Query psy11707
Match_columns 177
No_of_seqs 118 out of 1047
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 16:52:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_H 20S proteasome; cell cy 100.0 5.8E-43 2E-47 267.4 20.6 171 3-174 26-197 (205)
2 1j2q_H Proteasome beta subunit 100.0 1.3E-42 4.3E-47 265.0 18.8 168 3-172 26-194 (202)
3 1iru_L 20S proteasome; cell cy 100.0 3.7E-42 1.2E-46 262.8 19.1 168 3-172 26-193 (204)
4 3h4p_a Proteasome subunit beta 100.0 3.4E-42 1.1E-46 265.8 16.9 167 3-171 27-195 (219)
5 3unf_H Proteasome subunit beta 100.0 1.8E-41 6E-46 264.0 20.4 169 3-174 26-194 (234)
6 1yar_H Proteasome beta subunit 100.0 8.6E-42 3E-46 263.2 18.2 167 3-172 34-201 (217)
7 1ryp_L 20S proteasome; multica 100.0 1.1E-41 3.9E-46 261.5 18.4 167 3-171 26-193 (212)
8 1iru_M 20S proteasome; cell cy 100.0 1.2E-40 4.3E-45 255.9 21.6 165 3-167 35-209 (213)
9 1yar_A Proteasome alpha subuni 100.0 5.2E-41 1.8E-45 261.3 18.9 168 3-172 59-230 (233)
10 1ryp_M 20S proteasome; multica 100.0 1.9E-40 6.5E-45 256.4 21.5 166 3-168 35-219 (222)
11 3h4p_A Proteasome subunit alph 100.0 5.7E-41 1.9E-45 265.4 18.3 170 3-174 63-236 (264)
12 1iru_A 20S proteasome; cell cy 100.0 4.1E-41 1.4E-45 263.9 16.9 169 3-172 61-236 (246)
13 3unf_N Proteasome subunit beta 100.0 1.2E-40 4.2E-45 253.4 19.0 169 3-174 26-196 (199)
14 1iru_B 20S proteasome; cell cy 100.0 6.1E-41 2.1E-45 260.9 17.7 167 3-172 56-226 (233)
15 1ryp_K 20S proteasome; multica 100.0 2.1E-40 7.2E-45 251.9 19.9 164 4-169 28-195 (198)
16 1ryp_A 20S proteasome; multica 100.0 2.7E-41 9.2E-46 264.4 15.2 167 3-172 55-233 (243)
17 1ryp_H 20S proteasome; multica 100.0 1.5E-40 5.3E-45 254.0 18.8 162 3-166 35-197 (205)
18 1iru_N 20S proteasome; cell cy 100.0 1.4E-40 4.7E-45 256.7 18.1 169 3-173 34-207 (219)
19 3nzj_F Proteasome component C1 100.0 4.7E-41 1.6E-45 268.4 15.9 168 6-173 62-238 (288)
20 1iru_J 20S proteasome; cell cy 100.0 4.3E-40 1.5E-44 251.5 20.2 166 3-168 34-202 (205)
21 1ryp_C 20S proteasome; multica 100.0 1.5E-40 5.1E-45 260.4 17.9 170 3-172 57-235 (244)
22 3nzj_K Proteasome component PR 100.0 2.2E-40 7.6E-45 264.4 19.2 167 3-171 101-268 (287)
23 3nzj_H Proteasome component PU 100.0 1.5E-39 5.2E-44 256.6 23.2 157 3-160 55-211 (261)
24 1ryp_I 20S proteasome; multica 100.0 1.2E-39 4E-44 252.0 21.7 159 3-162 26-185 (222)
25 1ryp_J 20S proteasome; multica 100.0 2E-39 6.8E-44 247.6 21.7 165 3-168 34-201 (204)
26 1iru_C 20S proteasome; cell cy 100.0 5E-40 1.7E-44 259.7 18.2 169 3-171 57-233 (261)
27 1iru_E 20S proteasome; cell cy 100.0 7.6E-40 2.6E-44 255.9 17.8 166 5-172 61-235 (241)
28 1iru_I 20S proteasome; cell cy 100.0 2.4E-39 8.1E-44 252.1 20.3 159 3-162 26-184 (234)
29 1ryp_E 20S proteasome; multica 100.0 9.6E-40 3.3E-44 255.5 17.8 166 5-172 53-229 (242)
30 1ryp_D 20S proteasome; multica 100.0 2.7E-39 9.1E-44 252.8 20.2 166 3-172 54-228 (241)
31 1iru_F 20S proteasome; cell cy 100.0 8.4E-40 2.9E-44 258.7 16.6 166 6-172 58-230 (263)
32 1iru_G 20S proteasome; cell cy 100.0 1.5E-39 5E-44 256.1 17.5 166 5-171 60-232 (254)
33 1ryp_F 20S proteasome; multica 100.0 8.8E-40 3E-44 254.4 16.0 165 6-172 57-230 (233)
34 1iru_K 20S proteasome; cell cy 100.0 3.6E-39 1.2E-43 245.7 18.8 161 3-163 27-190 (201)
35 1ryp_N 20S proteasome; multica 100.0 1.8E-39 6.3E-44 252.6 17.5 169 3-173 34-216 (233)
36 1ryp_G 20S proteasome; multica 100.0 1.3E-38 4.5E-43 249.4 21.5 162 7-169 59-230 (244)
37 3mi0_A Proteasome subunit alph 100.0 5.2E-39 1.8E-43 251.8 18.0 166 5-171 47-230 (248)
38 1j2p_A Alpha-ring, proteasome 100.0 6.3E-39 2.1E-43 251.4 18.3 166 4-172 60-230 (246)
39 1iru_D 20S proteasome; cell cy 100.0 2.5E-39 8.5E-44 254.0 15.7 166 3-172 54-226 (248)
40 1q5q_H Proteasome beta-type su 100.0 1.6E-38 5.5E-43 247.6 18.4 167 3-171 26-210 (235)
41 1g0u_M Proteasome component PR 100.0 1.5E-38 5E-43 251.9 17.0 169 3-173 67-249 (266)
42 1ryp_B 20S proteasome; multica 100.0 6.6E-38 2.2E-42 246.2 18.8 168 3-171 56-243 (250)
43 1q5q_A Proteasome alpha-type s 100.0 3.1E-38 1E-42 249.2 15.9 168 5-173 47-230 (259)
44 1q5r_H Proteasome beta-type su 100.0 4.8E-38 1.7E-42 251.7 17.0 166 3-170 91-274 (294)
45 2jay_A Proteasome; hydrolase; 100.0 6E-37 2E-41 245.1 15.2 167 3-171 83-267 (291)
46 1g3k_A ATP-dependent protease 100.0 5.5E-30 1.9E-34 190.9 14.7 142 3-157 26-173 (174)
47 1m4y_A ATP-dependent protease 100.0 9.4E-30 3.2E-34 189.1 13.9 141 3-156 26-171 (171)
48 2z3b_A ATP-dependent protease 100.0 1.5E-29 5.2E-34 189.5 14.7 141 3-156 32-179 (180)
49 3fpw_A HBPS, extracellular HAE 41.0 90 0.0031 22.7 6.5 42 121-166 62-103 (192)
50 2a2l_A Unknown; structural gen 34.3 73 0.0025 21.8 4.9 40 122-165 10-49 (145)
51 4eo3_A Bacterioferritin comigr 31.6 11 0.00039 29.6 0.3 45 86-130 103-148 (322)
52 1ixs_A Holliday junction DNA h 30.1 30 0.001 20.2 2.0 32 104-135 26-59 (62)
53 3fau_A NEDD4-binding protein 2 28.3 51 0.0017 20.0 3.0 39 123-161 7-45 (82)
54 1b66_A 6-pyruvoyl tetrahydropt 27.1 62 0.0021 22.1 3.5 46 23-68 62-117 (140)
55 2d9i_A NEDD4-binding protein 2 26.7 70 0.0024 20.0 3.5 39 123-161 15-53 (96)
56 1yx3_A Hypothetical protein DS 23.5 1.1E+02 0.0037 20.9 4.1 35 26-64 63-97 (132)
57 3kol_A Oxidoreductase, glyoxal 21.9 1.6E+02 0.0056 18.8 5.1 19 84-102 132-150 (156)
58 3lvl_A NIFU-like protein; prot 20.7 1E+02 0.0035 20.6 3.6 51 87-137 43-94 (129)
59 4gof_A Small glutamine-rich te 20.5 1E+02 0.0035 17.4 2.9 20 126-145 26-45 (52)
60 1apy_B Aspartylglucosaminidase 20.4 98 0.0034 21.3 3.4 56 101-161 48-107 (141)
61 2lrg_A Uncharacterized protein 20.4 1.1E+02 0.0038 20.0 3.4 30 71-102 22-52 (126)
62 3gl3_A Putative thiol:disulfid 20.2 1.2E+02 0.0043 19.5 4.0 37 85-121 106-142 (152)
No 1
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.8e-43 Score=267.43 Aligned_cols=171 Identities=29% Similarity=0.399 Sum_probs=164.8
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.+++++++++|.+|+ ||++++|+||||
T Consensus 26 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-p~~~~~lvaG~D 104 (205)
T 1iru_H 26 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWD 104 (205)
T ss_dssp EEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-TCCEEEEEEEEE
T ss_pred EecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-CccEEEEEEEEe
Confidence 4456789999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred C-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 83 K-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 83 ~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
+ +||+||.+||+|++.++++.++|+|+.+++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|.
T Consensus 105 ~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 184 (205)
T 1iru_H 105 PQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGV 184 (205)
T ss_dssp TTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEE
T ss_pred CCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCe
Confidence 7 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCC
Q psy11707 162 QGRFLGHQKGPNS 174 (177)
Q Consensus 162 ~~~~l~~~~~~~~ 174 (177)
+++.++.+|++..
T Consensus 185 ~~~~l~~~ei~~~ 197 (205)
T 1iru_H 185 ERQVLLGDQIPKF 197 (205)
T ss_dssp EEEEECGGGSCCC
T ss_pred EEEEeChHHhhHH
Confidence 8999999999875
No 2
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.3e-42 Score=265.01 Aligned_cols=168 Identities=29% Similarity=0.404 Sum_probs=159.5
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++.+++++.+++++++++|.++.|||++++|+||||
T Consensus 26 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D 105 (202)
T 1j2q_H 26 IASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGID 105 (202)
T ss_dssp EEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEE
T ss_pred EeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCCeEEEEcCCCceeeec-eeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 83 KRGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
++||+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|
T Consensus 106 ~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g- 184 (202)
T 1j2q_H 106 SEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDE- 184 (202)
T ss_dssp TTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSC-
T ss_pred CCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-
Confidence 8899999999999999999 99999999999999999999999999999999999999999999999999999999997
Q ss_pred EEEEecCCCCC
Q psy11707 162 QGRFLGHQKGP 172 (177)
Q Consensus 162 ~~~~l~~~~~~ 172 (177)
.+.++++|++
T Consensus 185 -~~~l~~~ei~ 194 (202)
T 1j2q_H 185 -FYQYSPEEVE 194 (202)
T ss_dssp -EEECHHHHHH
T ss_pred -eEEeCHHHHH
Confidence 4467776653
No 3
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=3.7e-42 Score=262.82 Aligned_cols=168 Identities=60% Similarity=1.019 Sum_probs=159.7
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.+|++||++++|+||||
T Consensus 26 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~~~~~v~~lvaG~D 105 (204)
T 1iru_L 26 IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWD 105 (204)
T ss_dssp EEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCBEEEEEEEC
T ss_pred EEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|.+
T Consensus 106 ~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~ 185 (204)
T 1iru_L 106 KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWI 185 (204)
T ss_dssp SSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEE
T ss_pred CCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceE
Confidence 98999999999999999999999999999999999999999999999999999999999999989999999999999754
Q ss_pred EEEecCCCCC
Q psy11707 163 GRFLGHQKGP 172 (177)
Q Consensus 163 ~~~l~~~~~~ 172 (177)
.++++|++
T Consensus 186 --~l~~~ei~ 193 (204)
T 1iru_L 186 --RVSSDNVA 193 (204)
T ss_dssp --EEEEEEHH
T ss_pred --EeCHHHHH
Confidence 57766654
No 4
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.4e-42 Score=265.80 Aligned_cols=167 Identities=28% Similarity=0.416 Sum_probs=158.4
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.++.+||+|++|+||||
T Consensus 27 i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D 106 (219)
T 3h4p_a 27 VADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYD 106 (219)
T ss_dssp EEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTTTTTCCCCCEEEEEE
T ss_pred eeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCeEEEEcCCCceeeec-eeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCc
Q psy11707 83 K-RGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQW 160 (177)
Q Consensus 83 ~-~gp~ly~id~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg 160 (177)
+ +||+||.+||+|++.+++ +.|+|+|+.+++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|
T Consensus 107 ~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g 186 (219)
T 3h4p_a 107 LLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDG 186 (219)
T ss_dssp TTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTE
T ss_pred CCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC
Confidence 8 789999999999999998 99999999999999999999999999999999999999999999999999999999997
Q ss_pred eEEEEecCCCC
Q psy11707 161 NQGRFLGHQKG 171 (177)
Q Consensus 161 ~~~~~l~~~~~ 171 (177)
. +.++++|+
T Consensus 187 ~--~~l~~~ei 195 (219)
T 3h4p_a 187 V--KIFEDEEI 195 (219)
T ss_dssp E--EECCHHHH
T ss_pred e--EEcCHHHH
Confidence 4 45665443
No 5
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.8e-41 Score=264.02 Aligned_cols=169 Identities=25% Similarity=0.319 Sum_probs=159.7
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.+++++++++|.|+ +||++++|+||||
T Consensus 26 v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-~p~~v~llvaG~D 104 (234)
T 3unf_H 26 VADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQ-GHVGASLVVGGVD 104 (234)
T ss_dssp EEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEE
T ss_pred eccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcC-CCccEEEEEEEEe
Confidence 346788999999999999999999999999999999999999999999999999999999999874 6999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++|+.+||++++++||..+.++|..++++++|++|+++|.+
T Consensus 105 ~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~ 184 (234)
T 3unf_H 105 LNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAK 184 (234)
T ss_dssp TTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEE
T ss_pred CCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEE
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred EEEecCCCCCCC
Q psy11707 163 GRFLGHQKGPNS 174 (177)
Q Consensus 163 ~~~l~~~~~~~~ 174 (177)
.+.+.++|+-
T Consensus 185 --~l~~~~i~~~ 194 (234)
T 3unf_H 185 --LQRALSTPTE 194 (234)
T ss_dssp --EEEEEECCCC
T ss_pred --EeCceecccc
Confidence 6777777653
No 6
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=8.6e-42 Score=263.16 Aligned_cols=167 Identities=27% Similarity=0.368 Sum_probs=158.4
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|+++++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.++.|||++++|+||||
T Consensus 34 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D 113 (217)
T 1yar_H 34 IMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID 113 (217)
T ss_dssp EEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES
T ss_pred EecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC-Cce
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ-QWN 161 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk-dg~ 161 (177)
+||+||.+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|++ +|
T Consensus 114 -~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g- 191 (217)
T 1yar_H 114 -TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG- 191 (217)
T ss_dssp -SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE-
T ss_pred -CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC-
Confidence 899999999999999999999999999999999999999999999999999999999999998999999999999 66
Q ss_pred EEEEecCCCCC
Q psy11707 162 QGRFLGHQKGP 172 (177)
Q Consensus 162 ~~~~l~~~~~~ 172 (177)
.+.++++|++
T Consensus 192 -~~~~~~~ei~ 201 (217)
T 1yar_H 192 -YVQLPTDQIE 201 (217)
T ss_dssp -EEECCHHHHH
T ss_pred -EEEcCHHHHH
Confidence 4467776653
No 7
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.1e-41 Score=261.54 Aligned_cols=167 Identities=52% Similarity=0.920 Sum_probs=158.2
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.+|+.||++++|+||||
T Consensus 26 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~p~~v~~lvaG~D 105 (212)
T 1ryp_L 26 VASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYT 105 (212)
T ss_dssp EEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCBEEEEEEEE
T ss_pred EecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 83 -KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 83 -~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
++||+||.+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|.
T Consensus 106 ~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~ 185 (212)
T 1ryp_L 106 RKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGW 185 (212)
T ss_dssp TTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEE
T ss_pred CCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCce
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred EEEEecCCCC
Q psy11707 162 QGRFLGHQKG 171 (177)
Q Consensus 162 ~~~~l~~~~~ 171 (177)
+.++++|+
T Consensus 186 --~~~~~~ei 193 (212)
T 1ryp_L 186 --IYHGNHDV 193 (212)
T ss_dssp --EEEEEEEH
T ss_pred --EEECHHHH
Confidence 45666554
No 8
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.2e-40 Score=255.86 Aligned_cols=165 Identities=18% Similarity=0.258 Sum_probs=157.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|+++++|++||..+|++.+.++++.+++.|++.++.+++++.+|+++++++|.++.+||++++|+||||
T Consensus 35 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D 114 (213)
T 1iru_M 35 IHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLD 114 (213)
T ss_dssp EEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEC
T ss_pred EecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEc
Confidence 44678999999999999999999999999999999999999999999999999999999999887788999999999999
Q ss_pred CCC-CeEEEEcCCCceeeeceeEecCCcHHHHHHHHhc---------CCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEE
Q psy11707 83 KRG-PQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG---------YHWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152 (177)
Q Consensus 83 ~~g-p~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~---------~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~ie 152 (177)
++| |+||.+||+|++.++++.|+|+|+.+++++||+. |+++||.+||++++++||..+.++|..++++++
T Consensus 115 ~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~ 194 (213)
T 1iru_M 115 EEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALR 194 (213)
T ss_dssp TTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEE
T ss_pred CCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEE
Confidence 754 9999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEec
Q psy11707 153 GNASGQQWNQGRFLG 167 (177)
Q Consensus 153 v~iitkdg~~~~~l~ 167 (177)
|++|+++|++.+.++
T Consensus 195 v~vi~~~g~~~~~~~ 209 (213)
T 1iru_M 195 ICIVTKEGIREETVS 209 (213)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEcCCCeEEEEee
Confidence 999999999887765
No 9
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=5.2e-41 Score=261.30 Aligned_cols=168 Identities=19% Similarity=0.219 Sum_probs=159.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++.+++++.+|+++++++|.+++ |||++++|+
T Consensus 59 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lv 138 (233)
T 1yar_A 59 IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 138 (233)
T ss_dssp BCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEE
T ss_pred ccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999886 799999999
Q ss_pred EEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC
Q psy11707 79 AGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ 158 (177)
Q Consensus 79 aG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk 158 (177)
||||++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++|. ++++++|++|++
T Consensus 139 aG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~ 217 (233)
T 1yar_A 139 AGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITV 217 (233)
T ss_dssp EEECSSCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEET
T ss_pred EEEeCCCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEEC
Confidence 9999889999999999999999999999999999999999999999999999999999999999998 699999999999
Q ss_pred CceEEEEecCCCCC
Q psy11707 159 QWNQGRFLGHQKGP 172 (177)
Q Consensus 159 dg~~~~~l~~~~~~ 172 (177)
+|. ++.++++|+.
T Consensus 218 ~~~-~~~~~~~ei~ 230 (233)
T 1yar_A 218 GNK-YRIYDQEEVK 230 (233)
T ss_dssp TSC-CEECCHHHHH
T ss_pred CCC-EEECCHHHHH
Confidence 984 6778877654
No 10
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.9e-40 Score=256.45 Aligned_cols=166 Identities=20% Similarity=0.218 Sum_probs=158.2
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNG-ERISVAAASKLMCNMAYNYKGTGLSMGMMIAGW 81 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~ 81 (177)
|.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++.++ .+++++.+|+++++++|.++.+||++++|+|||
T Consensus 35 i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~ 114 (222)
T 1ryp_M 35 INSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGL 114 (222)
T ss_dssp EEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEE
T ss_pred ecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEE
Confidence 4677899999999999999999999999999999999999999999 999999999999999998888899999999999
Q ss_pred eCCC-CeEEEEcCCCceeeeceeEecCCcHHHHHHHHhc-----------------CCCCCCHHHHHHHHHHHHHHHHhc
Q psy11707 82 DKRG-PQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG-----------------YHWNLTDEEAHQLARKSIYHATYR 143 (177)
Q Consensus 82 d~~g-p~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~-----------------~~~~~s~~ea~~l~~~~l~~~~~~ 143 (177)
|++| |+||.+||+|++.++++.|+|+|+.+++++||+. |+++||.+||++++++||..+.++
T Consensus 115 D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~r 194 (222)
T 1ryp_M 115 DEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATER 194 (222)
T ss_dssp CTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9754 9999999999999999999999999999999998 889999999999999999999999
Q ss_pred cCCCCCcEEEEEEcCCceEEEEecC
Q psy11707 144 DFASGGLIRGNASGQQWNQGRFLGH 168 (177)
Q Consensus 144 d~~~g~~iev~iitkdg~~~~~l~~ 168 (177)
|..++++++|++|+++|++.+.+|-
T Consensus 195 d~~sg~~i~v~vi~~~g~~~~~~~~ 219 (222)
T 1ryp_M 195 HIQVGDGLEILIVTKDGVRKEFYEL 219 (222)
T ss_dssp BTTCCSEEEEEEEETTEEEEEEEEC
T ss_pred cccCCCcEEEEEEcCCCeEEEEeec
Confidence 9999999999999999998877753
No 11
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.7e-41 Score=265.39 Aligned_cols=170 Identities=22% Similarity=0.284 Sum_probs=162.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+|+++++++|.|++ |||+|++||
T Consensus 63 i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lv 142 (264)
T 3h4p_A 63 VKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLI 142 (264)
T ss_dssp BCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEE
T ss_pred cccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999875 699999999
Q ss_pred EEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC
Q psy11707 79 AGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ 158 (177)
Q Consensus 79 aG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk 158 (177)
||||++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++ .+++.++|++|++
T Consensus 143 aG~D~~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~ 220 (264)
T 3h4p_A 143 AGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITV 220 (264)
T ss_dssp EEEETTEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEET
T ss_pred EEEeCCcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEe
Confidence 99999899999999999999999999999999999999999999999999999999999999986 6889999999999
Q ss_pred CceEEEEecCCCCCCC
Q psy11707 159 QWNQGRFLGHQKGPNS 174 (177)
Q Consensus 159 dg~~~~~l~~~~~~~~ 174 (177)
++..++.|+++|++..
T Consensus 221 ~~~~~~~l~~~ei~~~ 236 (264)
T 3h4p_A 221 KDAQFKKIPVEEIKKL 236 (264)
T ss_dssp TTTEEEECCTTTTGGG
T ss_pred CCCcEEECCHHHHHHH
Confidence 9888999999998754
No 12
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=4.1e-41 Score=263.86 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=160.6
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+|+++++++|.|++ |||+|++|+
T Consensus 61 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lv 140 (246)
T 1iru_A 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMIL 140 (246)
T ss_dssp BCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEE
T ss_pred cCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999887764 699999999
Q ss_pred EEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q psy11707 79 AGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW--NLTDEEAHQLARKSIYHATYRDFASGGLIRGNA 155 (177)
Q Consensus 79 aG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~i 155 (177)
||||+ .||+||.+||+|++.++++.|+|+|+.+++++||+.|++ +|+.+||++++++||..+.++| .++++++|++
T Consensus 141 aG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~v 219 (246)
T 1iru_A 141 IGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGV 219 (246)
T ss_dssp EEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEE
T ss_pred EEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEE
Confidence 99997 789999999999999999999999999999999999999 9999999999999999999999 7899999999
Q ss_pred EcCCceEEEEecCCCCC
Q psy11707 156 SGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 156 itkdg~~~~~l~~~~~~ 172 (177)
|+++|.+++.++++|++
T Consensus 220 i~~~g~~~~~l~~~ei~ 236 (246)
T 1iru_A 220 VTVENPKFRILTEAEID 236 (246)
T ss_dssp EETTEEEEEECCHHHHH
T ss_pred EECCCCeEEECCHHHHH
Confidence 99999888899887764
No 13
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.2e-40 Score=253.41 Aligned_cols=169 Identities=27% Similarity=0.370 Sum_probs=159.8
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.++ +||++++|+||||
T Consensus 26 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~p~~v~~lvaG~D 104 (199)
T 3unf_N 26 VVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWD 104 (199)
T ss_dssp EEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHTT-TTCCCCEEEEEEE
T ss_pred eEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC-CCceEEEEEEEEe
Confidence 456789999999999999999999999999999999999999999999999999999999999986 4999999999999
Q ss_pred C-CCCeEEEEcCCCceeeec-eeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCc
Q psy11707 83 K-RGPQLYYVDSDGQRIKGN-VFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQW 160 (177)
Q Consensus 83 ~-~gp~ly~id~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg 160 (177)
+ ++|+||. |+|++..+. +.++|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|
T Consensus 105 ~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g 182 (199)
T 3unf_N 105 QREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAG 182 (199)
T ss_dssp TTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSC
T ss_pred CCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCC
Confidence 7 6799999 999988775 55569999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCC
Q psy11707 161 NQGRFLGHQKGPNS 174 (177)
Q Consensus 161 ~~~~~l~~~~~~~~ 174 (177)
++++.|+++|+|.+
T Consensus 183 ~~~~~l~~~ei~~~ 196 (199)
T 3unf_N 183 VDHRVILGDELPKF 196 (199)
T ss_dssp EEEEEECGGGSCCC
T ss_pred EEEEEcCcccCccc
Confidence 99999999999875
No 14
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=6.1e-41 Score=260.89 Aligned_cols=167 Identities=18% Similarity=0.180 Sum_probs=157.7
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|++ |||++++|+
T Consensus 56 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lv 135 (233)
T 1iru_B 56 YDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLI 135 (233)
T ss_dssp BCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEE
T ss_pred cccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999876 699999999
Q ss_pred EEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC
Q psy11707 79 AGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ 158 (177)
Q Consensus 79 aG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk 158 (177)
||||++||+||.+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++| .++++++|++|++
T Consensus 136 aG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~ 214 (233)
T 1iru_B 136 CGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNE 214 (233)
T ss_dssp EEECSSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEET
T ss_pred EEEeCCCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEEC
Confidence 999988999999999999999999999999999999999999999999999999999999999999 6789999999999
Q ss_pred CceEEEEecCCCCC
Q psy11707 159 QWNQGRFLGHQKGP 172 (177)
Q Consensus 159 dg~~~~~l~~~~~~ 172 (177)
+| .+.++++|++
T Consensus 215 ~g--~~~l~~~ei~ 226 (233)
T 1iru_B 215 AG--FRRLTPTEVK 226 (233)
T ss_dssp TE--EEECCHHHHH
T ss_pred CC--EEECCHHHHH
Confidence 98 5567776654
No 15
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2.1e-40 Score=251.91 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=154.8
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC--CCceEEEEEEEE
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG--TGLSMGMMIAGW 81 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~--~P~~v~~lvaG~ 81 (177)
.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+++ +||++++|+|||
T Consensus 28 ~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~ 107 (198)
T 1ryp_K 28 LKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGY 107 (198)
T ss_dssp EESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEE
T ss_pred EecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEE
Confidence 456889999999999999999999999999999999999999999999999999999999999865 499999999999
Q ss_pred eC--CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 82 DK--RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 82 d~--~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
|+ +||+||.+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++
T Consensus 108 D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 187 (198)
T 1ryp_K 108 DKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKD 187 (198)
T ss_dssp ETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETT
T ss_pred eCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCC
Confidence 95 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCC
Q psy11707 160 WNQGRFLGHQ 169 (177)
Q Consensus 160 g~~~~~l~~~ 169 (177)
|.+ .+++.
T Consensus 188 g~~--~~~~~ 195 (198)
T 1ryp_K 188 GIR--QVDDF 195 (198)
T ss_dssp EEE--EECCC
T ss_pred CEE--Eeccc
Confidence 755 45543
No 16
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2.7e-41 Score=264.45 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=157.4
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+|+++++++|.|++ |||+|++|+
T Consensus 55 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lv 134 (243)
T 1ryp_A 55 LDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTF 134 (243)
T ss_dssp BCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEE
T ss_pred cCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999977654 699999999
Q ss_pred EEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC-------CCCHHHHHHHHHHHHHHHHhccCCCCCc
Q psy11707 79 AGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW-------NLTDEEAHQLARKSIYHATYRDFASGGL 150 (177)
Q Consensus 79 aG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-------~~s~~ea~~l~~~~l~~~~~~d~~~g~~ 150 (177)
||||+ .||+||++||+|++.++++.|+|+|+..++++||+.|++ +||.+||++++++||..+.++| .++++
T Consensus 135 aG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~ 213 (243)
T 1ryp_A 135 VSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKND 213 (243)
T ss_dssp EEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTS
T ss_pred EEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCc
Confidence 99996 789999999999999999999999999999999999998 9999999999999999999999 68999
Q ss_pred EEEEEEcCCceEEEEecCCCCC
Q psy11707 151 IRGNASGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 151 iev~iitkdg~~~~~l~~~~~~ 172 (177)
++|++|+++| ++.++++|++
T Consensus 214 iev~vi~~~g--~~~l~~~ei~ 233 (243)
T 1ryp_A 214 LEVGVATKDK--FFTLSAENIE 233 (243)
T ss_dssp EEEEEEETTE--EEECCHHHHH
T ss_pred EEEEEEECCC--eEECCHHHHH
Confidence 9999999998 6778877654
No 17
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.5e-40 Score=254.03 Aligned_cols=162 Identities=24% Similarity=0.358 Sum_probs=156.0
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++ ++++.+++++++++|.+|++ |++++|+||||
T Consensus 35 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D 112 (205)
T 1ryp_H 35 IANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-LTAGIIVAGYD 112 (205)
T ss_dssp EEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT-CCEEEEEEEEE
T ss_pred EEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC-ceEEEEEEEEe
Confidence 44568899999999999999999999999999999999999999999 99999999999999999988 99999999999
Q ss_pred C-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 83 K-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 83 ~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
+ +||+||.+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|.
T Consensus 113 ~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~ 192 (205)
T 1ryp_H 113 DKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGV 192 (205)
T ss_dssp TTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEE
T ss_pred cCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCE
Confidence 7 789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEEe
Q psy11707 162 QGRFL 166 (177)
Q Consensus 162 ~~~~l 166 (177)
+++.+
T Consensus 193 ~~~~~ 197 (205)
T 1ryp_H 193 ERLIF 197 (205)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87776
No 18
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.4e-40 Score=256.69 Aligned_cols=169 Identities=21% Similarity=0.234 Sum_probs=159.1
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhcC--CCCceEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYEL-RNGERISVAAASKLMCNMAYNYK--GTGLSMGMMIA 79 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~~~~~~~la~~i~~~~~~~~--~~P~~v~~lva 79 (177)
+.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++ .++.+++++.+++++++++|.++ .+||++++|+|
T Consensus 34 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lva 113 (219)
T 1iru_N 34 ARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIG 113 (219)
T ss_dssp EEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred EecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEE
Confidence 4467889999999999999999999999999999999999998 99999999999999999999876 68999999999
Q ss_pred EEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEc
Q psy11707 80 GWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW--NLTDEEAHQLARKSIYHATYRDFASGGLIRGNASG 157 (177)
Q Consensus 80 G~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iit 157 (177)
|||++||+||.+||+|++.++++.|+|+|+++++++||+.|++ +||.+||++++++||..+.++|..++++++|++|+
T Consensus 114 G~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~ 193 (219)
T 1iru_N 114 GYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVT 193 (219)
T ss_dssp EEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEE
T ss_pred EEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEc
Confidence 9998899999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCC
Q psy11707 158 QQWNQGRFLGHQKGPN 173 (177)
Q Consensus 158 kdg~~~~~l~~~~~~~ 173 (177)
++|. +.+++++++.
T Consensus 194 ~~g~--~~~~~~~i~~ 207 (219)
T 1iru_N 194 EKGV--EIEGPLSTET 207 (219)
T ss_dssp TTEE--EEEEEECCCC
T ss_pred CCCE--EEcCCeeccc
Confidence 9984 4677666654
No 19
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.7e-41 Score=268.42 Aligned_cols=168 Identities=15% Similarity=0.069 Sum_probs=159.8
Q ss_pred CccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEEEE
Q psy11707 6 GSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIAGW 81 (177)
Q Consensus 6 ~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lvaG~ 81 (177)
++.+||++|++||+|+++|+.+|++.+.++++.+++.|++.++.+++++.+|+++++++|.||+ |||+|++|||||
T Consensus 62 ~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~ 141 (288)
T 3nzj_F 62 QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGV 141 (288)
T ss_dssp TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEE
T ss_pred cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999976 699999999999
Q ss_pred eCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC
Q psy11707 82 DKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG---YHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ 158 (177)
Q Consensus 82 d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk 158 (177)
|++||+||++||+|++.+++++|+|+|+.+++++||+. |+++||.+||++++++||..+.+++..+++.++|++|++
T Consensus 142 D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 142 DKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp ETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred eCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 99899999999999999999999999999999999999 999999999999999999999999988889999999999
Q ss_pred --CceEEEEecCCCCCC
Q psy11707 159 --QWNQGRFLGHQKGPN 173 (177)
Q Consensus 159 --dg~~~~~l~~~~~~~ 173 (177)
++..++++|.+++|.
T Consensus 222 ~~~~~~~~~vp~~~~~~ 238 (288)
T 3nzj_F 222 SETNGLHKFVKGDLLQE 238 (288)
T ss_dssp TTSTTCCEECCHHHHHH
T ss_pred cCCCceEEECCHHHHHH
Confidence 477888999876653
No 20
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=4.3e-40 Score=251.53 Aligned_cols=166 Identities=21% Similarity=0.222 Sum_probs=156.7
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.++..||++++|+||||
T Consensus 34 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D 113 (205)
T 1iru_J 34 LVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLD 113 (205)
T ss_dssp EEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEEC
T ss_pred EeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999877767999999999999
Q ss_pred C--CCCeEEEEcCCCceeee-ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 83 K--RGPQLYYVDSDGQRIKG-NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 83 ~--~gp~ly~id~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
+ +||+||.+||+|++.++ .+.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++
T Consensus 114 ~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 193 (205)
T 1iru_J 114 PKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKD 193 (205)
T ss_dssp TTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESS
T ss_pred CCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCC
Confidence 5 78999999999999776 56999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecC
Q psy11707 160 WNQGRFLGH 168 (177)
Q Consensus 160 g~~~~~l~~ 168 (177)
|.+++.++.
T Consensus 194 g~~~~~~~~ 202 (205)
T 1iru_J 194 KITTRTLKA 202 (205)
T ss_dssp BEEEEEBCC
T ss_pred CEEEEEeec
Confidence 999888764
No 21
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.5e-40 Score=260.36 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=159.4
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----CCCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK----GTGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~----~~P~~v~~lv 78 (177)
+.+++.+||++|++|++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|+ .|||++++|+
T Consensus 57 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lv 136 (244)
T 1ryp_C 57 EQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIY 136 (244)
T ss_dssp CSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEE
T ss_pred cCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEE
Confidence 347789999999999999999999999999999999999999999999999999999999998875 3699999999
Q ss_pred EEEe-CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEc
Q psy11707 79 AGWD-KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASG 157 (177)
Q Consensus 79 aG~d-~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iit 157 (177)
|||| ++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++|+.+||++++++||..+.++|..++++++|++|+
T Consensus 137 aG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~ 216 (244)
T 1ryp_C 137 AGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIR 216 (244)
T ss_dssp EEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEE
T ss_pred EEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEE
Confidence 9999 678999999999999999999999999999999999999999999999999999999999966679999999999
Q ss_pred --CCceE--EEEecCCCCC
Q psy11707 158 --QQWNQ--GRFLGHQKGP 172 (177)
Q Consensus 158 --kdg~~--~~~l~~~~~~ 172 (177)
++|.+ ++.|+.+|+.
T Consensus 217 ~~~~~~~~~~~~l~~~ei~ 235 (244)
T 1ryp_C 217 KGANDGEVYQKIFKPQEIK 235 (244)
T ss_dssp CCSSSSSCEEEECCHHHHH
T ss_pred eecCCCceeEEECCHHHHH
Confidence 99875 7888877653
No 22
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.2e-40 Score=264.39 Aligned_cols=167 Identities=53% Similarity=0.922 Sum_probs=158.5
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
|.+++.+||++|+++++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+|++||++++|+||||
T Consensus 101 i~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D 180 (287)
T 3nzj_K 101 VASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYT 180 (287)
T ss_dssp EEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEE
T ss_pred eecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 83 -KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 83 -~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
.+||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.+||..+|+.++|++|++||.
T Consensus 181 ~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~ 260 (287)
T 3nzj_K 181 RKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGW 260 (287)
T ss_dssp TTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEE
T ss_pred CCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCE
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred EEEEecCCCC
Q psy11707 162 QGRFLGHQKG 171 (177)
Q Consensus 162 ~~~~l~~~~~ 171 (177)
+ .++++++
T Consensus 261 ~--~l~~~ev 268 (287)
T 3nzj_K 261 I--YHGNHDV 268 (287)
T ss_dssp E--EEEEEEH
T ss_pred E--EeCHHHH
Confidence 4 5655443
No 23
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.5e-39 Score=256.63 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=151.9
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.+++++++.++.++ +||++++|+||||
T Consensus 55 i~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~~~gv~llvaG~D 133 (261)
T 3nzj_H 55 VADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVD 133 (261)
T ss_dssp EEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEE
T ss_pred eccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhc-CcccEEEEEEEEe
Confidence 456789999999999999999999999999999999999999999999999999999999998874 6899999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCc
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQW 160 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg 160 (177)
++||+||.+||+|++.++++.|+|+|+..++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|
T Consensus 134 ~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 134 PTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp TTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred CCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 989999999999999999999999999999999999999999999999999999999999999999999999999998
No 24
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.2e-39 Score=252.04 Aligned_cols=159 Identities=24% Similarity=0.337 Sum_probs=153.2
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|.++ +||++++|+||||
T Consensus 26 ~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~p~~v~~lvaG~D 104 (222)
T 1ryp_I 26 VADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVD 104 (222)
T ss_dssp EEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEE
T ss_pred eecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcC-CCCCeeEEEEEEe
Confidence 446688999999999999999999999999999999999999999999999999999999999885 7999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCc-e
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQW-N 161 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg-~ 161 (177)
++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++|..+++.++|++|+++| .
T Consensus 105 ~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~ 184 (222)
T 1ryp_I 105 PTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDA 184 (222)
T ss_dssp TTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCE
T ss_pred CCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCE
Confidence 989999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred E
Q psy11707 162 Q 162 (177)
Q Consensus 162 ~ 162 (177)
+
T Consensus 185 ~ 185 (222)
T 1ryp_I 185 E 185 (222)
T ss_dssp E
T ss_pred E
Confidence 5
No 25
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2e-39 Score=247.65 Aligned_cols=165 Identities=20% Similarity=0.221 Sum_probs=155.7
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|+ |++|+++|..+|++.+.++++.+++.|+++++.+++++.+++++++++|.++..||++++|+||||
T Consensus 34 ~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D 112 (204)
T 1ryp_J 34 GVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGIN 112 (204)
T ss_dssp EEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEEC
T ss_pred EeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEe
Confidence 3456899999999 999999999999999999999999999999999999999999999999877767999999999999
Q ss_pred C--CCCeEEEEcCCCceeee-ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 83 K--RGPQLYYVDSDGQRIKG-NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 83 ~--~gp~ly~id~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
+ +||+||.+||+|++.++ .+.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++
T Consensus 113 ~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 192 (204)
T 1ryp_J 113 SKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKD 192 (204)
T ss_dssp TTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESS
T ss_pred CCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCC
Confidence 5 78999999999999776 66999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecC
Q psy11707 160 WNQGRFLGH 168 (177)
Q Consensus 160 g~~~~~l~~ 168 (177)
|.+++.++-
T Consensus 193 g~~~~~~~~ 201 (204)
T 1ryp_J 193 EVVKRYLKM 201 (204)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeec
Confidence 999888764
No 26
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=5e-40 Score=259.73 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=159.0
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.+|+ |||+|++|+
T Consensus 57 ~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lv 136 (261)
T 1iru_C 57 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLY 136 (261)
T ss_dssp CCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEE
T ss_pred ccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEE
Confidence 4556689999999999999999999999999999999999999999999999999999999999975 699999999
Q ss_pred EEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 79 AGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW-NLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 79 aG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
||||+ .||+||.+||+|++.++++.|+|+|+.+++++||+.|++ +||.+||++++++||..+.++|..++++++|++|
T Consensus 137 aG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi 216 (261)
T 1iru_C 137 IGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATL 216 (261)
T ss_dssp EEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEE
T ss_pred EEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Confidence 99995 789999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCceE--EEEecCCCC
Q psy11707 157 GQQWNQ--GRFLGHQKG 171 (177)
Q Consensus 157 tkdg~~--~~~l~~~~~ 171 (177)
+++|.. ++.++++|+
T Consensus 217 ~~~~~~~~~~~l~~~ei 233 (261)
T 1iru_C 217 TRENGKTVIRVLKQKEV 233 (261)
T ss_dssp ECCSSSCEEEECCHHHH
T ss_pred EcCCCeeeEEECCHHHH
Confidence 999753 567776554
No 27
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=7.6e-40 Score=255.92 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=157.6
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC---------CCceEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG---------TGLSMG 75 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~---------~P~~v~ 75 (177)
+++.+||++|+++++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|++ |||+++
T Consensus 61 ~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~ 140 (241)
T 1iru_E 61 PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVA 140 (241)
T ss_dssp TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEE
T ss_pred ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEE
Confidence 67889999999999999999999999999999999999999999999999999999999988864 599999
Q ss_pred EEEEEEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q psy11707 76 MMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNA 155 (177)
Q Consensus 76 ~lvaG~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~i 155 (177)
+|+||||++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++ ..++++++|++
T Consensus 141 ~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~v 219 (241)
T 1iru_E 141 LLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELAT 219 (241)
T ss_dssp EEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEE
T ss_pred EEEEEEeCCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEE
Confidence 99999998889999999999999999999999999999999999999999999999999999999998 66799999999
Q ss_pred EcCCceEEEEecCCCCC
Q psy11707 156 SGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 156 itkdg~~~~~l~~~~~~ 172 (177)
|+++|. ++.++++|+.
T Consensus 220 i~~~~~-~~~l~~~ei~ 235 (241)
T 1iru_E 220 VQPGQN-FHMFTKEELE 235 (241)
T ss_dssp ECSSSC-CEECCHHHHH
T ss_pred EECCCC-eEECCHHHHH
Confidence 999987 7788877654
No 28
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.4e-39 Score=252.13 Aligned_cols=159 Identities=24% Similarity=0.349 Sum_probs=152.6
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWD 82 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~~P~~v~~lvaG~d 82 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.+++++++.+|.++ +||++++|+||||
T Consensus 26 ~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-~~~~v~llvaG~D 104 (234)
T 1iru_I 26 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYR-GYIGAALVLGGVD 104 (234)
T ss_dssp EEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEC
T ss_pred eccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-CCCceeEEEEEEc
Confidence 345688999999999999999999999999999999999999999999999999999999999886 5899999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceE
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQ 162 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~ 162 (177)
++||+||.+||+|++.++++.|+|+|+..++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|++
T Consensus 105 ~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~ 184 (234)
T 1iru_I 105 VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLD 184 (234)
T ss_dssp SSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEE
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999865
No 29
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=9.6e-40 Score=255.47 Aligned_cols=166 Identities=24% Similarity=0.254 Sum_probs=156.7
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----------CCCceE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK----------GTGLSM 74 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~----------~~P~~v 74 (177)
+++.+||++|++|++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|| .|||++
T Consensus 53 ~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v 132 (242)
T 1ryp_E 53 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGV 132 (242)
T ss_dssp GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSE
T ss_pred CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceE
Confidence 6788999999999999999999999999999999999999999999999999999999999875 459999
Q ss_pred EEEEEEEe-CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEE
Q psy11707 75 GMMIAGWD-KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRG 153 (177)
Q Consensus 75 ~~lvaG~d-~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev 153 (177)
++|+|||| .+||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++ ..++++++|
T Consensus 133 ~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v 211 (242)
T 1ryp_E 133 ALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQL 211 (242)
T ss_dssp EEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEE
T ss_pred EEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEE
Confidence 99999999 6789999999999999999999999999999999999999999999999999999999998 667899999
Q ss_pred EEEcCCceEEEEecCCCCC
Q psy11707 154 NASGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 154 ~iitkdg~~~~~l~~~~~~ 172 (177)
++|+++|. ++.++++|+.
T Consensus 212 ~vi~~~~~-~~~~~~~ei~ 229 (242)
T 1ryp_E 212 SCITKQDG-FKIYDNEKTA 229 (242)
T ss_dssp EEEETTTE-EEECCHHHHH
T ss_pred EEEECCCC-eEECCHHHHH
Confidence 99999986 7788877653
No 30
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2.7e-39 Score=252.83 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=155.8
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+|+++++++|.+++ |||++++|+
T Consensus 54 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lv 133 (241)
T 1ryp_D 54 DTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLI 133 (241)
T ss_dssp CTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEE
T ss_pred cccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEE
Confidence 4455899999999999999999999999999999999999999999999999999999999999875 599999999
Q ss_pred EEEeC--CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEE
Q psy11707 79 AGWDK--RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGY---HWNLTDEEAHQLARKSIYHATYRDFASGGLIRG 153 (177)
Q Consensus 79 aG~d~--~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~---~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev 153 (177)
||||+ .||+||.+||+|++.++++.|+|+|+.+++++||+.| +++||.+||++++++||..+.+ .++++++|
T Consensus 134 aG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v 210 (241)
T 1ryp_D 134 AGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEI 210 (241)
T ss_dssp EECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEE
T ss_pred EEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEE
Confidence 99997 7899999999999999999999999999999999999 9999999999999999999986 67899999
Q ss_pred EEEcCCceEEEEecCCCCC
Q psy11707 154 NASGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 154 ~iitkdg~~~~~l~~~~~~ 172 (177)
++|+++| .++.++++|++
T Consensus 211 ~vi~~~~-~~~~l~~~ei~ 228 (241)
T 1ryp_D 211 TVVKPDS-DIVALSSEEIN 228 (241)
T ss_dssp EEEETTT-EEEECCHHHHH
T ss_pred EEEECCC-cEEECCHHHHH
Confidence 9999997 46788877654
No 31
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=8.4e-40 Score=258.66 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=156.6
Q ss_pred CccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEEEE
Q psy11707 6 GSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIAGW 81 (177)
Q Consensus 6 ~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lvaG~ 81 (177)
++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|++ |||+|++|||||
T Consensus 58 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~ 137 (263)
T 1iru_F 58 AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGY 137 (263)
T ss_dssp CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEE
T ss_pred cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEE
Confidence 4779999999999999999999999999999999999999999999999999999999998763 799999999999
Q ss_pred eCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEcC
Q psy11707 82 DKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW--NLTDEEAHQLARKSIYHATYRD-FASGGLIRGNASGQ 158 (177)
Q Consensus 82 d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d-~~~g~~iev~iitk 158 (177)
|++||+||.+||+|++.++++.|+|+|+.+++++||+.|++ +||.+||++++++||..+.++| ..++++++|++|++
T Consensus 138 D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~ 217 (263)
T 1iru_F 138 DDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGK 217 (263)
T ss_dssp ETTEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEET
T ss_pred cCCCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEC
Confidence 99899999999999999999999999999999999999998 9999999999999999999999 47899999999999
Q ss_pred CceEEEEecCCCCC
Q psy11707 159 QWNQGRFLGHQKGP 172 (177)
Q Consensus 159 dg~~~~~l~~~~~~ 172 (177)
++ .++.++++|++
T Consensus 218 ~~-~~~~l~~~ei~ 230 (263)
T 1iru_F 218 DL-EFTIYDDDDVS 230 (263)
T ss_dssp TE-EEEEECSGGGH
T ss_pred CC-CeEECCHHHHH
Confidence 95 36788887764
No 32
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.5e-39 Score=256.14 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=156.1
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIAG 80 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lvaG 80 (177)
.++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.||+ |||+|++||||
T Consensus 60 ~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG 139 (254)
T 1iru_G 60 EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS 139 (254)
T ss_dssp TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEE
T ss_pred cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999985 79999999999
Q ss_pred Ee-CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 81 WD-KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 81 ~d-~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
|| +.||+||++||+|++.++++.|+|+|+.+++++||+.|+++|+.+||++++++||..+.++|..+++.++|++|+++
T Consensus 140 ~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 140 YSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL 219 (254)
T ss_dssp EETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred EeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence 99 67899999999999999999999999999999999999999999999999999999999888777889999999988
Q ss_pred --ceEEEEecCCCC
Q psy11707 160 --WNQGRFLGHQKG 171 (177)
Q Consensus 160 --g~~~~~l~~~~~ 171 (177)
| .++.++++++
T Consensus 220 ~~g-~~~~l~~~~i 232 (254)
T 1iru_G 220 TNG-RHEIVPKDIR 232 (254)
T ss_dssp TTT-CCEECCHHHH
T ss_pred CCC-CeEECCHHHH
Confidence 5 4667776654
No 33
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=8.8e-40 Score=254.40 Aligned_cols=165 Identities=21% Similarity=0.260 Sum_probs=155.4
Q ss_pred CccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----CCCceEEEEEEEE
Q psy11707 6 GSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK----GTGLSMGMMIAGW 81 (177)
Q Consensus 6 ~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~----~~P~~v~~lvaG~ 81 (177)
++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|| .|||+|++|+|||
T Consensus 57 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~ 136 (233)
T 1ryp_F 57 SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGY 136 (233)
T ss_dssp CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEE
T ss_pred cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEE
Confidence 467999999999999999999999999999999999999999999999999999999998875 4799999999999
Q ss_pred eCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC--CC--CHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEE
Q psy11707 82 DKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW--NL--TDEEAHQLARKSIYHATYRD-FASGGLIRGNAS 156 (177)
Q Consensus 82 d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~--s~~ea~~l~~~~l~~~~~~d-~~~g~~iev~ii 156 (177)
|++||+||++||+|++.++++.|+|+|+.+++++||+.|++ +| |.+||+++++++|..+. +| ..++++++|++|
T Consensus 137 D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi 215 (233)
T 1ryp_F 137 DKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIV 215 (233)
T ss_dssp ETTEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEE
T ss_pred eCCcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEE
Confidence 99899999999999999999999999999999999999998 99 99999999999999999 77 568999999999
Q ss_pred cCCceEEEEecCCCCC
Q psy11707 157 GQQWNQGRFLGHQKGP 172 (177)
Q Consensus 157 tkdg~~~~~l~~~~~~ 172 (177)
++++. ++.++++|+.
T Consensus 216 ~~~~~-~~~l~~~ei~ 230 (233)
T 1ryp_F 216 GKDTP-FTIYDGEAVA 230 (233)
T ss_dssp ETTEE-EEEEEGGGGG
T ss_pred ECCCC-EEECCHHHHH
Confidence 99953 6788888765
No 34
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=3.6e-39 Score=245.71 Aligned_cols=161 Identities=23% Similarity=0.333 Sum_probs=150.9
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HhcC-CCCceEEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA-YNYK-GTGLSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~-~~~~-~~P~~v~~lvaG 80 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.+++++++.+ +.++ .+||++++|+||
T Consensus 27 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG 106 (201)
T 1iru_K 27 QMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAG 106 (201)
T ss_dssp EEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTSSSCCCEEEEEEE
T ss_pred EEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCccEEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999998765 4433 369999999999
Q ss_pred EeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCC
Q psy11707 81 WDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQ 159 (177)
Q Consensus 81 ~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkd 159 (177)
||+ +||+||.+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++
T Consensus 107 ~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~ 186 (201)
T 1iru_K 107 YDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKN 186 (201)
T ss_dssp EETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETT
T ss_pred EeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCC
Confidence 997 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEE
Q psy11707 160 WNQG 163 (177)
Q Consensus 160 g~~~ 163 (177)
|+++
T Consensus 187 g~~~ 190 (201)
T 1iru_K 187 GIHD 190 (201)
T ss_dssp EEEC
T ss_pred CeEE
Confidence 8763
No 35
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.8e-39 Score=252.58 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=158.1
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHhcC--CCCceEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYEL-----RNGERISVAAASKLMCNMAYNYK--GTGLSMG 75 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~~~~~~~~~la~~i~~~~~~~~--~~P~~v~ 75 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++ .++.+++++.+++++++++|.++ .+||+++
T Consensus 34 ~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~ 113 (233)
T 1ryp_N 34 LRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNA 113 (233)
T ss_dssp EEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred eecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 4567899999999999999999999999999999999999999 89999999999999999999876 5899999
Q ss_pred EEEEEEeCC-CCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHHHhccCCCCC
Q psy11707 76 MMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW-----NLTDEEAHQLARKSIYHATYRDFASGG 149 (177)
Q Consensus 76 ~lvaG~d~~-gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-----~~s~~ea~~l~~~~l~~~~~~d~~~g~ 149 (177)
+|+||||++ ||+||.+||+|++.++++.|+|+|+.+++++||+.|++ +||.+||++++++||..+.++|..+++
T Consensus 114 ~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~ 193 (233)
T 1ryp_N 114 IIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSR 193 (233)
T ss_dssp EEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred EEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999975 89999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cEEEEEEcCC-ceEEEEecCCCCCC
Q psy11707 150 LIRGNASGQQ-WNQGRFLGHQKGPN 173 (177)
Q Consensus 150 ~iev~iitkd-g~~~~~l~~~~~~~ 173 (177)
+++|++|+++ |.+ .++++|++.
T Consensus 194 ~i~v~vi~~~~g~~--~~~~~~i~~ 216 (233)
T 1ryp_N 194 NFSLAIIDKNTGLT--FKKNLQVEN 216 (233)
T ss_dssp EEEEEEEETTTEEE--EEEEEECCS
T ss_pred cEEEEEEECCCCeE--EcChHhccc
Confidence 9999999999 754 566666554
No 36
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.3e-38 Score=249.37 Aligned_cols=162 Identities=16% Similarity=0.082 Sum_probs=152.8
Q ss_pred ccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEEEEe
Q psy11707 7 SMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIAGWD 82 (177)
Q Consensus 7 ~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lvaG~d 82 (177)
+.+||++|++|++|++||..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|++ +||++++|+||||
T Consensus 59 ~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D 138 (244)
T 1ryp_G 59 KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD 138 (244)
T ss_dssp TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE
T ss_pred ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEe
Confidence 459999999999999999999999999999999999999999999999999999999999865 7999999999999
Q ss_pred CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcC-
Q psy11707 83 KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG---YHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQ- 158 (177)
Q Consensus 83 ~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitk- 158 (177)
++||+||.+||+|++.++++.|+|+|+.+++++||+. |+++||.+||++++++||..+.++|..++++++|++|++
T Consensus 139 ~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~ 218 (244)
T 1ryp_G 139 KNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLS 218 (244)
T ss_dssp TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETT
T ss_pred CCcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEec
Confidence 8899999999999999999999999999999999997 999999999999999999999999999999999999998
Q ss_pred --CceEEEEecCC
Q psy11707 159 --QWNQGRFLGHQ 169 (177)
Q Consensus 159 --dg~~~~~l~~~ 169 (177)
+|. ++..|.+
T Consensus 219 ~~~g~-~~~~~~~ 230 (244)
T 1ryp_G 219 ETNGL-HKFVKGD 230 (244)
T ss_dssp TTTTS-EEECCTH
T ss_pred CCCCe-eeeChHH
Confidence 664 4456654
No 37
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=5.2e-39 Score=251.84 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=148.9
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHH-HHHHhcC--CCCceEEEEEEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNG-ERISVAAASKLMC-NMAYNYK--GTGLSMGMMIAG 80 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~i~-~~~~~~~--~~P~~v~~lvaG 80 (177)
+++.+|||+|++|++|+++|+.+|++.+.+.++.+++.|++.++ .+++++.++++++ .+.|.|+ .|||+|++||||
T Consensus 47 ~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG 126 (248)
T 3mi0_A 47 SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAE 126 (248)
T ss_dssp CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEE
T ss_pred CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEE
Confidence 45789999999999999999999999999999999999999999 8999999999999 5566665 589999999999
Q ss_pred EeC----CCCeEEEEcCCCceee-eceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-------hccCCCC
Q psy11707 81 WDK----RGPQLYYVDSDGQRIK-GNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHAT-------YRDFASG 148 (177)
Q Consensus 81 ~d~----~gp~ly~id~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~-------~~d~~~g 148 (177)
||+ +||+||++||+|++.+ |++.|+|+|+..++++||++|+++|+.+||++++++||..+. +++ .++
T Consensus 127 ~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~ 205 (248)
T 3mi0_A 127 VAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGV 205 (248)
T ss_dssp CCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CC
T ss_pred EcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCC
Confidence 998 7899999999999995 999999999999999999999999999999999999999998 444 567
Q ss_pred CcEEEEEEcCCc--eEEEEecCCCC
Q psy11707 149 GLIRGNASGQQW--NQGRFLGHQKG 171 (177)
Q Consensus 149 ~~iev~iitkdg--~~~~~l~~~~~ 171 (177)
++++|++|+++| .+++.|+++|+
T Consensus 206 ~~iev~vv~~~g~~~~f~~l~~~ei 230 (248)
T 3mi0_A 206 ASLEVAVLDANRPRRAFRRITGSAL 230 (248)
T ss_dssp TTEEEEEEETTSSSCCEEECCHHHH
T ss_pred CcEEEEEEECCCCcccEEECCHHHH
Confidence 899999999996 45777877654
No 38
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=6.3e-39 Score=251.44 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=155.5
Q ss_pred CCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEEE
Q psy11707 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMIA 79 (177)
Q Consensus 4 ~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lva 79 (177)
.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|++ |||++++|+|
T Consensus 60 ~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lva 139 (246)
T 1j2p_A 60 EKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIA 139 (246)
T ss_dssp CGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEE
T ss_pred ccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEE
Confidence 367889999999999999999999999999999999999999999999999999999999999876 5999999999
Q ss_pred EEeCCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEc-C
Q psy11707 80 GWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASG-Q 158 (177)
Q Consensus 80 G~d~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iit-k 158 (177)
||| +||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++ ..++++++|++|+ +
T Consensus 140 G~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~ 217 (246)
T 1j2p_A 140 GVN-EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVD 217 (246)
T ss_dssp EES-SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETT
T ss_pred EEC-CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcC
Confidence 999 899999999999999999999999999999999999999999999999999999999997 7789999999999 6
Q ss_pred CceEEEEecCCCCC
Q psy11707 159 QWNQGRFLGHQKGP 172 (177)
Q Consensus 159 dg~~~~~l~~~~~~ 172 (177)
++ .++.++++|++
T Consensus 218 ~~-~~~~l~~~ei~ 230 (246)
T 1j2p_A 218 DR-TFKEVSPEELK 230 (246)
T ss_dssp TC-CCEECCHHHHH
T ss_pred CC-ceEECCHHHHH
Confidence 53 45678777654
No 39
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.5e-39 Score=254.02 Aligned_cols=166 Identities=18% Similarity=0.269 Sum_probs=155.0
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMMI 78 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~lv 78 (177)
+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.|++ |||+|++||
T Consensus 54 ~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lv 133 (248)
T 1iru_D 54 QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALI 133 (248)
T ss_dssp SCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEE
T ss_pred ccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEE
Confidence 4557889999999999999999999999999999999999999999999999999999999999986 599999999
Q ss_pred EEEe-CCCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q psy11707 79 AGWD-KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL--TDEEAHQLARKSIYHATYRDFASGGLIRGNA 155 (177)
Q Consensus 79 aG~d-~~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~--s~~ea~~l~~~~l~~~~~~d~~~g~~iev~i 155 (177)
|||| ++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++| |.+||++++++||..+.+ .++++++|++
T Consensus 134 aG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~v 210 (248)
T 1iru_D 134 VGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAV 210 (248)
T ss_dssp EEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEE
T ss_pred EEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEE
Confidence 9999 688999999999999999999999999999999999999999 999999999999998886 4688999999
Q ss_pred EcCCceEEEEecCCCCC
Q psy11707 156 SGQQWNQGRFLGHQKGP 172 (177)
Q Consensus 156 itkdg~~~~~l~~~~~~ 172 (177)
|+++| .++.++++|++
T Consensus 211 i~~~g-~~~~l~~~ei~ 226 (248)
T 1iru_D 211 MRRDQ-SLKILNPEEIE 226 (248)
T ss_dssp EESSS-CEECCCHHHHH
T ss_pred EECCC-cEEECCHHHHH
Confidence 99998 36677766654
No 40
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.6e-38 Score=247.60 Aligned_cols=167 Identities=23% Similarity=0.295 Sum_probs=154.1
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC---CCCceEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYK---GTGLSMGMMIA 79 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~---~~P~~v~~lva 79 (177)
+.+++.+||++|+++++|++||..+|++.+.++++.+++.|++.++.+++++.+++.+++++|.++ .|||+|++|+|
T Consensus 26 ~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v~~lva 105 (235)
T 1q5q_H 26 IASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLV 105 (235)
T ss_dssp EEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCEEEEEE
T ss_pred EecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccceEEEEE
Confidence 346788999999999999999999999999999999999999999999999999999999999987 47999999999
Q ss_pred EEeCC-C-----CeEEEEcCCCceeee--ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCc-
Q psy11707 80 GWDKR-G-----PQLYYVDSDGQRIKG--NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGL- 150 (177)
Q Consensus 80 G~d~~-g-----p~ly~id~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~- 150 (177)
|||++ + |+||.+||+|++.++ ++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++|..+|+.
T Consensus 106 G~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~ 185 (235)
T 1q5q_H 106 GYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPD 185 (235)
T ss_dssp EECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCB
T ss_pred EEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcc
Confidence 99975 7 999999999999999 99999999999999999999999999999999999999999999987753
Q ss_pred -E-----EEEEEcCCceEEEEecCCCC
Q psy11707 151 -I-----RGNASGQQWNQGRFLGHQKG 171 (177)
Q Consensus 151 -i-----ev~iitkdg~~~~~l~~~~~ 171 (177)
+ +|++|+++|. +.++++|+
T Consensus 186 ~i~~~~~ev~vi~~~g~--~~l~~~ei 210 (235)
T 1q5q_H 186 LTRGIYPTAVTITQAGA--VHVSEETT 210 (235)
T ss_dssp TTTTBCCEEEEEETTEE--EECCHHHH
T ss_pred cccccccEEEEEeCCCe--EEeCHHHH
Confidence 2 9999999974 45665543
No 41
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.5e-38 Score=251.92 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=157.8
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHhcC--CCCceEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYEL-----RNGERISVAAASKLMCNMAYNYK--GTGLSMG 75 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~~~~~~~~~la~~i~~~~~~~~--~~P~~v~ 75 (177)
+.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++ .++.+++++.+++++++++|.++ .+||+|+
T Consensus 67 i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~ 146 (266)
T 1g0u_M 67 LRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNA 146 (266)
T ss_dssp EEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred eecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEE
Confidence 4567899999999999999999999999999999999999998 89999999999999999999876 5899999
Q ss_pred EEEEEEeCC-CCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHHHhccCCCCC
Q psy11707 76 MMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW-----NLTDEEAHQLARKSIYHATYRDFASGG 149 (177)
Q Consensus 76 ~lvaG~d~~-gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-----~~s~~ea~~l~~~~l~~~~~~d~~~g~ 149 (177)
+||||||++ ||+||.+||+|++.++++.|+|+|+.+++++||+.|++ +||.+||++++++||..+.++|..+++
T Consensus 147 ~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~ 226 (266)
T 1g0u_M 147 IIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSR 226 (266)
T ss_dssp EEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999975 89999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cEEEEEEcCC-ceEEEEecCCCCCC
Q psy11707 150 LIRGNASGQQ-WNQGRFLGHQKGPN 173 (177)
Q Consensus 150 ~iev~iitkd-g~~~~~l~~~~~~~ 173 (177)
.++|++|+++ |.+ .++++|++.
T Consensus 227 ~i~v~vI~k~~g~~--~~~~~ei~~ 249 (266)
T 1g0u_M 227 NFSLAIIDKNTGLT--FKKNLQVEN 249 (266)
T ss_dssp EEEEEEEETTTEEE--EEEEEECCC
T ss_pred cEEEEEEECCCCeE--EcCHHHhhh
Confidence 9999999999 754 566655554
No 42
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=6.6e-38 Score=246.18 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=155.0
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHhcCC----CCceEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL-YELRNGERISVAAASKLMCNMAYNYKG----TGLSMGMM 77 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~i~~~~~~~~~----~P~~v~~l 77 (177)
+.+++.+||++|++|++|++||..+|++.+.++++.+++. |+..++.+++++.+++.++++++.+++ |||++++|
T Consensus 56 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~l 135 (250)
T 1ryp_B 56 AMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLL 135 (250)
T ss_dssp BCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEE
T ss_pred ccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEE
Confidence 4567889999999999999999999999999999999999 999999999999999999999988875 69999999
Q ss_pred EEEEeC-CCCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 78 IAGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 78 vaG~d~-~gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
+||||+ +||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.+++. ++++++|++|
T Consensus 136 vaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi 214 (250)
T 1ryp_B 136 IAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAII 214 (250)
T ss_dssp EEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEE
T ss_pred EEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEE
Confidence 999997 68999999999999999999999999999999999999999999999999999999998765 7999999999
Q ss_pred cCCc--------------eEEEEecCCCC
Q psy11707 157 GQQW--------------NQGRFLGHQKG 171 (177)
Q Consensus 157 tkdg--------------~~~~~l~~~~~ 171 (177)
++++ ..++.|+++|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ei 243 (250)
T 1ryp_B 215 GDENPDLLGYTGIPTDKGPRFRKLTSQEI 243 (250)
T ss_dssp CSCCGGGTSEESCSSCCCCSEEECCHHHH
T ss_pred EccccccccccccccCCCCCeEECCHHHH
Confidence 9973 23667776654
No 43
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=3.1e-38 Score=249.19 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=150.3
Q ss_pred CCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHH-HHHhc--CCCCceEEEEEEE
Q psy11707 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNG-ERISVAAASKLMCN-MAYNY--KGTGLSMGMMIAG 80 (177)
Q Consensus 5 ~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~i~~-~~~~~--~~~P~~v~~lvaG 80 (177)
+++.+||++|++||+|+++|..+|++.+.++++.+++.|++.++ .+++++.+++++++ +.|.| +.+||+|++||||
T Consensus 47 s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG 126 (259)
T 1q5q_A 47 STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAE 126 (259)
T ss_dssp CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEE
T ss_pred CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEE
Confidence 36789999999999999999999999999999999999999988 49999999999999 44444 5689999999999
Q ss_pred Ee----CCCCeEEEEcCCCcee-eeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-----hccCCCCCc
Q psy11707 81 WD----KRGPQLYYVDSDGQRI-KGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHAT-----YRDFASGGL 150 (177)
Q Consensus 81 ~d----~~gp~ly~id~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~-----~~d~~~g~~ 150 (177)
|| ..||+||++||+|++. ++++.|+|+|+..++++||+.|+++|+.+||++++++||..+. ++|. ++++
T Consensus 127 ~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~ 205 (259)
T 1q5q_A 127 VGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVAS 205 (259)
T ss_dssp CCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSC
T ss_pred EcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCc
Confidence 99 6889999999999999 8899999999999999999999999999999999999999998 8898 8999
Q ss_pred EEEEEEcCCce--EEEEecCCCCCC
Q psy11707 151 IRGNASGQQWN--QGRFLGHQKGPN 173 (177)
Q Consensus 151 iev~iitkdg~--~~~~l~~~~~~~ 173 (177)
++|++|+++|. .++.++++|++.
T Consensus 206 iev~vi~~~~~~~~~~~l~~~ei~~ 230 (259)
T 1q5q_A 206 LEVAVLDQSRPRRAFRRIAGTALEQ 230 (259)
T ss_dssp SEEEEEETTSSSCCEEECCHHHHHT
T ss_pred EEEEEEECCCCcCCeEECCHHHHHH
Confidence 99999999952 456677766544
No 44
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=4.8e-38 Score=251.66 Aligned_cols=166 Identities=23% Similarity=0.313 Sum_probs=154.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC---CCceEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG---TGLSMGMMIA 79 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~---~P~~v~~lva 79 (177)
+.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++.++.+++++.++++|++++|.+++ +||+|++|||
T Consensus 91 i~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLva 170 (294)
T 1q5r_H 91 IASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLV 170 (294)
T ss_dssp EEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred eecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999876 8999999999
Q ss_pred EEeCC-C-----CeEEEEcCCCceeee--ceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCc-
Q psy11707 80 GWDKR-G-----PQLYYVDSDGQRIKG--NVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGL- 150 (177)
Q Consensus 80 G~d~~-g-----p~ly~id~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~- 150 (177)
|||++ + |+||++||+|++.++ ++.|+|+|+.+++++||+.|+++|+.+||++++++||..+.++|..+|+.
T Consensus 171 G~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~ 250 (294)
T 1q5r_H 171 GYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPD 250 (294)
T ss_dssp EECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCB
T ss_pred EEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCch
Confidence 99975 6 999999999999999 99999999999999999999999999999999999999999999988753
Q ss_pred -E-----EEEEEcCCceEEEEecCCC
Q psy11707 151 -I-----RGNASGQQWNQGRFLGHQK 170 (177)
Q Consensus 151 -i-----ev~iitkdg~~~~~l~~~~ 170 (177)
+ +|++|+++|.+ .++.+|
T Consensus 251 ~ir~i~~ev~vI~~~g~~--~l~~~e 274 (294)
T 1q5r_H 251 LTRGIYPTAVTITQAGAV--HVSEET 274 (294)
T ss_dssp TTTTBCCEEEEEETTEEE--ECCHHH
T ss_pred hhcccCCEEEEEECCCEE--EcCHHH
Confidence 5 99999999744 466544
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=6e-37 Score=245.12 Aligned_cols=167 Identities=23% Similarity=0.271 Sum_probs=144.3
Q ss_pred CCCCccCceEEecCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC---CCceEEEEEE
Q psy11707 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG---TGLSMGMMIA 79 (177)
Q Consensus 3 i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~---~P~~v~~lva 79 (177)
|.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.+++ +||+|++|+|
T Consensus 83 i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lva 162 (291)
T 2jay_A 83 ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLA 162 (291)
T ss_dssp --CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEE
T ss_pred eecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEE
Confidence 6678899999999999999999999999999999999999999999999999999999999999875 6999999999
Q ss_pred EEeCC-C-----CeEEEEcCCCcee--eeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhccCCCCCc-
Q psy11707 80 GWDKR-G-----PQLYYVDSDGQRI--KGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGL- 150 (177)
Q Consensus 80 G~d~~-g-----p~ly~id~~G~~~--~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~- 150 (177)
|||++ + |+||++||+|++. ++++.|+|+|+.+++++||+.|+++||.+||++++++||..+.++|..+++.
T Consensus 163 G~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e 242 (291)
T 2jay_A 163 GYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPD 242 (291)
T ss_dssp EECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC-----------
T ss_pred EEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcc
Confidence 99974 4 8999999999999 8999999999999999999999999999999999999999999999987763
Q ss_pred -E-----EEEEEcCCceEEEEecCCCC
Q psy11707 151 -I-----RGNASGQQWNQGRFLGHQKG 171 (177)
Q Consensus 151 -i-----ev~iitkdg~~~~~l~~~~~ 171 (177)
+ +|++|+++|. +.++++|+
T Consensus 243 ~vr~~~~~v~vi~~dg~--~~l~~~ei 267 (291)
T 2jay_A 243 LVRGIFPTAVIIDADGA--VDVPESRI 267 (291)
T ss_dssp -----CCEEEEEETTEE--EECCHHHH
T ss_pred cccccCCEEEEEECCCe--EEcCHHHH
Confidence 2 6999999974 45665543
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.97 E-value=5.5e-30 Score=190.93 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=126.6
Q ss_pred CCCCccCceEEe-cCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC-CCceEEEEEEE
Q psy11707 3 SSSGSMKKIVEI-NDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG-TGLSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~-~P~~v~~lvaG 80 (177)
+.+++.+||++| ++|++|+++|..+|++.+.++++.+++.|+. +....+..+++.++.++. +|+ +++++|
T Consensus 26 i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~r~~--~~~l~g 97 (174)
T 1g3k_A 26 VMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDWRTDRALRKL--EAMLIV 97 (174)
T ss_dssp EEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSTTGGGC--CCEEEE
T ss_pred eEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHhccCcCcc--eEEEEE
Confidence 567889999999 9999999999999999999999999999875 445566677777777654 465 467888
Q ss_pred EeCCCCeEEEEcCCCceeeec---eeEecCCcHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 81 WDKRGPQLYYVDSDGQRIKGN---VFSVGSGSVFAFGVLDTGYH-WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~~---~~a~G~gs~~~~~~Le~~~~-~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
+| +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||.+ +++++||..+.+||..++++++|++|
T Consensus 98 ~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i 172 (174)
T 1g3k_A 98 AD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEEL 172 (174)
T ss_dssp EC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred EC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEe
Confidence 87 79999999999999988 99999999999999999999 999965 79999999999999999999999998
Q ss_pred c
Q psy11707 157 G 157 (177)
Q Consensus 157 t 157 (177)
+
T Consensus 173 ~ 173 (174)
T 1g3k_A 173 P 173 (174)
T ss_dssp C
T ss_pred c
Confidence 5
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.97 E-value=9.4e-30 Score=189.13 Aligned_cols=141 Identities=17% Similarity=0.211 Sum_probs=124.4
Q ss_pred CCCCccCceEEe-cCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC-CCceEEEEEEE
Q psy11707 3 SSSGSMKKIVEI-NDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG-TGLSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~-~P~~v~~lvaG 80 (177)
|.+++.+||++| ++|++|+++|..+|++.+.++++.+++.|+.+ .++.++++. +.++.++. +||++++|++
T Consensus 26 i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l~-~~~~~~~~~~~~~~~~lv~- 98 (171)
T 1m4y_A 26 VLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVELA-KDWRTDRVLRRLEALLLVA- 98 (171)
T ss_dssp EEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHH-HHHHHCTTGGGCCCEEEEE-
T ss_pred EEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHH-HHHHHhCCCCceEEEEEEE-
Confidence 567789999999 99999999999999999999999999988744 266666654 45555553 5799998888
Q ss_pred EeCCCCeEEEEcCCCceeeec--eeEecCCcHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy11707 81 WDKRGPQLYYVDSDGQRIKGN--VFSVGSGSVFAFGVLDTGYH-WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~~--~~a~G~gs~~~~~~Le~~~~-~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~ii 156 (177)
| ||+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||. ++++++||..+.+||..++++++|.++
T Consensus 99 -D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 99 -D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp -C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred -c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 5 89999999999999988 99999999999999999999 99997 578999999999999999999999864
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.97 E-value=1.5e-29 Score=189.51 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=124.4
Q ss_pred CCCCccCceEEe-cCcEEEEEcCChhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC-CCceEEEEEEE
Q psy11707 3 SSSGSMKKIVEI-NDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKG-TGLSMGMMIAG 80 (177)
Q Consensus 3 i~~~~~~ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~~~~~-~P~~v~~lvaG 80 (177)
|.+++.+||++| ++|++|+++|..+|++.+.++++.+++.|+ + ..+..++ .+++.++.++. |||++++|+|
T Consensus 32 i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~~~~~~-~l~~~~~~~~~~rp~~~~~lva- 104 (180)
T 2z3b_A 32 VMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NLKRAAV-ELAKEWRSDKVLRKLEAMLIVM- 104 (180)
T ss_dssp EEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CHHHHHH-HHHHHHHHCTTGGGCCCCEEEE-
T ss_pred EecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--ChHHHHH-HHHHHHHhhhCcCcceEEEEEE-
Confidence 667889999999 999999999999999999999999999987 3 2333333 45666665554 6999999999
Q ss_pred EeCCCCeEEEEcCCCceeee--ceeEecCCcHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q psy11707 81 WDKRGPQLYYVDSDGQRIKG--NVFSVGSGSVFAFGVLDTGYHW---NLTDEEAHQLARKSIYHATYRDFASGGLIRGNA 155 (177)
Q Consensus 81 ~d~~gp~ly~id~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~---~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~i 155 (177)
++|+||.+||+|++.++ ++.|+|+|+++++++||+.|++ +||.+| ++.+||..+.+||..+|+.++|.+
T Consensus 105 ---d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~ 178 (180)
T 2z3b_A 105 ---NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEE 178 (180)
T ss_dssp ---CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEE
T ss_pred ---cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEE
Confidence 47999999999999984 9999999999999999999998 999999 477999999999999999999998
Q ss_pred E
Q psy11707 156 S 156 (177)
Q Consensus 156 i 156 (177)
|
T Consensus 179 i 179 (180)
T 2z3b_A 179 L 179 (180)
T ss_dssp E
T ss_pred E
Confidence 8
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=40.97 E-value=90 Score=22.69 Aligned_cols=42 Identities=24% Similarity=0.105 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEEe
Q psy11707 121 HWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRFL 166 (177)
Q Consensus 121 ~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~l 166 (177)
.+.+|.++|.+++..++..+.++ +..+-|.|++..|...-+.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~lla~~ 103 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGNTLVTL 103 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCCEEEEE
Confidence 46799999999999999998874 5689999999887664443
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=34.32 E-value=73 Score=21.85 Aligned_cols=40 Identities=18% Similarity=-0.074 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCceEEEE
Q psy11707 122 WNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWNQGRF 165 (177)
Q Consensus 122 ~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~~~~~ 165 (177)
+.+|.++|.+++..+...+..+ +..+-|.|++..|...-+
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll~~ 49 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTLLI 49 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEEEE
Confidence 4589999999999999988763 568999999988766444
No 51
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=31.58 E-value=11 Score=29.56 Aligned_cols=45 Identities=16% Similarity=-0.024 Sum_probs=30.7
Q ss_pred CeEEEEcCCCceee-eceeEecCCcHHHHHHHHhcCCCCCCHHHHH
Q psy11707 86 PQLYYVDSDGQRIK-GNVFSVGSGSVFAFGVLDTGYHWNLTDEEAH 130 (177)
Q Consensus 86 p~ly~id~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~ 130 (177)
|..|-||+.|.... |.-.-.+.....+...|++...++|++.+++
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I 148 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHI 148 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHH
Confidence 67899999999875 5555566666777777776654455544444
No 52
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=30.07 E-value=30 Score=20.22 Aligned_cols=32 Identities=16% Similarity=-0.016 Sum_probs=20.2
Q ss_pred EecCCcHHHHHHHHhcC--CCCCCHHHHHHHHHH
Q psy11707 104 SVGSGSVFAFGVLDTGY--HWNLTDEEAHQLARK 135 (177)
Q Consensus 104 a~G~gs~~~~~~Le~~~--~~~~s~~ea~~l~~~ 135 (177)
+.|+....+...+++.. .++++.++.++.+++
T Consensus 26 aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 26 ALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 56777777777776653 345677776665554
No 53
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=28.33 E-value=51 Score=20.02 Aligned_cols=39 Identities=18% Similarity=0.009 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 123 NLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 123 ~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
.|+.+||+..+.+.|..+..+-....+.-.+.+|+-.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 478999999988888876541000123346888887664
No 54
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=27.07 E-value=62 Score=22.06 Aligned_cols=46 Identities=2% Similarity=-0.119 Sum_probs=31.6
Q ss_pred cCChhhHHHHHHHHHHHH---HHHHHhc-------CCCCCHHHHHHHHHHHHHhcC
Q psy11707 23 AGGAADCVYWDRVLAKQC---RLYELRN-------GERISVAAASKLMCNMAYNYK 68 (177)
Q Consensus 23 sG~~aD~~~l~~~~~~~~---~~~~~~~-------~~~~~~~~la~~i~~~~~~~~ 68 (177)
.|..-|+..+.+.++..+ .+|++.+ +..+|.+.+|.+|.+.+...-
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~~l 117 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLL 117 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHHhc
Confidence 466668888888777622 2333333 346899999999999887643
No 55
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=26.71 E-value=70 Score=20.04 Aligned_cols=39 Identities=18% Similarity=0.009 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 123 NLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 123 ~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
.|+.+||+..+.+.|..+...-....+.-.|.||+-.|.
T Consensus 15 Gl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 579999999998888876521000123346888887663
No 56
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=23.50 E-value=1.1e+02 Score=20.89 Aligned_cols=35 Identities=14% Similarity=-0.037 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy11707 26 AADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64 (177)
Q Consensus 26 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~ 64 (177)
+.|=-.+++++ ..|...++..++++.|++.+...+
T Consensus 63 Te~HWeVI~fl----R~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 63 TEEHWDIINFL----REYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CHHHHHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----HHHHHHHCCCChHHHHHHHHHHHh
Confidence 33444555555 455667888899999999885544
No 57
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=21.87 E-value=1.6e+02 Score=18.78 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=15.0
Q ss_pred CCCeEEEEcCCCceeeece
Q psy11707 84 RGPQLYYVDSDGQRIKGNV 102 (177)
Q Consensus 84 ~gp~ly~id~~G~~~~~~~ 102 (177)
.|..+|..||.|+..+.-.
T Consensus 132 ~g~~~~~~DPdG~~iel~~ 150 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEIRC 150 (156)
T ss_dssp CCEEEEEECTTSCEEEEEE
T ss_pred CccEEEEECCCCCEEEEEe
Confidence 3458999999999988643
No 58
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=20.66 E-value=1e+02 Score=20.62 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=37.7
Q ss_pred eEE-EEcCCCceeeeceeEecCCcHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q psy11707 87 QLY-YVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKSI 137 (177)
Q Consensus 87 ~ly-~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea~~l~~~~l 137 (177)
.|| .+|..|.+....|.+.|.+...+.+.+-..+-...|.+||..+..+.+
T Consensus 43 ~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i 94 (129)
T 3lvl_A 43 KLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDI 94 (129)
T ss_dssp EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHH
T ss_pred EEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 455 466668888889999998887777666555556889999987766544
No 59
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=20.50 E-value=1e+02 Score=17.38 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q psy11707 126 DEEAHQLARKSIYHATYRDF 145 (177)
Q Consensus 126 ~~ea~~l~~~~l~~~~~~d~ 145 (177)
..|.++.|++||..+.+-|.
T Consensus 26 ~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 26 AQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHcCCCc
Confidence 45889999999999987654
No 60
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=20.39 E-value=98 Score=21.32 Aligned_cols=56 Identities=9% Similarity=-0.131 Sum_probs=34.1
Q ss_pred ceeEecCCcHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEcCCce
Q psy11707 101 NVFSVGSGSVFAFGVLDTG----YHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASGQQWN 161 (177)
Q Consensus 101 ~~~a~G~gs~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~~~~~d~~~g~~iev~iitkdg~ 161 (177)
-..++|.|..+++..+-.. .+..++.+||.+.+++-+..... +..--+..++++|.
T Consensus 48 a~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~~~~-----~~~ggvIa~d~~G~ 107 (141)
T 1apy_B 48 AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFP-----EFFGAVICANVTGS 107 (141)
T ss_dssp EEEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCT-----TCCEEEEEEETTSC
T ss_pred EEEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----CCcEEEEEEeCCCC
Confidence 4568999988766544432 33578999998877754443221 12234666677764
No 61
>2lrg_A Uncharacterized protein; unknown function; NMR {Bacteroides vulgatus} PDB: 3u6g_A*
Probab=20.36 E-value=1.1e+02 Score=19.99 Aligned_cols=30 Identities=33% Similarity=0.658 Sum_probs=22.3
Q ss_pred CceEEEEEEEEeCCCC-eEEEEcCCCceeeece
Q psy11707 71 GLSMGMMIAGWDKRGP-QLYYVDSDGQRIKGNV 102 (177)
Q Consensus 71 P~~v~~lvaG~d~~gp-~ly~id~~G~~~~~~~ 102 (177)
.|.+++.+++.+.+|| .|| |-.|.+....+
T Consensus 22 ~Fe~~~~fGa~n~~GpakLY--~e~GeYlGdSy 52 (126)
T 2lrg_A 22 SFEVSVSIGGADKGGPAKLY--NDKGEYIGDSY 52 (126)
T ss_dssp GEEEEEEEECEETTEECCEE--CTTSCEEESEE
T ss_pred ceEEEEEEeeccCCCCceee--cCCCcEechhh
Confidence 4889999999998776 565 56777765444
No 62
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=20.21 E-value=1.2e+02 Score=19.51 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCceeeeceeEecCCcHHHHHHHHhcCC
Q psy11707 85 GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH 121 (177)
Q Consensus 85 gp~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~ 121 (177)
-|.+|.+|+.|................+...|++...
T Consensus 106 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~ 142 (152)
T 3gl3_A 106 MPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG 142 (152)
T ss_dssp SSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHc
Confidence 3999999999987653222222233456666665543
Done!