Query psy11705
Match_columns 81
No_of_seqs 36 out of 38
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 16:49:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11705.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11705hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pw6a1 c.56.6.1 (A:14-271) Un 55.3 1.7 0.00012 30.1 0.9 14 27-40 221-234 (258)
2 d2axtf1 f.23.38.1 (F:11-45) Cy 25.4 14 0.001 19.4 1.3 14 29-42 18-33 (35)
3 d1yf3a1 c.66.1.28 (A:1-259) DN 23.5 10 0.00073 23.8 0.5 55 6-66 11-69 (259)
4 d1oi7a1 c.2.1.8 (A:1-121) Succ 18.1 16 0.0012 23.2 0.6 16 27-42 70-85 (121)
5 d1euca1 c.2.1.8 (A:1-130) Succ 14.0 23 0.0017 22.7 0.6 16 27-42 78-93 (130)
6 d1eera_ a.26.1.2 (A:) Erythrop 13.6 46 0.0034 22.2 2.1 29 43-72 36-64 (166)
7 d1yo5c1 a.4.5.21 (C:247-334) S 13.5 12 0.00085 22.7 -1.0 15 14-30 72-87 (88)
8 d2nu7a1 c.2.1.8 (A:2-120) Succ 12.6 23 0.0017 22.3 0.2 16 27-42 69-84 (119)
9 d1jfia_ a.22.1.3 (A:) Negative 12.1 1.1E+02 0.008 16.0 3.1 37 5-45 3-39 (66)
10 d1v7mv_ a.26.1.2 (V:) Thrombop 11.6 52 0.0038 21.5 1.8 30 42-72 29-58 (145)
No 1
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}
Probab=55.29 E-value=1.7 Score=30.07 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=11.9
Q ss_pred hhhHHHHhhhhhhh
Q psy11705 27 RFLPLFFGVGAALE 40 (81)
Q Consensus 27 RflP~FF~lGaamE 40 (81)
-|+|+|+++||+=+
T Consensus 221 H~~Pl~~alGa~~~ 234 (258)
T d2pw6a1 221 HYLPLLYVLGAWDG 234 (258)
T ss_dssp TTHHHHHHHHTCCS
T ss_pred HHHHHHHHhhCCCC
Confidence 48999999999844
No 2
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.37 E-value=14 Score=19.42 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=10.0
Q ss_pred hHHHHhhhh--hhhhh
Q psy11705 29 LPLFFGVGA--ALEFA 42 (81)
Q Consensus 29 lP~FF~lGa--amE~~ 42 (81)
+|-.|-||| ||+|+
T Consensus 18 vptvfFlGai~aMqfi 33 (35)
T d2axtf1 18 VPTIFFLGAIAAMQFI 33 (35)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred cchhhhHhHHHHHHHh
Confidence 588888886 56553
No 3
>d1yf3a1 c.66.1.28 (A:1-259) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}
Probab=23.49 E-value=10 Score=23.81 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcCCCcccchhhhhHHHHhhhhhhhhhhee-ee---eecCcchhhhHHhhHHHHH
Q psy11705 6 YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIK-WE---VNNGEINFYKTYKRNQAVI 66 (81)
Q Consensus 6 ~s~~ikrll~~~PGK~rfG~YRflP~FF~lGaamE~~MIn-~~---v~~G~~nFYdvyrRkqae~ 66 (81)
+++.++.++.++| + .+. ++=.|++ ||++.+-+-+ .- ++..=.|||++-++...+.
T Consensus 11 K~~l~~~i~~~~p-~--~~~--yvEPF~G-ggav~~~~~~~~v~ND~n~~lin~~~~v~~~~~~~ 69 (259)
T d1yf3a1 11 KQSLLPELKSHFP-K--YNR--FVDLFCG-GLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDD 69 (259)
T ss_dssp CTTTHHHHHHTCC-C--CSE--EEETTCT-TCTTGGGSCSSEEEECSCHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhCC-C--CCe--EEeeccc-HHHHHhccCCCEEEecCCHHHHHHHHHHHhCCHHH
Confidence 4567788888888 3 343 4444444 5555555411 10 1111269999887655443
No 4
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}
Probab=18.15 E-value=16 Score=23.20 Aligned_cols=16 Identities=44% Similarity=0.416 Sum_probs=14.2
Q ss_pred hhhHHHHhhhhhhhhh
Q psy11705 27 RFLPLFFGVGAALEFA 42 (81)
Q Consensus 27 RflP~FF~lGaamE~~ 42 (81)
=|+|..|+..|+||-+
T Consensus 70 IfVPp~~a~dAi~EAi 85 (121)
T d1oi7a1 70 IFVPAPAAADAALEAA 85 (121)
T ss_dssp ECCCHHHHHHHHHHHH
T ss_pred EeeCHHHHHHHHHHHH
Confidence 3899999999999975
No 5
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=14.00 E-value=23 Score=22.65 Aligned_cols=16 Identities=25% Similarity=0.276 Sum_probs=14.1
Q ss_pred hhhHHHHhhhhhhhhh
Q psy11705 27 RFLPLFFGVGAALEFA 42 (81)
Q Consensus 27 RflP~FF~lGaamE~~ 42 (81)
=|+|..|+..|+||-+
T Consensus 78 IfVPp~~a~dAi~EAi 93 (130)
T d1euca1 78 IYVPPPFAAAAINEAI 93 (130)
T ss_dssp ECCCHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHH
Confidence 3899999999999975
No 6
>d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.59 E-value=46 Score=22.24 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=21.0
Q ss_pred heeeeeecCcchhhhHHhhHHHHHHHHHHh
Q psy11705 43 MIKWEVNNGEINFYKTYKRNQAVILAEERL 72 (81)
Q Consensus 43 MIn~~v~~G~~nFYdvyrRkqae~~~e~rl 72 (81)
+.|+.|-.=++||| +||++..+.+.++=+
T Consensus 36 s~~v~vP~t~v~f~-~Wk~~~~~~kA~EV~ 64 (166)
T d1eera_ 36 NEKITVPDTKVNFY-AWKRMEVGQQAVEVW 64 (166)
T ss_dssp EEEEEECCCCBCHH-HHTTSCHHHHHHHHH
T ss_pred CCceecccceecHH-HHHhhhHHHHHHHHH
Confidence 46777766778886 688888887766543
No 7
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.54 E-value=12 Score=22.68 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=11.1
Q ss_pred HHhcC-CCcccchhhhhH
Q psy11705 14 LKAWP-GQKYFGIYRFLP 30 (81)
Q Consensus 14 l~~~P-GK~rfG~YRflP 30 (81)
|..++ |++ =+|+|+|
T Consensus 72 l~Kv~~g~r--l~Y~Fv~ 87 (88)
T d1yo5c1 72 IRKPDISQR--LVYQFVH 87 (88)
T ss_dssp EECCSSCCT--TEEEESC
T ss_pred eeeccCCcE--eEEeCCC
Confidence 66786 774 5899986
No 8
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}
Probab=12.61 E-value=23 Score=22.33 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.1
Q ss_pred hhhHHHHhhhhhhhhh
Q psy11705 27 RFLPLFFGVGAALEFA 42 (81)
Q Consensus 27 RflP~FF~lGaamE~~ 42 (81)
=|+|..|+..|+||-+
T Consensus 69 IfVPp~~a~dA~~EAi 84 (119)
T d2nu7a1 69 IYVPAPFCKDSILEAI 84 (119)
T ss_dssp ECCCGGGHHHHHHHHH
T ss_pred EeccHHHHHHHHHHHH
Confidence 4899999999999975
No 9
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.06 E-value=1.1e+02 Score=16.03 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHhcCCCcccchhhhhHHHHhhhhhhhhhhee
Q psy11705 5 FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIK 45 (81)
Q Consensus 5 ~~s~~ikrll~~~PGK~rfG~YRflP~FF~lGaamE~~MIn 45 (81)
|.-.+|+++++.-|.-.+.+- ..-++++.+.|.|.-.
T Consensus 3 fP~srVkkimk~~~~~~~is~----~A~~~~~~a~E~Fi~~ 39 (66)
T d1jfia_ 3 FPPARIKKIMQTDEEIGKVAA----AVPVIISRALELFLES 39 (66)
T ss_dssp CCHHHHHHHHTTSTTCCCBCT----THHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCCccccccH----HHHHHHHHHHHHHHHH
Confidence 445789999998777654442 5678889999998764
No 10
>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.63 E-value=52 Score=21.46 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=20.5
Q ss_pred hheeeeeecCcchhhhHHhhHHHHHHHHHHh
Q psy11705 42 AMIKWEVNNGEINFYKTYKRNQAVILAEERL 72 (81)
Q Consensus 42 ~MIn~~v~~G~~nFYdvyrRkqae~~~e~rl 72 (81)
++.|+.+-.=++||| +||+|..+++.++=+
T Consensus 29 L~~~v~vP~t~v~f~-~Wk~~~~~~ka~EV~ 58 (145)
T d1v7mv_ 29 LPTPVLLPAVDFSLG-EWKTQMEETKAQDIL 58 (145)
T ss_dssp CSSCEEEECCCCCCH-HHHHSCHHHHHHHHH
T ss_pred CCCceeeCcceeeHH-HHHhccHHHHHHHHH
Confidence 346777755677776 688888877766543
Done!