BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11705
         (81 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9W3T5|SMIM4_DROME Small integral membrane protein 4 OS=Drosophila melanogaster
          GN=CG32736 PE=1 SV=1
          Length = 79

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG+K FG+YRFLPLFF +GA LEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEER 71
             EE+
Sbjct: 62 NYVEEQ 67


>sp|Q8C1Q6|SMIM4_MOUSE Small integral membrane protein 4 OS=Mus musculus GN=Smim4 PE=3
          SV=2
          Length = 80

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 9/79 (11%)

Query: 5  FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQA 64
          F   +++R L+  PG++ FGIYRFLP FF +G A+E+ MIK  V  G+  FY  Y+R   
Sbjct: 2  FSRAQVRRALQRVPGKQRFGIYRFLPFFFVLGGAMEWIMIK--VRVGQETFYDVYRRK-- 57

Query: 65 VILAEER--LSKLEQTSTT 81
             A ER    +LE TS T
Sbjct: 58 ---ASERQYQRRLEDTSET 73


>sp|Q8WVI0|SMIM4_HUMAN Small integral membrane protein 4 OS=Homo sapiens GN=SMIM4 PE=1
          SV=2
          Length = 70

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 5  FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQA 64
          F   +++R+L+  PG++ FGIYRFLP FF +G  +E+ MIK  V  G+  FY  Y+R  +
Sbjct: 2  FTRAQVRRILQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIK--VRVGQETFYDVYRRKAS 59

Query: 65 VILAEERLS 73
              + RL 
Sbjct: 60 ERQYQRRLE 68


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.140    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,423,822
Number of Sequences: 539616
Number of extensions: 908410
Number of successful extensions: 2451
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2444
Number of HSP's gapped (non-prelim): 7
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)