Query psy11707
Match_columns 177
No_of_seqs 118 out of 1047
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 16:51:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03761 proteasome_beta_type_5 100.0 2.6E-43 5.5E-48 267.3 21.6 161 3-163 26-186 (188)
2 COG0638 PRE1 20S proteasome, a 100.0 4.9E-42 1.1E-46 268.3 19.8 168 3-171 56-225 (236)
3 cd03759 proteasome_beta_type_3 100.0 9.8E-42 2.1E-46 260.0 20.9 163 4-166 30-194 (195)
4 cd03758 proteasome_beta_type_2 100.0 1E-41 2.2E-46 259.6 20.0 161 3-163 27-190 (193)
5 TIGR03634 arc_protsome_B prote 100.0 9.5E-41 2.1E-45 252.5 21.2 159 3-161 27-185 (185)
6 cd03757 proteasome_beta_type_1 100.0 1E-40 2.3E-45 257.4 20.3 165 3-167 34-208 (212)
7 cd03764 proteasome_beta_archea 100.0 3.2E-40 6.9E-45 250.3 21.9 160 3-162 26-185 (188)
8 cd03762 proteasome_beta_type_6 100.0 4.8E-40 1E-44 249.3 21.3 161 4-165 27-188 (188)
9 cd03763 proteasome_beta_type_7 100.0 7.3E-40 1.6E-44 248.6 21.4 160 3-163 26-185 (189)
10 cd03760 proteasome_beta_type_4 100.0 7.6E-40 1.6E-44 250.0 20.7 161 3-163 28-194 (197)
11 PTZ00488 Proteasome subunit be 100.0 6.5E-40 1.4E-44 257.7 20.1 167 3-171 65-231 (247)
12 cd01912 proteasome_beta protea 100.0 3.3E-39 7.1E-44 244.7 21.1 160 4-163 27-187 (189)
13 cd03750 proteasome_alpha_type_ 100.0 1.8E-39 3.9E-44 252.9 20.1 166 3-170 52-221 (227)
14 cd03765 proteasome_beta_bacter 100.0 3.4E-39 7.3E-44 251.4 21.3 157 6-163 28-204 (236)
15 TIGR03633 arc_protsome_A prote 100.0 5.1E-39 1.1E-43 249.9 22.2 167 3-170 54-224 (224)
16 PRK03996 proteasome subunit al 100.0 4.4E-39 9.6E-44 252.7 20.1 168 4-172 62-233 (241)
17 PTZ00246 proteasome subunit al 100.0 1.3E-38 2.9E-43 251.6 20.5 169 3-171 57-234 (253)
18 cd03752 proteasome_alpha_type_ 100.0 4.8E-38 1E-42 242.7 20.9 154 3-156 55-213 (213)
19 TIGR03690 20S_bact_beta protea 100.0 2.4E-38 5.2E-43 245.3 19.2 168 3-172 28-208 (219)
20 cd03749 proteasome_alpha_type_ 100.0 5E-38 1.1E-42 242.3 20.7 153 5-157 52-211 (211)
21 cd03751 proteasome_alpha_type_ 100.0 4.6E-38 9.9E-43 242.6 20.5 154 3-156 55-212 (212)
22 KOG0176|consensus 100.0 4.8E-39 1E-43 236.7 13.9 166 4-171 60-234 (241)
23 cd03755 proteasome_alpha_type_ 100.0 2.3E-37 5.1E-42 237.9 20.2 151 3-156 52-207 (207)
24 cd03756 proteasome_alpha_arche 100.0 4.3E-37 9.2E-42 237.1 21.1 154 3-157 53-210 (211)
25 cd03754 proteasome_alpha_type_ 100.0 3.8E-37 8.3E-42 237.9 20.1 153 3-156 54-215 (215)
26 cd03753 proteasome_alpha_type_ 100.0 9.1E-37 2E-41 235.6 20.4 152 4-156 53-213 (213)
27 cd01906 proteasome_protease_Hs 100.0 1.5E-36 3.2E-41 228.5 20.7 153 4-156 27-182 (182)
28 TIGR03691 20S_bact_alpha prote 100.0 1.7E-36 3.7E-41 235.7 18.6 167 6-172 48-225 (228)
29 cd01911 proteasome_alpha prote 100.0 4.6E-36 1E-40 231.0 19.5 152 4-156 53-209 (209)
30 KOG0178|consensus 100.0 2E-36 4.3E-41 224.8 15.6 160 4-163 58-223 (249)
31 KOG0174|consensus 100.0 8.5E-36 1.8E-40 218.9 15.2 172 3-175 45-217 (224)
32 PF00227 Proteasome: Proteasom 100.0 1.2E-34 2.6E-39 219.5 20.5 150 7-156 35-190 (190)
33 KOG0183|consensus 100.0 8.6E-36 1.9E-40 221.9 11.8 163 5-171 57-226 (249)
34 KOG0179|consensus 100.0 8.9E-35 1.9E-39 215.7 16.6 168 1-168 53-232 (235)
35 KOG0181|consensus 100.0 2.1E-34 4.6E-39 211.7 10.8 164 5-171 59-226 (233)
36 KOG0184|consensus 100.0 4.6E-34 1E-38 213.6 12.4 168 5-172 61-233 (254)
37 KOG0863|consensus 100.0 2.3E-33 5E-38 210.9 14.6 156 5-160 57-219 (264)
38 KOG0182|consensus 100.0 9.5E-33 2E-37 205.3 15.2 169 3-172 61-236 (246)
39 KOG0177|consensus 100.0 1.7E-32 3.7E-37 200.7 14.5 161 3-163 27-190 (200)
40 KOG0180|consensus 100.0 6.9E-31 1.5E-35 189.8 14.0 164 5-168 36-201 (204)
41 KOG0175|consensus 100.0 5.7E-31 1.2E-35 200.7 13.1 160 3-162 97-256 (285)
42 KOG0173|consensus 100.0 1.4E-30 3.1E-35 198.1 15.0 168 3-173 63-230 (271)
43 PRK05456 ATP-dependent proteas 99.9 1.7E-26 3.7E-31 172.2 15.6 140 3-155 27-171 (172)
44 cd01913 protease_HslV Protease 99.9 2.5E-26 5.5E-31 170.3 16.0 140 3-155 26-170 (171)
45 cd01901 Ntn_hydrolase The Ntn 99.9 1.2E-25 2.6E-30 164.6 18.3 134 5-138 28-163 (164)
46 TIGR03692 ATP_dep_HslV ATP-dep 99.9 1.4E-25 3E-30 166.4 15.9 140 3-155 26-170 (171)
47 KOG0185|consensus 99.9 3.7E-25 8.1E-30 167.1 12.7 168 6-174 70-244 (256)
48 COG5405 HslV ATP-dependent pro 99.0 2.2E-09 4.8E-14 77.7 7.6 140 5-156 32-175 (178)
49 COG3484 Predicted proteasome-t 98.8 9.3E-08 2E-12 71.8 11.6 144 18-162 45-204 (255)
50 KOG3361|consensus 91.7 0.28 6.1E-06 34.8 3.7 44 89-132 71-114 (157)
51 PF09894 DUF2121: Uncharacteri 91.4 1 2.3E-05 34.1 6.7 50 110-159 131-180 (194)
52 COG4079 Uncharacterized protei 79.1 9.1 0.0002 30.3 6.3 50 110-159 132-181 (293)
53 COG4245 TerY Uncharacterized p 74.1 5.7 0.00012 30.2 3.9 47 128-174 22-68 (207)
54 COG3193 GlcG Uncharacterized p 72.9 21 0.00045 25.8 6.4 44 121-168 5-48 (141)
55 PRK09732 hypothetical protein; 70.3 26 0.00055 25.1 6.5 45 122-170 5-49 (134)
56 PF07499 RuvA_C: RuvA, C-termi 60.7 4.9 0.00011 23.1 1.0 33 104-136 12-45 (47)
57 cd01784 rasfadin_RA Ubiquitin- 53.3 27 0.00059 23.0 3.7 50 121-176 20-69 (87)
58 PF03928 DUF336: Domain of unk 50.5 40 0.00087 23.6 4.6 41 123-167 2-42 (132)
59 PF00788 RA: Ras association ( 48.3 35 0.00075 21.8 3.8 46 122-172 25-70 (93)
60 cd01782 AF6_RA_repeat1 Ubiquit 41.5 1.1E+02 0.0024 21.1 5.3 51 121-174 43-93 (112)
61 PF05593 RHS_repeat: RHS Repea 37.8 43 0.00094 17.9 2.5 25 82-106 2-26 (38)
62 PF10632 He_PIG_assoc: He_PIG 37.7 40 0.00087 17.4 2.1 22 75-96 5-26 (29)
63 KOG3652|consensus 37.2 82 0.0018 28.9 5.2 114 22-141 192-305 (1215)
64 TIGR02261 benz_CoA_red_D benzo 37.2 66 0.0014 25.8 4.3 54 75-135 101-157 (262)
65 PF11211 DUF2997: Protein of u 36.1 66 0.0014 18.6 3.2 31 89-119 3-33 (48)
66 PF04539 Sigma70_r3: Sigma-70 35.7 73 0.0016 19.7 3.7 31 33-63 3-33 (78)
67 cd01768 RA RA (Ras-associating 35.4 1.2E+02 0.0025 19.2 6.3 46 122-172 21-66 (87)
68 PRK11508 sulfur transfer prote 35.1 1.1E+02 0.0023 21.1 4.5 34 26-63 40-73 (109)
69 COG3140 Uncharacterized protei 33.7 80 0.0017 18.9 3.2 34 112-145 16-49 (60)
70 TIGR01643 YD_repeat_2x YD repe 33.2 56 0.0012 17.5 2.5 11 90-100 10-20 (42)
71 cd04513 Glycosylasparaginase G 32.1 1.8E+02 0.004 23.3 6.1 59 101-162 186-248 (263)
72 TIGR03192 benz_CoA_bzdQ benzoy 31.8 1E+02 0.0022 25.1 4.7 53 74-133 128-183 (293)
73 COG0822 IscU NifU homolog invo 31.2 1.7E+02 0.0037 21.2 5.4 54 87-141 44-98 (150)
74 PF01592 NifU_N: NifU-like N t 30.7 1.3E+02 0.0028 20.9 4.6 54 89-142 42-96 (126)
75 PF14804 Jag_N: Jag N-terminus 30.0 83 0.0018 18.5 2.9 28 124-158 5-32 (52)
76 PF06018 CodY: CodY GAF-like d 29.9 2.4E+02 0.0052 21.2 7.6 68 32-120 2-69 (177)
77 PRK14065 exodeoxyribonuclease 29.9 1.6E+02 0.0034 19.4 4.4 31 110-140 32-62 (86)
78 PF01242 PTPS: 6-pyruvoyl tetr 29.1 1.1E+02 0.0024 20.9 4.1 46 23-68 43-98 (123)
79 PF14593 PH_3: PH domain; PDB: 28.8 57 0.0012 22.2 2.4 16 84-99 36-51 (104)
80 TIGR02259 benz_CoA_red_A benzo 28.1 1.1E+02 0.0024 26.3 4.4 51 76-133 272-325 (432)
81 PF06057 VirJ: Bacterial virul 28.0 57 0.0012 24.9 2.5 33 50-82 44-76 (192)
82 TIGR03342 dsrC_tusE_dsvC sulfu 27.6 1.7E+02 0.0037 20.1 4.6 35 26-64 39-73 (108)
83 PF05113 DUF693: Protein of un 27.4 2.2E+02 0.0049 23.1 5.7 57 75-133 98-157 (314)
84 PRK11325 scaffold protein; Pro 27.3 1.7E+02 0.0036 20.5 4.7 51 90-140 46-96 (127)
85 PF08269 Cache_2: Cache domain 27.1 1E+02 0.0022 19.9 3.4 36 122-162 33-68 (95)
86 COG4784 Putative Zn-dependent 27.1 81 0.0018 26.6 3.4 58 111-168 336-393 (479)
87 PF01726 LexA_DNA_bind: LexA D 27.0 1.3E+02 0.0029 18.4 3.6 21 41-61 16-36 (65)
88 KOG1523|consensus 26.8 2.8E+02 0.006 23.2 6.3 47 74-121 261-309 (361)
89 cd04512 Ntn_Asparaginase_2_lik 26.2 2.4E+02 0.0052 22.4 5.8 55 101-161 175-233 (248)
90 COG4728 Uncharacterized protei 25.6 68 0.0015 21.9 2.2 29 10-38 9-37 (124)
91 COG0771 MurD UDP-N-acetylmuram 25.3 74 0.0016 27.6 3.0 60 74-137 346-411 (448)
92 cd04702 ASRGL1_like ASRGL1_lik 25.3 2.4E+02 0.0053 22.6 5.7 55 101-161 178-236 (261)
93 COG1754 Uncharacterized C-term 25.1 66 0.0014 26.1 2.4 71 78-153 77-151 (298)
94 PF14555 UBA_4: UBA-like domai 24.1 1E+02 0.0022 17.0 2.5 26 104-132 10-35 (43)
95 PF03989 DNA_gyraseA_C: DNA gy 23.5 78 0.0017 17.6 2.0 24 152-176 2-25 (48)
96 PRK14606 ruvA Holliday junctio 23.4 1.2E+02 0.0025 23.0 3.4 35 103-137 151-185 (188)
97 cd01262 PH_PDK1 3-Phosphoinosi 23.0 62 0.0013 21.5 1.7 16 84-99 24-39 (89)
98 COG4537 ComGC Competence prote 22.3 2.2E+02 0.0048 19.4 4.2 28 30-57 50-78 (107)
99 KOG3984|consensus 22.2 47 0.001 26.3 1.1 15 163-177 45-59 (286)
100 PF14688 DUF4461: Domain of un 21.0 2.5E+02 0.0053 23.1 5.1 53 43-102 256-312 (313)
101 PF07104 DUF1366: Protein of u 20.6 94 0.002 21.7 2.2 14 125-138 44-57 (116)
102 KOG3087|consensus 20.1 3.6E+02 0.0077 21.0 5.4 58 85-145 74-134 (229)
No 1
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-43 Score=267.32 Aligned_cols=161 Identities=64% Similarity=1.072 Sum_probs=156.8
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+|||+|++|++|+++|..+|++.+.+++|.+++.|++.++++++++.+|+++++++|.+|++||+|++|+||||
T Consensus 26 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~~~~~v~~li~G~D 105 (188)
T cd03761 26 IASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTMICGWD 105 (188)
T ss_pred EEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++.+||..+.+||..+++.++|++|+++|++
T Consensus 106 ~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~ 185 (188)
T cd03761 106 KTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWR 185 (188)
T ss_pred CCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred E
Q psy11707 163 G 163 (177)
Q Consensus 163 ~ 163 (177)
+
T Consensus 186 ~ 186 (188)
T cd03761 186 K 186 (188)
T ss_pred E
Confidence 4
No 2
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-42 Score=268.26 Aligned_cols=168 Identities=36% Similarity=0.470 Sum_probs=157.5
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC--CCceEEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG--TGLSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~--~P~~v~~lvaG 80 (177)
+.+++.+|||+|+|||+|++||+.+|++.++++++.+++.|++.++++++++.+++++++++|.+|+ |||+|++|+||
T Consensus 56 ~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG 135 (236)
T COG0638 56 IASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAG 135 (236)
T ss_pred ecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEE
Confidence 5677899999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCc
Q psy11707 81 WDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQW 160 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg 160 (177)
+|+++|+||++||+|++.+++++|+|+|+..+.++||+.|+++|+.+||++++++||+.+.+||..++++++|++++++
T Consensus 136 ~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~- 214 (236)
T COG0638 136 VDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKD- 214 (236)
T ss_pred EcCCCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcC-
Confidence 9987799999999999999999999999999999999999999999999999999999999999988999999999996
Q ss_pred eEEEEecCCCC
Q psy11707 161 NQGRFLGHQKG 171 (177)
Q Consensus 161 ~~~~~l~~~~~ 171 (177)
...+.+...++
T Consensus 215 ~~~~~~~~~~~ 225 (236)
T COG0638 215 EGFRKLDGEEI 225 (236)
T ss_pred CCeEEcCHHHH
Confidence 22334554443
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-42 Score=260.01 Aligned_cols=163 Identities=22% Similarity=0.216 Sum_probs=155.8
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEeC
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDK 83 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d~ 83 (177)
.+++.+|||+|++|++|++||..+|++.+.+++|.+++.|++.++.+++++.+|++|++++|.++.+||+|++|+||||+
T Consensus 30 ~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~ 109 (195)
T cd03759 30 VSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDP 109 (195)
T ss_pred EecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcC
Confidence 45678999999999999999999999999999999999999999999999999999999999888899999999999995
Q ss_pred -CCCeEEEEcCCCceeeec-eeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 84 -RGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 84 -~gp~ly~id~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
.+|+||.+||+|++..++ ++|+|+|+..++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|+
T Consensus 110 ~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~ 189 (195)
T cd03759 110 DGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKV 189 (195)
T ss_pred CCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcE
Confidence 569999999999998887 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q psy11707 162 QGRFL 166 (177)
Q Consensus 162 ~~~~l 166 (177)
+++.|
T Consensus 190 ~~~~~ 194 (195)
T cd03759 190 TTRTL 194 (195)
T ss_pred EEEec
Confidence 88765
No 4
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-41 Score=259.55 Aligned_cols=161 Identities=27% Similarity=0.353 Sum_probs=154.1
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC--CCceEEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG--TGLSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~--~P~~v~~lvaG 80 (177)
+.+++.+|||+|+++++|++||..+|++.+.++++.+++.|++.++++++++.+++++++++|.+++ |||++++|++|
T Consensus 27 ~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~~li~G 106 (193)
T cd03758 27 VLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAG 106 (193)
T ss_pred EEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999987654 59999999999
Q ss_pred EeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 81 WDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 81 ~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++.+||..+.+||..++++++|++|+++
T Consensus 107 ~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~ 186 (193)
T cd03758 107 YDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKD 186 (193)
T ss_pred EcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCC
Confidence 996 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEE
Q psy11707 160 WNQG 163 (177)
Q Consensus 160 g~~~ 163 (177)
|++.
T Consensus 187 g~~~ 190 (193)
T cd03758 187 GIRD 190 (193)
T ss_pred CeEe
Confidence 9765
No 5
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=9.5e-41 Score=252.53 Aligned_cols=159 Identities=34% Similarity=0.508 Sum_probs=154.4
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+|||+|+++++|+++|..+|++.+.++++.+++.|+..++.+++++.+++++++++|.++.|||+|++|+||||
T Consensus 27 i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d 106 (185)
T TIGR03634 27 VASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVD 106 (185)
T ss_pred EecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEe
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
++||+||.+||+|++.+++++++|+|+.+++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|+
T Consensus 107 ~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 107 EEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred CCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9899999999999999999999999999999999999999999999999999999999999999999999999999984
No 6
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-40 Score=257.36 Aligned_cols=165 Identities=20% Similarity=0.189 Sum_probs=157.2
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+..++.+||++|+++++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.+|.+||+|++|+||||
T Consensus 34 ~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D 113 (212)
T cd03757 34 ILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGID 113 (212)
T ss_pred eEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEc
Confidence 44678899999999999999999999999999999999999999999999999999999999988778999999999999
Q ss_pred C-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHHHhccCCCCCcEE
Q psy11707 83 K-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH---------WNLTDEEAHQLARKSIYHATYRDFASGGLIR 152 (177)
Q Consensus 83 ~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~---------~~~s~~ea~~l~~~~l~~~~~~d~~~g~~ie 152 (177)
+ .+|+||.+||+|++.+++++|+|+|+.+++++||+.|+ ++||.+||++++++||+.+.+||..+++.++
T Consensus 114 ~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~ 193 (212)
T cd03757 114 EEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLE 193 (212)
T ss_pred CCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEE
Confidence 6 56999999999999999999999999999999999975 8999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEec
Q psy11707 153 GNASGQQWNQGRFLG 167 (177)
Q Consensus 153 v~iitkdg~~~~~l~ 167 (177)
|++|+++|++.+.++
T Consensus 194 i~iit~~g~~~~~~~ 208 (212)
T cd03757 194 IVIITKDGIEEETFP 208 (212)
T ss_pred EEEEcCCCEEEEeec
Confidence 999999999887765
No 7
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-40 Score=250.28 Aligned_cols=160 Identities=36% Similarity=0.491 Sum_probs=155.1
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|+++++++++|..+|++.+.+.++.+++.|++.++++++++.+++++++.+|.++.|||+|++|+||||
T Consensus 26 ~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d 105 (188)
T cd03764 26 IASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVD 105 (188)
T ss_pred EecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
+++|+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+.+||++++++||+.+.+||..++++++|++|+++|.+
T Consensus 106 ~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~ 185 (188)
T cd03764 106 EEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYK 185 (188)
T ss_pred CCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999854
No 8
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-40 Score=249.31 Aligned_cols=161 Identities=29% Similarity=0.439 Sum_probs=154.4
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEeC
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDK 83 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d~ 83 (177)
.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.+| +||+|++|+||||+
T Consensus 27 ~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ii~G~d~ 105 (188)
T cd03762 27 ANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYK-EMLSAGIIVAGWDE 105 (188)
T ss_pred EcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhcc-ccceeeEEEEEEcC
Confidence 45688999999999999999999999999999999999999999999999999999999999986 77999999999996
Q ss_pred -CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 84 -RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 84 -~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
+||+||.+||+|++.+++++++|+|+.+++++||+.|+++||.+||++++++||..+.+||..+++.++|++|+++|++
T Consensus 106 ~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~ 185 (188)
T cd03762 106 QNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVE 185 (188)
T ss_pred CCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEE
Q psy11707 163 GRF 165 (177)
Q Consensus 163 ~~~ 165 (177)
+++
T Consensus 186 ~~~ 188 (188)
T cd03762 186 RKF 188 (188)
T ss_pred EeC
Confidence 653
No 9
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-40 Score=248.57 Aligned_cols=160 Identities=25% Similarity=0.356 Sum_probs=153.7
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+|||+|+++++|+++|..+|++.+.+.++.+++.|+++++++++++.+++++++.+|.+++ ||+|++|+||||
T Consensus 26 ~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~-p~~v~~ivaG~d 104 (189)
T cd03763 26 VADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQG-HIGAALVLGGVD 104 (189)
T ss_pred EEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC-ccceeEEEEeEc
Confidence 3456889999999999999999999999999999999999999999999999999999999998865 999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
++||+||.+||+|++.+++++|+|+++..++++||++|+++||.+||++++++||+.+.+||..++++++|++|+++|++
T Consensus 105 ~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~ 184 (189)
T cd03763 105 YTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVE 184 (189)
T ss_pred CCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred E
Q psy11707 163 G 163 (177)
Q Consensus 163 ~ 163 (177)
+
T Consensus 185 ~ 185 (189)
T cd03763 185 Y 185 (189)
T ss_pred E
Confidence 4
No 10
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.6e-40 Score=249.97 Aligned_cols=161 Identities=23% Similarity=0.267 Sum_probs=151.8
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHhcC--CCCceEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCR-LYELRNGERISVAAASKLMCNMAYNYK--GTGLSMGMMIA 79 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~la~~i~~~~~~~~--~~P~~v~~lva 79 (177)
+.+++.+|||+|+++++|+++|..+|++.+.+++|.+++ .+++.++.+++++.+|+++++++|.++ .|||+|++|+|
T Consensus 28 ~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~iia 107 (197)
T cd03760 28 ARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVG 107 (197)
T ss_pred eecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEE
Confidence 445788999999999999999999999999999999987 577889999999999999999988776 47999999999
Q ss_pred EEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 80 GWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW--NLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 80 G~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
|||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||.+||++++++||..+.+||..+++.++|++|
T Consensus 108 G~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii 187 (197)
T cd03760 108 GVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVV 187 (197)
T ss_pred EEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEE
Confidence 9996 789999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCceEE
Q psy11707 157 GQQWNQG 163 (177)
Q Consensus 157 tkdg~~~ 163 (177)
+++|++.
T Consensus 188 ~~~g~~~ 194 (197)
T cd03760 188 TKEGVEI 194 (197)
T ss_pred CCCCEEe
Confidence 9999753
No 11
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=6.5e-40 Score=257.68 Aligned_cols=167 Identities=59% Similarity=1.034 Sum_probs=158.8
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|++||..+|++.+.+++|.+++.|++.++++++++.+|++|++++|.+|..|+.+++|+||||
T Consensus 65 i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D 144 (247)
T PTZ00488 65 IASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWD 144 (247)
T ss_pred EEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999888888889999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++++||..+.+||..+++.++|++|+++|+
T Consensus 145 ~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~- 223 (247)
T PTZ00488 145 KKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGW- 223 (247)
T ss_pred CCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCcc-
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred EEEecCCCC
Q psy11707 163 GRFLGHQKG 171 (177)
Q Consensus 163 ~~~l~~~~~ 171 (177)
+.++++|+
T Consensus 224 -~~l~~~ei 231 (247)
T PTZ00488 224 -KKISADDC 231 (247)
T ss_pred -EECCHHHH
Confidence 46776665
No 12
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-39 Score=244.71 Aligned_cols=160 Identities=41% Similarity=0.627 Sum_probs=155.2
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEeC
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDK 83 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d~ 83 (177)
.+++.+|||+|+++++|+++|+.+|++.+.++++.+++.|++.++++++++.+++++++.+|.++++||++++|+||||+
T Consensus 27 ~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~ 106 (189)
T cd01912 27 ASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDK 106 (189)
T ss_pred EcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEcC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 84 -RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 84 -~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
++|+||.+||+|++.+++++|+|.++++++++||+.|+++||.+||++++.+||..+.++|..+++.++|++|+++|+.
T Consensus 107 ~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~ 186 (189)
T cd01912 107 GGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVE 186 (189)
T ss_pred CCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred E
Q psy11707 163 G 163 (177)
Q Consensus 163 ~ 163 (177)
.
T Consensus 187 ~ 187 (189)
T cd01912 187 E 187 (189)
T ss_pred E
Confidence 4
No 13
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-39 Score=252.86 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=153.1
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.++++|++++|.|++ |||+|++|+
T Consensus 52 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li 131 (227)
T cd03750 52 IDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLI 131 (227)
T ss_pred cCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEE
Confidence 3566889999999999999999999999999999999999999999999999999999999998864 799999999
Q ss_pred EEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC
Q psy11707 79 AGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ 158 (177)
Q Consensus 79 aG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk 158 (177)
+|||+.||+||.+||+|++.+++++|+|+|+.+++++||++|+++||++||++++++||..+.+||. ++.+++|++|++
T Consensus 132 ~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~ 210 (227)
T cd03750 132 AGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGE 210 (227)
T ss_pred EEEeCCCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEEC
Confidence 9999889999999999999999999999999999999999999999999999999999999998875 788999999998
Q ss_pred CceEEEEecCCC
Q psy11707 159 QWNQGRFLGHQK 170 (177)
Q Consensus 159 dg~~~~~l~~~~ 170 (177)
++. .+.+.++|
T Consensus 211 ~~~-~~~~~~~e 221 (227)
T cd03750 211 TKG-FRLLTPAE 221 (227)
T ss_pred CCC-EEECCHHH
Confidence 732 23454444
No 14
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-39 Score=251.44 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=146.5
Q ss_pred CccCceEEec----CcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHhc----C------CC
Q psy11707 6 GSMKKIVEIN----DYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGE-RISVAAASKLMCNMAYNY----K------GT 70 (177)
Q Consensus 6 ~~~~ki~~i~----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~-~~~~~~la~~i~~~~~~~----~------~~ 70 (177)
++.+|||+|+ +|++|+.||+.||++.+++++|.+++.|+++++. +++++.+|++++++++.+ . .|
T Consensus 28 ~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~r 107 (236)
T cd03765 28 STYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGI 107 (236)
T ss_pred cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCc
Confidence 3689999998 8999999999999999999999999999999999 899999999999986552 2 37
Q ss_pred CceEEEEEEEEe-CCCCeEEEEcCCCceeee----ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccC
Q psy11707 71 GLSMGMMIAGWD-KRGPQLYYVDSDGQRIKG----NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDF 145 (177)
Q Consensus 71 P~~v~~lvaG~d-~~gp~ly~id~~G~~~~~----~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~ 145 (177)
||+|++|+|||| +.||+||++||+|++.++ +++|+|. +.+++++||++|+++||++||++++++||..+..||.
T Consensus 108 p~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~ 186 (236)
T cd03765 108 DFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNL 186 (236)
T ss_pred ceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999 478999999999999999 4589996 7999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEcCCceEE
Q psy11707 146 ASGGLIRGNASGQQWNQG 163 (177)
Q Consensus 146 ~~g~~iev~iitkdg~~~ 163 (177)
.+++.++|++|+|+|.+.
T Consensus 187 ~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 187 SVGPPLDLLVYERDSLQV 204 (236)
T ss_pred CCCCCEEEEEEECCCeee
Confidence 999999999999998875
No 15
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=5.1e-39 Score=249.87 Aligned_cols=167 Identities=24% Similarity=0.332 Sum_probs=158.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|+++++|++||..+|++.+.+.++.++..|++.++++++++.+++.+++++|.|++ |||+|++||
T Consensus 54 ~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll 133 (224)
T TIGR03633 54 VEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLI 133 (224)
T ss_pred cCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEE
Confidence 3457889999999999999999999999999999999999999999999999999999999998864 799999999
Q ss_pred EEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC
Q psy11707 79 AGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ 158 (177)
Q Consensus 79 aG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk 158 (177)
||+|+.+|+||.+||+|++.+++++|+|+++.+++++||+.|+++|+.+||++++++||..+.+ |..+++.++|++|++
T Consensus 134 ~G~d~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~ 212 (224)
T TIGR03633 134 AGVDDGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITV 212 (224)
T ss_pred EEEeCCcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEc
Confidence 9999889999999999999999999999999999999999999999999999999999999888 888999999999999
Q ss_pred CceEEEEecCCC
Q psy11707 159 QWNQGRFLGHQK 170 (177)
Q Consensus 159 dg~~~~~l~~~~ 170 (177)
+|..++.++++|
T Consensus 213 ~g~~~~~~~~~~ 224 (224)
T TIGR03633 213 EDKKFRKLSVEE 224 (224)
T ss_pred CCCcEEECCCCC
Confidence 987778888775
No 16
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.4e-39 Score=252.73 Aligned_cols=168 Identities=24% Similarity=0.299 Sum_probs=158.5
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEE
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIA 79 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lva 79 (177)
..++.+||++|+++++|++||..+|++.+.++++.+++.|++.++.+++++.+++.+++.+|.|++ |||+|++|+|
T Consensus 62 ~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ila 141 (241)
T PRK03996 62 EPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIA 141 (241)
T ss_pred CCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999998864 6999999999
Q ss_pred EEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 80 GWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 80 G~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
|||+.||+||.+||+|++.+++++|+|.|+..++++||+.|+++|+.+||++++++||..+.++ ..+++.++|++|+++
T Consensus 142 G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~ 220 (241)
T PRK03996 142 GVDDGGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVE 220 (241)
T ss_pred EEeCCcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECC
Confidence 9998899999999999999999999999999999999999999999999999999999999875 557899999999999
Q ss_pred ceEEEEecCCCCC
Q psy11707 160 WNQGRFLGHQKGP 172 (177)
Q Consensus 160 g~~~~~l~~~~~~ 172 (177)
|..++.++++|+.
T Consensus 221 ~~~~~~~~~~ei~ 233 (241)
T PRK03996 221 TKKFRKLSVEEIE 233 (241)
T ss_pred CCcEEECCHHHHH
Confidence 8888889887764
No 17
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.3e-38 Score=251.61 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=157.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|+++++|+++|..+|++.+.+.+|.+++.|++.++.+++++.+++.++..+|.|++ |||+|++|+
T Consensus 57 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li 136 (253)
T PTZ00246 57 DPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLF 136 (253)
T ss_pred cCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEE
Confidence 4455789999999999999999999999999999999999999999999999999999999999874 799999999
Q ss_pred EEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEc
Q psy11707 79 AGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASG 157 (177)
Q Consensus 79 aG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iit 157 (177)
||||+ .||+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+.+||++++++||..+.++|..+++.++|++|+
T Consensus 137 ~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~ 216 (253)
T PTZ00246 137 AGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILS 216 (253)
T ss_pred EEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEe
Confidence 99995 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc----eEEEEecCCCC
Q psy11707 158 QQW----NQGRFLGHQKG 171 (177)
Q Consensus 158 kdg----~~~~~l~~~~~ 171 (177)
++| ..++.|.++|+
T Consensus 217 ~~~~~~~~~~~~l~~~ei 234 (253)
T PTZ00246 217 HGETDGEPIQKMLSEKEI 234 (253)
T ss_pred cCCcCCCCCeEECCHHHH
Confidence 986 22567776654
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-38 Score=242.72 Aligned_cols=154 Identities=24% Similarity=0.278 Sum_probs=147.0
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|+++++|++||..+|++.+.+++|.+++.|++.++++++++.+++.|+..+|.|++ |||+|++|+
T Consensus 55 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li 134 (213)
T cd03752 55 DQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLY 134 (213)
T ss_pred CCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEE
Confidence 3456889999999999999999999999999999999999999999999999999999999998864 799999999
Q ss_pred EEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 79 AGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 79 aG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
+|||+ .||+||.+||+|++.+++++|+|+++.+++++||+.|+++||.+||++++++||..+.+||..++.+++|+++
T Consensus 135 ~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 135 AGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99995 7899999999999999999999999999999999999999999999999999999999999888899999875
No 19
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.4e-38 Score=245.27 Aligned_cols=168 Identities=23% Similarity=0.303 Sum_probs=153.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC---CCCceEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK---GTGLSMGMMIA 79 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~---~~P~~v~~lva 79 (177)
+.+++.+|||+|++|++|+++|..+|++.+.+++|.+++.|++.++.+++++.+|++|++++|.++ .|||+|++|+|
T Consensus 28 ~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v~~iia 107 (219)
T TIGR03690 28 IASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLLA 107 (219)
T ss_pred EEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999875 37999999999
Q ss_pred EEeC--CCCeEEEEcCCCc-eeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCc------
Q psy11707 80 GWDK--RGPQLYYVDSDGQ-RIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGL------ 150 (177)
Q Consensus 80 G~d~--~gp~ly~id~~G~-~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~------ 150 (177)
|||+ .+|+||.+||+|+ +..++++|+|+|+.+++++||+.|+++||.+||++++++||..+.++|..+++.
T Consensus 108 G~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~ 187 (219)
T TIGR03690 108 GYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGI 187 (219)
T ss_pred EECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCccccccc
Confidence 9995 5799999999995 667899999999999999999999999999999999999999999999877754
Q ss_pred -EEEEEEcCCceEEEEecCCCCC
Q psy11707 151 -IRGNASGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 151 -iev~iitkdg~~~~~l~~~~~~ 172 (177)
++|++|+++|. +.++++|+.
T Consensus 188 ~~ei~ii~~~g~--~~l~~~ei~ 208 (219)
T TIGR03690 188 YPTVVVITADGA--RRVPESELE 208 (219)
T ss_pred ccEEEEEccCce--EEcCHHHHH
Confidence 39999998874 578777653
No 20
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5e-38 Score=242.27 Aligned_cols=153 Identities=22% Similarity=0.257 Sum_probs=145.5
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----CCCceEEEEEEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK----GTGLSMGMMIAG 80 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~----~~P~~v~~lvaG 80 (177)
.++.+||++|+++++|++||+.+|++.+.+++|.+++.|+++++++++++.+|+.+++++|.++ .|||+|++|++|
T Consensus 52 ~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G 131 (211)
T cd03749 52 SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAG 131 (211)
T ss_pred CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999999998875 479999999999
Q ss_pred EeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEc
Q psy11707 81 WDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH--WNLTDEEAHQLARKSIYHATYRDF-ASGGLIRGNASG 157 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~~s~~ea~~l~~~~l~~~~~~d~-~~g~~iev~iit 157 (177)
||+.||+||++||+|++.+++++|+|+|+..++++||++|+ ++|+.+||+++++++|+.++++|. .++.+|||++|+
T Consensus 132 ~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 132 YDESGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred EcCCCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99889999999999999999999999999999999999998 599999999999999999999886 888999999984
No 21
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.6e-38 Score=242.55 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=145.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+..++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|++.++.+++++.++++|++++|.|++ |||+|++|+
T Consensus 55 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li 134 (212)
T cd03751 55 YEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLL 134 (212)
T ss_pred cCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999864 799999999
Q ss_pred EEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 79 AGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 79 aG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
+|||++||+||++||+|++.+++++|+|+|+..++++||++|+++||.+||+++++++|+.+.+.+...+.++||.++
T Consensus 135 ~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 135 GGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EEEeCCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999988999999999999999999999999999999999999999999999999999999999866667788998874
No 22
>KOG0176|consensus
Probab=100.00 E-value=4.8e-39 Score=236.68 Aligned_cols=166 Identities=25% Similarity=0.291 Sum_probs=152.9
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC---------CCCceE
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK---------GTGLSM 74 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~---------~~P~~v 74 (177)
.++++.||++|++||+|++||+.||++++++++|.++++|++.|+++++++.+.+.++++.-.|. .|||||
T Consensus 60 ~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGV 139 (241)
T KOG0176|consen 60 EPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGV 139 (241)
T ss_pred CchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcce
Confidence 46789999999999999999999999999999999999999999999999999999999988775 289999
Q ss_pred EEEEEEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEE
Q psy11707 75 GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGN 154 (177)
Q Consensus 75 ~~lvaG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ 154 (177)
++|+||+|++||+||+.||||++++|++-|+|+|++-+++.|++.|+++|+++||+.+++..|+.+.+. ..+..++++.
T Consensus 140 alliAG~D~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMee-Kl~~~Nvev~ 218 (241)
T KOG0176|consen 140 ALLIAGHDETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEE-KLNSNNVEVA 218 (241)
T ss_pred EEEEeeccCCCceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH-hcCccceEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999974 4556789999
Q ss_pred EEcCCceEEEEecCCCC
Q psy11707 155 ASGQQWNQGRFLGHQKG 171 (177)
Q Consensus 155 iitkdg~~~~~l~~~~~ 171 (177)
+|+++|. +.++.++|+
T Consensus 219 ~vt~e~~-f~~~t~EE~ 234 (241)
T KOG0176|consen 219 VVTPEGE-FHIYTPEEV 234 (241)
T ss_pred EEcccCc-eEecCHHHH
Confidence 9999863 345555443
No 23
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-37 Score=237.91 Aligned_cols=151 Identities=19% Similarity=0.284 Sum_probs=142.7
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|++||+.+|++.+.+++|.+++.|++.++++++++.+++.+++++|.|++ |||+|++|+
T Consensus 52 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii 131 (207)
T cd03755 52 QDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLI 131 (207)
T ss_pred cCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999988864 699999999
Q ss_pred EEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 79 AGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 79 aG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
+|||+ .+|+||++||+|++.+++++|+|+|+.+++++||++|+++|+.+||++++++||..+.+ .++.++||+++
T Consensus 132 ~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 132 VGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred EEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 99996 58999999999999999999999999999999999999999999999999999999996 56788999875
No 24
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-37 Score=237.11 Aligned_cols=154 Identities=25% Similarity=0.330 Sum_probs=147.0
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|+++++|++||+.+|++.+.+.++.+++.|++.++++++++.+++.++..+|.|++ |||+|++|+
T Consensus 53 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll 132 (211)
T cd03756 53 VEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLI 132 (211)
T ss_pred cCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEE
Confidence 3456889999999999999999999999999999999999999999999999999999999998864 699999999
Q ss_pred EEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEc
Q psy11707 79 AGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASG 157 (177)
Q Consensus 79 aG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iit 157 (177)
+|||+.+|+||.+||+|++.+++++|+|+|+..++++||++|+++|+.+||++++++||..+.++|. ++.+++|++|+
T Consensus 133 ~G~D~~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 133 AGVDDGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred EEEeCCCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 9999989999999999999999999999999999999999999999999999999999999998776 88999999987
No 25
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-37 Score=237.95 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=144.1
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
|.+++.+||++|+++++|++||+.+|++.+.+++|.++..|+++++++++++.+|+.+++++|.|++ |||+|++|+
T Consensus 54 i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii 133 (215)
T cd03754 54 IDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMIL 133 (215)
T ss_pred cCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEE
Confidence 4556789999999999999999999999999999999999999999999999999999999888764 699999999
Q ss_pred EEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCC--C--CHHHHHHHHHHHHHHHHhccCCCCCcEEE
Q psy11707 79 AGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN--L--TDEEAHQLARKSIYHATYRDFASGGLIRG 153 (177)
Q Consensus 79 aG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~--~--s~~ea~~l~~~~l~~~~~~d~~~g~~iev 153 (177)
||||+ +||+||.+||+|++.+++++|+|+|+..++++||++|+++ | |.+||++++++||..+.+||.. ++++||
T Consensus 134 ~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei 212 (215)
T cd03754 134 IGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFK-ATEIEV 212 (215)
T ss_pred EEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCC-CCcEEE
Confidence 99995 7899999999999999999999999999999999999985 7 9999999999999999999965 889999
Q ss_pred EEE
Q psy11707 154 NAS 156 (177)
Q Consensus 154 ~ii 156 (177)
++|
T Consensus 213 ~~~ 215 (215)
T cd03754 213 GVV 215 (215)
T ss_pred EEC
Confidence 885
No 26
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-37 Score=235.59 Aligned_cols=152 Identities=24% Similarity=0.319 Sum_probs=144.0
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC---------CCceE
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG---------TGLSM 74 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~---------~P~~v 74 (177)
..++.+||++|+++++|++||+.+|++.+.+.++.+++.|++.++++++++.+++.+++++|.|++ |||+|
T Consensus 53 ~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v 132 (213)
T cd03753 53 EPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGV 132 (213)
T ss_pred CCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceE
Confidence 346789999999999999999999999999999999999999999999999999999999998764 79999
Q ss_pred EEEEEEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEE
Q psy11707 75 GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGN 154 (177)
Q Consensus 75 ~~lvaG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ 154 (177)
++|+||||+.||+||.+||+|++.+++++|+|++++.++++|++.|+++|+.+||++++++||+.+.+++ .++..+||+
T Consensus 133 ~~ii~G~D~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~ 211 (213)
T cd03753 133 ALLIAGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELA 211 (213)
T ss_pred EEEEEEEcCCCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEE
Confidence 9999999998999999999999999999999999999999999999999999999999999999988755 677889998
Q ss_pred EE
Q psy11707 155 AS 156 (177)
Q Consensus 155 ii 156 (177)
++
T Consensus 212 ~~ 213 (213)
T cd03753 212 TV 213 (213)
T ss_pred EC
Confidence 75
No 27
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.5e-36 Score=228.51 Aligned_cols=153 Identities=40% Similarity=0.572 Sum_probs=148.4
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC--CCceEEEEEEEE
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG--TGLSMGMMIAGW 81 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~--~P~~v~~lvaG~ 81 (177)
..++.+|||+|+++++|+++|..+|++.+.++++.++..|++.++.+++++.+++++++++|.+++ +||++++|+|||
T Consensus 27 ~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~ 106 (182)
T cd01906 27 ASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGV 106 (182)
T ss_pred cCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheEEEEEEE
Confidence 367889999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred eC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 82 DK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 82 d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
|. .+|+||.+||+|++.+++++|+|+++.+++++||+.|+++||.+||++++++||..+.++|..++++++|.+|
T Consensus 107 d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 107 DEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred eCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 97 7899999999999999999999999999999999999999999999999999999999999989999999875
No 28
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.7e-36 Score=235.73 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=151.2
Q ss_pred CccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhc---CCCCceEEEEEEEE
Q psy11707 6 GSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNG-ERISVAAASKLMCNMAYNY---KGTGLSMGMMIAGW 81 (177)
Q Consensus 6 ~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~i~~~~~~~---~~~P~~v~~lvaG~ 81 (177)
++.+|||+|+||++|+++|+.+|++.++++++.+++.|++.++ .+++++.+|+.+++.++.+ +.|||+|++|++||
T Consensus 48 ~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~ 127 (228)
T TIGR03691 48 RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEV 127 (228)
T ss_pred CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEE
Confidence 4679999999999999999999999999999999999999998 6899999999888887754 35899999999999
Q ss_pred eC--CCCeEEEEcCCCceeeec-eeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH--hccCCCCCcEEEEEE
Q psy11707 82 DK--RGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHAT--YRDFASGGLIRGNAS 156 (177)
Q Consensus 82 d~--~gp~ly~id~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~--~~d~~~g~~iev~ii 156 (177)
|+ .||+||.+||+|++.+++ ++|+|+|++.++++||++|+++||.+||++++++||..+. ++|..++.++||.++
T Consensus 128 d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii 207 (228)
T TIGR03691 128 GETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVL 207 (228)
T ss_pred cCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEE
Confidence 84 689999999999999976 8999999999999999999999999999999999999995 466788899999999
Q ss_pred cCCc--eEEEEecCCCCC
Q psy11707 157 GQQW--NQGRFLGHQKGP 172 (177)
Q Consensus 157 tkdg--~~~~~l~~~~~~ 172 (177)
++++ ..++.|+++|+.
T Consensus 208 ~k~~~~~~f~~l~~~ei~ 225 (228)
T TIGR03691 208 DRSRPRRAFRRITGEALE 225 (228)
T ss_pred eCCCCccceEECCHHHHH
Confidence 9764 347788887764
No 29
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=4.6e-36 Score=231.01 Aligned_cols=152 Identities=29% Similarity=0.359 Sum_probs=145.1
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEE
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIA 79 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lva 79 (177)
..++.+||++|+++++|++||..+|++.+.+.++.++..|++.++.+++++.+|+++++++|.|++ |||+|++|++
T Consensus 53 ~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~ 132 (209)
T cd01911 53 DPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIA 132 (209)
T ss_pred CCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEE
Confidence 346889999999999999999999999999999999999999999999999999999999987754 6999999999
Q ss_pred EEeCC-CCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 80 GWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 80 G~d~~-gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
|||++ ||+||.+||.|++.+++++++|+|+.+++++||+.|+++|+.+||++++.+||..+.++|. +++.++|+++
T Consensus 133 G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 133 GYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred EEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 99974 8999999999999999999999999999999999999999999999999999999999999 9999999875
No 30
>KOG0178|consensus
Probab=100.00 E-value=2e-36 Score=224.80 Aligned_cols=160 Identities=24% Similarity=0.306 Sum_probs=152.0
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEE
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIA 79 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lva 79 (177)
.+.+.+||++|+|||+|+++|+++|+..+++++|..+|.|.+++++++|++.|++.++++.|.||| ||||||+|.+
T Consensus 58 t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYa 137 (249)
T KOG0178|consen 58 TSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYA 137 (249)
T ss_pred ccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeee
Confidence 355789999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred EEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEc
Q psy11707 80 GWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL-TDEEAHQLARKSIYHATYRDFASGGLIRGNASG 157 (177)
Q Consensus 80 G~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~-s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iit 157 (177)
|||. .|.+||+.||||++..|++.++|.++..++..|+..|+++. ++++|..+|++.|..+.+.+..+...+|++.++
T Consensus 138 Gwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~ 217 (249)
T KOG0178|consen 138 GWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATIT 217 (249)
T ss_pred ceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEE
Confidence 9997 67999999999999999999999999999999999998865 599999999999999999999999999999999
Q ss_pred CCceEE
Q psy11707 158 QQWNQG 163 (177)
Q Consensus 158 kdg~~~ 163 (177)
+++.+.
T Consensus 218 k~~~k~ 223 (249)
T KOG0178|consen 218 KDCNKT 223 (249)
T ss_pred ecCCce
Confidence 996664
No 31
>KOG0174|consensus
Probab=100.00 E-value=8.5e-36 Score=218.86 Aligned_cols=172 Identities=28% Similarity=0.421 Sum_probs=165.2
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
|+++..+|+.+|.|+|+||.||.+||.|.+.+.++..+..|...++.++++...|+.++++.|.|+.. +...+|+||||
T Consensus 45 vanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re~-L~AgliVAGwD 123 (224)
T KOG0174|consen 45 VANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYREM-LSAGLIVAGWD 123 (224)
T ss_pred HHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHHh-hhcceEEeecc
Confidence 67889999999999999999999999999999999999999999999999999999999999999876 78899999999
Q ss_pred C-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 83 K-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 83 ~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
+ .|.++|.+--.|...+.++..-|+||.+++++++.+|+++|+.||++.+..+|+..++.||..+|+.|.+.+|+++|+
T Consensus 124 ~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gv 203 (224)
T KOG0174|consen 124 EKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGV 203 (224)
T ss_pred cccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCc
Confidence 7 789999998888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCC
Q psy11707 162 QGRFLGHQKGPNSG 175 (177)
Q Consensus 162 ~~~~l~~~~~~~~~ 175 (177)
+++++++|++|.|.
T Consensus 204 er~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 204 ERRFFPGDKLGQFA 217 (224)
T ss_pred eEEEecCCcccccc
Confidence 99999999999874
No 32
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.2e-34 Score=219.54 Aligned_cols=150 Identities=35% Similarity=0.487 Sum_probs=140.9
Q ss_pred ccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEe
Q psy11707 7 SMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNY----KGTGLSMGMMIAGWD 82 (177)
Q Consensus 7 ~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~----~~~P~~v~~lvaG~d 82 (177)
+.+|||+|+++++|++||..+|++.+.++++.++..|++.++.+++++.+++.+++.++.+ +.+|+++++|+||||
T Consensus 35 ~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d 114 (190)
T PF00227_consen 35 TVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYD 114 (190)
T ss_dssp TSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEE
T ss_pred ccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeec
Confidence 3699999999999999999999999999999999999999999999997777777666654 358999999999999
Q ss_pred CCC-CeEEEEcCCCceeee-ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 83 KRG-PQLYYVDSDGQRIKG-NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 83 ~~g-p~ly~id~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
+++ |+||.+||+|++.++ ++.|+|+|+++++++||+.|+++|+.+||++++++||+.+.++|..++++++|++|
T Consensus 115 ~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 115 EDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp TTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred cccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 765 999999999999999 69999999999999999999999999999999999999999999999999999986
No 33
>KOG0183|consensus
Probab=100.00 E-value=8.6e-36 Score=221.89 Aligned_cols=163 Identities=18% Similarity=0.284 Sum_probs=149.5
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIAG 80 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lvaG 80 (177)
.+...||..++||++|+|+|+.+|++.+++++|.+|+.|+++.+.|+|++.++++|+.+.|.||| ||||+++|++|
T Consensus 57 ~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~G 136 (249)
T KOG0183|consen 57 ERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGG 136 (249)
T ss_pred hhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEe
Confidence 45688999999999999999999999999999999999999999999999999999999999997 89999999999
Q ss_pred EeCCC-CeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEc
Q psy11707 81 WDKRG-PQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN--LTDEEAHQLARKSIYHATYRDFASGGLIRGNASG 157 (177)
Q Consensus 81 ~d~~g-p~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~--~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iit 157 (177)
+|++| |+||++||+|.+++|++.|+|.++..+..+||++|.++ .+..+++++++++|.++...+ +.+||+++++
T Consensus 137 fD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~ 213 (249)
T KOG0183|consen 137 FDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSG---GKNIEVAVMK 213 (249)
T ss_pred eCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcC---CCeeEEEEEe
Confidence 99865 99999999999999999999999999999999999876 788999999999999999743 4789999999
Q ss_pred CCceEEEEecCCCC
Q psy11707 158 QQWNQGRFLGHQKG 171 (177)
Q Consensus 158 kdg~~~~~l~~~~~ 171 (177)
+++- .++|..+++
T Consensus 214 ~~~~-~~~l~~~~I 226 (249)
T KOG0183|consen 214 RRKD-LKMLESEEI 226 (249)
T ss_pred cCCc-eeecCHHHH
Confidence 8852 456665543
No 34
>KOG0179|consensus
Probab=100.00 E-value=8.9e-35 Score=215.74 Aligned_cols=168 Identities=20% Similarity=0.199 Sum_probs=160.8
Q ss_pred CCCCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEE
Q psy11707 1 MSSSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAG 80 (177)
Q Consensus 1 ~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG 80 (177)
|+|.++...|||+++|+++++.||..||+..|...++.+...|++.++..|++..+|++|+.++|..|.+||.+..+++|
T Consensus 53 y~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaG 132 (235)
T KOG0179|consen 53 YNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAG 132 (235)
T ss_pred eeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCC-CCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCC-----------CCCCHHHHHHHHHHHHHHHHhccCCCC
Q psy11707 81 WDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH-----------WNLTDEEAHQLARKSIYHATYRDFASG 148 (177)
Q Consensus 81 ~d~~-gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~-----------~~~s~~ea~~l~~~~l~~~~~~d~~~g 148 (177)
+|++ ++.+|..||.|++.+..+.|-|+++..++++|+.... +.+++|+|++++..++..+.+||..+|
T Consensus 133 iDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tG 212 (235)
T KOG0179|consen 133 IDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTG 212 (235)
T ss_pred ccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccC
Confidence 9984 5999999999999999999999999999999998742 358999999999999999999999999
Q ss_pred CcEEEEEEcCCceEEEEecC
Q psy11707 149 GLIRGNASGQQWNQGRFLGH 168 (177)
Q Consensus 149 ~~iev~iitkdg~~~~~l~~ 168 (177)
+.++|+|++|||++++++|=
T Consensus 213 D~l~i~I~tk~gV~~e~~~L 232 (235)
T KOG0179|consen 213 DKLEICIITKDGVEVETLPL 232 (235)
T ss_pred CcEEEEEEecCCEEEEeeec
Confidence 99999999999999999873
No 35
>KOG0181|consensus
Probab=100.00 E-value=2.1e-34 Score=211.67 Aligned_cols=164 Identities=21% Similarity=0.253 Sum_probs=151.7
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIAG 80 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lvaG 80 (177)
..++.|+++|.++|+|.+||..+|++.+++..|+.++.|...+++++++..+...++..+|+||| ||||+++++||
T Consensus 59 ~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG 138 (233)
T KOG0181|consen 59 EESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAG 138 (233)
T ss_pred hhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEee
Confidence 34679999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred EeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCc
Q psy11707 81 WDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQW 160 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg 160 (177)
||+.+|.||++||||++..|+++|+|.+...++++||++|+++|.+++++..++..|++..+... +.+++||.++...+
T Consensus 139 ~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~ 217 (233)
T KOG0181|consen 139 WDEGGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENG 217 (233)
T ss_pred cCCCceeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999987554 56889999999554
Q ss_pred eEEEEecCCCC
Q psy11707 161 NQGRFLGHQKG 171 (177)
Q Consensus 161 ~~~~~l~~~~~ 171 (177)
++.|..+|+
T Consensus 218 --F~~lt~~eI 226 (233)
T KOG0181|consen 218 --FRRLTPAEI 226 (233)
T ss_pred --eeecCHHHH
Confidence 445655543
No 36
>KOG0184|consensus
Probab=100.00 E-value=4.6e-34 Score=213.64 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=157.8
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIAG 80 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lvaG 80 (177)
+.+..||+.|++||+|+++|+.+|.+.+.+++|.++..|+..++.++|...++.+++++.|.||. ||||++.++++
T Consensus 61 p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~ 140 (254)
T KOG0184|consen 61 PGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGS 140 (254)
T ss_pred cCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999985 89999999999
Q ss_pred EeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC-
Q psy11707 81 WDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ- 159 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd- 159 (177)
||.+||+||+++|||..+.++++|+|.|.+.+++.|||+--.+|+.+|+++.+.++|+.+.+.......++|+.|+..+
T Consensus 141 yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eT 220 (254)
T KOG0184|consen 141 YDDEGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEET 220 (254)
T ss_pred EeCCCceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeec
Confidence 9999999999999999999999999999999999999999899999999999999999999876666788999999976
Q ss_pred ceEEEEecCCCCC
Q psy11707 160 WNQGRFLGHQKGP 172 (177)
Q Consensus 160 g~~~~~l~~~~~~ 172 (177)
+..++.+|.+.+|
T Consensus 221 nG~h~~vp~el~~ 233 (254)
T KOG0184|consen 221 NGLHEKVPSELLE 233 (254)
T ss_pred CCccccCcHHHHH
Confidence 6788888875544
No 37
>KOG0863|consensus
Probab=100.00 E-value=2.3e-33 Score=210.91 Aligned_cols=156 Identities=23% Similarity=0.271 Sum_probs=147.9
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIAG 80 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lvaG 80 (177)
++..+||++|++|++++++|+++|++.+.+++|++|..+++.+++++++..+...+.+.+|..|| |||||.++++|
T Consensus 57 ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~g 136 (264)
T KOG0863|consen 57 SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAG 136 (264)
T ss_pred HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999876 79999999999
Q ss_pred EeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEc
Q psy11707 81 WDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH--WNLTDEEAHQLARKSIYHATYRD-FASGGLIRGNASG 157 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~~s~~ea~~l~~~~l~~~~~~d-~~~g~~iev~iit 157 (177)
||+.|||||+++|+|++.+++++++|+.|+.++++||++.. ++++.+|.+..+++||+.++..| ..++.+++|+|+.
T Consensus 137 YDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivg 216 (264)
T KOG0863|consen 137 YDESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVG 216 (264)
T ss_pred ecCCCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEe
Confidence 99999999999999999999999999999999999999975 59999999999999999999855 6778899999999
Q ss_pred CCc
Q psy11707 158 QQW 160 (177)
Q Consensus 158 kdg 160 (177)
||.
T Consensus 217 kd~ 219 (264)
T KOG0863|consen 217 KDE 219 (264)
T ss_pred CCC
Confidence 984
No 38
>KOG0182|consensus
Probab=100.00 E-value=9.5e-33 Score=205.33 Aligned_cols=169 Identities=19% Similarity=0.192 Sum_probs=158.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.++++..+|+|+.+|+|+++|..+|++..++++|.++.++++.+|.++|++.||++++++.|.|+| ||+||.+++
T Consensus 61 ld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~ 140 (246)
T KOG0182|consen 61 LDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATL 140 (246)
T ss_pred cccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEE
Confidence 3466789999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred EEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q psy11707 79 AGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN--LTDEEAHQLARKSIYHATYRDFASGGLIRGNA 155 (177)
Q Consensus 79 aG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~--~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~i 155 (177)
.|+|+ .||.+|.+||.|.++.+++++.|.....+..+||+.|+++ ++.+|++++++.||..++..|..+ .++||.+
T Consensus 141 i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~-se~EVgv 219 (246)
T KOG0182|consen 141 IGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKS-SELEVGV 219 (246)
T ss_pred EEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCC-cceEEEE
Confidence 99996 7899999999999999999999999999999999999987 789999999999999999988764 5799999
Q ss_pred EcCCceEEEEecCCCCC
Q psy11707 156 SGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 156 itkdg~~~~~l~~~~~~ 172 (177)
++++.-+++.|..+|++
T Consensus 220 v~~~~p~f~~Ls~~eie 236 (246)
T KOG0182|consen 220 VTVDNPEFRILSAEEIE 236 (246)
T ss_pred EEcCCcceeeccHHHHH
Confidence 99998778888877653
No 39
>KOG0177|consensus
Probab=100.00 E-value=1.7e-32 Score=200.72 Aligned_cols=161 Identities=25% Similarity=0.334 Sum_probs=153.1
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC--CCCceEEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK--GTGLSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~--~~P~~v~~lvaG 80 (177)
+..++.+|+++|++++.|+++|..+|+.++.+++...++.|++++|.+++|+.+|+.+++.+..+. ++||.|++|+||
T Consensus 27 ~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~~LvaG 106 (200)
T KOG0177|consen 27 VLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVNILVAG 106 (200)
T ss_pred EecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 356789999999999999999999999999999999999999999999999999999999998863 579999999999
Q ss_pred EeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 81 WDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 81 ~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
||+ .||.||++|-.|+..+.++.+.|.++.++.++|+++|+|+||.+||+++..+|+.++..|-...-.++.|.+|+||
T Consensus 107 Yd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkd 186 (200)
T KOG0177|consen 107 YDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKD 186 (200)
T ss_pred cCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCC
Confidence 997 6799999999999999999999999999999999999999999999999999999999998877788999999999
Q ss_pred ceEE
Q psy11707 160 WNQG 163 (177)
Q Consensus 160 g~~~ 163 (177)
|++.
T Consensus 187 Gir~ 190 (200)
T KOG0177|consen 187 GIRK 190 (200)
T ss_pred Ccee
Confidence 9874
No 40
>KOG0180|consensus
Probab=99.97 E-value=6.9e-31 Score=189.78 Aligned_cols=164 Identities=23% Similarity=0.207 Sum_probs=157.4
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEeC-
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDK- 83 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d~- 83 (177)
+.+.+|||+|+|++++|.+|++.|.+++.++++...+.|+++.++.+.|+.+++++|..+|+.|.-||.+..++||+|+
T Consensus 36 stdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~ 115 (204)
T KOG0180|consen 36 STDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDD 115 (204)
T ss_pred eccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCeEEEEcCCCceee-eceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 84 RGPQLYYVDSDGQRIK-GNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 84 ~gp~ly~id~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
++|+|...|..|.... .++++.|.+++.+.+.+|..|+|||..|++.+.+.++|..+.+||..+||...|.+|+||.+.
T Consensus 116 ~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 116 NKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred CCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 5699999999999986 599999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEecC
Q psy11707 163 GRFLGH 168 (177)
Q Consensus 163 ~~~l~~ 168 (177)
++.|+.
T Consensus 196 ~r~lK~ 201 (204)
T KOG0180|consen 196 KRTLKG 201 (204)
T ss_pred hhhhhh
Confidence 877764
No 41
>KOG0175|consensus
Probab=99.97 E-value=5.7e-31 Score=200.72 Aligned_cols=160 Identities=64% Similarity=1.078 Sum_probs=156.6
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
|++.+++||.+||++.+-..+|-+||+++.-+.+..+|..|++++++.++|...+++|+++++.|+...+.+...|+|||
T Consensus 97 Iasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~D 176 (285)
T KOG0175|consen 97 IASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWD 176 (285)
T ss_pred eechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeecc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
..||.||.||..|+-.+-+-.++|+|+.++.++|++.|++||+.+||.+|+++|+..+..||..+|+.+.++.|++||-.
T Consensus 177 k~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~ 256 (285)
T KOG0175|consen 177 KKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWV 256 (285)
T ss_pred CCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
No 42
>KOG0173|consensus
Probab=99.97 E-value=1.4e-30 Score=198.09 Aligned_cols=168 Identities=26% Similarity=0.397 Sum_probs=156.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
++..+.+||+.|.++|+||-+|.++|...+.+.+-++...|++..++.+.|-..-+++.+.++.|... .++.+|++|+|
T Consensus 63 vaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~-IgA~LiiGGvD 141 (271)
T KOG0173|consen 63 VADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGH-IGAALILGGVD 141 (271)
T ss_pred eecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCc-ccceeEEcccc
Confidence 56779999999999999999999999999999999999999999999999999999999999998877 89999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
..|||||.+.|.|+....+|.+.|+|+..+.+.||..|++||+.|||.+|+.+|+...+..|..||.++++|+|++.+.+
T Consensus 142 ~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~ 221 (271)
T KOG0173|consen 142 PTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVE 221 (271)
T ss_pred CCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976544
Q ss_pred EEEecCCCCCC
Q psy11707 163 GRFLGHQKGPN 173 (177)
Q Consensus 163 ~~~l~~~~~~~ 173 (177)
++.+-..||
T Consensus 222 --~lr~~~~~~ 230 (271)
T KOG0173|consen 222 --YLRNYSRPN 230 (271)
T ss_pred --ccccCCCCC
Confidence 555444444
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.95 E-value=1.7e-26 Score=172.16 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=121.4
Q ss_pred CCCCccCceEEe-cCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-CCCceEEEEEEE
Q psy11707 3 SSSGSMKKIVEI-NDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK-GTGLSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~-~~P~~v~~lvaG 80 (177)
|++++.+||++| +++++|++||..+|+|.+.++++.+++.|+. +. ++.+++.+..+ ..+. ++|+.+++|++
T Consensus 27 v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l-~~~~~~~~l~~~~lv~- 99 (172)
T PRK05456 27 VMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDW-RTDRYLRRLEAMLIVA- 99 (172)
T ss_pred EEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHH-HhccCCCccEEEEEEE-
Confidence 678899999999 9999999999999999999999999999882 21 46666555433 3333 36788999995
Q ss_pred EeCCCCeEEEEcCCCceeee--ceeEecCCcHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q psy11707 81 WDKRGPQLYYVDSDGQRIKG--NVFSVGSGSVFAFGVLDTGYH-WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNA 155 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~-~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~i 155 (177)
| .|+||.+|+.|+..+. ++.++|+|+.++.++||++|+ ++| ||++++++|++.+..||..+|++++|-.
T Consensus 100 -d--~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 100 -D--KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred -c--CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 3 3799999999999877 799999999999999999999 999 9999999999999999999999888754
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.95 E-value=2.5e-26 Score=170.30 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=119.2
Q ss_pred CCCCccCceEEecC-cEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCce-EEEEEEE
Q psy11707 3 SSSGSMKKIVEIND-YLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLS-MGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~-v~~lvaG 80 (177)
|++++.+||++|+| |++|+++|..+|++.+.++++.+++.|+.+.++ .+++.+. .+..++.+|+. +.+++++
T Consensus 26 v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~-~l~~~~~~~~l~a~~iv~~ 99 (171)
T cd01913 26 VMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAK-DWRTDRYLRRLEAMLIVAD 99 (171)
T ss_pred EEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHH-HHHhccCcCceEEEEEEeC
Confidence 67889999999999 999999999999999999999999999988763 4454433 33334445554 7777764
Q ss_pred EeCCCCeEEEEcCCCceeeec--eeEecCCcHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q psy11707 81 WDKRGPQLYYVDSDGQRIKGN--VFSVGSGSVFAFGVLDTGYHWN-LTDEEAHQLARKSIYHATYRDFASGGLIRGNA 155 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~~--~~a~G~gs~~~~~~Le~~~~~~-~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~i 155 (177)
+ ++||.+||.|...+++ +.++|+|++++.++||.+|+++ || +.+++.+|++.+.+||..+|++|+|-.
T Consensus 100 ~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 100 K----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred C----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 4 3999999999999984 9999999999999999999995 99 559999999999999999999888754
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.94 E-value=1.2e-25 Score=164.65 Aligned_cols=134 Identities=34% Similarity=0.429 Sum_probs=130.2
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC-CCceEEEEEEEEeC
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG-TGLSMGMMIAGWDK 83 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~-~P~~v~~lvaG~d~ 83 (177)
.....|+++++++++++++|..+|++.+.++++.+++.|++.++.++++..+++.+++.++.+++ +|+++++|++|+|+
T Consensus 28 ~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~ 107 (164)
T cd01901 28 GSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDE 107 (164)
T ss_pred CCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC
Confidence 56789999999999999999999999999999999999999999999999999999999999998 99999999999998
Q ss_pred CCCeEEEEcCCCceeee-ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q psy11707 84 RGPQLYYVDSDGQRIKG-NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIY 138 (177)
Q Consensus 84 ~gp~ly~id~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~ 138 (177)
++|+||.+||+|.+.++ +++++|.++..+.++|++.|+++|+.+++++++.+||.
T Consensus 108 ~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 108 GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 88999999999999999 99999999999999999999999999999999999985
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.94 E-value=1.4e-25 Score=166.37 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=118.8
Q ss_pred CCCCccCceEEe-cCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCC-ceEEEEEEE
Q psy11707 3 SSSGSMKKIVEI-NDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTG-LSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P-~~v~~lvaG 80 (177)
|++++.+||++| +||++|+++|..+|++.+.++++.+++.|+... .+.+++.++. ++.++.+| +.+.++++|
T Consensus 26 v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~-~~~~~~~~~l~a~~iv~~ 99 (171)
T TIGR03692 26 VMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKD-WRTDRYLRRLEAMLIVAD 99 (171)
T ss_pred EEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHH-HhhcccccccEEEEEEEc
Confidence 678899999999 599999999999999999999999999987643 3666777665 32333333 447777764
Q ss_pred EeCCCCeEEEEcCCCceeee--ceeEecCCcHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q psy11707 81 WDKRGPQLYYVDSDGQRIKG--NVFSVGSGSVFAFGVLDTGY-HWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNA 155 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~--~~~a~G~gs~~~~~~Le~~~-~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~i 155 (177)
| ++||.+||.|.+.++ ++.++|+||.++.++||..| +++|+ |++++.+++..+.+||..+|++++|-.
T Consensus 100 ~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 100 K----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred C----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 4 499999999999996 69999999999999999999 57777 999999999999999999999998764
No 47
>KOG0185|consensus
Probab=99.93 E-value=3.7e-25 Score=167.05 Aligned_cols=168 Identities=23% Similarity=0.270 Sum_probs=150.8
Q ss_pred CccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHhcCC--CCceEEEEEEEEe
Q psy11707 6 GSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYE-LRNGERISVAAASKLMCNMAYNYKG--TGLSMGMMIAGWD 82 (177)
Q Consensus 6 ~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~-~~~~~~~~~~~la~~i~~~~~~~~~--~P~~v~~lvaG~d 82 (177)
+++++|++|+||+.+|+||..+|+|.+.+.+.+...... +..+..+.|+.+.++|.+.+|..|. .|+...+++||+|
T Consensus 70 ~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~ 149 (256)
T KOG0185|consen 70 KNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVD 149 (256)
T ss_pred cCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeec
Confidence 478999999999999999999999999999988776643 5556899999999999999999875 6999999999999
Q ss_pred C-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC
Q psy11707 83 K-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH---WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ 158 (177)
Q Consensus 83 ~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~---~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk 158 (177)
. ..|.|-.+|..|..++.+..|+|.|..++.++|++.|. ++++.+||..++.+|++....||+.+..+++|++|++
T Consensus 150 ~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~ 229 (256)
T KOG0185|consen 150 NTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDE 229 (256)
T ss_pred CCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcc
Confidence 8 55999999999999999999999999999999999997 5899999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCC
Q psy11707 159 QWNQGRFLGHQKGPNS 174 (177)
Q Consensus 159 dg~~~~~l~~~~~~~~ 174 (177)
+|+.. .-|.+..-||
T Consensus 230 eGv~i-~~p~qv~~~W 244 (256)
T KOG0185|consen 230 EGVTI-SKPYQVKTNW 244 (256)
T ss_pred cceEe-cCceeeeecc
Confidence 98764 3444444444
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.2e-09 Score=77.70 Aligned_cols=140 Identities=18% Similarity=0.222 Sum_probs=98.7
Q ss_pred CCccCceEEecC-cEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEeC
Q psy11707 5 SGSMKKIVEIND-YLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDK 83 (177)
Q Consensus 5 ~~~~~ki~~i~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d~ 83 (177)
..+..|+.+|.+ ++..||+|.++|+.+|.+.+..+++.|. .+..-.+-.+++-+++-.+..+ +..-+|++
T Consensus 32 K~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~--g~L~raavelaKdwr~Dk~lr~---LEAmllVa---- 102 (178)
T COG5405 32 KGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ--GDLFRAAVELAKDWRTDKYLRK---LEAMLLVA---- 102 (178)
T ss_pred eccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc--CcHHHHHHHHHHhhhhhhHHHH---HhhheeEe----
Confidence 345555655555 8999999999999999999998888775 1111134445554443333322 55667777
Q ss_pred CCCeEEEEcCCCceeee--ceeEecCCcHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 84 RGPQLYYVDSDGQRIKG--NVFSVGSGSVFAFGVLDTGYH-WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 84 ~gp~ly~id~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~-~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
+.-+++-+...|...+. +..|+|+|..++.+.....+. +++|.+ +++.++|..+.+-+..+++++.|-.+
T Consensus 103 d~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~---eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 103 DKTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAR---EIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred CCCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHH---HHHHHHHhhhheEEEecCCcEEEEEe
Confidence 44689999999999975 689999999999998888775 366654 77888888887655555555555443
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9.3e-08 Score=71.84 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=115.3
Q ss_pred EEEEEcCChhhHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhc--CCC--------CceEEEEEEEEeCCC-
Q psy11707 18 LLGTLAGGAADCVYWDRVLAKQCRLYEL-RNGERISVAAASKLMCNMAYNY--KGT--------GLSMGMMIAGWDKRG- 85 (177)
Q Consensus 18 i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~~~~~~~la~~i~~~~~~~--~~~--------P~~v~~lvaG~d~~g- 85 (177)
++++.+|..|-.|.+++.+....+.... .-..-+++-..+..+.....+- +.+ -|.|++|++|.=.++
T Consensus 45 lvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~p 124 (255)
T COG3484 45 LVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEP 124 (255)
T ss_pred EEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCC
Confidence 5678999999999999999877752211 1122346666677777665542 112 489999999997654
Q ss_pred CeEEEEcCCCceeee----ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 86 PQLYYVDSDGQRIKG----NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 86 p~ly~id~~G~~~~~----~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
|.||.|-|-|++++- ++.-+|.. .+-+++|++.+.-+++++|+.++++-.+...+..+...|-.+++.++.+|..
T Consensus 125 p~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~ 203 (255)
T COG3484 125 PRLYLIYPQGNFIQATPETPFLQIGET-KYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSF 203 (255)
T ss_pred ceeEEEccCCCeeecCCCCceeEcccc-ccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccce
Confidence 899999999999974 88899854 5788999999999999999999999999999999998999999999999844
Q ss_pred E
Q psy11707 162 Q 162 (177)
Q Consensus 162 ~ 162 (177)
+
T Consensus 204 ~ 204 (255)
T COG3484 204 S 204 (255)
T ss_pred e
Confidence 3
No 50
>KOG3361|consensus
Probab=91.67 E-value=0.28 Score=34.84 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=39.9
Q ss_pred EEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHH
Q psy11707 89 YYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQL 132 (177)
Q Consensus 89 y~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l 132 (177)
..+|-+|.+...+|-..|.||..+.+.+-..|-..++.+|+.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 56888999999999999999999999999999999999998753
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=91.40 E-value=1 Score=34.06 Aligned_cols=50 Identities=6% Similarity=-0.041 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 110 VFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 110 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
+.+...|.++|++.|+.+++..+..++|..+....+..+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 56778899999999999999999999999998777777788998888765
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.10 E-value=9.1 Score=30.26 Aligned_cols=50 Identities=6% Similarity=-0.132 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 110 VFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 110 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
+.+..+|.+.|.+.++++++..+..++|..+..--+..+.++++..+++.
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 45668899999999999999999999999998666666788888888764
No 53
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=74.06 E-value=5.7 Score=30.23 Aligned_cols=47 Identities=9% Similarity=-0.134 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEecCCCCCCC
Q psy11707 128 EAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGHQKGPNS 174 (177)
Q Consensus 128 ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~~~~~~~~ 174 (177)
|++...++.|...+..|...-..+++.|||-+|.-++..|.-++-||
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF 68 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANF 68 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhc
Confidence 56677777777777788877788999999999877777776655554
No 54
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=72.87 E-value=21 Score=25.80 Aligned_cols=44 Identities=11% Similarity=-0.075 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEecC
Q psy11707 121 HWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGH 168 (177)
Q Consensus 121 ~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~~ 168 (177)
.+.++.+.|.+++..++.++-. .++.+.+.+++..|....+...
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~----~g~~VtvaVVD~~G~~~a~~Rm 48 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQ----LGVPVTVAVVDAGGHLVALERM 48 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHH----hCCceEEEEECCCCCEEEEEec
Confidence 4578999999999999998775 3789999999999877655543
No 55
>PRK09732 hypothetical protein; Provisional
Probab=70.27 E-value=26 Score=25.07 Aligned_cols=45 Identities=7% Similarity=-0.118 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEecCCC
Q psy11707 122 WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGHQK 170 (177)
Q Consensus 122 ~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~~~~ 170 (177)
+.||++.|.+++..++..+... +..+.|++++..|....+..-|.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~~RmDg 49 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLALSRMDD 49 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEEEEcCC
Confidence 4689999999999999988863 67899999999998877766554
No 56
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=60.70 E-value=4.9 Score=23.08 Aligned_cols=33 Identities=21% Similarity=0.034 Sum_probs=24.2
Q ss_pred EecCCcHHHHHHHHhcC-CCCCCHHHHHHHHHHH
Q psy11707 104 SVGSGSVFAFGVLDTGY-HWNLTDEEAHQLARKS 136 (177)
Q Consensus 104 a~G~gs~~~~~~Le~~~-~~~~s~~ea~~l~~~~ 136 (177)
+.|.....+...+.+.. .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 45778888888888777 8899999888777653
No 57
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=53.27 E-value=27 Score=23.02 Aligned_cols=50 Identities=14% Similarity=-0.012 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEecCCCCCCCCC
Q psy11707 121 HWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGHQKGPNSGR 176 (177)
Q Consensus 121 ~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~~~~~~~~~~ 176 (177)
...|+..|.+++.++=++.. .+..++-+..+...| ..+.|+.+|.|=+-|
T Consensus 20 sS~~tt~eVI~~LL~KFkv~-----~~p~~FALy~vh~~G-e~rkL~d~E~PL~~R 69 (87)
T cd01784 20 NSTMTTPQVLKLLLNKFKIE-----NSAEEFALYIVHTSG-EKRKLKATDYPLIAR 69 (87)
T ss_pred ecCCCHHHHHHHHHHhcccc-----CCHHHeEEEEEeeCC-CEEECCCcCCCeehh
Confidence 45788888888888877644 234567788888777 568899999997655
No 58
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=50.54 E-value=40 Score=23.60 Aligned_cols=41 Identities=22% Similarity=0.117 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEec
Q psy11707 123 NLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLG 167 (177)
Q Consensus 123 ~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~ 167 (177)
.+|.++|.+++..++..+.++ +..+-|+|++..|...-+..
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~~~r 42 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLLAFAR 42 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EEEEEE
T ss_pred CcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEEEEEe
Confidence 468999999999999999873 55688999999886654443
No 59
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=48.27 E-value=35 Score=21.79 Aligned_cols=46 Identities=13% Similarity=-0.026 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEecCCCCC
Q psy11707 122 WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 122 ~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~~~~~~ 172 (177)
+..|..|.+..+++-+.. .. ....+.++.+...+...+.|+.+|.|
T Consensus 25 ~~tTa~evi~~~l~k~~l--~~---~~~~y~L~~~~~~~~~er~L~~~E~p 70 (93)
T PF00788_consen 25 SSTTAREVIEMALEKFGL--AE---DPSDYCLVEVEESGGEERPLDDDECP 70 (93)
T ss_dssp TTSBHHHHHHHHHHHTTT--SS---SGGGEEEEEEECTTTEEEEETTTSBH
T ss_pred CCCCHHHHHHHHHHHhCC--CC---CCCCEEEEEEEcCCCEEEEcCCCCch
Confidence 466888888888887764 22 23457776455555567789888876
No 60
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=41.54 E-value=1.1e+02 Score=21.14 Aligned_cols=51 Identities=10% Similarity=-0.059 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEecCCCCCCC
Q psy11707 121 HWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGHQKGPNS 174 (177)
Q Consensus 121 ~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~~~~~~~~ 174 (177)
...|+..|.+++.++-++.=.. ..+..++-+..+...| ..+.|+.+|.|=.
T Consensus 43 sS~~tt~eVI~~LLeKFk~d~~--~~s~p~FALYevh~nG-e~RKL~d~E~PL~ 93 (112)
T cd01782 43 SSTATTRDVIDTLSEKFRPDMR--MLSNPTYSLYEVHENG-EERRLLDDEKPLV 93 (112)
T ss_pred ecCCCHHHHHHHHHHHhccccc--ccCCcceEEEEEecCC-ceEEcCCcCCCeE
Confidence 3467888887777776652110 2234578888888876 4678999998844
No 61
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=37.76 E-value=43 Score=17.94 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=12.9
Q ss_pred eCCCCeEEEEcCCCceeeeceeEec
Q psy11707 82 DKRGPQLYYVDSDGQRIKGNVFSVG 106 (177)
Q Consensus 82 d~~gp~ly~id~~G~~~~~~~~a~G 106 (177)
|..|--+=.+||.|....|.+-+.|
T Consensus 2 D~~G~l~~~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 2 DANGRLTSVTDPDGRTTRYTYDAAG 26 (38)
T ss_pred CCCCCEEEEEcCCCCEEEEEECCCC
Confidence 3334444455666666655555444
No 62
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=37.68 E-value=40 Score=17.37 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=16.8
Q ss_pred EEEEEEEeCCCCeEEEEcCCCc
Q psy11707 75 GMMIAGWDKRGPQLYYVDSDGQ 96 (177)
Q Consensus 75 ~~lvaG~d~~gp~ly~id~~G~ 96 (177)
+..+.|.-++.|.||.|-.+|.
T Consensus 5 ~~~v~G~rPg~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARPGSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccCCCcEEEEeeccCc
Confidence 3456677777899999988875
No 63
>KOG3652|consensus
Probab=37.23 E-value=82 Score=28.88 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=68.6
Q ss_pred EcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEeCCCCeEEEEcCCCceeeec
Q psy11707 22 LAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGN 101 (177)
Q Consensus 22 ~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d~~gp~ly~id~~G~~~~~~ 101 (177)
-+|.++-+-.+++.+- ....|+++....|.+..+-.+|.....-|.|-.+++.+--+||-||..|-.|--.-.+
T Consensus 192 eAGRAaAc~sLcRIfc------SKksgEeIl~a~LS~FY~ll~Q~Lq~kdyvchpmLasl~ln~p~LFccdLkGId~llP 265 (1215)
T KOG3652|consen 192 EAGRAAACASLCRIFC------SKKSGEEILNAQLSNFYALLFQCLQEKDYVCHPMLASLFLNGPNLFCCDLKGIDSLLP 265 (1215)
T ss_pred hhhHHHHHHHHHHhhh------cccCcccccHHHHHHHHHHHHHHHhhcccccchhheeeeecCCceeeecCCchhHhhH
Confidence 3455555555544332 3467788999999998888777655555667777777766899999999988643222
Q ss_pred eeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q psy11707 102 VFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHAT 141 (177)
Q Consensus 102 ~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 141 (177)
+.-.---.......+-+.++.-.+..|.....+++|..++
T Consensus 266 ~Fi~ALd~il~dre~~rkfkS~~n~tElRRa~in~LlSli 305 (1215)
T KOG3652|consen 266 HFIFALDIILIDREKLRKFKSISNETELRRACINALLSLI 305 (1215)
T ss_pred HHHHHHHhhhccHHHhhhccccCCHHHHHHHHHHHHHHhc
Confidence 2111001111111111223333457788888888887765
No 64
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=37.21 E-value=66 Score=25.77 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=33.7
Q ss_pred EEEEEEEeCCCCeEEEEcCCCceeee---ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHH
Q psy11707 75 GMMIAGWDKRGPQLYYVDSDGQRIKG---NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARK 135 (177)
Q Consensus 75 ~~lvaG~d~~gp~ly~id~~G~~~~~---~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~ 135 (177)
-+=++|.|. .+..+|..|....+ +.||.|+|+ ++....... +++.+|.-.++.+
T Consensus 101 IiDIGGQD~---K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~L---~i~leel~~~a~~ 157 (262)
T TIGR02261 101 VLDIGALHG---RAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARYL---GIAQDEIGSLSQQ 157 (262)
T ss_pred EEEeCCCce---EEEEEcCCCcEeeEEecCcccccccH-HHHHHHHHh---CCCHHHHHHHHhc
Confidence 344677764 58888999998875 788889887 444433322 4555554444433
No 65
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=36.09 E-value=66 Score=18.60 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=23.4
Q ss_pred EEEcCCCceeeeceeEecCCcHHHHHHHHhc
Q psy11707 89 YYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG 119 (177)
Q Consensus 89 y~id~~G~~~~~~~~a~G~gs~~~~~~Le~~ 119 (177)
|.|+|+|.....--...|.....+...||..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~ 33 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEA 33 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHH
Confidence 6789999988776667777777777766654
No 66
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=35.70 E-value=73 Score=19.71 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy11707 33 DRVLAKQCRLYELRNGERISVAAASKLMCNM 63 (177)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~ 63 (177)
++.++..........|+.+|.+.+|..+.--
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis 33 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGIS 33 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHccc
Confidence 3445555566677889999999999877533
No 67
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=35.37 E-value=1.2e+02 Score=19.23 Aligned_cols=46 Identities=13% Similarity=-0.104 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEecCCCCC
Q psy11707 122 WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 122 ~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~~~~~~ 172 (177)
++.|..+.+..+++-+.... ....+.+..+..++...+.|..+|.|
T Consensus 21 ~~~t~~~Vi~~~l~k~~l~~-----~~~~y~L~ev~~~~~~er~L~~~e~p 66 (87)
T cd01768 21 KDTTAQDVIQQLLKKFGLDD-----DPEDYALVEVLGDGGLERLLLPDECP 66 (87)
T ss_pred CCCCHHHHHHHHHHHhCCcC-----CcccEEEEEEECCceEEEEeCCCCCh
Confidence 45677777777766554221 34567888888776788899999988
No 68
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=35.08 E-value=1.1e+02 Score=21.15 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy11707 26 AADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63 (177)
Q Consensus 26 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~ 63 (177)
+.|--.+++++|. |...++..++++.+++.+...
T Consensus 40 T~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~ 73 (109)
T PRK11508 40 SPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANK 73 (109)
T ss_pred CHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHH
Confidence 3444456666654 556678889999999987653
No 69
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.67 E-value=80 Score=18.94 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccC
Q psy11707 112 AFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDF 145 (177)
Q Consensus 112 ~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~ 145 (177)
+-.-+.+...+.||--||+.++.+.|+.-...+.
T Consensus 16 AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 16 AVERIQELMAEGMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHHhcccc
Confidence 3344555566789999999999999998876554
No 70
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=33.15 E-value=56 Score=17.54 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=4.3
Q ss_pred EEcCCCceeee
Q psy11707 90 YVDSDGQRIKG 100 (177)
Q Consensus 90 ~id~~G~~~~~ 100 (177)
.+||.|....+
T Consensus 10 ~~~p~G~~~~~ 20 (42)
T TIGR01643 10 STDADGTTTRY 20 (42)
T ss_pred EECCCCCEEEE
Confidence 33444433333
No 71
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=32.13 E-value=1.8e+02 Score=23.28 Aligned_cols=59 Identities=14% Similarity=-0.088 Sum_probs=41.0
Q ss_pred ceeEecCCcHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 101 NVFSVGSGSVFAFGVLDTG----YHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 101 ~~~a~G~gs~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
-..++|.|..+++..+-.. .+..++.++|.+.+++-+..... ..++..-+..|+++|..
T Consensus 186 a~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 186 AAAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCE
Confidence 3568999999888766544 23578999998888776654432 23455678888888754
No 72
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=31.85 E-value=1e+02 Score=25.11 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=33.7
Q ss_pred EEEEEEEEeCCCCeEEEEcCCCceeee---ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHH
Q psy11707 74 MGMMIAGWDKRGPQLYYVDSDGQRIKG---NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLA 133 (177)
Q Consensus 74 v~~lvaG~d~~gp~ly~id~~G~~~~~---~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~ 133 (177)
.-+=++|.|. .+..+|..|....+ .-||.|+|+ ++....+.. +++.+|.-+++
T Consensus 128 tIIDIGGQDs---K~I~~d~~G~v~dF~MNdkCAAGTGr-FLE~~A~~L---gi~leel~~~a 183 (293)
T TIGR03192 128 TILDMGGQDC---KAIHCDEKGKVTNFLMNDKCAAGTGR-GMEVISDLM---QIPIADLGPRS 183 (293)
T ss_pred EEEEeCCCce---EEEEEcCCCcEeeeeecCcccccccH-HHHHHHHHc---CCCHHHHHHHH
Confidence 3444677764 57888999987765 778888887 444433332 45666554443
No 73
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=31.22 E-value=1.7e+02 Score=21.25 Aligned_cols=54 Identities=22% Similarity=0.157 Sum_probs=41.7
Q ss_pred eEEE-EcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q psy11707 87 QLYY-VDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHAT 141 (177)
Q Consensus 87 ~ly~-id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 141 (177)
.||. +| .|......|-+.|.+...+.+-+-..+-...|.+||.++.........
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4444 55 777778899999999988888888778889999999999844444333
No 74
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=30.74 E-value=1.3e+02 Score=20.89 Aligned_cols=54 Identities=20% Similarity=0.131 Sum_probs=40.1
Q ss_pred EEEcCC-CceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q psy11707 89 YYVDSD-GQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATY 142 (177)
Q Consensus 89 y~id~~-G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 142 (177)
..+|.. |....-+|.+.|.....+.+-+=-.+-.+++.+||.++..+-+...+.
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 457887 777788999999777666665555555688999998887776666654
No 75
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=29.95 E-value=83 Score=18.48 Aligned_cols=28 Identities=21% Similarity=0.011 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC
Q psy11707 124 LTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ 158 (177)
Q Consensus 124 ~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk 158 (177)
-|.+||+..|.+-|.... ..+++-++.+
T Consensus 5 kt~eeAi~~A~~~l~~~~-------~~~~~eVi~~ 32 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPR-------EELEYEVIEE 32 (52)
T ss_dssp SSHHHHHHHHHHHTT--G-------GGEEEEEEE-
T ss_pred CCHHHHHHHHHHHhCCCh-------HHEEEEEEEc
Confidence 478999999988776443 4688888876
No 76
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=29.95 E-value=2.4e+02 Score=21.17 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEeCCCCeEEEEcCCCceeeeceeEecCCcHH
Q psy11707 32 WDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVF 111 (177)
Q Consensus 32 l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~ 111 (177)
|++..|.--..-+...+.+++.+.+|..+++++.. -+|-++..|....+... .+.....
T Consensus 2 LLeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~a--------------------NvyIis~kGkiLGy~~~-~~~~~~~ 60 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLEA--------------------NVYIISRKGKILGYSFI-DDFECDR 60 (177)
T ss_dssp HHHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHTS--------------------EEEEEETTSBEEEEE-S-S----HH
T ss_pred hHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhcC--------------------cEEEEeCCccEEEEecc-CCCCcHH
Confidence 44555544444444577899999999999998744 47778888888877555 4445566
Q ss_pred HHHHHHhcC
Q psy11707 112 AFGVLDTGY 120 (177)
Q Consensus 112 ~~~~Le~~~ 120 (177)
...+++...
T Consensus 61 ~~~~~~~~~ 69 (177)
T PF06018_consen 61 MEEMLEEKR 69 (177)
T ss_dssp HHHHHHHTB
T ss_pred HHHHHhcCc
Confidence 666666554
No 77
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.88 E-value=1.6e+02 Score=19.39 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy11707 110 VFAFGVLDTGYHWNLTDEEAHQLARKSIYHA 140 (177)
Q Consensus 110 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~ 140 (177)
..+..+|++.-.+++|+++++++=.+++...
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL 62 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQEL 62 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4567888888889999998887766665544
No 78
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=29.10 E-value=1.1e+02 Score=20.92 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=28.5
Q ss_pred cCChhhHHHHHHHHHHHHHHH--HHhc-C---C----CCCHHHHHHHHHHHHHhcC
Q psy11707 23 AGGAADCVYWDRVLAKQCRLY--ELRN-G---E----RISVAAASKLMCNMAYNYK 68 (177)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~~~--~~~~-~---~----~~~~~~la~~i~~~~~~~~ 68 (177)
.|..-|+..+.+.++.....+ ++.+ . . .+|++.+|.+|.+.+...-
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 477778888888877644433 2222 1 1 1799999999999887754
No 79
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=28.76 E-value=57 Score=22.22 Aligned_cols=16 Identities=44% Similarity=0.899 Sum_probs=13.7
Q ss_pred CCCeEEEEcCCCceee
Q psy11707 84 RGPQLYYVDSDGQRIK 99 (177)
Q Consensus 84 ~gp~ly~id~~G~~~~ 99 (177)
++|+||.+||.+....
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 5799999999988654
No 80
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=28.14 E-value=1.1e+02 Score=26.31 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=31.6
Q ss_pred EEEEEEeCCCCeEEEEcCCCceeee---ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHH
Q psy11707 76 MMIAGWDKRGPQLYYVDSDGQRIKG---NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLA 133 (177)
Q Consensus 76 ~lvaG~d~~gp~ly~id~~G~~~~~---~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~ 133 (177)
+=++|.|. ....+|..|....+ .-||.|+|+ ++....... +++.+|.-+++
T Consensus 272 IDIGGQDs---K~I~ld~~G~V~dF~MNDKCAAGTGr-FLE~mA~~L---gi~leEl~~lA 325 (432)
T TIGR02259 272 LDIGGQDT---KGIQIDDHGIVENFQMNDRCAAGCGR-YLGYIADEM---NMGLHELGPLA 325 (432)
T ss_pred EEeCCCce---EEEEEcCCCcEeeeeecCcccccchH-HHHHHHHHc---CCCHHHHHHHH
Confidence 33566654 58889999987754 778888887 444433332 44555444433
No 81
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=28.02 E-value=57 Score=24.87 Aligned_cols=33 Identities=6% Similarity=0.160 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 50 RISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 50 ~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
.-||+.+|.-++++++.|+++-=.-.++++||.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRVVLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceEEEEeec
Confidence 458899999999999998765223456788887
No 82
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=27.64 E-value=1.7e+02 Score=20.08 Aligned_cols=35 Identities=11% Similarity=-0.090 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy11707 26 AADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64 (177)
Q Consensus 26 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~ 64 (177)
+.+--.+++++|. |...++..++++.+++.+...+
T Consensus 39 T~~Hw~vI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 73 (108)
T TIGR03342 39 TEAHWEVINFLRD----FYAEYNISPAVRMLVKAMGKKL 73 (108)
T ss_pred CHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 3444456666654 5566788899999998887543
No 83
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=27.41 E-value=2.2e+02 Score=23.08 Aligned_cols=57 Identities=18% Similarity=0.087 Sum_probs=37.0
Q ss_pred EEEEEEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHH---HhcCCCCCCHHHHHHHH
Q psy11707 75 GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVL---DTGYHWNLTDEEAHQLA 133 (177)
Q Consensus 75 ~~lvaG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~L---e~~~~~~~s~~ea~~l~ 133 (177)
.+|.+|+ -|+-+=..-|+|.+.-.--.-.=+.+.+....| +..--..||+++|++.+
T Consensus 98 ~FImaGy--Lg~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~sv 157 (314)
T PF05113_consen 98 DFIMAGY--LGAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSV 157 (314)
T ss_pred cEEeecc--cCCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHh
Confidence 4788888 454444455889888554444446777777777 43334578888887654
No 84
>PRK11325 scaffold protein; Provisional
Probab=27.28 E-value=1.7e+02 Score=20.47 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=38.7
Q ss_pred EEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy11707 90 YVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHA 140 (177)
Q Consensus 90 ~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~ 140 (177)
.+|+.|...+..|.+.|.....+.+.+=..+-...+++||..+.-+.+...
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~~ 96 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEE 96 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHH
Confidence 455578888889999998877777766666667889999988877655443
No 85
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=27.15 E-value=1e+02 Score=19.90 Aligned_cols=36 Identities=28% Similarity=0.160 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 122 WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 122 ~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
..+|.+||...++++|..... ++.--+++++.+|+.
T Consensus 33 g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~ 68 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVV 68 (95)
T ss_dssp T-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBE
T ss_pred CCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeE
Confidence 469999999999999987654 223358888888864
No 86
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=27.10 E-value=81 Score=26.55 Aligned_cols=58 Identities=19% Similarity=0.043 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEecC
Q psy11707 111 FAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGH 168 (177)
Q Consensus 111 ~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l~~ 168 (177)
....+|.+.|...+..+-.....+..+..+.-+.....|.++|.+|...+...+||..
T Consensus 336 sltdyirsgwv~gl~~etvkq~~iNG~~Aata~a~A~~w~fdvaVI~~g~rvyrflta 393 (479)
T COG4784 336 SLTDYIRSGWVAGLDPETVKQTTINGLEAATARASADRWQFDVAVIRAGDRVYRFLTA 393 (479)
T ss_pred CHHHHHHHhhhccCChhhhhhhccCCchhcccCCCcccccceEEEEEeCCEEEEEEEe
Confidence 4457888899888888888888899999888888888899999999988777777754
No 87
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=26.98 E-value=1.3e+02 Score=18.39 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=13.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHH
Q psy11707 41 RLYELRNGERISVAAASKLMC 61 (177)
Q Consensus 41 ~~~~~~~~~~~~~~~la~~i~ 61 (177)
..|...+|.+||+..+++.+.
T Consensus 16 ~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 16 REYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHhC
Confidence 455667899999999988764
No 88
>KOG1523|consensus
Probab=26.82 E-value=2.8e+02 Score=23.16 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=31.6
Q ss_pred EEEEEEEEeCCCCeEEEEcCCCceeeece--eEecCCcHHHHHHHHhcCC
Q psy11707 74 MGMMIAGWDKRGPQLYYVDSDGQRIKGNV--FSVGSGSVFAFGVLDTGYH 121 (177)
Q Consensus 74 v~~lvaG~d~~gp~ly~id~~G~~~~~~~--~a~G~gs~~~~~~Le~~~~ 121 (177)
-+++.||+|. +|.||..|..|....... ...++++....+.+++...
T Consensus 261 ~~vv~ag~~c-~P~lf~~~~~~~l~~~~~ld~p~~s~s~~lt~a~~kF~~ 309 (361)
T KOG1523|consen 261 NSVVAAGYDC-GPVLFVTDEEGGLSFARRLDAPKASSSSPLTSAWRKFLG 309 (361)
T ss_pred CceeecCCCC-CceEEEeccccceeeehhcCCccccCCchhHHHHHHHhc
Confidence 3567889875 699999999996665422 3444555556656666553
No 89
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=26.20 E-value=2.4e+02 Score=22.41 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=38.5
Q ss_pred ceeEecCCcHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 101 NVFSVGSGSVFAFGVLDTG----YHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 101 ~~~a~G~gs~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
-..++|.|..+++..+-.. .+..++.++|.+.+++-+... .++..-+..++++|.
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~ 233 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGE 233 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCC
Confidence 4668999999988776644 245789999888777766533 233455778888864
No 90
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.60 E-value=68 Score=21.91 Aligned_cols=29 Identities=24% Similarity=0.116 Sum_probs=24.7
Q ss_pred ceEEecCcEEEEEcCChhhHHHHHHHHHH
Q psy11707 10 KIVEINDYLLGTLAGGAADCVYWDRVLAK 38 (177)
Q Consensus 10 ki~~i~~~i~~~~sG~~aD~~~l~~~~~~ 38 (177)
-+++|-++.++.+.|..+|+....+.++.
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~ 37 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAER 37 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHH
Confidence 36899999999999999999888777654
No 91
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=25.33 E-value=74 Score=27.59 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=42.9
Q ss_pred EEEEEEEEeCCCCeEEEEcCCCcee---eeceeEecCCcHHHHHHHHhc---CCCCCCHHHHHHHHHHHH
Q psy11707 74 MGMMIAGWDKRGPQLYYVDSDGQRI---KGNVFSVGSGSVFAFGVLDTG---YHWNLTDEEAHQLARKSI 137 (177)
Q Consensus 74 v~~lvaG~d~~gp~ly~id~~G~~~---~~~~~a~G~gs~~~~~~Le~~---~~~~~s~~ea~~l~~~~l 137 (177)
+-+|++|.|.++. +++-.... .-...++|.....+...|++. +...-++++|+..+.+..
T Consensus 346 v~lI~GG~~Kg~d----f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a 411 (448)
T COG0771 346 VILIAGGDDKGAD----FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELA 411 (448)
T ss_pred EEEEECCCCCCCC----hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhh
Confidence 7788888886443 33333333 335789999999999999877 556678888888877744
No 92
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=25.30 E-value=2.4e+02 Score=22.60 Aligned_cols=55 Identities=16% Similarity=0.015 Sum_probs=37.9
Q ss_pred ceeEecCCcHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 101 NVFSVGSGSVFAFGVLDTG----YHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 101 ~~~a~G~gs~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
-..++|.|..+++..+-.. .+..++.+||.+.+++-+.... ++..-+..|+++|.
T Consensus 178 a~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 236 (261)
T cd04702 178 AVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGE 236 (261)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCC
Confidence 4679999999988776654 3457899999888887665432 22344666777764
No 93
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=25.05 E-value=66 Score=26.13 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=44.2
Q ss_pred EEEEeC-CC-CeEEEEcCCCceeeeceeEecCC-cHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHhccCCCCCcEEE
Q psy11707 78 IAGWDK-RG-PQLYYVDSDGQRIKGNVFSVGSG-SVFAFGVLDTGYHW-NLTDEEAHQLARKSIYHATYRDFASGGLIRG 153 (177)
Q Consensus 78 vaG~d~-~g-p~ly~id~~G~~~~~~~~a~G~g-s~~~~~~Le~~~~~-~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev 153 (177)
+.|.|+ .| +-....-..|-|.+. ..|.. -....+-|-+.|.+ ++|+|+|++|... -..+..+..+|..|.+
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsL--PR~iG~hp~sge~I~a 151 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSL--PRVIGKHPDSGEEISA 151 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcC--chhhCCCCCCCcEEEe
Confidence 456775 44 445556666666544 45655 56666778788875 8999999887643 3344445556655543
No 94
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=24.08 E-value=1e+02 Score=16.96 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=17.6
Q ss_pred EecCCcHHHHHHHHhcCCCCCCHHHHHHH
Q psy11707 104 SVGSGSVFAFGVLDTGYHWNLTDEEAHQL 132 (177)
Q Consensus 104 a~G~gs~~~~~~Le~~~~~~~s~~ea~~l 132 (177)
.+|.....+..+|+.. +.+++.|+..
T Consensus 10 iTg~~~~~A~~~L~~~---~wdle~Av~~ 35 (43)
T PF14555_consen 10 ITGADEDVAIQYLEAN---NWDLEAAVNA 35 (43)
T ss_dssp HH-SSHHHHHHHHHHT---TT-HHHHHHH
T ss_pred HHCcCHHHHHHHHHHc---CCCHHHHHHH
Confidence 3577778889999876 5677777654
No 95
>PF03989 DNA_gyraseA_C: DNA gyrase C-terminal domain, beta-propeller; InterPro: IPR006691 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents the beta-pinwheel repeat found at the C-terminal end of subunit A of topoisomerase IV (ParC) and subunit A of DNA gyrase (GyrA). DNA gyrase is the topoisomerase II found primarily in bacteria and archaea that consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. This is distinct from the topoisomerase II found in most eukaryotes, which consists of a single polypeptide, with the N- and C-terminal regions corresponding to gyrB and gyrA, respectively, and which is not represented in this entry. The ability of DNA gyrase to introduce negative supercoils into DNA is mediated in part by the C-terminal domain of subunit A, which forms a beta-pinwheel fold that is similar to a beta-propeller but with a different blade topology, and which forms a superhelical spiral domain [, ]. This beta-pinwheel is capable of bending DNA by over 180 degrees over a 40 bp region, possibly by wrapping the DNA around the GyrA C-terminal beta-pinwheel domain. In topoisomerase IV, although the C-terminal domain forms a similar superhelical spiral to that of DNA gyrase A, it assembles as a broken form of a beta-pinwheel as distinct from that of gyrA, due to the absence of a DNA gyrase-specific GyrA box motif []. This difference may account for parC being less efficient than gyrA in mediating DNA-bending, leading to their divergence in terms of activity, where topoisomerase IV acts to relax positive supercoils, and DNA gyrase acts to introduce negative supercoils []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3L6V_A 3UC1_A 1ZI0_B 1SUU_A 1ZVU_A 1ZVT_B 3NO0_B.
Probab=23.51 E-value=78 Score=17.59 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=16.7
Q ss_pred EEEEEcCCceEEEEecCCCCCCCCC
Q psy11707 152 RGNASGQQWNQGRFLGHQKGPNSGR 176 (177)
Q Consensus 152 ev~iitkdg~~~~~l~~~~~~~~~~ 176 (177)
+|..+|..| ....++-.++|...|
T Consensus 2 ~il~~T~~G-~~~r~~~~~i~~~~r 25 (48)
T PF03989_consen 2 EILLITSNG-YVKRIPLSEIPEQGR 25 (48)
T ss_dssp EEEEEETTS-EEEEEEGGGSHBCST
T ss_pred EEEEEeCCC-eEEEeeecccccccc
Confidence 477888877 445677777777665
No 96
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.43 E-value=1.2e+02 Score=23.01 Aligned_cols=35 Identities=20% Similarity=0.099 Sum_probs=27.9
Q ss_pred eEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q psy11707 103 FSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSI 137 (177)
Q Consensus 103 ~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l 137 (177)
.+.|.....+...+++...++++.++.++.|++.|
T Consensus 151 ~~LGy~~~ea~~av~~~~~~~~~~e~lik~ALk~l 185 (188)
T PRK14606 151 VSLGYPEKQAREAVKHVYREGMKTSELIKEALKFL 185 (188)
T ss_pred HHcCCCHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 36788888888888877656888988888887766
No 97
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.98 E-value=62 Score=21.45 Aligned_cols=16 Identities=44% Similarity=0.779 Sum_probs=12.6
Q ss_pred CCCeEEEEcCCCceee
Q psy11707 84 RGPQLYYVDSDGQRIK 99 (177)
Q Consensus 84 ~gp~ly~id~~G~~~~ 99 (177)
++|+|+.+||.-...+
T Consensus 24 d~PrL~yvdp~~~~~K 39 (89)
T cd01262 24 NGPRLIYVDPVKKVVK 39 (89)
T ss_pred cCceEEEEcCCcCeEE
Confidence 6899999999854443
No 98
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=22.29 E-value=2.2e+02 Score=19.36 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCCHHHHH
Q psy11707 30 VYWDRVLAKQCRLYELRNGE-RISVAAAS 57 (177)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~-~~~~~~la 57 (177)
..++..+..+++.|++.+++ +++.+.|-
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L~ 78 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDLK 78 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 34667888889999999887 77766553
No 99
>KOG3984|consensus
Probab=22.19 E-value=47 Score=26.35 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=12.1
Q ss_pred EEEecCCCCCCCCCC
Q psy11707 163 GRFLGHQKGPNSGRS 177 (177)
Q Consensus 163 ~~~l~~~~~~~~~~~ 177 (177)
.+.+|.+++||||+|
T Consensus 45 p~i~pYedIP~Fp~s 59 (286)
T KOG3984|consen 45 PVIVPYEDIPNFPVS 59 (286)
T ss_pred CEEecHhhCCCCCcc
Confidence 356899999999876
No 100
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=21.04 E-value=2.5e+02 Score=23.10 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=33.7
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcCC-CC--ceEEEEEEEEeCCCCeEEEEcCCCcee-eece
Q psy11707 43 YELRNGERISVAAASKLMCNMAYNYKG-TG--LSMGMMIAGWDKRGPQLYYVDSDGQRI-KGNV 102 (177)
Q Consensus 43 ~~~~~~~~~~~~~la~~i~~~~~~~~~-~P--~~v~~lvaG~d~~gp~ly~id~~G~~~-~~~~ 102 (177)
..+..+..++++.+..-+.+++..... .| -|+++.|. +-|.+-++|.++ +|++
T Consensus 256 ~~L~kd~sit~~~mi~cc~rLl~~~~~~~~~l~g~~l~Is-------~~ysv~~DG~icIPwdw 312 (313)
T PF14688_consen 256 RSLTKDPSITPDQMISCCRRLLEQSEELLPYLQGLSLCIS-------HYYSVLQDGDICIPWDW 312 (313)
T ss_pred hhcccCCCCCHHHHHHHHHHHHhcccccccccCCCEEEEc-------CccccCCCCcEEecCCC
Confidence 345556678888888888777775431 23 35666555 346677888775 5654
No 101
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=20.57 E-value=94 Score=21.68 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=5.6
Q ss_pred CHHHHHHHHHHHHH
Q psy11707 125 TDEEAHQLARKSIY 138 (177)
Q Consensus 125 s~~ea~~l~~~~l~ 138 (177)
+..|.++++.+.++
T Consensus 44 s~~ELi~~ale~iy 57 (116)
T PF07104_consen 44 SNTELIELALEMIY 57 (116)
T ss_pred CHHHHHHHHHHHHH
Confidence 33444444444333
No 102
>KOG3087|consensus
Probab=20.08 E-value=3.6e+02 Score=21.02 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHHHhccC
Q psy11707 85 GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTD---EEAHQLARKSIYHATYRDF 145 (177)
Q Consensus 85 gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~---~ea~~l~~~~l~~~~~~d~ 145 (177)
-|.||.+|+.+...---+. .|+..+..++-+...+.-+. .+....+-+.+....+.|.
T Consensus 74 ~P~l~~~D~~~~~i~ME~~---~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndi 134 (229)
T KOG3087|consen 74 APRLIFIDTYGGQIYMEFI---DGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDI 134 (229)
T ss_pred CceEEEEecCCCeEEEEec---cchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCe
Confidence 4999999999987754333 34455555555554433222 2333444445555555554
Done!