%)
Query: 389 FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
F+ T ++ V V + + +W S + W +
Sbjct: 24 FLTTMPTDSLSVSTLPLPEVQCF-VFNVEYMNCTWQSSSE----PQPTNLTLHYWYKNSD 78
Query: 449 EGSIRE---LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
+++ + ++ ++ ++ K V + + + + +P
Sbjct: 79 NDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW 138
Query: 506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 565
++L L S L W + + + ++Y++ S
Sbjct: 139 APENLTLHKLSESQLELNWNNRFLNHCLE--HLVQYRTDWDHSW-------TEQSVDYRH 189
Query: 566 SAKLAGLEPSTKYRI 580
L ++ +Y
Sbjct: 190 KFSLPSVDGQKRYTF 204
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 40.8 bits (96), Expect = 1e-04
Identities = 23/103 (22%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF--RGYKVQTWTEKDGEGSIRELIVNKGE 461
L AK+ + W P P G Y V+ + E V +G
Sbjct: 11 PCLPPRLQGRPKAKEIQLRWGP--PLV-DGGSPISCYSVEMSPIEKDEPRE----VYQGS 63
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
V +P R+ A N GP SE T G
Sbjct: 64 EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106
Score = 35.4 bits (82), Expect = 0.011
Identities = 14/59 (23%), Positives = 17/59 (28%)
Query: 684 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGG 742
E V +G V +P R+ A N GP SE T G
Sbjct: 47 EMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGS 105
Score = 33.9 bits (78), Expect = 0.041
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 499 TPEGVPGTVQSLEAIPL-GSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERL 556
G PG + L+W P G + Y ++ ++ +
Sbjct: 4 GSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE----- 58
Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
+ + ++ L P Y L K G G S+
Sbjct: 59 --VYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSE 95
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 42.8 bits (100), Expect = 1e-04
Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 30/200 (15%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
+ P N + ++ K ++ W + + F + +D
Sbjct: 2 VPPPENVR-MNSVNFK-NILQWESPAFAKGQLTFTAQYLSYRIFQDKCMQTTL------- 52
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
T + + RV A + +I +F + ++ L +
Sbjct: 53 -TECDFSSLSKYGDHTLRVRAEFADEHSDWVQI-TFSPVDDTIIGPPGMQVEVLADC-LH 109
Query: 522 LKWVKPEQPNGVLMG----------YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAG 571
++++ P+ N Y ++Y + + P L
Sbjct: 110 MRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEK--------FQITPQYDFEVLRN 161
Query: 572 LEPSTKYRIHLAGYTKAGDG 591
LEP T Y + + G+ +
Sbjct: 162 LEPWTTYCVQVRGFLPDRNK 181
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 42.9 bits (100), Expect = 1e-04
Identities = 17/161 (10%), Positives = 45/161 (27%), Gaps = 16/161 (9%)
Query: 349 PIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNF 408
+ + + +L V + + + L AP +
Sbjct: 63 ILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFK----------PFENLRLMAPISL 112
Query: 409 TLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVD 468
++ V + + +SW ++ +T + L + + + ++
Sbjct: 113 QVVHV-ETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ-EWICLE 170
Query: 469 KFVPASKNFARVLA-FNGAYNG---PPSEIISFVTPEGVPG 505
P ++ +V P S+ ++F T G
Sbjct: 171 TLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALG 211
Score = 31.3 bits (70), Expect = 0.89
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
P +++ + ISW + H ++ G W + +L +Q +
Sbjct: 109 PISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSP--GHTWEEAPLLTLKQKQEW 166
Query: 665 LANQPTFQP---YEIKV 678
+ T P YE +V
Sbjct: 167 I-CLETLTPDTQYEFQV 182
Score = 30.9 bits (69), Expect = 1.1
Identities = 21/166 (12%), Positives = 41/166 (24%), Gaps = 13/166 (7%)
Query: 422 SWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL 481
W+ +V W ++ EL+ S + P S+ V
Sbjct: 21 VWSQDGA----LQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVD 76
Query: 482 AFN------GAYNGPPSEIISFVTPEGV-PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVL 534
I F E + SL+ + + + + W
Sbjct: 77 IVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEIS--QASHY 134
Query: 535 MGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
+++++ + E L L P T+Y
Sbjct: 135 FERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEF 180
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 41.1 bits (96), Expect = 2e-04
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 8/109 (7%)
Query: 488 NGPPSEIISF-VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVK 545
+ S + V P P + + L W ++ +++ +
Sbjct: 2 SSGSSGMEPHKVVPLSKPHPPVVGKV---THHSIELYWDLEQKEKRQGPQEQWLRFSIEE 58
Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
I T + GLEP T Y+ L + +G+ S
Sbjct: 59 EDPKMHSYGV---IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYS 104
Score = 38.0 bits (88), Expect = 0.002
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
VPL P + +V + W+ + R + ++ E++ ++
Sbjct: 14 VPLSKPHPPVVGKV-THHSIELYWDL-EQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT 71
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
G +T V+ P + R+ + + S ++S T
Sbjct: 72 GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 33.4 bits (76), Expect = 0.069
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 656 LDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKN 715
L W + P Q + E++ ++ G +T V+ P +
Sbjct: 34 LYWDLEQKEKRQGPQEQWLRFSI-----EEEDPKMHSYGVIYTGYATRHVVEGLEPRTLY 88
Query: 716 FARVLAFNGAYNGPPSEIISFVT 738
R+ + + S ++S T
Sbjct: 89 KFRLKVTSPSGEYEYSPVVSVAT 111
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 40.0 bits (94), Expect = 3e-04
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGT 547
S P ++ Y+ W P G + ++++Y+ +K
Sbjct: 3 SGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKV 61
Query: 548 KV-GPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
+P P+ S ++ GLE Y+
Sbjct: 62 GDWILATSAIP----PSRLSVEITGLEKGISYK 90
Score = 35.0 bits (81), Expect = 0.017
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 10/118 (8%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
+Q P EAP + A + V+W P + + ++V+ K
Sbjct: 7 GSQPDHGRLSPPEAPDR---PTISTASETSVYVTWIP--RGNGGFPIQSFRVEYKKLKKV 61
Query: 449 EGSIRELIVNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEI-ISFVTPEGVP 504
I + E+ F RV A N PS +V P
Sbjct: 62 GDWILATSAIPPSRLSVEITGLEKGISYKF-RVRALNMLGESEPSAPSRPYVVSGSGP 118
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 41.8 bits (97), Expect = 4e-04
Identities = 35/197 (17%), Positives = 59/197 (29%), Gaps = 11/197 (5%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN-K 459
L P+N T I+ K V+ W P P+ L+G Y VQ + + + N
Sbjct: 8 GLPKPANIT-FLSINMK-NVLQWTP--PEGLQGVKVTYTVQYFIYGQKKWLNKSECRNIN 63
Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSA 519
+ + +ARV A G +E F + S
Sbjct: 64 RTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKS- 122
Query: 520 FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP-----YISDPTTTSAKLAGLEP 574
+ PE+ + Q + + + T + L LEP
Sbjct: 123 ISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEP 182
Query: 575 STKYRIHLAGYTKAGDG 591
+T Y +H+ +
Sbjct: 183 NTLYCVHVESFVPGPPR 199
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 42.3 bits (98), Expect = 5e-04
Identities = 15/76 (19%), Positives = 19/76 (25%), Gaps = 5/76 (6%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-TI 184
+ ++ A C W H PN I I
Sbjct: 501 KPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVE---QSCEPGHQSPNCILFI 556
Query: 185 ENLRKSDTGNYGCNAT 200
ENL G+Y C A
Sbjct: 557 ENLTAQQYGHYFCEAQ 572
Score = 41.9 bits (97), Expect = 7e-04
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 2/77 (2%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTILETGDLKIT 275
+ + L+C + +W H + L I
Sbjct: 499 NPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIE 557
Query: 276 DVAFADSGEYTCFARNK 292
++ G Y C A+
Sbjct: 558 NLTAQQYGHYFCEAQEG 574
Score = 37.7 bits (86), Expect = 0.013
Identities = 13/94 (13%), Positives = 22/94 (23%), Gaps = 6/94 (6%)
Query: 307 HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
+ + C S + W +S QS + L
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSC---PMESRHATYSWRHKENVE--QSCEPGHQSPNCIL 554
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
+ + G Y C AQ E + +
Sbjct: 555 FIENLTAQQYGHYFCEAQ-EGSYFREAQHWQLLP 587
Score = 35.4 bits (80), Expect = 0.074
Identities = 14/79 (17%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Query: 27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG 86
+ PK +K N + L C W + Q
Sbjct: 494 HKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNC 552
Query: 87 KSLIIKHVEFSDQGSYTCE 105
L I+++ G Y CE
Sbjct: 553 -ILFIENLTAQQYGHYFCE 570
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 41.9 bits (97), Expect = 6e-04
Identities = 34/263 (12%), Positives = 68/263 (25%), Gaps = 21/263 (7%)
Query: 141 ETVTFECKASGLP--EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN 198
++VTF CK + + N P
Sbjct: 93 DSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPR 152
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
+ V+ + P + T V+ P+ + +W + E
Sbjct: 153 DCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVE 212
Query: 259 LTGGR---------YTILETGDLKITDVAFADSGEYTCFARNKL----GTAQGSGSLTVK 305
+ + T +L I + + E+ C + S +
Sbjct: 213 VHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRP 272
Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID--FESEPRFVQSND 363
+ + P E A + C +++ W +P + ++P +
Sbjct: 273 KAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNES 332
Query: 364 YS----LTVTKSSELDSGQYTCR 382
Y L V KS+ +TC
Sbjct: 333 YFVYSKLNVQKSNWEAGNTFTCS 355
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 40.7 bits (95), Expect = 6e-04
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 16/125 (12%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSG------------SLTVKEHTHITDQPEDYEV 319
L I D DSG Y C A + ++G +TV+ + +P + +
Sbjct: 73 LHIRDAQLEDSGTYFC-AADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIM 131
Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQY 379
+ C +++I + ++F+ S YS V DS
Sbjct: 132 K--NGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYS-AVKLGQYGDSNSV 188
Query: 380 TCRAQ 384
TC Q
Sbjct: 189 TCSVQ 193
Score = 32.2 bits (73), Expect = 0.36
Identities = 21/184 (11%), Positives = 49/184 (26%), Gaps = 29/184 (15%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWV--HNGKP---ISQAPPNPRRKVGPNR----- 181
P ++ E C + + W ++ + +
Sbjct: 8 PSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSK 66
Query: 182 ------ITIENLRKSDTGNYGC------NATNSLGYVYKDVYVN--VLAHAPEITEAPKD 227
+ I + + D+G Y C + K V+ + P+ K
Sbjct: 67 ERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP 126
Query: 228 EYTVDGKTVVLTCRV--FGAPKPEVNWIHNQKELTGGRYTILETGD--LKITDVAFADSG 283
+ + C V F + ++ ++K + ++ + + DS
Sbjct: 127 SVFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYGDSN 186
Query: 284 EYTC 287
TC
Sbjct: 187 SVTC 190
Score = 31.5 bits (71), Expect = 0.74
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 44 VALRNKKVELFCIFGG-TPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
V + + C+ P TI + I GK +K ++ D S
Sbjct: 128 VFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYGDSNS 187
Query: 102 YTCEVS 107
TC V
Sbjct: 188 VTCSVQ 193
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 38.9 bits (91), Expect = 7e-04
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEGSI 452
+ P P++ L + + W+ P Y ++ E G G
Sbjct: 1 GSSGSSGP-SMPASPVLTKA-GITWLSLQWSK--PSGTPSDEGISYILEMEEETSGYGF- 55
Query: 453 RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVP 504
GE V ++K +V+A+N PSE++ F T P+ P
Sbjct: 56 --KPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGP 106
Score = 38.9 bits (91), Expect = 7e-04
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLP 557
+ P S G + L+W KP + Y ++ +
Sbjct: 3 SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSG------YGFK 56
Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
D + + L STKY+ + Y G S+
Sbjct: 57 PKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSE 94
Score = 32.3 bits (74), Expect = 0.14
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 685 KDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
++ GE V ++K +V+A+N PSE++ F T
Sbjct: 47 EEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 100
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 38.7 bits (90), Expect = 7e-04
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 88 SLIIKHVEFSDQGSYTCEVSN----GVGEAKSYSIDLSVLA 124
+L + +++ D+G Y C + + G+ + +LSVLA
Sbjct: 70 TLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLA 110
Score = 36.0 bits (83), Expect = 0.008
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 25/84 (29%)
Query: 233 GKTVVLTCRVFGAPKPE-----VNWI----------HNQKELTG-------GRYTILETG 270
+T L C+ + V W + KE GR T ++
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGR-TSFDSD 67
Query: 271 D--LKITDVAFADSGEYTCFARNK 292
L++ ++ D G Y C +K
Sbjct: 68 SWTLRLHNLQIKDKGLYQCIIHHK 91
Score = 34.0 bits (78), Expect = 0.037
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 318 EVEA--GQSATFRCNAVSDPSLKLS---IVWLRGSEPI---------DFESE-PRF---- 358
+++A ++A C + + LS + W + F+S ++
Sbjct: 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRT 62
Query: 359 -VQSNDYSLTVTKSSELDSGQYTCRAQTE 386
S+ ++L + D G Y C +
Sbjct: 63 SFDSDSWTLRLHNLQIKDKGLYQCIIHHK 91
Score = 27.9 bits (62), Expect = 4.9
Identities = 17/83 (20%), Positives = 23/83 (27%), Gaps = 20/83 (24%)
Query: 135 INAAEEETVTFEC-----KASGLPEPEIHWVHNGKPI------------SQAPP-NPRRK 176
I A ET C + L E + W + S R
Sbjct: 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63
Query: 177 VGPNRIT--IENLRKSDTGNYGC 197
+ T + NL+ D G Y C
Sbjct: 64 FDSDSWTLRLHNLQIKDKGLYQC 86
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 38.7 bits (90), Expect = 8e-04
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 9/104 (8%)
Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
++L + +L W QP+ Y ++ P E
Sbjct: 9 LPPPRALTLAAVTPRTVHLTW----QPSAGATHYLVRCSPA-----SPKGEEEEREVQVG 59
Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDN 607
L GLEP Y + + P P +
Sbjct: 60 RPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGPSS 103
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 40.5 bits (94), Expect = 8e-04
Identities = 15/162 (9%), Positives = 45/162 (27%), Gaps = 16/162 (9%)
Query: 422 SWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE---LIVNKGESTTTEVDKFVPASKNFA 478
+W S + W + +++ + ++ ++ ++ K
Sbjct: 18 TWQSSSEPQPTN----LTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 73
Query: 479 RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYK 538
V + + + + +P ++L L S L W + + +
Sbjct: 74 VVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLE--HL 131
Query: 539 IKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
++Y++ S L ++ +Y
Sbjct: 132 VQYRTDWDHSW-------TEQSVDYRHKFSLPSVDGQKRYTF 166
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 41.0 bits (96), Expect = 0.001
Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 62/238 (26%)
Query: 141 ETVTFECKASGLPEPEIHWV--HNGKP-------ISQAPPNPRRKVGPNRI--------- 182
+V EC++ + W + + + V ++
Sbjct: 40 TSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTL 99
Query: 183 ---TIENLRKSDTGNYGCNATNSLGYVYKDVY------VNVLAHAPEITE------APKD 227
T+ + D+ Y C+A + + + + V + P +
Sbjct: 100 STLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSE 159
Query: 228 EYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEY 285
+ L C G P E++W N KE+ G + T + + + Y
Sbjct: 160 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG----VSTDPQPLKEQPALNDSRY 215
Query: 286 TCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
+ S L V ++ FRC V L + W
Sbjct: 216 SL-----------SSRLRV--------SATFWQ---NPRNHFRCQ-VQFYGLSENDEW 250
Score = 37.6 bits (87), Expect = 0.010
Identities = 41/248 (16%), Positives = 73/248 (29%), Gaps = 58/248 (23%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI--------------------HNQKELT 260
+++ P + G +V + CR + W ++ +
Sbjct: 27 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVE 86
Query: 261 GGRYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQ-----GSGS-LTVKEHTHI 310
++ I L +T DS Y C AR+ A G G+ LTV E
Sbjct: 87 KDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKN 146
Query: 311 TDQPEDY-------EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID--------FESE 355
PE E+ Q AT C A + + W + + E
Sbjct: 147 VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKE 206
Query: 356 PRFVQSNDYS----LTVTKSSELDSGQ-YTCRAQTELDFIEAQATLTVQVPLEAPSNFTL 410
+ + YS L V+ + + + C+ Q L+ +
Sbjct: 207 QPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY--------GLSENDEWTQDRAKPV 258
Query: 411 IQVIDAKK 418
Q++ A+
Sbjct: 259 TQIVSAEA 266
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 38.4 bits (89), Expect = 0.001
Identities = 18/103 (17%), Positives = 27/103 (26%), Gaps = 20/103 (19%)
Query: 132 PEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVG--------PNRI 182
+N E+VTF + + I W P + RI
Sbjct: 6 IFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERI 65
Query: 183 ---------TIENLRKSDTGNYGC--NATNSLGYVYKDVYVNV 214
I +LR D G+Y N K + +
Sbjct: 66 HALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 33.0 bits (75), Expect = 0.076
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 20/96 (20%)
Query: 322 GQSATFRCNAVSDPSLKLSIVWLRG------------SEPIDFESEPRF-----VQSNDY 364
G+S TF N + +P I W + P+ + + +Y
Sbjct: 14 GESVTFPVN-IQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNY 72
Query: 365 SLTVTKSSELDSGQYTCR--AQTELDFIEAQATLTV 398
+L ++ D+G Y Q + + L +
Sbjct: 73 NLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 31.4 bits (71), Expect = 0.30
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 77 SDRISQGNYGKSLIIKHVEFSDQGSYTCEV-SNGVGEAKSYSIDLSV 122
+RI +L+I + D G Y ++ + + +L +
Sbjct: 62 YERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 23/178 (12%)
Query: 413 VIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVP 472
A SW + + D ++ E + V +
Sbjct: 228 FDGAAVLSCSWEVRKE---VASSVSFGLFYKPSPDAGSAVLL-----REEECSPVLREGL 279
Query: 473 ASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG---------SSAFYLK 523
S + + I V P ++S I + ++ L+
Sbjct: 280 GSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLR 339
Query: 524 WVKPEQPNGVL-MGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
W + + ++I+Y+ T + + S L LEPST+Y
Sbjct: 340 WETMKMRYEHIDHTFEIQYRKDTATW-----KDSKTETLQNAHSMALPALEPSTRYWA 392
Score = 36.1 bits (82), Expect = 0.043
Identities = 23/179 (12%), Positives = 49/179 (27%), Gaps = 12/179 (6%)
Query: 483 FNGAYNGPPSEIISFVTPEGV-PGTVQSLEAIPLGSSAFYLKWVKPEQPNGV--LMGYKI 539
F+ + P ++ + V P + L+ F L W L +
Sbjct: 87 FSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDH-FLLTWSVALGSPQSHWLSPGDL 145
Query: 540 KYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG---AESKY 596
+++ V + +S+ + + L PS+ Y + G SK+
Sbjct: 146 EFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKW 205
Query: 597 LFYVPFKNPDNVEGRGSTPNNLVISWTAM-----PEIEHNAPHFKYRIFWRRHNTGEAW 650
V + + E + + E + + + G A
Sbjct: 206 SPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAV 264
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 39.8 bits (93), Expect = 0.002
Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 44/172 (25%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP-----------PNPRRKVG-P 179
P + ++ EC G P ++W QA + P
Sbjct: 8 PATLVQPVGSPLSLECTVEGTSNPNLYWYR------QAAGRGLQLLFYSVGIGQISSEVP 61
Query: 180 NRIT------------IENLRKSDTGNYGCNATNSLGYVYKDVY------VNVLAHAPEI 221
++ + L SD+G Y C + S+G +Y + V+ ++
Sbjct: 62 QNLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKV 121
Query: 222 TE------APKDEYTVDGKTVVLTCRV--FGAPKPEVNWIHNQKELTGGRYT 265
P + + L C F E++W N KE+ G T
Sbjct: 122 FPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCT 173
Score = 37.5 bits (87), Expect = 0.009
Identities = 38/211 (18%), Positives = 59/211 (27%), Gaps = 47/211 (22%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-----------------NQKELTGGR 263
I + P G + L C V G P + W
Sbjct: 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQN 63
Query: 264 YTILETGD----LKITDVAFADSGEYTCFARNKLGTAQ-----GSG-SLTVKEHTHITDQ 313
+ D L + +DSG Y C +G G G LTV E +
Sbjct: 64 LSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFP 123
Query: 314 PEDY-------EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID--------FESEPRF 358
PE E+ Q AT C A + + W + + E
Sbjct: 124 PEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPA 183
Query: 359 VQSNDYS----LTVTKSS-ELDSGQYTCRAQ 384
+ + Y+ L V+ + + + C+ Q
Sbjct: 184 LNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 214
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 132 PEFINAAEEETVTFECK---ASGLPEPEIHWVHNGKP------ISQAPPNPRRKVGPNRI 182
PE +N+ E +V+ C S +W G IS + G +
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 183 -----------TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
I L + D+G Y C + + DV + VL
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
Score = 34.5 bits (79), Expect = 0.028
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 18/104 (17%)
Query: 313 QPEDYEVEAGQSATFRCN-AVSDPSLKLSIVWLRGSEPIDFES------------EPRFV 359
PE+ G S + C + + W R + R
Sbjct: 6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRAN 65
Query: 360 -----QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
++ + + + + S+ DSG+Y C + +L V
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 37.6 bits (87), Expect = 0.002
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 29/114 (25%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRVF---GAPKPEVNWI------------------HNQKE 258
+ P+ V + C G + V W+ H Q+
Sbjct: 3 PTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQA 62
Query: 259 LTGGRYTILET--GD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT 308
GR + GD L+I + D YTC + G+ +++
Sbjct: 63 KYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQT----PDGNQVIRDKI 112
Score = 36.5 bits (84), Expect = 0.006
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
SL I ++ D+ YTCEV+ + D +
Sbjct: 79 SLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKII 113
Score = 34.5 bits (79), Expect = 0.025
Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 23/114 (20%)
Query: 310 ITDQPEDYEVEAGQSATFRCN-AVSDPSLKLSIVW--LRGSEPI---------DFESEPR 357
PE +C ++ + W GS+ + D + +
Sbjct: 4 TLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAK 63
Query: 358 F--------VQSNDYSLTVTKSSELDSGQYTCRAQTELD---FIEAQATLTVQV 400
+ D SL + D YTC + + + ++V
Sbjct: 64 YRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
Score = 31.8 bits (72), Expect = 0.23
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 28/116 (24%)
Query: 127 YFTVE-PEFINAAEEETVTFECK---ASGLPEPEIHW--------------VHNGKPISQ 168
+ T++ PE + + V +C G + + W G I Q
Sbjct: 2 HPTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQ 61
Query: 169 APPNPRRKVGPNR-----ITIENLRKSDTGNYGC-----NATNSLGYVYKDVYVNV 214
A R KV + I L+ D +Y C + K + + V
Sbjct: 62 AKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 39.9 bits (92), Expect = 0.002
Identities = 43/303 (14%), Positives = 77/303 (25%), Gaps = 44/303 (14%)
Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
++ L P NFT I+V + ++ W P Q R Y+V+
Sbjct: 9 KISLLPPVNFT-IKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINA----PKEDDYETRI 63
Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI-ISFVTPEGVPGT----------- 506
T + AS R + N S P G PGT
Sbjct: 64 TESKAVTILHMGFSAS---VRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNT 120
Query: 507 -VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 565
+ + + + W+ Y + Y+ T+ E Y D
Sbjct: 121 TEDNYSRLRSYQVSLHCTWMVGTDAPEDT-QYFLYYRYGSWTE-----ECQEYSMDTLGR 174
Query: 566 SA----KLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKN------PDNVEGRGSTP 615
+ + + + + + A + P NV
Sbjct: 175 NIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAEIE-G 233
Query: 616 NNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYE 675
+ I W P F Y + G + + ++ Y+
Sbjct: 234 TRMSIQWEK-PVSAFPIHCFDYEVKIHNTRNGYLQIEK-----LMTNAFISIIDDLSKYD 287
Query: 676 IKV 678
++V
Sbjct: 288 VQV 290
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 37.7 bits (87), Expect = 0.003
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKH 93
+ + VA + K+ + + + +L +
Sbjct: 42 RPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDA--TLALHG 99
Query: 94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
+ D+G+YTCE + + L V
Sbjct: 100 LTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 37.7 bits (87), Expect = 0.003
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 250 VNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC-FARNKLGTAQGSGSLTV 304
++++ ++ L+ L + + D G YTC FA G+ +G L V
Sbjct: 73 LSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 30.7 bits (69), Expect = 0.68
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 182 ITIENLRKSDTGNYGCN-ATNSLGYVYKDVYVNV 214
+ + L D GNY C AT G V ++ V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 39.2 bits (91), Expect = 0.003
Identities = 27/194 (13%), Positives = 65/194 (33%), Gaps = 29/194 (14%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------------IH----NQKELT 260
A +T+ +G ++ L C+ + P + W + +
Sbjct: 8 EAQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQG 67
Query: 261 GGRYTILETGD-----LKITDVAFADSGEYTCFAR-----NKLGTAQGSGSLTVKEHTHI 310
+ + L+ V ++DS Y C +KL +G+ LTV +
Sbjct: 68 VNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGA-KLTVSPNIQ- 125
Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTK 370
P Y++ +S+ +D + ++ + S+ + ++S D+ + +
Sbjct: 126 NPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFK-SNSA 184
Query: 371 SSELDSGQYTCRAQ 384
+ + + C
Sbjct: 185 VAWSNKSDFACANA 198
Score = 33.5 bits (76), Expect = 0.20
Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 32/184 (17%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHW------------VHNGKPISQAPPNPRRKVGP 179
+ +E ++ CK S P + W + +
Sbjct: 16 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEF 75
Query: 180 NR------ITIENLRKSDTGNYGCNATNSLGYVYKD---------VYVNVLAHAPEITEA 224
++ + ++ SD+ Y C + G K V N+ P + +
Sbjct: 76 SKSDSSFHLRKASVHWSDSAVYFCAVSAK-GTGSKLSFGKGAKLTVSPNIQNPDPAVYQL 134
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSG 283
+ V F + + +T + + D K + VA+++
Sbjct: 135 RDSK---SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKS 191
Query: 284 EYTC 287
++ C
Sbjct: 192 DFAC 195
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 36.9 bits (86), Expect = 0.003
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
+ P L +++ L W + + Y I+Y++
Sbjct: 3 SGSSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTE------GPFQE 54
Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
+ TT + GL P ++Y + G G S+
Sbjct: 55 VDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSE 91
Score = 34.6 bits (80), Expect = 0.018
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 403 EAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
+ P + + V + ++W+ + + + Y +Q EG +E V+
Sbjct: 9 KPPID---LVVTETTATSVTLTWDSGNSEPVTY----YGIQYR-AAGTEGPFQE--VDGV 58
Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPGT 506
+T + P S+ RVLA N GPPSE + T + P +
Sbjct: 59 ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSS 105
Score = 27.3 bits (61), Expect = 8.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 678 VVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV 737
+Q EG +E V+ +T + P S+ RVLA N GPPSE +
Sbjct: 40 GIQYR-AAGTEGPFQE--VDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRAR 96
Query: 738 TPE 740
T E
Sbjct: 97 TGE 99
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 37.0 bits (85), Expect = 0.003
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
V + A+ + +++ L W + + YKI E + +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAG----------ETDSSNLNVS 57
Query: 564 TTSAKLAGLEPSTKYRIH 581
A + GL ST Y I
Sbjct: 58 EPRAVIPGLRSSTFYNIT 75
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 37.1 bits (85), Expect = 0.003
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 233 GKTVVLTCRV-FGAPKPEVNWIH---NQKELTGGRYTILETGD------LKITDVAFADS 282
G L C V + A +P V W R T + L V D+
Sbjct: 26 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 85
Query: 283 GEYTCFARNKLGTAQG-SGSLTVKEHTH 309
G Y C A + + S +L V + H
Sbjct: 86 GSYRCSANFQSNLIESHSTTLYVTDVKH 113
Score = 37.1 bits (85), Expect = 0.004
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 25 SASQNRHAPKQQYVTRK-KEVALRNKKVELFC-IFGGTPLPQTIWSK----DGVPINPSD 78
+ Q Y+ R+ + L EL C + P W K V +
Sbjct: 2 NIHGKESCDVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ 61
Query: 79 RISQGNYGKS---LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
+ S L + V +D GSY C + +S+S L V
Sbjct: 62 TSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
Score = 30.2 bits (67), Expect = 0.81
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 11/79 (13%)
Query: 137 AAEEETVTFECKAS-GLPEPEIHWV-HNGKPISQAPPNPRRKVGPNR-------ITIENL 187
+ EC P + W NG + R+ + E +
Sbjct: 23 ILAGDPFELECPVKYCANRPHVTWCKLNGT--TCVKLEDRQTSWKEEKNISFFILHFEPV 80
Query: 188 RKSDTGNYGCNATNSLGYV 206
+D G+Y C+A +
Sbjct: 81 LPNDNGSYRCSANFQSNLI 99
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 38.5 bits (89), Expect = 0.003
Identities = 28/206 (13%), Positives = 53/206 (25%), Gaps = 20/206 (9%)
Query: 312 DQPEDYEVEAGQSATFRC-------NAVSDPSLKLSIVWLRGSEPIDFE--SEPRFVQSN 362
PE+ + C V S L P +
Sbjct: 22 RGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFS-YQLEDEPWKLCRLHQAPTARGAV 80
Query: 363 DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV--QVPLEAPSNFTLIQVIDAKKAV 420
+ ++ + R + + V L+AP ++ V
Sbjct: 81 RFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVV 140
Query: 421 VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 480
+ W P + H R Y+V + + + T + ++ V
Sbjct: 141 LRWLPPPETPMTSHIR-YEVDVSAGQGAGS--VQRVEILEGRTECVLSNLRGRTRYTFAV 197
Query: 481 LA--FNGAYNGPPSE---IISFVTPE 501
A ++ G SE +S +TP
Sbjct: 198 RARMAEPSFGGFWSEWSEPVSLLTPS 223
Score = 33.1 bits (75), Expect = 0.20
Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 14/190 (7%)
Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG--HFRGYKVQTWTEKDGEGSIREL 455
+ P + V W + + + Y+++ K
Sbjct: 17 ALLAARGPEELLCF-TERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPT 75
Query: 456 IVNKGESTTTEVDKFVPASKNFA-RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIP 514
+ + RV A +GA P + + + L A
Sbjct: 76 ARGAVRFWCSLPTADTSSFVPLELRVTAASGA---PRYHRVIHINEVVLLDAPVGLVARL 132
Query: 515 LGSSAFY-LKWVKP-EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL 572
S L+W+ P E P + Y++ + +G +E T L+ L
Sbjct: 133 ADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVE-----ILEGRTECVLSNL 187
Query: 573 EPSTKYRIHL 582
T+Y +
Sbjct: 188 RGRTRYTFAV 197
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 37.1 bits (86), Expect = 0.004
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 22/97 (22%)
Query: 312 DQPEDYEVEAGQSATFRCN----AVSDPSLKLSIVWLRG----SEPIDFESEPRFVQS-- 361
P++ + +G C A S ++ +W + + +P+ V
Sbjct: 5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRF 64
Query: 362 ------------NDYSLTVTKSSELDSGQYTCRAQTE 386
+L + DSG Y R +
Sbjct: 65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
Score = 32.1 bits (73), Expect = 0.17
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 32/120 (26%)
Query: 223 EAPKDEYTVDGKTVVLTCRVF------------------GAPKPEVNWIHN----QKELT 260
+PK+ + G +++ C + K +V +
Sbjct: 5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRF 64
Query: 261 GGRYTIL-----ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
GR ++ + +L + D+ DSG Y S + T +T +
Sbjct: 65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRF-----EISDSNRWLDVKGTTVTVTTD 119
Score = 30.6 bits (69), Expect = 0.65
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
+L++K ++ D G+Y +V TV +
Sbjct: 80 NLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTV------TVTTD 119
Score = 29.4 bits (66), Expect = 1.4
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE 220
+ +++L+ D+G Y S + DV + +
Sbjct: 81 LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTTD 119
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 38.9 bits (91), Expect = 0.004
Identities = 44/252 (17%), Positives = 73/252 (28%), Gaps = 78/252 (30%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP-----------PNPRRKV 177
T + +E ++ CK S P + W Q P
Sbjct: 7 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYV------QYPRQGPQMLLKYYSGDPVVQ 60
Query: 178 GPNRI-------------TIENLRKSDTGNYGCNATNSLGYVYKDVY-----VNVLAHAP 219
G N ++ +SD+ Y C A ++ G K + + V
Sbjct: 61 GVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFC-AVSAKGTGSKLSFGKGAKLTVSPGGG 119
Query: 220 -------------------EITEAPKDEYTVDGKTVVLTCRVFG----------APKPEV 250
+T++P+++ TV G+ V L+CR E+
Sbjct: 120 GSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHEL 179
Query: 251 NWIH-------NQKELTGGRYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQ-G 298
I+ Q Y T L + + + + Y C + + G G
Sbjct: 180 RLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFG 239
Query: 299 SG-SLTVKEHTH 309
G LTV E H
Sbjct: 240 EGSKLTVLELEH 251
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 37.2 bits (85), Expect = 0.004
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 33 PKQQYVTRKKE-VALRNKKVELFC-IFGGTPLPQTIWSK----DGVPINPSDRISQG--- 83
Q + R + A + ++ C + P W K VP+ ++
Sbjct: 13 EVQLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEE 72
Query: 84 --NYGK-SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
+ L K + SD GSY+C + S+S+ + V
Sbjct: 73 NRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
Score = 29.5 bits (65), Expect = 1.6
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 22/94 (23%)
Query: 233 GKTVVLTCRV-FGAPKPEVNWIHNQKELTGGRYTILETGD----------------LKIT 275
G+ + C V + +P V W + G + LE G L
Sbjct: 29 GELFKIECPVKYCVHRPNVTW----CKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFK 84
Query: 276 DVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHT 308
+ +D+G Y+C S ++ V+E +
Sbjct: 85 PIHLSDNGSYSCSTNFNSQVINSHSVTIHVRERS 118
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 38.6 bits (90), Expect = 0.004
Identities = 35/231 (15%), Positives = 60/231 (25%), Gaps = 57/231 (24%)
Query: 132 PEFINAAEEETVTFECKASG----------LP--EPE-IHWVHNGKPISQAPPNPRRKVG 178
P A VT C + IH+ + + K
Sbjct: 7 PRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS 66
Query: 179 PN-----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP-------------- 219
+ +E S T Y C + + + + + +
Sbjct: 67 RPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKK 126
Query: 220 --EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW-----------IH----NQKELTGG 262
++ ++P+ +G+T +L C + W + + G
Sbjct: 127 DGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDG 186
Query: 263 RYTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQ--GSG-SLTVK 305
R+TI L I D DS Y C A + G G L V
Sbjct: 187 RFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTNAYKVIFGKGTHLHVL 237
Score = 30.9 bits (70), Expect = 1.2
Identities = 31/217 (14%), Positives = 55/217 (25%), Gaps = 57/217 (26%)
Query: 220 EITEAPKDEYTVDGKTVVLTCRV-FG---------APKPEVNWIH-------NQKELTGG 262
+T++P+++ V G V L+C + IH +K
Sbjct: 2 AVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPD 61
Query: 263 RYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH--------- 309
Y L + + + Y C A LG
Sbjct: 62 GYKASRPSQENFSLILELATPSQTSVYFC-ASGDLGQTNERLFFGHGTKLSVLGSADDAK 120
Query: 310 ---------ITDQPEDYEVEAGQSATFRCNAVS-----------DP--SLKLSIVWLRGS 347
+ P+ V G++A C+ + P L ++ +
Sbjct: 121 KDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPAL-LISILSV 179
Query: 348 EPIDFESEPRFVQS---NDYSLTVTKSSELDSGQYTC 381
+ + SL + S DS Y C
Sbjct: 180 SDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC 216
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 36.5 bits (84), Expect = 0.005
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 261 GGRYTILETGDLKITDVAFADSGEYTCF-ARNKLGTAQGSGSLTV 304
GR I L I ++ D+G YT ++ L + +G V
Sbjct: 63 SGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 36.4 bits (84), Expect = 0.006
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 16/98 (16%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEP----IDFESEPRFVQS----------NDY 364
G + T + + I WL ++ S +S N+
Sbjct: 15 AYTGSNVTLKIH-KDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNG 73
Query: 365 SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL 402
+L ++ + D G Y R E E + TL V P+
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRE-TENELKITLEVFDPV 110
Score = 34.8 bits (80), Expect = 0.018
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 67 WSKDGVPINP----SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI 118
++ + R+ +L I +V D+G+Y V ++
Sbjct: 49 YNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLRETENELKITL 104
Score = 34.1 bits (78), Expect = 0.034
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 18/98 (18%)
Query: 135 INAAEEETVTFECKASGLPEPE-IHWVHNGKP-ISQAPPNPRRKVGPNR----------- 181
INA VT + L I W+H I + N + + +
Sbjct: 13 INAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENN 72
Query: 182 --ITIENLRKSDTGNYGC---NATNSLGYVYKDVYVNV 214
+ I N+RK D G Y T + + +V+ V
Sbjct: 73 GALHISNVRKEDKGTYYMRVLRETENELKITLEVFDPV 110
Score = 28.7 bits (64), Expect = 3.0
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 268 ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
G L I++V D G Y + + +L V +
Sbjct: 71 NNGALHISNVRKEDKGTYYMRVLRE-TENELKITLEVFD 108
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 36.4 bits (84), Expect = 0.007
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 19/112 (16%)
Query: 132 PEFINAAEEETVTFECK-ASGLPEPEIHWVHNGKP------ISQAPPNPRRKVGPNRI-- 182
P +N E ++T +C SG W + + K I
Sbjct: 9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKD 68
Query: 183 ---------TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAP 225
T+E+L K+D Y C + + V V + AP E
Sbjct: 69 NQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDP-APVTQEET 119
Score = 33.7 bits (77), Expect = 0.064
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 27/120 (22%)
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRG---------- 346
+G +T P S T +C S W RG
Sbjct: 1 RGIPQIT---------GPTTVNGLERGSLTVQCVYRSGWE-TYLKWWCRGAIWRDCKILV 50
Query: 347 --SEPIDFESEPRF-----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
S R ++ +++T+ + D+ Y C + + + +T+
Sbjct: 51 KTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTID 110
Score = 30.3 bits (68), Expect = 0.98
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 66 IWSKDGVPINPSDRISQGNYGK----SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121
+ + DR+S + K ++ ++ + +D +Y C + G ++ ++
Sbjct: 50 VKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVT 108
Query: 122 VLAAPYFTVEP 132
+ AP E
Sbjct: 109 IDPAPVTQEET 119
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 37.3 bits (86), Expect = 0.007
Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 36/159 (22%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR--------- 175
AP + P+ ++A + V C+ G W+ S P P
Sbjct: 9 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQ-NS-SSKLPQPTFVVYMASSHN 66
Query: 176 KVGPNR-------------------ITIENLRKSDTGNYGCNATNSLGYVYKD---VYVN 213
K+ + +T+ K + G Y C+ ++ + V
Sbjct: 67 KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQK 126
Query: 214 VLAHAPEITEAPKDEYTVDGKTV---VLTCRVFGAPKPE 249
V + + G + CR G+ K
Sbjct: 127 VNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGT 165
Score = 28.8 bits (64), Expect = 4.5
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
APE+ PK G+ V L C V G+ +W+ Q
Sbjct: 9 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF-QNS 48
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 36.2 bits (84), Expect = 0.007
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
G +PG + + ++ L W Y I+ S +
Sbjct: 1 GSSGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSN 60
Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
+ + TT + GL P+T Y
Sbjct: 61 SWQTVA-----NHVKTTLYTVRGLRPNTIYL 86
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 36.2 bits (84), Expect = 0.009
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPIDFESEP-RFVQS---N 362
I P + F C +L W R +P + SE R VQ+ +
Sbjct: 20 IWQHPRFAAKKRSSMVKFHCYTNHSGAL----TWFRKRGSQQPQELVSEEGRIVQTQNGS 75
Query: 363 DYSLTVTKSSELDSGQYTC 381
Y+LT+ D+G Y C
Sbjct: 76 VYTLTIQNIQYEDNGIYFC 94
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 35.5 bits (82), Expect = 0.010
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGEST 463
P+ + + A ++WN + Y V+ T+ G + + ++
Sbjct: 7 FPTGLSAVLDSSGNTANLTWNAAPGAN------SYNVKRSTKSGGPYT----TIATNITS 56
Query: 464 TTEVDKFVPASKNFA-RVLAFNGAYNGPPSEIISFVTPE 501
T D V + V A + S P+
Sbjct: 57 TNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQYPK 95
Score = 28.9 bits (65), Expect = 1.7
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 503 VPGTVQSLEAIPL-GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 561
P L A+ + L W G Y +K + G + ++
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTW---NAAPGAN-SYNVKRSTKSGGPYTTI------ATN 53
Query: 562 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
T+T+ G+ TKY ++ + + S
Sbjct: 54 ITSTNYTDTGVATGTKYYYVVSAVSNGVETLNS 86
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 37.3 bits (86), Expect = 0.010
Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 48/236 (20%)
Query: 221 ITEAPKDEYTVDGKTVVLTCR-------VF-------GAPKPEVNWIHNQKELTGG---R 263
+ ++P+ G VLTC V K + + G R
Sbjct: 5 VVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSR 64
Query: 264 YTILETGD----LKITDVAFADSGEYTCFA---RNKLGTAQGSGSLTVKEHTHITDQPE- 315
+++ + D + ++ + DS Y C + LTV E P+
Sbjct: 65 FSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKV 124
Query: 316 ------DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID--FESEPRFVQSND--YS 365
E+ Q AT C A + + W + + ++P+ + ++ YS
Sbjct: 125 SLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYS 184
Query: 366 ----LTVTKSSELDSGQ-YTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDA 416
L V+ + + + C+ Q L+ + S + Q I A
Sbjct: 185 LSSRLRVSATFWHNPRNHFRCQVQ--------FHGLSEEDKWPEGSPKPVTQNISA 232
Score = 30.7 bits (69), Expect = 1.2
Identities = 29/164 (17%), Positives = 44/164 (26%), Gaps = 31/164 (18%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWV--HNGKP----ISQAPPNPRRKVG-PNRI-- 182
P I + C + W GK I R K P+R
Sbjct: 9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSV 67
Query: 183 ----------TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL--------AHAPEITE- 223
+ L D+ Y C ++ G L P+++
Sbjct: 68 QQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF 127
Query: 224 APKDEYTVDGKTVVLTCRV--FGAPKPEVNWIHNQKELTGGRYT 265
P + + L C F E++W N KE+ G T
Sbjct: 128 EPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVST 171
Score = 29.6 bits (66), Expect = 3.0
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 69 KDGVPINPSDRIS---QGNYGKSLIIKHVEFSDQGSYTCEVSNG--------VGEAKSYS 117
K +P R S +Y + + +E D Y C S G +
Sbjct: 58 KGFLP----SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVL 113
Query: 118 IDLSVLAAPYFTV-EPEFINAAEEETVTFECKASGL--PEPEIHWVHNGKPISQ 168
DL + P ++ EP A ++ T C A G E+ W NGK +
Sbjct: 114 EDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS 167
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 36.9 bits (85), Expect = 0.010
Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 25/191 (13%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCR--------VF-------GAPKPEVNWIHNQKELTGG 262
++ ++P+ ++GK L C + P ++ + G
Sbjct: 3 KNQVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNG 62
Query: 263 RYTI-LETGD----LKITDVAFADSGEYTCFARNKLGTAQ----GSGSLTVKEHTHITDQ 313
RYT L+ L IT +DS Y C ++ T G G+
Sbjct: 63 RYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPD 122
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
P Y++ +S+ +D + ++ + S+ + ++S D+ + +
Sbjct: 123 PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKS-NSAVAW 181
Query: 374 LDSGQYTCRAQ 384
+ + C
Sbjct: 182 SNKSDFACANA 192
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 38.1 bits (88), Expect = 0.011
Identities = 47/366 (12%), Positives = 88/366 (24%), Gaps = 61/366 (16%)
Query: 70 DGVPINPSDRISQGNYGKS-LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYF 128
P + Y S + ++ QG Y C V + ++K ++
Sbjct: 178 QPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSK---KEIFRWPESPK 234
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
A + + + P + G+ + ++ +
Sbjct: 235 AQASSVPTAQPQAEGSLAKA-TTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPE---- 289
Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP 248
C + VY P + TC V G+
Sbjct: 290 --------CPSHTQPLGVY--------------LLTPAVQDLWLRDKATFTCFVVGSDLK 327
Query: 249 E--VNWIHNQKELTGGRYTILETGD----------LKITDVAFADSGEYTCFARNKLGTA 296
+ + W K TGG L L + + TC +
Sbjct: 328 DAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP 387
Query: 297 QGSGSLTVKEHTHITDQPEDY-----EVEAGQSATFRCNAVSDPSLK-LSIVWLRGSEPI 350
Q + ++E ++ C VS S + ++WL +
Sbjct: 388 QRL--MALREPAAQAPVKLSLNLLASSDPPEAASWLLC-EVSGFSPPNILLMWLEDQREV 444
Query: 351 DFES-----EPRFVQSNDYS----LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
+ P S + L V YTC E A+ +++V
Sbjct: 445 NTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS 504
Query: 402 LEAPSN 407
Sbjct: 505 YVTDHG 510
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 35.5 bits (82), Expect = 0.011
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 22/103 (21%)
Query: 132 PEFINAAEEETVTFECK-ASGLPEPEIHW---VHNGKP---ISQAPPNPRRKVGPNR--- 181
PE ++ E+ ++T +C+ SG + + +W V + + V NR
Sbjct: 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETD--ASEQLVKKNRVSI 65
Query: 182 ----------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+T+E+LR SD G Y C T V VN+
Sbjct: 66 RDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNI 108
Score = 30.8 bits (70), Expect = 0.47
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 20/105 (19%)
Query: 313 QPEDYEVEAGQSATFRCNAVS------------DPSLKLS-IVWLRGSEPIDFESEPRF- 358
PE+ + S T +C S P +V SE + ++ R
Sbjct: 7 GPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKN--RVS 64
Query: 359 ----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
+ +++T+ D+G Y C + T+ +
Sbjct: 65 IRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIG 109
Score = 27.8 bits (62), Expect = 5.1
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
++ ++ + SD G Y C ++ G G + + +++ P
Sbjct: 75 TVTMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNIGPVP 112
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 35.4 bits (82), Expect = 0.011
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERL 556
G Q L + + LKW P++ + GY ++Y + P +
Sbjct: 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEP 62
Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
+ L + + G AG +
Sbjct: 63 -----VERCGFTVKDLPTGARILFRVVGVNIAGRSEPAT 96
Score = 28.9 bits (65), Expect = 2.5
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEG 450
+ P AP + + V D + W P P + GY V+ E G
Sbjct: 1 GSSGSSGPTSAPQH---LTVEDVTDTTTTLKWRP--PDRIGAGGIDGYLVEYCLE----G 51
Query: 451 SIRELIVNKGESTTTE--VDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
S + NK V ++ RV+ N A P+ ++ VT
Sbjct: 52 SEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVT 102
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 36.9 bits (85), Expect = 0.013
Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 26/179 (14%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHW---VHNGKPI--------SQAPPNPRRKVGPN 180
+ +E + + C S P + W P + + + +
Sbjct: 7 QGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYD 66
Query: 181 R------ITIENLRKSDTGNYGCNATNSLGYV-----YKDVYVNVLAHAPEITEAPKDEY 229
+ + ++++ D+ Y C A + V N+ P + + +
Sbjct: 67 KGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQLRDSK- 125
Query: 230 TVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSGEYTC 287
V F + + +T + + D K + VA+++ ++ C
Sbjct: 126 --SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFAC 182
Score = 33.4 bits (76), Expect = 0.17
Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 21/172 (12%)
Query: 233 GKTVVLTCR--------VF-------GAPKPEVNWIHNQKELTGGRYTILETGD-----L 272
+ + C +F P+ + + + + L
Sbjct: 15 NDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHL 74
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV 332
+ T V DS Y C A + G+G+ P Y++ +S+
Sbjct: 75 QKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQLRDSKSSDKSVCLF 134
Query: 333 SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
+D + ++ + S+ + ++S D+ + + + + + C
Sbjct: 135 TDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFK-SNSAVAWSNKSDFACANA 185
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 37.1 bits (86), Expect = 0.014
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 35/159 (22%)
Query: 141 ETVTFECKASGLPEPEIHWV--HNGKP-------ISQAPPNPRRKVGPNRI--------- 182
+V EC++ + W + + + V ++
Sbjct: 17 TSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTL 76
Query: 183 ---TIENLRKSDTGNYGCNATNSLGYVYKDVY-----VNVLAHAPEITE------APKDE 228
T+ + D+ Y C + + G + + + VL + P +
Sbjct: 77 STLTVTSAHPEDSSFYIC-SARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEA 135
Query: 229 YTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
+ L C G P E++W N KE+ G T
Sbjct: 136 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCT 174
Score = 32.1 bits (73), Expect = 0.57
Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 48/212 (22%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH--------------------NQKELT 260
+++ P + G +V + CR + W ++ +
Sbjct: 4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVE 63
Query: 261 GGRYTILETGD----LKITDVAFADSGEYTCFAR----NKLGTAQGSGSLTVKEHTHITD 312
++ I L +T DS Y C AR LTV E
Sbjct: 64 KDKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVF 123
Query: 313 QPEDY-------EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID--------FESEPR 357
PE E+ Q AT C A + + W + + E
Sbjct: 124 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQP 183
Query: 358 FVQSNDYS----LTVTKSSELDSGQ-YTCRAQ 384
+ + Y+ L V+ + + + C+ Q
Sbjct: 184 ALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 215
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 36.9 bits (85), Expect = 0.015
Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 58/242 (23%)
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFG--------------APKPEVNWIH-------NQKEL 259
+T++P+++ V G V L+C+ + IH +K
Sbjct: 2 VTQSPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLR----LIHYSYGAGSTEKGD 57
Query: 260 TGGRYTI----LETGDLKITDVAFADSGEYTCFARNKLGTAQ----GSGS-LTVKEHTHI 310
Y E L + + + Y C + G+ G G+ LTV E
Sbjct: 58 IPDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQ 117
Query: 311 TDQPEDY-------EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI--DFESEPRFVQS 361
P+ E+ Q AT C A + + W + + ++P+ +
Sbjct: 118 VTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKE 177
Query: 362 ND--YS----LTVTKSSELDSGQ-YTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVI 414
++ Y L V+ + + + C+ Q L+ + S + Q I
Sbjct: 178 SNYSYCLSSRLRVSATFWHNPRNHFRCQVQ--------FHGLSEEDKWPEGSPKPVTQNI 229
Query: 415 DA 416
A
Sbjct: 230 SA 231
Score = 31.5 bits (71), Expect = 0.83
Identities = 28/166 (16%), Positives = 45/166 (27%), Gaps = 33/166 (19%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVH--NGKP----ISQAPPNPRRKVG-PNRI-- 182
P A VT C+ + ++W G K P+
Sbjct: 6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKA 64
Query: 183 ----------TIENLRKSDTGNYGCNATNSLGYVYKDVYVN----------VLAHAPEIT 222
+E S T Y C + G + + P+++
Sbjct: 65 SRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVS 124
Query: 223 E-APKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
P + + L C G P E++W N KE+ G T
Sbjct: 125 LFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVST 170
Score = 29.9 bits (67), Expect = 2.2
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 88 SLIIKHVEFSDQGSYTCEVSN----------GVGEAKSYSIDLSVLAAPYFTV-EPEFIN 136
SLI++ S Y C G G + DL + P ++ EP
Sbjct: 73 SLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAE 132
Query: 137 AAEEETVTFECKASGL-PEP-EIHWVHNGKPISQ 168
A ++ T C A G P+ E+ W NGK +
Sbjct: 133 IANKQKATLVCLARGFFPDHVELSWWVNGKEVHS 166
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 35.7 bits (82), Expect = 0.015
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 26/109 (23%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV------------------HNGKPI 166
AP + P+ ++A + V C+ G W+ + I
Sbjct: 4 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKI 63
Query: 167 SQAPPNPRRKVG--------PNRITIENLRKSDTGNYGCNATNSLGYVY 207
+ K+ +T+ K + G Y C+ ++ +
Sbjct: 64 TWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 112
Score = 30.3 bits (68), Expect = 0.81
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 28/98 (28%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL--------------------RGSEP 349
+ P+ + E GQ C + S S WL
Sbjct: 7 LRIFPKKMDAELGQKVDLVCEVLGSVSQGCS--WLFQNSSSKLPQPTFVVYMASSHNKIT 64
Query: 350 IDFESEPRFVQS------NDYSLTVTKSSELDSGQYTC 381
D + + S N Y LT+ K S+ + G Y C
Sbjct: 65 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFC 102
Score = 30.3 bits (68), Expect = 0.88
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 13/121 (10%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITD 276
APE+ PK G+ V L C V G+ +W+ Q + +
Sbjct: 3 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF-QNSSSKLPQPTFVVYMASSHN 61
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPS 336
D + + + LT+ E+ + C+ +S+
Sbjct: 62 KITWDEKLNSSKLFSAMRDTNNKYVLTLN-----KFSKEN-------EGYYFCSVISNSV 109
Query: 337 L 337
+
Sbjct: 110 M 110
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 34.8 bits (80), Expect = 0.018
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 182 ITIENLRKSDTGNYGCNATNSLG-YVYKDVYVNVL 215
+ + L++ D G YGC + G + V +N+L
Sbjct: 70 VEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL 104
Score = 28.3 bits (63), Expect = 3.5
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 17/104 (16%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRG----------SEPIDFESEPRFV---- 359
PE + G S +C+ +K VW R S R
Sbjct: 4 PEVLQAPVGSSILVQCH-YRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTD 62
Query: 360 -QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA-TLTVQVP 401
+ + E D+G+Y C +L + P
Sbjct: 63 LGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILPP 106
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 35.2 bits (80), Expect = 0.019
Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 32/125 (25%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLS-IVWLRGSEP----------------------- 349
+ EV AG + C+ + I WL+G+ P
Sbjct: 11 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 70
Query: 350 -------IDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATL-TVQVP 401
DF +L +T D G+Y C+ E +V +
Sbjct: 71 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 130
Query: 402 LEAPS 406
+ +
Sbjct: 131 VTGHT 135
Score = 34.8 bits (79), Expect = 0.032
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 79 RISQGNYGK-SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY 127
R S N +L + HV D G Y C+V+ + +D +
Sbjct: 83 RASVANLAAPTLRLTHVHPQDGGRYWCQVAQW-SIRTEFGLDAKSVVLKV 131
Score = 28.3 bits (62), Expect = 4.5
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 262 GRYTILETGD--LKITDVAFADSGEYTCFARNK-----LGTAQGSGSLTVKEHT 308
GR ++ L++T V D G Y C G S L V HT
Sbjct: 82 GRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT 135
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 36.3 bits (83), Expect = 0.020
Identities = 26/200 (13%), Positives = 60/200 (30%), Gaps = 18/200 (9%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR---GYKVQTWTEKD 447
++ P + + W + Y + E
Sbjct: 19 QSVNPGLKTNSSGEPKFTKCR-SPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWT 77
Query: 448 GEGSIRELIVNKGESTTTEVDKFVPASKNFA-RVLAFNGAYNGPPSEIISFVTPEGVPGT 506
E V+ GE++ F + + ++ + G + + V P+
Sbjct: 78 QEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIAL 137
Query: 507 VQSLEAIPLGSSAFYL--KWVKPEQPN----GVLMGYKIKYQSVKGTKVGPLLERLPYIS 560
+L + L + +W P + +++ Y+++Y+ V TK +
Sbjct: 138 NWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW-------KMMD 190
Query: 561 DPTTTSAKLAGLEPSTKYRI 580
TTS + L+ +Y +
Sbjct: 191 PILTTSVPVYSLKVDKEYEV 210
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 36.2 bits (83), Expect = 0.021
Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 9/138 (6%)
Query: 255 NQKELTGGRYTILETGDLK-----ITDVAFADSGEYTCFARNKLGTAQ---GSGSLTVKE 306
+++ GRY+ IT DS Y C T + G+G+
Sbjct: 57 DEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVF 116
Query: 307 HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
P Y++ +S+ +D + ++ + S+ + ++S D+
Sbjct: 117 PNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFK- 175
Query: 367 TVTKSSELDSGQYTCRAQ 384
+ + + + + C
Sbjct: 176 SNSAVAWSNKSDFACANA 193
Score = 28.9 bits (64), Expect = 5.6
Identities = 25/184 (13%), Positives = 52/184 (28%), Gaps = 31/184 (16%)
Query: 132 PEFINAAEEETVTFECK-ASGLPEPEIHW------------VHNGKPISQAPPNPRRKVG 178
I+ E+E VT +C + + W + Q + R
Sbjct: 10 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWN 69
Query: 179 PNR------ITIENLRKSDTGNYGCNATNSLGY--------VYKDVYVNVLAHAPEITEA 224
+ TI + D+ Y C + V+ N+ P + +
Sbjct: 70 FQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQL 129
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSG 283
+ V F + + +T + + D K + VA+++
Sbjct: 130 RDSK---SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKS 186
Query: 284 EYTC 287
++ C
Sbjct: 187 DFAC 190
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 35.4 bits (81), Expect = 0.021
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 245 APKPEVNWIHNQKELTGG-RYTI---LETG--DLKITDVAFADSGEYTCFARNKLGTAQG 298
+ +V++I N+KE+ G +Y + TG ++ + + D G YT ++ G A G
Sbjct: 65 SSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQD--GKATG 122
Query: 299 SGSLTV 304
+L +
Sbjct: 123 HSTLVL 128
Score = 35.0 bits (80), Expect = 0.026
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 125 APYFTVEPEF-INAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPP---NPRRKVGP 179
P + E + E+ V F +A L ++ ++ N K I + P + R G
Sbjct: 36 FPTVPTKSELAVEILEKGQVRFWMQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGI 95
Query: 180 NRITIENLRKSDTGNYGCNATN 201
+ +E L+ D G Y +
Sbjct: 96 IEMFMEKLQDEDEGTYTFQIQD 117
Score = 28.8 bits (64), Expect = 3.7
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAKS 115
+ ++ ++ D+G+YT ++ +G S
Sbjct: 97 EMFMEKLQDEDEGTYTFQIQDGKATGHS 124
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 33.9 bits (77), Expect = 0.028
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--IT 183
++ PE I+ E + C+ + P I P+ P+ +R + +R
Sbjct: 6 EMYSEIPEIIHMTEGRELVIPCRVT---SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFI 62
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYV 212
I N + G C AT + G++YK Y+
Sbjct: 63 ISNATYKEIGLLTCEATVN-GHLYKTNYL 90
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 34.2 bits (78), Expect = 0.035
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 132 PEFINAAEEETVTFECKASGLPE--PEIHWVHNGKP------ISQAPPNPRRKVGPNRI- 182
+ + + +T+T C+ + W ++ + P I
Sbjct: 17 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIW 76
Query: 183 ----------TIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVL 215
T+ +LR+ D+G+Y C S V K V ++
Sbjct: 77 DDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
Score = 33.4 bits (76), Expect = 0.078
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 17/104 (16%)
Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRG------------ 346
GS H+ + + + AGQ+ T RC SL W +
Sbjct: 2 EGSHHHHHHSQAQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTS 61
Query: 347 SEPIDFESEPRFV-----QSNDYSLTVTKSSELDSGQYTCRAQT 385
S+P RF + +++T+T E DSG Y CR
Sbjct: 62 SKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYR 105
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 35.3 bits (81), Expect = 0.040
Identities = 25/173 (14%), Positives = 50/173 (28%), Gaps = 23/173 (13%)
Query: 233 GKTVVLTCR--------VF-------GAPKPEVNWIHNQKELTGGRYTILETGD-----L 272
G + TC + +P+ N E GR + L
Sbjct: 15 GDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYL 74
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGS-LTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
I DS Y C G+G+ LTV + P Y++ +S+
Sbjct: 75 YIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNP-DPAVYQLRDSKSSDKSVCL 133
Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
+D + ++ + S+ + + + + + + + C
Sbjct: 134 FTDFDSQTNVSQSKDSDAY-ITDKTVLDMRSMDFKSNSAVAWSNKSDFACANA 185
Score = 32.6 bits (74), Expect = 0.28
Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 30/181 (16%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP------PNPRRKVGPNRI--- 182
P+ ++ E ++ F C +HW + +++P + RI
Sbjct: 7 PQSLHVQEGDSTNFTCSFPSSNFYALHWYRW-ET-AKSPEALFVMTLNGDEKKKGRISAT 64
Query: 183 ----------TIENLRKSDTGNYGCNATNSLGYVYK-----DVYVNVLAHAPEITEAPKD 227
I+ + D+ Y C + + V N+ P + +
Sbjct: 65 LNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDS 124
Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSGEYT 286
+ V F + + +T + + D K + VA+++ ++
Sbjct: 125 K---SSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSNKSDFA 181
Query: 287 C 287
C
Sbjct: 182 C 182
Score = 28.7 bits (64), Expect = 5.5
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 20/115 (17%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPI---------DFESEPR 357
+ P+ V+ G S F C+ S S ++ W R P D + + R
Sbjct: 3 VEQSPQSLHVQEGDSTNFTCSFPS--SNFYALHWYRWETAKSPEALFVMTLNGDEKKKGR 60
Query: 358 F-----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTVQVPLEAPS 406
+ L + S DS Y C T F +LTV ++ P
Sbjct: 61 ISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPD 115
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 35.0 bits (80), Expect = 0.055
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 24/190 (12%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW--------------IHNQKELTGGR 263
++ ++P+ +G L C W I + + GR
Sbjct: 2 QQKVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGR 61
Query: 264 YTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQ----GSGSLTVKEHTHITDQP 314
+T L I D +DS Y C A + AQ G G+ P
Sbjct: 62 FTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDP 121
Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
Y++ +S+ +D + ++ + S+ + ++S D+ + +
Sbjct: 122 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKS-NSAVAWS 180
Query: 375 DSGQYTCRAQ 384
+ + C
Sbjct: 181 NKSDFACANA 190
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 33.4 bits (76), Expect = 0.064
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 491 PSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPE---QPNGVLMGYKIKYQSVKGT 547
P + PE V +P + W P P + + ++Y+ +
Sbjct: 2 PLGSVKPDPPENV-----VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILD 56
Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHL 582
+ + T+ + +Y I +
Sbjct: 57 QWQHVEL-------SNGTAHTITDAYAGKEYIIQV 84
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 33.1 bits (76), Expect = 0.074
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLP 557
+P PG L LKW KPE G + Y ++ +
Sbjct: 9 SPIDPPGKPVPLNI---TRHTVTLKWAKPEYTGGFKITSYIVEKRD-LPNGRWLKANFSN 64
Query: 558 YISDPTTTSAKLAGLEPSTKYR 579
++GL Y
Sbjct: 65 ----ILENEFTVSGLTEDAAYE 82
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 32.2 bits (74), Expect = 0.082
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
P +L + +S+ L W GV GY + Y T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVGVT-GYDV-YNG--TALAT----------TVT 49
Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAG 589
T+A ++GL T Y + AG
Sbjct: 50 GTTATISGLAADTSYTFTVKAKDAAG 75
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 33.1 bits (76), Expect = 0.083
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLP 557
+ L + + ++W P+ L GY ++Y + L
Sbjct: 3 SGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDL- 61
Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
T + GL K + + AG
Sbjct: 62 ----IDKTKFTITGLPTDAKIFVRVKAVNAAGASEPK 94
Score = 28.9 bits (65), Expect = 2.1
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 419 AVVSWNPVSPQSLRGH-FRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF 477
+ W P P + GY ++ E + + + T + +K F
Sbjct: 24 VTMRWRP--PDHIGAAGLDGYVLEYCFEGTEDW--IVANKDLIDKTKFTITGLPTDAKIF 79
Query: 478 ARVLAFNGAYNGPPSEIISFV-TPEGVPGT 506
RV A N A P + E P +
Sbjct: 80 VRVKAVNAAGASEPKYYSQPILVKESGPSS 109
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 33.1 bits (76), Expect = 0.083
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKL-SIVWLR---GSEPIDFESEP-RFV-----QSND 363
P E G+S T C + D S L S W R G + S+ R+V S
Sbjct: 7 PRSVTKETGESLTINC-VLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKS 65
Query: 364 YSLTVTKSSELDSGQYTCRAQT 385
+SL + + D G Y C
Sbjct: 66 FSLRINDLTVEDGGTYRCGLGV 87
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 32.8 bits (74), Expect = 0.093
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKH 93
K V KK ++K+E+ + P + D + D +L IK
Sbjct: 30 KDVSVQWKKTEQGSHRKIEILNWYNDGPSWSNVSFSDIYGFDYGD--------FALSIKS 81
Query: 94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
+ D G Y E++N G+ + + L +L
Sbjct: 82 AKLQDSGHYLLEITNTGGKVCNKNFQLLIL 111
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 32.7 bits (75), Expect = 0.11
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 485 GAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQS 543
G+ G I + PG Q ++ + L W P+ + GY I+
Sbjct: 1 GSS-GSSGASID-IQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKAD 58
Query: 544 VKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
K E I TSA + L +Y + G ++
Sbjct: 59 KKSM------EWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDA 103
Score = 31.6 bits (72), Expect = 0.32
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
A + + P + V + ++W P GY +Q +K E
Sbjct: 7 GASIDIQIIDRPGPPQIVKIEDV-WGENVALTWTP-PKDDGNAAITGYTIQKADKKSMEW 64
Query: 451 SIRELIVNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEIISFVTPEGVPGTV 507
++ T+ + + V ++ F RV + N + + G +
Sbjct: 65 F---TVIEHYHRTSATITELVIGNEYYF-RVFSENMCGLSEDATMTKESAVIARDGKI 118
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 32.5 bits (74), Expect = 0.13
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 19/105 (18%)
Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLS-IVWLRG-----------SEPIDFESEPRFV- 359
+ G S + +C + + W R ++ + R
Sbjct: 2 KARTVAGPVGGSLSVQCPY--EKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSI 59
Query: 360 ----QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
+ +++T+ +E D+G Y C T + V+V
Sbjct: 60 RDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEV 104
Score = 31.0 bits (70), Expect = 0.41
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
+T+ENL + D G Y C + D V V
Sbjct: 70 VTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEV 102
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 33.8 bits (78), Expect = 0.13
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 46 LRNKKVELFC-IFGGTPLPQTI-WSKDGVPIN------PSDRISQGNYGKS--LIIKHVE 95
L K L C I P T+ W DG P+ + S Y S L +
Sbjct: 128 LSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARA 187
Query: 96 FSDQGSYTCEVSNG 109
+ SY+C+V++
Sbjct: 188 WERHSSYSCQVTHE 201
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 33.8 bits (77), Expect = 0.13
Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 52/213 (24%)
Query: 220 EITEAPKDEYTVDGKTVVLTCR-------VF-------GAPKPEVNWIH-------NQKE 258
IT++PK + +G+ V L+C ++ + I+ QK
Sbjct: 5 GITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLR----LIYYSQIVNDFQKG 60
Query: 259 LTGGRYTI----LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLT---VKEHTHIT 311
Y++ E+ L +T + Y C + ++ Q G T V E
Sbjct: 61 DIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNV 120
Query: 312 DQPEDY-------EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI------DFESEPRF 358
PE E+ Q AT C A + + W + + D +
Sbjct: 121 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 180
Query: 359 VQSND--YS----LTVTKSSELDSGQ-YTCRAQ 384
ND YS L V+ + + + C+ Q
Sbjct: 181 PALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ 213
Score = 32.7 bits (74), Expect = 0.33
Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 31/164 (18%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVH-------------NGKPISQAPPNPRR--- 175
P+++ E + VT C+ + L ++W Q
Sbjct: 10 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSV 68
Query: 176 ---KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV---YVNVLAHAPEITE------ 223
K +T+ + +K+ T Y C +++ Y + V +
Sbjct: 69 SREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVF 128
Query: 224 APKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
P + + L C G P E++W N KE+ G T
Sbjct: 129 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVST 172
Score = 29.2 bits (65), Expect = 4.1
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 14/108 (12%)
Query: 75 NPSDRIS---QGNYGKSLIIKHVEFSDQGSYTCEVSN--------GVGEAKSYSIDLSVL 123
+ ++ S + L + + + Y C S+ G G + + DL +
Sbjct: 61 DIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNV 120
Query: 124 AAPYFTV-EPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGKPISQ 168
P V EP + + T C A+G P+ E+ W NGK +
Sbjct: 121 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 168
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 33.8 bits (77), Expect = 0.14
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 19/90 (21%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPS------------LKLSIVWLRGSEPIDFESEP- 356
+ P ++ GQ T C+ VS+ ++ +V + ++
Sbjct: 5 VLQIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEF-LVNFYNGKVMEKSKLFK 63
Query: 357 -RF----VQSNDYSLTVTKSSELDSGQYTC 381
+F + ++L + ++ DS Y C
Sbjct: 64 DQFSVERPDGSYFTLKIQPTALEDSAVYFC 93
Score = 31.9 bits (72), Expect = 0.66
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 31/165 (18%)
Query: 132 PEFINAAEEETVTFECKASG----------LP--EPE-IHWVHNGKPISQAPPNPRR--- 175
P + VT C + + E + +NGK + ++ +
Sbjct: 9 PSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSV 68
Query: 176 ---KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEA-------- 224
+ I+ D+ Y C ++ Y + E +
Sbjct: 69 ERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAV 128
Query: 225 --PKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
P + + L C G P E++W N KE+ G T
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCT 173
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 33.5 bits (76), Expect = 0.16
Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 25/190 (13%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCR-------VF-------GAPKPEVNWIHNQKELTGGR 263
+ + E P+ +G+ + C + + N++E GR
Sbjct: 1 SQQGEEDPQALSIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGR 60
Query: 264 YTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQ---GSGS-LTVKEHTHITDQP 314
+ L IT AD+ Y C GT + G+G+ L V + P
Sbjct: 61 LRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQ-NPDP 119
Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
Y++ +S+ +D + ++ + S+ + ++S D+ + + +
Sbjct: 120 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFK-SNSAVAWS 178
Query: 375 DSGQYTCRAQ 384
+ + C
Sbjct: 179 NKSDFACANA 188
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 32.6 bits (74), Expect = 0.17
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 488 NGPPSEIISFVTPEGVPGT-VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKG 546
+G E + ++T P E + W + + Y+++Y G
Sbjct: 3 SGSSGEGLDYLT---APNPPSIREELCTASHDTITVHW-ISDDEFSIS-SYELQYTIFTG 57
Query: 547 TK----VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAG 589
+ ++ + + + GL+ T+Y + +AG
Sbjct: 58 QANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG 104
Score = 29.5 bits (66), Expect = 1.5
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 4/100 (4%)
Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH---FRGYKVQTWTEKDGEGSIRE 454
+ P PS + V W S+ + + + Q
Sbjct: 13 LTAP-NPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSW 71
Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 494
+IV + V ++ V A N A +
Sbjct: 72 MIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPT 111
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 33.5 bits (77), Expect = 0.19
Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 28/144 (19%)
Query: 281 DSGEYTCFARNKLGTA-------QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS 333
DS Y C AR + QG+ ++TV +T P V G A+ C +
Sbjct: 90 DSAVYYC-ARYDYYGSSYFDYWGQGT-TVTVSSDIELTQTPLSLPVSLGDQASISCRSSQ 147
Query: 334 DPSLKLSIVWLR------GSEP---IDFESE------PRFVQS---NDYSLTVTKSSELD 375
+L G P I S RF S D++L +++ D
Sbjct: 148 SIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED 207
Query: 376 SGQYTCRAQTELDFIEAQAT-LTV 398
G Y C + + + T L +
Sbjct: 208 LGVYYCFQGSHVPYTFGGGTKLEI 231
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 33.1 bits (75), Expect = 0.21
Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 25/190 (13%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF----RGYKVQTWTEKDGEGSIRELI 456
P + + Q + + +++W+ + + + Y + W K G I
Sbjct: 4 PSDLLQHVK-FQSSNFE-NILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKS 61
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
N T + + +ARV A + F + + + I
Sbjct: 62 CNLTVETGNLTELY------YARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKV 115
Query: 517 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT--------TTSAK 568
S + P G+++ + + L L + T +
Sbjct: 116 RSI-QMIVHPTPTPIRAGDGHRLTLEDIFHD----LFYHLELQVNRTYQMHLGGKQREYE 170
Query: 569 LAGLEPSTKY 578
GL P T++
Sbjct: 171 FFGLTPDTEF 180
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 33.0 bits (75), Expect = 0.23
Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 30/183 (16%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHW---VHNGKPI--------SQAPPNPRRKVGPN 180
P ++ E E + C + + W + + R +
Sbjct: 7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLD 66
Query: 181 R------ITIENLRKSDTGNYGCNATNSLGYVYKDVYV---------NVLAHAPEITEAP 225
+ + I + D+ Y C + G Y + + P + +
Sbjct: 67 KSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLR 126
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSGE 284
+ + V F + + +T + + D K + VA+++ +
Sbjct: 127 RSK---SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSD 183
Query: 285 YTC 287
+ C
Sbjct: 184 FAC 186
Score = 29.6 bits (66), Expect = 3.3
Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 31/179 (17%)
Query: 233 GKTVVLTCR--------VF-------GAPKPEVNWIHNQKELTGGRYTILETGD-----L 272
G+ +VL C + + +Q+E T GR L
Sbjct: 15 GENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTL 74
Query: 273 KITDVAFADSGEYTCFARNKLGTAQ----GSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328
I DS Y C R G + G G+ + P Y++ +S+
Sbjct: 75 YIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRRSKSSDKS 134
Query: 329 CNAVSDPSLKLSIVWLRGSEPIDFES---EPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
+D + ++ + S+ + + R + S + + C
Sbjct: 135 VCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAW----SNKSDFACANA 189
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 32.8 bits (74), Expect = 0.29
Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 21/174 (12%)
Query: 233 GKTVVLTCR--------VF-------GAPKPEVNWIHNQKELTGGRYTILETGD-----L 272
G+ VL C + + + + + GRY+ D L
Sbjct: 16 GENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTL 75
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV 332
IT D+ Y C ++ GSG+ + +P Y+++ +S
Sbjct: 76 HITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPAVYQLKDPRSQDSTLCLF 135
Query: 333 SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTE 386
+D ++++ S + +++ D + + + +TC+ +
Sbjct: 136 TDFDSQINVPKTMESGTFITDKCVLDMKAMDSK-SNGAIAWSNQTSFTCQDIFK 188
Score = 32.0 bits (72), Expect = 0.60
Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 26/179 (14%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHW---VHNGKPI--------SQAPPNPRRKVGPN 180
P+ + + E +C S P+ + W + N R +
Sbjct: 8 PQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLD 67
Query: 181 R------ITIENLRKSDTGNYGCNATNSLGYVY-----KDVYVNVLAHAPEITEAPKDEY 229
+ + I DT Y C + ++ V + P + +
Sbjct: 68 KDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPAVYQLKDPR- 126
Query: 230 TVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSGEYTC 287
+ + F + + + +T ++ D K +A+++ +TC
Sbjct: 127 --SQDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTC 183
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 31.2 bits (70), Expect = 0.30
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 249 EVNWIHNQ---------KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
EV W L G + IL GDLKI ++ DSG Y + GT
Sbjct: 29 EVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT 84
Score = 27.3 bits (60), Expect = 5.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVL 123
L IK++ D G+Y V + G ++DL +L
Sbjct: 60 DLKIKNLTRDDSGTYNVTVYSTNGTRILDKALDLRIL 96
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 32.8 bits (75), Expect = 0.32
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 69 KDGVPINPSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVS 107
K GV + S Y S L + ++ SY+C+V+
Sbjct: 179 KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT 219
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 31.3 bits (71), Expect = 0.34
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 182 ITIENLRKSDTGNYGC---NATNSLGYVYKDVYVNV 214
+ + NL+ D+G Y C ++ + + V
Sbjct: 78 VRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 30.8 bits (70), Expect = 0.38
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ 378
V G + T RC+ P + + + + + + ++S VT D+G
Sbjct: 16 VSLGDTVTLRCHL---PRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLE--DAGT 70
Query: 379 YTCRAQT 385
Y CR Q
Sbjct: 71 YQCRYQV 77
Score = 27.4 bits (61), Expect = 7.4
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 8/62 (12%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKE----LTGGRYTILETGDLKITDVAFADSGEYTCF 288
G TV L C + W+ + + + D+G Y C
Sbjct: 19 GDTVTLRCHL----PRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCR 74
Query: 289 AR 290
+
Sbjct: 75 YQ 76
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 32.7 bits (74), Expect = 0.39
Identities = 20/110 (18%), Positives = 30/110 (27%), Gaps = 23/110 (20%)
Query: 293 LGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPS------------LKLS 340
G G +K + P GQ A RC K
Sbjct: 17 KGGGGSGGGGGMK----VIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKF- 71
Query: 341 IVWLRGSEPIDFESEP--RF----VQSNDYSLTVTKSSELDSGQYTCRAQ 384
++ + E + RF ++ SL + S DS Y C +
Sbjct: 72 LINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASS 121
Score = 30.4 bits (68), Expect = 1.9
Identities = 26/137 (18%), Positives = 41/137 (29%), Gaps = 24/137 (17%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQ----GSGSLTVKEHTHITDQPE-------DYEVE 320
L+I DS Y C + L V E PE + E+
Sbjct: 103 LEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEIS 162
Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPI------DFESEPRFVQSND--YS----LTV 368
Q AT C A + + W + + D + ND Y+ L V
Sbjct: 163 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRV 222
Query: 369 TKSSELDSG-QYTCRAQ 384
+ + + + C+ Q
Sbjct: 223 SATFWQNPRNHFRCQVQ 239
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 32.2 bits (73), Expect = 0.45
Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 25/184 (13%)
Query: 233 GKTVVLTCRVFGAPKPEVNW--------------IHNQKELTGGRYTILETGD-----LK 273
G V + C + + W GR++ + L
Sbjct: 14 GAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLL 73
Query: 274 ITDVAFADSGEYTCFARNKLGTAQ---GSGSLTVKEHTHITD-QPEDYEVEAGQSATFRC 329
+ ++ DS Y C + G+ G G ++ H +I + P Y++ +S+
Sbjct: 74 LKELQMKDSASYLCAVQASGGSYIPTFGRG-TSLIVHPYIQNPDPAVYQLRDSKSSDKSV 132
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
+D + ++ + S+ + ++S D+ + + + + + C
Sbjct: 133 CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDF-KSNSAVAWSNKSDFACANAFNNSI 191
Query: 390 IEAQ 393
I
Sbjct: 192 IPED 195
Score = 28.7 bits (64), Expect = 5.8
Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 34/184 (18%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWV--HNGKP----ISQAPPNPRRKVGPNRI--- 182
P + A E V C + W H G+ R
Sbjct: 6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNV---LDGLEEKGRFSSF 62
Query: 183 ----------TIENLRKSDTGNYGCNATNSLGYVY--------KDVYVNVLAHAPEITEA 224
++ L+ D+ +Y C S G V+ + P + +
Sbjct: 63 LSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQL 122
Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSG 283
+ V F + + +T + + D K + VA+++
Sbjct: 123 RDSK---SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKS 179
Query: 284 EYTC 287
++ C
Sbjct: 180 DFAC 183
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 32.5 bits (74), Expect = 0.53
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 22 TGISASQNRHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTI-WSKDGVPIN---- 75
+ S + Q Y L +V L C + G P + W +G P N
Sbjct: 231 SSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT 290
Query: 76 -PSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSN 108
P S G++ L + + ++C V +
Sbjct: 291 TPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH 326
Score = 31.0 bits (70), Expect = 1.6
Identities = 56/324 (17%), Positives = 92/324 (28%), Gaps = 94/324 (29%)
Query: 141 ETVTFECKASG--LPEPEIHWVHNGKPISQAP------------------PNPRRKVGPN 180
+V CKASG + IHWV Q P N R K
Sbjct: 16 ASVKISCKASGYTFTDHAIHWVK------QNPGQRLEWIGYFSPGNDDFKYNERFK---G 66
Query: 181 RITI-------------ENLRKSDTGNYGCNATNSLGYVYKDVYVNV---LAHAPEITEA 224
+ T+ +LR DT Y C + ++ Y + V V P +
Sbjct: 67 KATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPL 126
Query: 225 PKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELT------------GGRYTILETG 270
+ G T L C V P+P V+W N LT G Y++
Sbjct: 127 APSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVV 184
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ----------------- 313
+ + + + Y C +K + + K
Sbjct: 185 TVPSSSLG---TQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPR 241
Query: 314 -------PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR-GSEPIDFESEPRFVQSND-Y 364
P + + C +++ W G ++++ P + S+ +
Sbjct: 242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF 301
Query: 365 S----LTVTKSSELDSGQYTCRAQ 384
LTV KS ++C
Sbjct: 302 FLYSKLTVDKSRWQQGNVFSCSVM 325
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 31.8 bits (71), Expect = 0.55
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 484 NGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQS 543
NGA + GV +LE + ++ + W Y+I Y
Sbjct: 84 NGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYGVS---YYRITYGE 140
Query: 544 VKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
G P+ E + ++++A ++GL+P Y I + Y+
Sbjct: 141 TGGN--SPVQE---FTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYS 187
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 31.9 bits (72), Expect = 0.56
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 19/93 (20%)
Query: 310 ITDQPEDYEVEAGQSATFRCNAVS----------DP--SLKLSIVWLRGSEPIDFESEP- 356
++ P + E G+ RC+ +S + +++ +G+ D P
Sbjct: 29 VSQTPSNKVTEKGKYVELRCDPISGHTALYWYRQSLGQGPEF-LIYFQGTGAADDSGLPN 87
Query: 357 -RF----VQSNDYSLTVTKSSELDSGQYTCRAQ 384
RF + + +L + ++ DS Y C
Sbjct: 88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATS 120
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 32.2 bits (72), Expect = 0.58
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY---SLTVTK 370
++ EV AGQ ATF+C+A+ +WL+G + D + V S+ S V
Sbjct: 171 IQNVEVNAGQFATFQCSAIGRTVAG-DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVN 229
Query: 371 SSELDSGQYTCRAQTE 386
+++ D+G+Y C +TE
Sbjct: 230 TTKRDAGKYRCMIRTE 245
Score = 29.5 bits (65), Expect = 3.9
Identities = 11/56 (19%), Positives = 17/56 (30%)
Query: 67 WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
P+ S + S + + D G Y C + G S +L V
Sbjct: 203 IDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 30.7 bits (69), Expect = 0.66
Identities = 21/121 (17%), Positives = 30/121 (24%), Gaps = 35/121 (28%)
Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPE--------VNWIHN------------------Q 256
+G V + C F P W
Sbjct: 11 TMQSSVTVQEGMCVHVRCS-FSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAV 69
Query: 257 KELTGGRYTIL-----ETGDLKITDVAFADSGEYTCFARN---KLGTAQGSGSLTVKEHT 308
+E T R+ +L + L I D +D+G Y K S+ V T
Sbjct: 70 QEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALT 129
Query: 309 H 309
H
Sbjct: 130 H 130
Score = 29.5 bits (66), Expect = 1.7
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 26/115 (22%)
Query: 312 DQPEDYEVEAGQSATFRCN-----AVSDPSLKLSIVWLRGSE------PIDFESEPRFV- 359
V+ G RC+ S + W R P+ + V
Sbjct: 11 TMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQ 70
Query: 360 -------------QSNDYSLTVTKSSELDSGQYTCRAQTE-LDFIEAQATLTVQV 400
Q+ + +L++ + D+G+Y R + + + L+V V
Sbjct: 71 EETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
Score = 29.5 bits (66), Expect = 1.8
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 88 SLIIKHVEFSDQGSYTCEVSNGVGE--AKSYSIDLSVLAAP 126
+L I+ SD G Y + G + K + ++V A
Sbjct: 89 TLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALT 129
Score = 28.8 bits (64), Expect = 2.9
Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 33/127 (25%)
Query: 126 PYFTVE-PEFINAAEEETVTFECKASGLPEPE-------IHWVHNGKPISQAPP----NP 173
+++ + E V C S + + +W G IS P NP
Sbjct: 6 KDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNP 65
Query: 174 RRKVGP---NRIT-------------IENLRKSDTGNYGCNA-TNSLGYVYKD----VYV 212
V +R I + R SD G Y ++ + YK V V
Sbjct: 66 AWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
Query: 213 NVLAHAP 219
L H P
Sbjct: 126 TALTHRP 132
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 30.6 bits (68), Expect = 0.75
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 55 CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQ-GSYTCEVSNGVGEA 113
F G T+ + ++ +G+ SL + + G+YTCEV+ E
Sbjct: 48 YTFDGALNKSTVPTDFSSAKIEVSQLLKGDA--SLKMDKSDAVSHTGNYTCEVTELTREG 105
Query: 114 KSYSIDLSVLAAPYFT 129
++ I+L + T
Sbjct: 106 ET-IIELKYRVVSWST 120
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 31.5 bits (71), Expect = 0.75
Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 27/177 (15%)
Query: 233 GKTVVLTCR---------VF-------GAPKPEVNWIHNQKELTGGRYTILETGD---LK 273
+ V L C + P+ ++ + + I E L
Sbjct: 14 EEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLI 73
Query: 274 ITDVAFADSGEYTCFARNKLGTAQ-----GSGS-LTVKEHTHITDQPEDYEVEAGQSATF 327
+ D+ Y C GT+ G G+ LTV + P Y++ +S+
Sbjct: 74 LHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQ-NPDPAVYQLRDSKSSDK 132
Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
+D + ++ + + + + + + + + + C
Sbjct: 133 SVCLFTDFDSQTNVSQSK-DSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANA 188
Score = 30.7 bits (69), Expect = 1.4
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 16/86 (18%)
Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPI---------DFESEPRF 358
T QP E + CN S S I W R P
Sbjct: 3 TTQPNSMESNEEEPVHLPCNH-STISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASL 61
Query: 359 VQS---NDYSLTVTKSSELDSGQYTC 381
+ +L + +++ D+ Y C
Sbjct: 62 AIAEDRKSSTLILHRATLRDAAVYYC 87
Score = 30.3 bits (68), Expect = 1.5
Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 30/183 (16%)
Query: 132 PEFINAAEEETVTFECKASGL-PEPEIHW---VHNGKPI------SQAPPNPRRKVGPNR 181
P + + EEE V C S + IHW + + P + N +
Sbjct: 6 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE 65
Query: 182 ------ITIENLRKSDTGNYGCNATNSLGYVYKD----------VYVNVLAHAPEITEAP 225
+ + D Y C + G Y V+ N+ P + +
Sbjct: 66 DRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLR 125
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSGE 284
+ V F + + +T + + D K + VA+++ +
Sbjct: 126 DSK---SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSD 182
Query: 285 YTC 287
+ C
Sbjct: 183 FAC 185
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 30.0 bits (68), Expect = 0.80
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFG--APKPEVNWIHNQKELTGGRYTIL 267
P+I + GK +L C V P E+ + N K++ + +
Sbjct: 4 TPQIQVYSRHPPEN-GKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDM 54
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 31.5 bits (72), Expect = 0.81
Identities = 39/179 (21%), Positives = 56/179 (31%), Gaps = 46/179 (25%)
Query: 262 GRYTILETGD-------LKITDVAFADSGEYTCFARNKL-------------------GT 295
R +I T D L++ V+ D+ Y C + G
Sbjct: 73 SRISI--TRDTSKNQVYLQLKSVSSEDTATYYC-SYFDSDDYAMEYWGQGTSVTVSGGGG 129
Query: 296 AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR---GSEP--- 349
+ G GS +T P G+ T C+A S + W + GS P
Sbjct: 130 SGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSA-SSSVSSSHLYWYQQKPGSSPKLW 188
Query: 350 IDFESE------PRFVQS---NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQAT-LTV 398
I S RF S YSLT++ D+ Y C + F T L +
Sbjct: 189 IYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEI 247
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 31.8 bits (72), Expect = 0.87
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 76 PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFI 135
P D +++ SL + V D+G + C+ N G+ + + V P +PE +
Sbjct: 421 PWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG---KPEIV 477
Query: 136 NAAEEETVTFECKA------SGLPEPEIHWVHNGKPI 166
++A E T K P + W +GKP+
Sbjct: 478 DSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPL 514
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 30.2 bits (68), Expect = 0.90
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 182 ITIENLRKSDTGNYGC---NATNSLGYVYKDVYVNV 214
+ + NL+ D+G Y C ++ + + V
Sbjct: 83 VRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 118
Score = 27.5 bits (61), Expect = 8.2
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 23/108 (21%)
Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE---------------SEPRF 358
E YE++ GQ+ +C+ + W + + R
Sbjct: 11 EEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRI 70
Query: 359 V-----QSNDYSLTVTKSSELDSGQYTC---RAQTELDFIEAQATLTV 398
+ + + DSG Y C + E + + L V
Sbjct: 71 ILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 118
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 31.6 bits (71), Expect = 0.95
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 357 RFVQSNDYS---LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
F ++ +S T+ + DSG + C T +E ++V+V
Sbjct: 375 DFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVL 422
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 29.7 bits (67), Expect = 1.1
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 23/95 (24%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPE-PEIHWVHNGKPISQAPP-------NPRRKVGPN 180
T P ++ +E TF C S E ++W + P S + V
Sbjct: 3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNW-NRLSP-SNQTEKQAAFSNGLSQPVQDA 60
Query: 181 R-------------ITIENLRKSDTGNYGCNATNS 202
R + I + R++D+G Y C A +
Sbjct: 61 RFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL 95
Score = 29.3 bits (66), Expect = 1.7
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 19/85 (22%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPIDF----------ESEPRFVQS---- 361
V G +ATF C+ S+ S L + W R ++ + RF
Sbjct: 11 VSEGANATFTCSL-SNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPN 69
Query: 362 -NDYSLTVTKSSELDSGQYTCRAQT 385
+D+ + + + DSG Y C A +
Sbjct: 70 RHDFHMNILDTRRNDSGIYLCGAIS 94
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 30.0 bits (68), Expect = 1.1
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 312 DQ-PEDYEVEAGQSATFRCNAVSDPSLKL-SIVWLR---GSEPIDFESEP-RFVQS---- 361
DQ P+ E G+S T C V D L + W R GS + S+ R+V++
Sbjct: 4 DQTPQRITKETGESLTINC-VVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRG 62
Query: 362 -NDYSLTVTKSSELDSGQYTCRAQT 385
+SL + + DSG Y C+ ++
Sbjct: 63 SKSFSLRINDLTVKDSGTYRCKPES 87
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 30.8 bits (69), Expect = 1.2
Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 16/142 (11%)
Query: 255 NQKELTGGRYTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQ----GSGSLTVK 305
+ K + L+ + +DS Y C + G G+
Sbjct: 53 DNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSV 112
Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES---EPRFVQSN 362
+P Y+++ +S +D ++++ S + + + + S
Sbjct: 113 VPNIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSK 172
Query: 363 DYSLTVTKSSELDSGQYTCRAQ 384
+ + +TC+
Sbjct: 173 SNGAI----AWSNQTSFTCQDI 190
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 29.8 bits (67), Expect = 1.4
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 23/118 (19%)
Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR---GSEP---IDFES-------EPR 357
T P V G +ATF C+ S+ S L + W R ++ F + + R
Sbjct: 13 TFYPAWLTVSEGANATFTCSL-SNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDAR 71
Query: 358 FVQSN-----DYSLTVTKSSELDSGQYTCRAQT---ELDFIEAQAT-LTVQVPLEAPS 406
F D+ + + + DSG Y C A + + E+ L V + S
Sbjct: 72 FQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILETS 129
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 30.5 bits (69), Expect = 1.9
Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 12/124 (9%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGS-LTVKEHT---HITDQPEDYEVEAGQSATF 327
LKI+ V D G Y C + G+G+ L +K ++ P E A+
Sbjct: 115 LKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASV 174
Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRF--VQSND--YS----LTVTKSSELDSGQY 379
C + +++ W + S D YS LT+TK Y
Sbjct: 175 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY 234
Query: 380 TCRA 383
TC A
Sbjct: 235 TCEA 238
Score = 30.1 bits (68), Expect = 2.2
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 43 EVALRNKKVELFC-IFGGTPLPQTI-WSKDGVPIN-------PSDRISQGNYGKS--LII 91
L + + C + P + W DG Y S L +
Sbjct: 164 SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL 223
Query: 92 KHVEFSDQGSYTCEVSN 108
E+ SYTCE ++
Sbjct: 224 TKDEYERHNSYTCEATH 240
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 29.0 bits (65), Expect = 2.1
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYTIL 267
P+I + GK +L C V P E+ + N K++ + +
Sbjct: 24 TPQIQVYSRHPPEN-GKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDM 74
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD;
1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A*
2xn0_A*
Length = 732
Score = 30.8 bits (69), Expect = 2.1
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 555 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL----FYVPFKNPD 606
+ + P T KLAGL+P +Y+ GD L FY P + D
Sbjct: 670 NVMAHAQPYCTKTKLAGLDPDKRYKNLETDEVFGGD-----ELMHLGFYDPIERGD 720
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 29.8 bits (67), Expect = 2.2
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 20/93 (21%)
Query: 233 GKTVVLTCR--------VF-------GAPKPEVNWIHNQKELTGGRYTILETGD-----L 272
G+T +L C +P + + GR+TI L
Sbjct: 15 GETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSL 74
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
I D DS Y C A + L VK
Sbjct: 75 HIADSQPGDSATYFCAASDNRIFFGDGTQLVVK 107
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 29.6 bits (67), Expect = 2.7
Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 34/157 (21%)
Query: 141 ETVTFECKASG-LPEPEIHWVHNGKPISQAP---------PNPRRKVG-PNR-------- 181
+ C + I W +P + P + G P+R
Sbjct: 16 ASAKLTCTLNSQHSTYTIEWYQQ-QP-LKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGA 73
Query: 182 ---ITIENLRKSDTGNYGCNATNSLGYVYKDVY-----VNVLAH---APEITEAPKDEYT 230
++I N++ D Y C +++ + V+ V VL P +T P
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE 133
Query: 231 VDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
+ L C + +P V W N +T G T
Sbjct: 134 LKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDT 170
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 29.7 bits (67), Expect = 2.9
Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 36/181 (19%)
Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAP-----PNPRRKVG-PNR-----------IT 183
+ T C L + +HW K QAP + RR G P+ +T
Sbjct: 16 QKATITCSGDKLSDVYVHWYQQ-KA-GQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLT 73
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDV---YVNVL---AHAPEITEAPKDEYTVDGKTVV 237
I + D +Y C + + + V VL AP +T P +
Sbjct: 74 ISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQAT 133
Query: 238 LTCRV--FGAPKPEVNWIHNQKELTGGRYTILETGD---------LKITDVAFADSGEYT 286
L C + F V W + +T G T + L +T A+ +
Sbjct: 134 LVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFI 193
Query: 287 C 287
C
Sbjct: 194 C 194
Score = 28.9 bits (65), Expect = 5.4
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 46 LRNKKVELFC-IFGGTPLPQTI-WSKDGVPI-----NPSDRISQGNYGKS--LIIKHVEF 96
L+ + L C I G P + W DG PI S Y + L + +
Sbjct: 127 LKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAW 186
Query: 97 SDQGSYTCEVSNG 109
+ ++ C+V++G
Sbjct: 187 KSRNTFICKVTHG 199
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 29.7 bits (67), Expect = 3.4
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 46 LRNKKVELFC-IFGGTPLPQTI-WSKDGVPINPSDRISQ-------GNYGKS--LIIKHV 94
L + + C + P + W DG S Y S L +
Sbjct: 163 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKD 222
Query: 95 EFSDQGSYTCEVSN 108
E+ SYTCE ++
Sbjct: 223 EYERHNSYTCEATH 236
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 29.3 bits (66), Expect = 3.4
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 43 EVALRNKKVELFC-IFGGTPLPQTI-WSKDGVPIN------PSDRISQGNYGKS--LIIK 92
L+ K L C I P T+ W D P+ + S Y S L +
Sbjct: 121 SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLT 180
Query: 93 HVEFSDQGSYTCEVSNG 109
++ SY+C+V++
Sbjct: 181 PEQWKSHRSYSCQVTHE 197
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 28.6 bits (64), Expect = 3.5
Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLR---GSEP---IDFES---EPRFVQSNDYSLTVT 369
E G+S T C W R GS I E S +SL ++
Sbjct: 12 KETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRIS 71
Query: 370 KSSELDSGQYTCRA 383
DSG Y C+A
Sbjct: 72 DLRVEDSGTYKCQA 85
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 29.2 bits (65), Expect = 3.5
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 32/182 (17%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP------PNPRRKVGPNRI--- 182
P+F++ E E +T C +S + W +P + P R+
Sbjct: 8 PQFLSIQEGENLTVYCNSSS-VFSSLQWYRQ-EP-GEGPVLLVTVVTGGEVKKLKRLTFQ 64
Query: 183 ----------TIENLRKSDTGNYGCNATNSLGY------VYKDVYVNVLAHAPEITEAPK 226
I + DTG Y C S G V N+ P + +
Sbjct: 65 FGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQLRD 124
Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK-ITDVAFADSGEY 285
+ V F + + +T + + D K + VA+++ ++
Sbjct: 125 SK---SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDF 181
Query: 286 TC 287
C
Sbjct: 182 AC 183
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 28.0 bits (63), Expect = 3.8
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLR---GSEPIDFESEP-RFVQS-----NDYSLTVT 369
E G+S T C S W R GS S R+ ++ N SLT+
Sbjct: 12 KETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIR 71
Query: 370 KSSELDSGQYTCRAQT 385
DSG Y C+A
Sbjct: 72 DLRVEDSGTYKCKAYR 87
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 28.1 bits (63), Expect = 3.8
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 11/75 (14%)
Query: 233 GKTVVLTCRVFGAPKP--------EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
G V CR P E +N E +I V+ ++G
Sbjct: 23 GSHVTFVCR---GPVGVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGP 79
Query: 285 YTCFARNKLGTAQGS 299
Y C ++ S
Sbjct: 80 YRCIYYKPPKWSEQS 94
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 29.7 bits (66), Expect = 4.4
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDP-SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
+ AG + + + SDP L+ W E + S+ S
Sbjct: 341 DANEAVMYLNASAGSTVSLDASGSSDPDGDSLNYSWSHYGEADSYSGSVSISNSSSASAN 400
Query: 368 VTKSSELDSGQYT 380
V S
Sbjct: 401 VQIPSNAGGKDIH 413
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 29.2 bits (66), Expect = 4.5
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 46 LRNKKVELFC-IFGGTPLPQTI-WSKDGVPIN---PSDRISQ--GNYGKS--LIIKHVEF 96
LR K L C + P T+ W +G IN + + S+ NY S L + ++
Sbjct: 126 LRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQW 185
Query: 97 SDQGSYTCEVSNG 109
+C+V++
Sbjct: 186 KSHNRVSCQVTHE 198
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 29.4 bits (65), Expect = 4.5
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
P +E S V + + G + A KW Q + G +
Sbjct: 258 HPKNEAKSVVKQDRLLGLLMPFRAFG----DVKFKWSIDLQKRVIESGPDQLNDNEYTKF 313
Query: 549 VGPLLERLPYIS-DPTTTSAKL 569
+ P PY++ +P T +L
Sbjct: 314 IPPNYHTPPYLTAEPEVTYHRL 335
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium, hydrolase; 2.70A {Lactobacillus brevis}
Length = 745
Score = 29.3 bits (65), Expect = 5.3
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYL----FYVPFKNPDNVE 609
GL P+ +Y+I+ T GD L ++VP D E
Sbjct: 683 YFKGLRPNQRYQINDDPSTYYGD-----ELMNAGYFVPTILADGQE 723
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 29.2 bits (65), Expect = 5.5
Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 55 CIFGGTPLPQTIWSKDGVPIN-----PSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVS 107
I P Q W D V ++ P + + L I H ++ + + C V+
Sbjct: 369 DISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVN 428
Query: 108 NGVGEA---KSYSIDLSVLAAPYFTVEPEFINAAEE---ETVTFECKASGLPEPEIH--W 159
+ A K+ S AP P E+ + V+ C + +I W
Sbjct: 429 SAAFPAPIEKTISKTKGRPKAPQLYTIPP---PKEQMAKDKVSLTCMITDFFPEDITVEW 485
Query: 160 VHNGKPISQ 168
NG+P
Sbjct: 486 QWNGQPAEN 494
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 27.7 bits (62), Expect = 5.8
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 18/80 (22%)
Query: 319 VEAGQSATFRC-------NAVS----DP--SLKLSIVWLRGSEPIDFESEP--RFV--QS 361
V GQ+ RC +S D L+ + LR + +S P ++ +
Sbjct: 13 VPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQW-LFTLRSPGDKEVKSLPGADYLATRV 71
Query: 362 NDYSLTVTKSSELDSGQYTC 381
D L + ++ C
Sbjct: 72 TDTELRLQVANMSQGRTLYC 91
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL;
1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Length = 720
Score = 29.3 bits (65), Expect = 6.3
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 9/43 (20%)
Query: 568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYL----FYVPFKNPD 606
+L GL+P Y +G +G L +P +
Sbjct: 672 RLRGLKPDAVYLEEQSGRQYSGA-----ALMHAGIPLPPFTEE 709
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 28.5 bits (64), Expect = 7.3
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 294 GTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD------------PSLKLSI 341
G + G GS +T P G+ T C+A S S KL
Sbjct: 149 GGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSVSYMHWFQQKPGTSPKL-- 206
Query: 342 VWLRGSEPIDFESEPRFVQS---NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQAT-LT 397
W+ + + RF S YSLT+++ D+ Y C+ ++ T L
Sbjct: 207 -WIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLE 265
Query: 398 V 398
+
Sbjct: 266 L 266
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 27.8 bits (61), Expect = 7.7
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPV----SPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
P P + T+ + VSW P + S + GY V G+ + E+I
Sbjct: 17 PPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA----KGQ-RVAEVI 71
Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
+ST E+ + V + S + + VP T
Sbjct: 72 FPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPT 121
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 28.5 bits (64), Expect = 8.0
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 129 TVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAP-----PNPRRKVG-PNR 181
T P ++ + E TF C++S + + W + KP QAP R G +R
Sbjct: 153 TQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQH-KP-GQAPRLVIHGVSNRASGISDR 210
Query: 182 I-----------TIENLRKSDTGNYGCNATNSLGYVY 207
TI + D Y C + Y +
Sbjct: 211 FSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTF 247
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 28.4 bits (64), Expect = 8.1
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 27/100 (27%)
Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP---PNPRRKVGPNR---- 181
T P ++ + E T C+AS + W Q P P P R
Sbjct: 139 TQSPATLSLSPGERATLSCRASQSVRSNLAWY------QQKPGQAPRPLIYDASTRATGI 192
Query: 182 --------------ITIENLRKSDTGNYGCNATNSLGYVY 207
+TI L D Y C ++ +
Sbjct: 193 PDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTF 232
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 27.3 bits (61), Expect = 9.5
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQ-----GSG-SLTVK 305
L IT DS Y C R G + G+G L+VK
Sbjct: 76 LIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGTLLSVK 115
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A
{Saccharomyces cerevisiae} SCOP: b.1.8.1
Length = 140
Score = 27.5 bits (61), Expect = 10.0
Identities = 11/63 (17%), Positives = 17/63 (26%)
Query: 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVI 620
+ T + G+ + Y + G ES + F P NL
Sbjct: 35 NKTLFDITVNGVPEAGNYHASIHEKGDVSKGVESTGKVWHKFDEPIECFNESDLGKNLYS 94
Query: 621 SWT 623
T
Sbjct: 95 GKT 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.394
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,453,729
Number of extensions: 700770
Number of successful extensions: 4983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2594
Number of HSP's successfully gapped: 1418
Length of query: 745
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 644
Effective length of database: 3,881,772
Effective search space: 2499861168
Effective search space used: 2499861168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.3 bits)