RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11705
         (81 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.25
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 24  GIYRFLPLFFGVGAALEFAMIKWEVNNGEI-NFYKTYKRN-QAVI-LAEERLSKLEQTST 80
           G  + + +F G G   ++    +E    E+ + Y+TY      +I  + E LS+L +T+ 
Sbjct: 152 GNAQLVAIFGGQGNTDDY----FE----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203



 Score = 26.6 bits (58), Expect = 1.1
 Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 23/77 (29%)

Query: 6   YSLRLK-RLLKAWPG--Q--------KYFGIYRFLPLF--F----------GVGAALEFA 42
           Y L L  R  KA  G  Q        K     RFLP+   F           +   L   
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446

Query: 43  MIKWEVNNGEINFYKTY 59
            + +   + +I  Y T+
Sbjct: 447 NVSFNAKDIQIPVYDTF 463


>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency
           decline, ATP-binding, DNA DAMA repair, DNA-binding,
           helicase, hydrolase; 1.95A {Escherichia coli} PDB:
           2b2n_A* 4dfc_A
          Length = 483

 Score = 25.1 bits (55), Expect = 3.3
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 19  GQKYFGIYRFLPLFF 33
           G    GI  + PLFF
Sbjct: 251 GTLPAGIEYWQPLFF 265


>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
           and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
           coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
          Length = 883

 Score = 24.3 bits (53), Expect = 5.9
 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 27  RF-LPLFFGVGAALEFAMIK 45
           R  LP + G G AL+  +  
Sbjct: 725 RLMLPAWLGAGTALQKVVED 744


>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
           hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
           b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
           d.315.1.1
          Length = 1151

 Score = 24.2 bits (53), Expect = 6.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 19  GQKYFGIYRFLPLFF 33
           G    GI  + PLFF
Sbjct: 254 GTLPAGIEYWQPLFF 268


>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
           barrel domain, hydrolase, calcium binding, phospholipid
           binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
          Length = 816

 Score = 24.1 bits (51), Expect = 8.2
 Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 9/39 (23%)

Query: 6   YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMI 44
             + L  +    PG      YR +PL       L  A +
Sbjct: 734 RVMPLDGI---KPG------YRHVPLRNESNRPLGLASV 763


>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane
           proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC
           UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1*
           2o01_1* 3lw5_1*
          Length = 241

 Score = 23.9 bits (50), Expect = 8.2
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 11  KRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNG 51
           +R ++  P +K +    F PL +         +   E+ NG
Sbjct: 155 QRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNG 195


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,272,858
Number of extensions: 64053
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 10
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)