Query psy11705
Match_columns 81
No_of_seqs 36 out of 38
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 16:49:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1svd_M Ribulose bisphosphate c 37.8 5.5 0.00019 26.6 -0.5 18 15-32 5-22 (110)
2 1rbl_M Ribulose 1,5 bisphospha 26.9 18 0.0006 24.1 0.6 18 15-32 3-20 (109)
3 1vry_A Glycine receptor alpha- 26.5 21 0.00073 22.3 0.9 24 22-45 34-57 (76)
4 2pr5_A Blue-light photorecepto 22.4 55 0.0019 18.3 2.1 23 55-77 108-130 (132)
5 3jtg_A ETS-related transcripti 21.2 14 0.00047 24.3 -0.8 17 13-31 73-89 (103)
6 3zxw_B Ribulose bisphosphate c 19.4 18 0.0006 24.5 -0.6 18 15-32 2-19 (118)
7 2wzo_A Transforming growth fac 18.8 46 0.0016 21.9 1.4 25 5-29 118-142 (146)
8 2lf8_A Transcription factor ET 24.0 24 0.00083 24.3 0.0 17 11-29 70-86 (128)
9 1bc8_C SAP-1, protein (SAP-1 E 18.3 9.5 0.00032 24.9 -2.1 18 12-31 70-87 (93)
10 2dao_A Transcription factor ET 17.7 15 0.00053 24.9 -1.2 16 13-30 76-91 (118)
No 1
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=37.85 E-value=5.5 Score=26.61 Aligned_cols=18 Identities=11% Similarity=0.451 Sum_probs=15.4
Q ss_pred HhcCCCcccchhhhhHHH
Q psy11705 15 KAWPGQKYFGIYRFLPLF 32 (81)
Q Consensus 15 ~~~PGK~rfG~YRflP~F 32 (81)
+.+||+++||-+-|||-+
T Consensus 5 ~~~~~~~~~etfSyLP~l 22 (110)
T 1svd_M 5 QDYKQSLKYETFSYLPPM 22 (110)
T ss_dssp CCCCCCCCCSTTTTSCCC
T ss_pred cccCCCccccccccCCCC
Confidence 456999999999999954
No 2
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=26.94 E-value=18 Score=24.08 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=15.3
Q ss_pred HhcCCCcccchhhhhHHH
Q psy11705 15 KAWPGQKYFGIYRFLPLF 32 (81)
Q Consensus 15 ~~~PGK~rfG~YRflP~F 32 (81)
+-+||.++||-+-|||-+
T Consensus 3 ~~~~~~~~~etfSyLP~l 20 (109)
T 1rbl_M 3 KTLPKERRFETFSYLPPL 20 (109)
T ss_dssp CCCCCCCCCSTTTTSSCC
T ss_pred ccCCCcccccccccCCCC
Confidence 358999999999999954
No 3
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=26.49 E-value=21 Score=22.25 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.1
Q ss_pred ccchhhhhHHHHhhhhhhhhhhee
Q psy11705 22 YFGIYRFLPLFFGVGAALEFAMIK 45 (81)
Q Consensus 22 rfG~YRflP~FF~lGaamE~~MIn 45 (81)
..++|-+..+.|+.+|-+|+..+|
T Consensus 34 AiDvw~~~C~~FVF~aLlEya~V~ 57 (76)
T 1vry_A 34 AIDIWLAVCLLFVFSALLEYAAVN 57 (76)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999976
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=22.35 E-value=55 Score=18.35 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=17.3
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhh
Q psy11705 55 FYKTYKRNQAVILAEERLSKLEQ 77 (81)
Q Consensus 55 FYdvyrRkqae~~~e~rl~~~~~ 77 (81)
+-|+=.||++|+++++..+++++
T Consensus 108 ~~DITe~k~~e~~l~~~~~~l~~ 130 (132)
T 2pr5_A 108 QNDITKQKEYEKLLEDSLTEITA 130 (132)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHh
Confidence 34788899999988776666654
No 5
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=21.17 E-value=14 Score=24.34 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.5
Q ss_pred HHHhcCCCcccchhhhhHH
Q psy11705 13 LLKAWPGQKYFGIYRFLPL 31 (81)
Q Consensus 13 ll~~~PGK~rfG~YRflP~ 31 (81)
++..+||++ -+|+|++-
T Consensus 73 ii~Kv~G~r--~vY~F~~~ 89 (103)
T 3jtg_A 73 ILERVDGRR--LVYKFGKN 89 (103)
T ss_dssp SBCCCTTCT--TEEEBCTT
T ss_pred cEEecCCce--EEEEeCCC
Confidence 566899995 68999864
No 6
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=19.42 E-value=18 Score=24.47 Aligned_cols=18 Identities=22% Similarity=0.689 Sum_probs=4.7
Q ss_pred HhcCCCcccchhhhhHHH
Q psy11705 15 KAWPGQKYFGIYRFLPLF 32 (81)
Q Consensus 15 ~~~PGK~rfG~YRflP~F 32 (81)
+-||++++|.-+-|||-.
T Consensus 2 ~~~p~~kkfeTfSyLP~L 19 (118)
T 3zxw_B 2 KTLPKERRYETFSYLPPL 19 (118)
T ss_dssp ------------CCSCCC
T ss_pred CcCCCCccccccccCCCC
Confidence 468999999999999954
No 7
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=18.83 E-value=46 Score=21.91 Aligned_cols=25 Identities=20% Similarity=0.471 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHhcCCCcccchhhhh
Q psy11705 5 FYSLRLKRLLKAWPGQKYFGIYRFL 29 (81)
Q Consensus 5 ~~s~~ikrll~~~PGK~rfG~YRfl 29 (81)
+.+..|.++|+.+||-+..--|+|.
T Consensus 118 l~~p~V~~lie~Lpg~~~C~~Y~~~ 142 (146)
T 2wzo_A 118 FSHPAIHNLIQSCPGARKCINYQWV 142 (146)
T ss_dssp TTSHHHHHHHTTSTTGGGCTTCCCC
T ss_pred CCCHHHHHHHHhCCCchhcccCCcE
Confidence 4678899999999999888778763
No 8
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=24.00 E-value=24 Score=24.34 Aligned_cols=17 Identities=29% Similarity=0.773 Sum_probs=14.6
Q ss_pred HHHHHhcCCCcccchhhhh
Q psy11705 11 KRLLKAWPGQKYFGIYRFL 29 (81)
Q Consensus 11 krll~~~PGK~rfG~YRfl 29 (81)
+.++.++||++ .+|+|+
T Consensus 70 k~Ii~Kv~Gqr--lvY~F~ 86 (128)
T 2lf8_A 70 LNIIRKEPGQR--LLFRFM 86 (128)
Confidence 45789999996 799998
No 9
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=18.27 E-value=9.5 Score=24.86 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=14.1
Q ss_pred HHHHhcCCCcccchhhhhHH
Q psy11705 12 RLLKAWPGQKYFGIYRFLPL 31 (81)
Q Consensus 12 rll~~~PGK~rfG~YRflP~ 31 (81)
.++.+++|++ .+|+|++.
T Consensus 70 ~il~Kv~g~r--~vY~F~~~ 87 (93)
T 1bc8_C 70 NIIKKVNGQK--FVYKFVSY 87 (93)
T ss_dssp TSEEECTTST--TEEEETTT
T ss_pred CcEEecCCCe--EEEEeCCC
Confidence 4567899996 79999853
No 10
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.69 E-value=15 Score=24.92 Aligned_cols=16 Identities=31% Similarity=0.846 Sum_probs=13.2
Q ss_pred HHHhcCCCcccchhhhhH
Q psy11705 13 LLKAWPGQKYFGIYRFLP 30 (81)
Q Consensus 13 ll~~~PGK~rfG~YRflP 30 (81)
++.++||++ -+|+|++
T Consensus 76 ii~Kv~G~r--~vY~F~~ 91 (118)
T 2dao_A 76 IIRKEPGQR--LLFRFMK 91 (118)
T ss_dssp SEECCSSSS--SEEEECS
T ss_pred CEEeccCCe--EEEEecC
Confidence 677899996 7999984
Done!