RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11705
         (81 letters)



>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
          subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
          Length = 160

 Score = 24.7 bits (53), Expect = 1.2
 Identities = 8/45 (17%), Positives = 15/45 (33%)

Query: 34 GVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEERLSKLEQT 78
          G+G    + + K     G          ++ V + E   S L+  
Sbjct: 17 GIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNV 61


>d1kcgc_ d.19.1.1 (C:) Class I MHC-related molecule Ulbp3 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 178

 Score = 23.8 bits (51), Expect = 3.1
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 16  AWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTY 59
           ++ G+K+         +  V A       KWE ++G   F+K  
Sbjct: 114 SFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMV 157


>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 936

 Score = 23.5 bits (50), Expect = 4.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 29  LPLFFGVGAALEFAMIK 45
           LP++ GVGAA +FA+ K
Sbjct: 754 LPVWLGVGAAFKFAIDK 770


>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD
           {Escherichia coli [TaxId: 562]}
          Length = 258

 Score = 23.1 bits (49), Expect = 5.6
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 28  FLPLFFGVGAA 38
           +LPL + +GA 
Sbjct: 222 YLPLLYVLGAW 232


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 311,249
Number of extensions: 12782
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 6
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)