BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11707
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28075|PSB5_RAT Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1
SV=3
Length = 263
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/148 (69%), Positives = 124/148 (83%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN YLLGT+AGGAADC +W+R+LA+QCR+YELRN ERISVAAASKL+ NM
Sbjct: 86 ASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANM 145
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y YKG GLSMG MI GWDKRGP LYYVDS+G RI G FSVGSGSV+AFGV+D GY ++
Sbjct: 146 VYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYD 205
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
L EEA+ LAR++IY ATYRD SGG +
Sbjct: 206 LQVEEAYDLARRAIYQATYRDAYSGGAV 233
>sp|O55234|PSB5_MOUSE Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3
Length = 264
Score = 220 bits (560), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 102/148 (68%), Positives = 124/148 (83%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN YLLGT+AGGAADC +W+R+LA+QCR+YELRN ERISVAAASKL+ NM
Sbjct: 86 ASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANM 145
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y YKG GLSMG MI GWDKRGP LYYVDS+G RI G FSVGSGSV+A+GV+D GY ++
Sbjct: 146 VYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYD 205
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
L EEA+ LAR++IY ATYRD SGG +
Sbjct: 206 LKVEEAYDLARRAIYQATYRDAYSGGAV 233
>sp|Q32KL2|PSB5_BOVIN Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1
Length = 263
Score = 219 bits (557), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 102/148 (68%), Positives = 124/148 (83%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN YLLGT+AGGAADC +W+R+LA+QCR+YELRN ERISVAAASKL+ NM
Sbjct: 86 ASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANM 145
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y YKG GLSMG MI GWDKRGP LYYVDS+G RI G FSVGSGSV+A+GV+D GY ++
Sbjct: 146 VYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD 205
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
L EEA+ LAR++IY ATYRD SGG +
Sbjct: 206 LEVEEAYDLARRAIYQATYRDAYSGGSV 233
>sp|Q5R8S2|PSB5_PONAB Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3
Length = 263
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 124/148 (83%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN YLLGT+AGGAADC +W+R+LA+QCR+YELRN ERISVAAASKL+ NM
Sbjct: 86 ASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANM 145
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y YKG GLSMG MI GWDKRGP LYYVDS+G RI G FSVGSGSV+A+GV+D GY ++
Sbjct: 146 VYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD 205
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
L E+A+ LAR++IY ATYRD SGG +
Sbjct: 206 LEVEQAYDLARRAIYQATYRDAYSGGAV 233
>sp|P28074|PSB5_HUMAN Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3
Length = 263
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 124/148 (83%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN YLLGT+AGGAADC +W+R+LA+QCR+YELRN ERISVAAASKL+ NM
Sbjct: 86 ASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANM 145
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y YKG GLSMG MI GWDKRGP LYYVDS+G RI G FSVGSGSV+A+GV+D GY ++
Sbjct: 146 VYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD 205
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
L E+A+ LAR++IY ATYRD SGG +
Sbjct: 206 LEVEQAYDLARRAIYQATYRDAYSGGAV 233
>sp|Q54BC8|PSB5_DICDI Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5
PE=1 SV=1
Length = 272
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 95/148 (64%), Positives = 121/148 (81%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S S+KK++EI LLGT+AGGAADC +W+R L ++CRLYELRN E ISVAAASK++ N+
Sbjct: 89 ASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANI 148
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y+YKG GLSMG MI GWDK GPQLYYVD+DG R+ G FS GSGS +A+GVLDTG+ W+
Sbjct: 149 VYSYKGYGLSMGTMITGWDKTGPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDTGFKWD 208
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
+ DEEA++L R+++YHAT+RD SGG I
Sbjct: 209 MNDEEAYELGRRAVYHATHRDAYSGGAI 236
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 121/148 (81%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
SS S+KKI+EIN Y+LGT+AGGAADC +W R L +CRL+EL N RISV ASKL+ N+
Sbjct: 82 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
YNY+G GLS+G MIAGWD+ GP LYYVDS+G R+KG FSVGSGS +A+GVLD GY ++
Sbjct: 142 LYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGYKYD 201
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
+T EEA +LAR++IYHATYRD ASGG++
Sbjct: 202 MTVEEASELARRAIYHATYRDGASGGVV 229
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2
PE=1 SV=1
Length = 273
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/160 (61%), Positives = 127/160 (79%), Gaps = 1/160 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
SS S+KKI+EIN Y+LGT+AGGAADC +W R L +CRL+EL N RISV+ ASKL+ NM
Sbjct: 84 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANM 143
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y+Y+G GLS+G MIAGWD+ GP LYYVD++G R+KG+ FSVGSGS +A+GVLD+GY ++
Sbjct: 144 LYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKFD 203
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ-WNQ 162
++ EEA +LAR+SIYHAT+RD ASGG+ G Q W +
Sbjct: 204 MSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTK 243
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 95/147 (64%), Positives = 123/147 (83%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
SS S+KKI+EIN Y+LGT+AGGAADC +W R L +CRL+EL N RISV+ ASKL+ NM
Sbjct: 84 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANM 143
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y+Y+G GLS+G MIAGWD+ GP LYYVD++G R+KG+ FSVGSGS +A+GVLD+GY ++
Sbjct: 144 LYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYD 203
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGL 150
++ EEA +LAR+SIYHAT+RD ASGG+
Sbjct: 204 MSVEEASELARRSIYHATFRDGASGGV 230
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1
SV=1
Length = 276
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 120/148 (81%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
SS + K++EIN LLGT++G AADC YW+R+LAK+CRLY LRNGERISV+AASKL+ NM
Sbjct: 99 SSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y Y+G LSMG MI GWDK+GP LYYVD +G R+ GN+FS GSGS +A+GV+D+GY +
Sbjct: 159 VYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPS 218
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
L+ EEA++L R++I +AT+RD SGG+I
Sbjct: 219 LSPEEAYELGRRAITYATHRDSYSGGII 246
>sp|P28062|PSB8_HUMAN Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3
Length = 276
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/144 (62%), Positives = 117/144 (81%)
Query: 8 MKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNY 67
+ K++EIN YLLGT++G AADC YW+R+LAK+CRLY LRNGERISV+AASKL+ NM Y
Sbjct: 103 VNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQY 162
Query: 68 KGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDE 127
+G GLSMG MI GWDK+GP LYYVD G R+ GN+FS GSG+ +A+GV+D+GY NL+ E
Sbjct: 163 RGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPE 222
Query: 128 EAHQLARKSIYHATYRDFASGGLI 151
EA+ L R++I +AT+RD SGG++
Sbjct: 223 EAYDLGRRAIAYATHRDSYSGGVV 246
>sp|P34065|PSB5_CHICK Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5
PE=2 SV=2
Length = 256
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 117/148 (79%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S +++K++EIN LLGT+AGGAADC +W+R+LA+QCR+YELRN E ISVAAASKL+ NM
Sbjct: 82 ASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANM 141
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y YKG GLSMG MI GWDKRGP LYYVDS+G RI G F+VGSGS +A+GVLD G +
Sbjct: 142 VYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAVGSGSSYAYGVLDGGRRPD 201
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
+ +EA +LAR++I+ A RD SGG +
Sbjct: 202 MATDEALELARRAIFQAARRDAYSGGSV 229
>sp|Q3T112|PSB8_BOVIN Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2
Length = 276
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/144 (62%), Positives = 118/144 (81%)
Query: 8 MKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNY 67
+ K++EIN YLLGT++G AADC+YW+R+LAK+CRLY LRNGERISV+AASKL+ NM Y
Sbjct: 103 VNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQY 162
Query: 68 KGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDE 127
+G GLSMG MI GWDK+GP LYYVD +G R+ GN+FS GSG+ A+GV+D+GY +L+ E
Sbjct: 163 RGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIE 222
Query: 128 EAHQLARKSIYHATYRDFASGGLI 151
EA+ L R++I HAT+RD SGG++
Sbjct: 223 EAYDLGRRAIVHATHRDSYSGGVV 246
>sp|P28063|PSB8_MOUSE Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2
Length = 276
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 119/148 (80%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
SS M K++EIN YLLGT++G AADC YW+R+LAK+CRLY LRNGERISV+AASKL+ NM
Sbjct: 99 SSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y+G GLSMG MI GWDK+GP LYYVD +G R+ G +FS GSG+ +A+GV+D+GY +
Sbjct: 159 MLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQD 218
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
L+ EEA+ L R++I +AT+RD SGG++
Sbjct: 219 LSPEEAYDLGRRAIAYATHRDNYSGGVV 246
>sp|P28064|PSB8_RAT Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1
SV=3
Length = 276
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 118/144 (81%)
Query: 8 MKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNY 67
+ K++EIN YLLGT++G AADC YW+R+LAK+CRLY LRNGERISV+AASKL+ NM Y
Sbjct: 103 VNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQY 162
Query: 68 KGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDE 127
+G GLSMG MI GWDK+GP LYYVD +G R+ G +FS GSG+ +A+GV+D+GY +L+ E
Sbjct: 163 RGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPE 222
Query: 128 EAHQLARKSIYHATYRDFASGGLI 151
EA+ LAR++I +AT+RD SGG++
Sbjct: 223 EAYDLARRAIVYATHRDSYSGGVV 246
>sp|P30655|PSB5_SCHPO Probable proteasome subunit beta type-5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pts1 PE=3 SV=3
Length = 272
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 120/148 (81%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN YLLGTLAGGAADC +W+ VL +CRL++LRN E ISV+AASK++ N+
Sbjct: 88 ASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNI 147
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y+YKG GLSMG M+AG K G LYY+DSDG R+KG++FSVGSGS FA+GVLD+GY W+
Sbjct: 148 TYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWD 207
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLI 151
L+ +EA LA++SI AT+RD SGG +
Sbjct: 208 LSKQEALYLAQRSIVAATHRDAYSGGSV 235
>sp|P30656|PSB5_YEAST Proteasome subunit beta type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE2 PE=1 SV=3
Length = 287
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN +LLGT+AGGAADC +W+ L QCRL+ELR ERISVAAASK++ N+
Sbjct: 102 ASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNL 161
Query: 64 AYNYKGTGLSMGMMIAGWD-KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y YKG GLSMG MI G+ K GP +YYVDSDG R+KG++F VGSG FA+GVLD+ Y W
Sbjct: 162 VYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 221
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLI 151
+L+ E+A L ++SI A +RD SGG +
Sbjct: 222 DLSVEDALYLGKRSILAAAHRDAYSGGSV 250
>sp|Q29576|PSB8_PIG Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8
PE=1 SV=1
Length = 104
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 84/104 (80%)
Query: 41 RLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKG 100
RLY LRNG RISV+AASKL NM Y Y+G GLSMG MI GWDK+GP LYYVD +G R+ G
Sbjct: 1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSG 60
Query: 101 NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRD 144
N+FS GSG+ +A+GV+D+G+ ++L+ EEA+ L R++I HAT+RD
Sbjct: 61 NMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 104
>sp|A5LHX3|PSB11_HUMAN Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1
Length = 300
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 104/142 (73%)
Query: 10 KIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG 69
K++ ++ +LLGT +G +ADC W RVL ++ RL ELR G+ SVA+A+KL+ M Y+G
Sbjct: 82 KVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRG 141
Query: 70 TGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEA 129
L + + GWD+ GP+L+YV SDG R++G++FSVGSGS +A+GVLD GY ++++ +EA
Sbjct: 142 LDLCVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEA 201
Query: 130 HQLARKSIYHATYRDFASGGLI 151
+ LAR ++ HAT+RD SGG +
Sbjct: 202 YALARCAVAHATHRDAYSGGSV 223
>sp|Q8BG41|PSB11_MOUSE Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1
Length = 302
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 100/143 (69%)
Query: 9 KKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK 68
+K++ ++ LLGT +G +ADC W RVL ++ RL ELR G+ SVA +KL+ M Y+
Sbjct: 81 RKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYR 140
Query: 69 GTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEE 128
G L + + GWD GP L+YV SDG ++G++FSVGSGS +A+GVLD GYH+++T +E
Sbjct: 141 GLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQE 200
Query: 129 AHQLARKSIYHATYRDFASGGLI 151
A+ LAR ++ HAT+RD SGG +
Sbjct: 201 AYTLARCAVAHATHRDAYSGGSV 223
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S KK+ I D + T+AGG D R++ +C LYE+R G++ISV AA+ ++ N
Sbjct: 38 ASKKAKKVHAITDKIGMTIAGGVGDAQQLVRIINVECNLYEIRRGQKISVGAAATILSNY 97
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSD-GQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
+ + + +++ G D GP +Y VD+ G ++ N S GSGS+ A+GVL+ +
Sbjct: 98 LNQNRFSPYYVQLLVGGVDTSGPSVYSVDAAGGATLEENFVSTGSGSLTAYGVLEDRFKP 157
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
N+T+EEA +LA +++ A RD ASG
Sbjct: 158 NMTEEEAIELAVRALRAAMLRDSASG 183
>sp|D3E0A3|PSB_METRM Proteasome subunit beta OS=Methanobrevibacter ruminantium (strain
ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=psmB PE=3
SV=1
Length = 207
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 9 KKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK 68
+KI +I++++ T+AG AD +V++ + LY LRNG+ IS+ AA+ + N+ ++
Sbjct: 41 EKIFKIDNHIAATIAGSVADAQTLMKVISAETSLYRLRNGKDISLEAAAAVSSNILHSSP 100
Query: 69 GTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEE 128
+ +I G D G +Y +D+ G IK S GSGS FA+GVL+ ++ ++T EE
Sbjct: 101 A---YVQTLIGGVDDTGASIYSLDAAGGMIKDTFISTGSGSTFAYGVLEDRFYEDITVEE 157
Query: 129 AHQLARKSIYHATYRD-FASGGLIRGNAS 156
A ++A ++I AT RD F+ G + N +
Sbjct: 158 ATEVAIRAIKAATERDTFSGNGFLVANVT 186
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S KK+ ++ D + T AGG D R+++ +C LY++R G ISV A+S L+ N
Sbjct: 36 ASKRAKKVYQVADRIGMTTAGGVGDAQQLARIMSVECNLYQIRRGRSISVGASSTLLSNY 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIK-GNVFSVGSGSVFAFGVLDTGYHW 122
+G + +++ G D GP +Y VD+ G + ++ + GSGS A+GVL+ Y
Sbjct: 96 LNQNRGYPYYVQLLVGGVDATGPSVYSVDAMGGATRESDIVATGSGSPMAYGVLEDRYKK 155
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
+LT++EA +LA +++ A RD ASG
Sbjct: 156 DLTEDEAIELAIRALRAAMRRDSASG 181
>sp|Q980L4|PSB1_SULSO Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +IN +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVYKINKFLMAG-AGIYGDLQTLTRIMNVEIKYYEVSTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ + A QL K+I + RD SG
Sbjct: 152 SLDVATQLITKAIKASIERDITSG 175
>sp|D0KRX1|PSB1_SULS9 Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain 98/2)
GN=psmB1 PE=3 SV=1
Length = 196
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +IN +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVYKINKFLMAG-AGIYGDLQTLTRIMNVEIKYYEVSTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ + A QL K+I + RD SG
Sbjct: 152 SLDVATQLITKAIKASIERDITSG 175
>sp|A5UM14|PSB_METS3 Proteasome subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmB PE=3 SV=1
Length = 204
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 9 KKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK 68
+KI +IND+++ T+AG D +++ + LY++RN ++ISV AA+ + N+ +
Sbjct: 40 EKIFKINDHIVTTIAGSVGDAQNLMKIIEAEVSLYQMRNNDKISVKAAASVTANI---LR 96
Query: 69 GTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEE 128
+ + ++ G D P LY +D G I+ S GSGS+ A+GVL+ YH +T +E
Sbjct: 97 SGPMYVQTLLGGMDGDKPSLYSLDPAGGMIEDTYISTGSGSIVAYGVLEDRYHEEITTDE 156
Query: 129 AHQLARKSIYHATYRDFASG 148
++A ++I A+ RD SG
Sbjct: 157 GLEIAVRAIKAASERDTFSG 176
>sp|A3CUS9|PSB_METMJ Proteasome subunit beta OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmB PE=3 SV=1
Length = 214
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S KKI +I + T AGG D R+L +C L+E+R G+ +SV AAS L+ N
Sbjct: 38 ASKRAKKIYQITPRIGLTTAGGVGDAQQLVRILQVECNLFEMRRGKTMSVGAASTLLSNY 97
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIK-GNVFSVGSGSVFAFGVLDTGYHW 122
+ + +++ G+D GP +Y VD+ G K ++ + GSGS FA+GVL+ Y
Sbjct: 98 LNQNRYYPYYVQLLMGGFDDEGPSVYSVDAMGGATKEEDIVATGSGSPFAYGVLEDQYRA 157
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
+ +++A LA +++ A RD ASG
Sbjct: 158 GMKEDDAKDLAVRAVRSAMRRDSASG 183
>sp|C3N7K2|PSB2_SULIY Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +I +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVHKIGKFLMAG-AGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ A QL K+I + RD SG
Sbjct: 152 NLDIAAQLITKAIKASIERDITSG 175
>sp|C3MY41|PSB2_SULIM Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +I +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVHKIGKFLMAG-AGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ A QL K+I + RD SG
Sbjct: 152 NLDIAAQLITKAIKASIERDITSG 175
>sp|C3MRE5|PSB2_SULIL Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +I +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVHKIGKFLMAG-AGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ A QL K+I + RD SG
Sbjct: 152 NLDIAAQLITKAIKASIERDITSG 175
>sp|C4KIR0|PSB2_SULIK Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +I +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVHKIGKFLMAG-AGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ A QL K+I + RD SG
Sbjct: 152 NLDIAAQLITKAIKASIERDITSG 175
>sp|D2PDG6|PSB2_SULID Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.D.8.5
/ Lassen #2) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +I +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVHKIGKFLMAG-AGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ A QL K+I + RD SG
Sbjct: 152 NLDIAAQLITKAIKASIERDITSG 175
>sp|C3MZI0|PSB2_SULIA Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.27)
GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +I +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVHKIGKFLMAG-AGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ A QL K+I + RD SG
Sbjct: 152 NLDIAAQLITKAIKASIERDITSG 175
>sp|C3NFX2|PSB1_SULIN Proteasome subunit beta 1 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S KK+ +I +L+ AG D R++ + + YE+ G+ ISV AA+KL+ +
Sbjct: 33 SKQAKKVHKIGKFLMAG-AGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVIL 91
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
Y YK ++ G D++GPQLY +D G I+ N +VGSG+ A GVL++ Y N+
Sbjct: 92 YQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNM 151
Query: 125 TDEEAHQLARKSIYHATYRDFASG 148
+ A QL K+I + RD SG
Sbjct: 152 NLDIAAQLITKAIKASIERDITSG 175
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 9 KKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK 68
KKI I D + T AG D + R+++ + +LYE+R E+ +V A + L+ N+ + +
Sbjct: 44 KKIYRIADRVAMTTAGAVGDAQFLARLISVEIKLYEIRKEEKPTVKAIATLLSNILNSVR 103
Query: 69 GTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKG-NVFSVGSGSVFAFGVLDTGYHWNLTDE 127
+ +++ G DKRGP +Y +D G I+ ++ + GSGS A+GVL+ Y +T +
Sbjct: 104 WFPYFVQLLVGGVDKRGPSIYSIDLLGGAIEEIDIVATGSGSPTAYGVLEDRYTPEITVD 163
Query: 128 EAHQLARKSIYHATYRDFASG 148
+ +LA ++IY A RD ASG
Sbjct: 164 DGVELAVRAIYSAMRRDSASG 184
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S KK+ +I D + T+AGG D R++ +C LY++R I+V AAS L+ N
Sbjct: 38 ASKRAKKVYQIADRIGMTIAGGVGDAQQLARIITVECNLYQIRRSREITVGAASTLLSNY 97
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIK-GNVFSVGSGSVFAFGVLDTGYHW 122
+ + +++ G D GP +Y VD+ G K ++ S GSGS A+GVL+ Y
Sbjct: 98 LNQNRYFPYYVQLLVGGIDDHGPSVYSVDAMGGATKEEDIVSTGSGSPMAYGVLEDRYRP 157
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
+ ++EA +LA +++ A RD SG
Sbjct: 158 GMNEDEAVELAVRALRSAMKRDAGSG 183
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S + KK+ +I+D + T AG D R+++ + +LY++R E +++ + LM N
Sbjct: 36 ASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNF 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHW 122
+ + + ++I G DK GP +Y +D+ G I+ + + GSGS A+GVL+ Y
Sbjct: 96 LSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRE 155
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
N+T +E LA ++I++AT RD ASG
Sbjct: 156 NMTVKEGLDLAIRAIHNATKRDSASG 181
>sp|Q2FQL8|PSB_METHJ Proteasome subunit beta OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=psmB PE=3 SV=1
Length = 209
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S+ + KKI +I + T AGG D R++ + LYE+R G+RISV AAS L+ N+
Sbjct: 37 SNKTAKKIYQIAPRIGLTTAGGVGDAQQLARLMTVEANLYEIRRGKRISVQAASTLLSNI 96
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHW 122
+ + + ++I G D+ GP L+ VD+ G K + + + GSGS A+GVL+ Y
Sbjct: 97 LHGNRMFPFYVQLLIGGVDETGPVLFSVDAVGGTGKEDGIVATGSGSPMAYGVLEDRYTL 156
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
+ + A +LA +++ A RD SG
Sbjct: 157 GMDERSAIELAIRALRSAIKRDAGSG 182
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 1/165 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S +KKIV +++Y+ T++G AD VL ++ RLYE+ N + SV + L+ N+
Sbjct: 52 ASRRVKKIVMLSNYVAMTVSGLVADAQILSDVLREEIRLYEMTNKVKPSVRFVASLLSNI 111
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
++ K + +++ G+D + P+LY +D G + + GSGS A+GVL+ Y +
Sbjct: 112 LFSSKFFPYIVQLIVGGYDTQ-PRLYTLDLFGSITEDKYTATGSGSPIAYGVLEERYRED 170
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGH 168
L+ EEA ++A +I A RD ASG G Q + +F+ +
Sbjct: 171 LSVEEAIKVATTAIRSAVLRDAASGDGADVVVIGPQGYEEKFIPY 215
>sp|D5EAS6|PSB_METMS Proteasome subunit beta OS=Methanohalophilus mahii (strain ATCC
35705 / DSM 5219 / SLP) GN=psmB PE=3 SV=1
Length = 210
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S + KKI +I+D + T AG D R+++ + +LY++R E I++ + L+ N+
Sbjct: 36 ASKTAKKIYQIDDLVGMTTAGSVGDAQQLVRMISVESKLYKMRRQESITIKGLTTLLSNI 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRI-KGNVFSVGSGSVFAFGVLDTGYHW 122
+ L + +++ G DK GP ++ +D+ G I + + GSGS A+GVL+ YH
Sbjct: 96 LGGQRYFPLMVQLLVGGVDKNGPAIFSLDAMGGNIEETKAVATGSGSPMAYGVLEDRYHE 155
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
+ +E +LA +++Y+A RD ASG
Sbjct: 156 GINVDEGMELAVRALYNAMKRDSASG 181
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S + KK+ +I+D + T AG D R++ + +LY++R E +++ + LM N
Sbjct: 36 ASKTAKKVYQIDDLVAMTTAGSVGDAQQLVRLVNVESQLYKMRRNESMTIKGIATLMSNF 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHW 122
+ + + + ++I G DK GP +Y +D+ G I+ + + GSGS A+GVL+ Y
Sbjct: 96 LNSNRYYPMMVQLLIGGVDKNGPGIYSLDALGGSIEETRISATGSGSPMAYGVLEDQYRE 155
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
++T +E LA ++I++AT RD ASG
Sbjct: 156 DMTVKEGLDLAIRAIHNATKRDSASG 181
>sp|Q12YV7|PSB_METBU Proteasome subunit beta OS=Methanococcoides burtonii (strain DSM
6242) GN=psmB PE=3 SV=1
Length = 210
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S + KKI +I+D + T AG D R+++ + +L+++R E I++ + L+ NM
Sbjct: 36 ASKTAKKIYQIDDLVGMTTAGSVGDAQQIVRIISVESKLFKMRRQESITIKGITTLLSNM 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHW 122
+ L + ++I G DK GP +Y +D+ G I+ S GSGS A+GVL+ Y
Sbjct: 96 LSGQRYYPLMVQLLIGGVDKNGPAIYSLDALGGNIEETRAVSTGSGSPMAYGVLEDRYTE 155
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
++T E LA +++++A RD ASG
Sbjct: 156 DMTVVEGVDLAIRALHNAMKRDSASG 181
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S KKI +I D + T AG D + R++ + LY +R E +V A + L+ N+
Sbjct: 36 ASRRAKKIYKITDRIAMTTAGSVGDAQFLARLIKVETNLYTIRKEEEPTVKAVATLVSNL 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKG-NVFSVGSGSVFAFGVLDTGYHW 122
+ + + ++I G DK G ++Y +D G I+ ++ + GSGS A+GVL+ Y
Sbjct: 96 LNSVRYFPYLVQLLIGGVDKTGAKIYSIDPIGGAIEEIDIVATGSGSPMAYGVLEDNYRK 155
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
++ +EA +LA ++IY A RD ASG
Sbjct: 156 DINVDEAVELAIRAIYSAMKRDSASG 181
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 9 KKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK 68
+KI ++ D + T+AG D R+L + +L+ELR +S+ A S L+ N+ + Y+
Sbjct: 40 QKIYQLTDNIAMTIAGSVGDGQRLARMLQAESKLFELRRHGPMSINALSMLLSNLLWEYR 99
Query: 69 GTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVF-SVGSGSVFAFGVLDTGYHWNLTDE 127
+ +++ G DK GP+L+ +D G RI F S GSGS A+GVL+ Y +++ E
Sbjct: 100 --IFYIQVLVGGVDKSGPKLFSLDPAGGRITEVKFSSTGSGSPLAYGVLEDRYKQDMSVE 157
Query: 128 EAHQLARKSIYHATYRDFASG 148
+ +LA K++ A RD ASG
Sbjct: 158 QGVELAAKALESAMKRDSASG 178
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S +KI I D T+AG D R+L + +L+ELR +S+ A S L+ N+
Sbjct: 36 ASRDAQKIYRITDNAAMTIAGSVGDGQRLARILQVEAKLFELRRHGSMSINALSMLLSNI 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVF-SVGSGSVFAFGVLDTGYHW 122
+ + ++I G DK GP++Y +D G RI+ F S GSGS A+GVL+ Y
Sbjct: 96 LAEMRYAPYYVQVLIGGLDKAGPKIYSLDPLGGRIEEEKFVSTGSGSPIAYGVLEDRYKP 155
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
++ EE +LA +++ A RD ASG
Sbjct: 156 GMSVEEGVELAARALESAMKRDSASG 181
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 8 MKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNY 67
++KIV+I+DY+ T AG AD VL + + YEL + +R+SV AA+ + N+ ++
Sbjct: 44 VEKIVKISDYMAMTTAGLVADAQVLADVLRMEVKNYELFHKKRMSVKAAATFLSNVLHSA 103
Query: 68 KGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDE 127
+ + +++ G+D P+LY +D G + GSGS A GV++ Y+ N+ E
Sbjct: 104 RFYPYIVQLLVGGFDT-APRLYSLDWFGTVAEEEFLVTGSGSPMAVGVIEAEYNPNMDLE 162
Query: 128 EAHQLARKSIYHATYRDFASG 148
E LA ++++ AT RD ASG
Sbjct: 163 ELVNLAVRAVFAATRRDTASG 183
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S + KKI +I D + T AG D + R++ + LYE+R + +V A + L N+
Sbjct: 38 ASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNL 97
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRI-KGNVFSVGSGSVFAFGVLDTGYHW 122
+Y+ + ++I G D G +Y +D G I + ++ + GSGS+ A+GVL+ +
Sbjct: 98 LNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTP 157
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
+ +EA +LA ++IY A RD ASG
Sbjct: 158 EIGVDEAVELAVRAIYSAMKRDSASG 183
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 9 KKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK 68
KK+ +I+DY+ T+AG D R L + RLY++R G+ IS A + L+ N+ ++ +
Sbjct: 38 KKLYKIDDYIAMTIAGSVGDAQAIVRALIAEARLYKMRTGKNISPRACATLLSNILHSSR 97
Query: 69 GTGLSMGMMIAGWD-KRGPQLYYVDSDGQRIKGNVF-SVGSGSVFAFGVLDTGYHWNLTD 126
++I G+D GP+L+ +D G + F S GSGS A+GVL+ Y +++
Sbjct: 98 MFPFLTQIIIGGYDLTDGPKLFSLDPLGGMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSI 157
Query: 127 EEAHQLARKSIYHATYRDFASG 148
EE +LA K++ A RD SG
Sbjct: 158 EEGLKLALKALKSAMERDTYSG 179
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S + KK+ +I+D + T AG D R+++ + +LY++R E +++ + LM N
Sbjct: 36 ASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRNESMTIKGIATLMSNF 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHW 122
+ + + ++I G DK GP +Y +D G I+ + + GSGS A+GVL+ Y
Sbjct: 96 LNANRYYPMMVQLLIGGVDKNGPAIYSLDPMGGSIEETRISATGSGSPMAYGVLEDQYRE 155
Query: 123 NLTDEEAHQLARKSIYHATYRDFASG 148
++ +E LA ++I++AT RD ASG
Sbjct: 156 DIAVKEGLDLAIRAIHNATKRDSASG 181
>sp|Q2NI68|PSB_METST Proteasome subunit beta OS=Methanosphaera stadtmanae (strain DSM
3091) GN=psmB PE=3 SV=1
Length = 205
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 10 KIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG 69
K+ +I+D + T+AG + +L + LY+LRN + +S+ A + L N+ K
Sbjct: 42 KLFQIDDKIGATIAGTVSHAQSLMDILKAEISLYKLRNEKDMSIDALAVLTSNI---LKS 98
Query: 70 TGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEA 129
+ ++AG DK G +LY +D G I S GSGS +AFGVL+ Y+ ++T EE
Sbjct: 99 RPYYVQTILAGVDKDGAKLYTLDPSGSYIPDTFTSTGSGSPYAFGVLEDRYNEDITTEEG 158
Query: 130 HQLARKSIYHATYRDFASG 148
++A K+I A RD SG
Sbjct: 159 KKIAIKAITSAMERDVYSG 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,612,386
Number of Sequences: 539616
Number of extensions: 2793866
Number of successful extensions: 6170
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 5712
Number of HSP's gapped (non-prelim): 374
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)