RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11707
(177 letters)
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 222 bits (569), Expect = 4e-75
Identities = 101/149 (67%), Positives = 124/149 (83%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN YLLGT+AGGAADC +W+R+LA+QCR+YELRN ERISVAAASKL+ NM
Sbjct: 27 ASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANM 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y YKG GLSMG MI GWDKRGP LYYVDS+G RI G FSVGSGSV+A+GV+D GY ++
Sbjct: 87 VYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD 146
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
L E+A+ LAR++IY ATYRD SGG +
Sbjct: 147 LEVEQAYDLARRAIYQATYRDAYSGGAVN 175
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 220 bits (564), Expect = 5e-74
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ S +KI I + AG AAD R+ A + L+ L G VA ++++
Sbjct: 27 ADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQT 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+ Y+G + +++ G D GPQLY V G + ++GSG A +L+ + N
Sbjct: 87 LFRYQG-HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPN 145
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
+T E A +L ++I D SGG +
Sbjct: 146 MTLEAAQELLVEAITAGILSDLGSGGNVD 174
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 217 bits (554), Expect = 1e-72
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ KK+ +I+ Y T+AG D R + + LY L+ + + A + L+ NM
Sbjct: 35 MHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNM 94
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
K + +++ G D P ++ +D+ G ++ S GSGS F +GVL++ Y
Sbjct: 95 LNQVKYMPYMVQLLVGGIDT-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEK 153
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
+T +E L ++I A RD ASGG+I
Sbjct: 154 MTVDEGVDLVIRAISAAKQRDSASGGMID 182
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 216 bits (552), Expect = 2e-72
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S + KKI +I D + T AG D + R++ + LYE+R + +V A + L N+
Sbjct: 27 ASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNL 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRI-KGNVFSVGSGSVFAFGVLDTGYHW 122
+Y+ + ++I G D G +Y +D G I + ++ + GSGS+ A+GVL+ +
Sbjct: 87 LNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTP 146
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+ +EA +LA ++IY A RD ASG I
Sbjct: 147 EIGVDEAVELAVRAIYSAMKRDSASGDGID 176
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 214 bits (548), Expect = 7e-72
Identities = 85/150 (56%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++K+++EIN +LLGT+AGGAADC +W+ L QCRL+ELR ERISVAAASK++ N+
Sbjct: 27 ASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNL 86
Query: 64 AYNYKGTGLSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y YKG GLSMG MI G+ ++ GP +YYVDSDG R+KG++F VGSG FA+GVLD+ Y W
Sbjct: 87 VYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 146
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+L+ E+A L ++SI A +RD SGG +
Sbjct: 147 DLSVEDALYLGKRSILAAAHRDAYSGGSVN 176
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 217 bits (554), Expect = 9e-72
Identities = 86/150 (57%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN +LLGT+AGGAADC +W+ L QCRL+ELR ERISVAAASK++ N+
Sbjct: 102 ASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNL 161
Query: 64 AYNYKGTGLSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y YKG GLSMG MI G+ ++ GP +YYVDSDG R+KG++F VGSG FA+GVLD+ Y W
Sbjct: 162 VYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 221
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+L+ E+A L ++SI A +RD SGG +
Sbjct: 222 DLSVEDALYLGKRSILAAAHRDAYSGGSVN 251
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 212 bits (542), Expect = 1e-70
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ + KI I+ + AG AAD ++++ L+ L G V A++++ M
Sbjct: 27 ADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQM 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+ Y+G + +++ G D GP LY + G K ++GSGS+ A V + + +
Sbjct: 87 LFRYRGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPD 145
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
+ +EEA L ++I + D SG I
Sbjct: 146 MEEEEAKNLVSEAIAAGIFNDLGSGSNID 174
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 210 bits (537), Expect = 5e-70
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ + K+ I+ + AG AAD +++ L+ L V +A +++
Sbjct: 27 ADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQH 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+ Y+G + +++AG D G L+ + + G G S+GSGS+ A VL++ + +
Sbjct: 87 LFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD 145
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
LT EEA +LA +I + D SG +
Sbjct: 146 LTKEEAIKLASDAIQAGIWNDLGSGSNVD 174
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 209 bits (534), Expect = 1e-69
Identities = 12/151 (7%), Positives = 26/151 (17%), Gaps = 2/151 (1%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ + + + G V + + AA+
Sbjct: 28 VEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVA 87
Query: 64 AYNYKGTGLSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVF-SVGSGSVFAFGVLDTGYH 121
+ I + + IK G ++
Sbjct: 88 DARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK 147
Query: 122 WNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
E Y AT ++
Sbjct: 148 NEARLFETDPSGALIEYKATAIGSGRPVVME 178
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 210 bits (537), Expect = 2e-69
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ + K+ I+ + AG AAD +++ L+ L V +A +++
Sbjct: 56 ADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQH 115
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+ Y+G + +++AG D G L+ + + G G S+GSGS+ A VL++ + +
Sbjct: 116 LFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD 174
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
LT EEA +LA +I + D SG +
Sbjct: 175 LTKEEAIKLASDAIQAGIWNDLGSGSNVD 203
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 203 bits (520), Expect = 1e-67
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ K+ ++ + L+G AAD + A Q L+ L E V AA+ ++ N+
Sbjct: 27 VNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNI 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+Y Y+ L +++AGWD+R Y G I+ GSGS + +G +D Y
Sbjct: 87 SYKYRE-DLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPG 145
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
+T EE + +I A RD +SGG+I
Sbjct: 146 MTPEECRRFTTNAITLAMNRDGSSGGVIY 174
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 203 bits (518), Expect = 3e-67
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
++ K+ I+D + +G AAD + Q + + E V A+ L M
Sbjct: 27 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM 86
Query: 64 AYNYKGTGLSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y Y+ L G++IAGWD + G Q+Y V G ++ + GSGS + +G +D Y
Sbjct: 87 CYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYRE 145
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+T EE Q ++ A RD +SGG+IR
Sbjct: 146 GMTKEECLQFTANALALAMERDGSSGGVIR 175
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 194 bits (495), Expect = 6e-64
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ +KI + D L LAG A D + L + LYEL+ G +I ++ N+
Sbjct: 35 VTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANL 94
Query: 64 AYNYKGTGLSMGMMIAGWDKR--GPQLYYVDSDGQRIKGNVFSV-GSGSVFAFGVLDTGY 120
Y + +IAG D + P + +D G + + F V G+ + +G+ ++ +
Sbjct: 95 LYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW 154
Query: 121 HWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
N+ + + +++ +A RD SG +
Sbjct: 155 EPNMDPDHLFETISQAMLNAVDRDAVSGMGVI 186
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 193 bits (494), Expect = 1e-63
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S K +++ + L + AG A D V + + +LY +R +S A S +
Sbjct: 28 LKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQE 87
Query: 64 AYNY--KGTGLSMGMMIAGWDKR--GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG 119
+ ++I G+DK+ P+LY +D G +++ + G + F +LD
Sbjct: 88 LAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHH 147
Query: 120 YHWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
Y ++T EE L + + R +
Sbjct: 148 YRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVI 180
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 193 bits (493), Expect = 2e-63
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
++ K+ ++D + +G AAD ++ LY + G + AAS + +
Sbjct: 36 ANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAAS-VFKEL 94
Query: 64 AYNYKGTGLSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y K L+ G+++AG+D + ++Y + G K GSGS F +G D +
Sbjct: 95 CYENKD-NLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE 153
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
N++ EE + S+ A D +SGG+IR
Sbjct: 154 NMSKEETVDFIKHSLSQAIKWDGSSGGVIR 183
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 188 bits (481), Expect = 1e-61
Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 11/161 (6%)
Query: 3 SSSGSM------KKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELR-NGERISVAA 55
S GS+ +I+ +N+ + +G AD Y +VL + EL +G S A
Sbjct: 28 GSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRA 87
Query: 56 ASKLMCNMAYNYKGTG--LSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAF 113
+ Y+ + L M+I G+ L YVD G + + G G+ A
Sbjct: 88 IHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQ 147
Query: 114 GVLDTGYHW--NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+L L+ EA L + + YRD S +
Sbjct: 148 PLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQ 188
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 187 bits (478), Expect = 3e-61
Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 10/159 (6%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ K ++ D + +G DC+ +++ + ++Y+ N + ++ A + ++ +
Sbjct: 36 HTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTI 95
Query: 64 AYNYKGTGLSMGMMIAGWDKRG-PQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y+ + + +I G D+ G +Y D G + + + GS S +LD +
Sbjct: 96 LYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGF 155
Query: 123 ---------NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
L+ + A +L + A RD +G +R
Sbjct: 156 KNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALR 194
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 185 bits (472), Expect = 2e-60
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
K+ ++++ +L G A D V + + K +LY++RNG +S AA+
Sbjct: 28 MKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRN 87
Query: 64 AYN--YKGTGLSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGY 120
+ T + +++AG+D+ GP LYY+D K + G G+ +LD Y
Sbjct: 88 LADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY 147
Query: 121 HWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
++ E A +L RK + R +
Sbjct: 148 TPTISRERAVELLRKCLEELQKRFILNLPTFS 179
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 187 bits (477), Expect = 4e-60
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 11/165 (6%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++ + ++Y +AG A + R+ A + YE G ++ + + +M
Sbjct: 92 ASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASM 151
Query: 64 AYNYKGT---GLSMGMMIAGWD------KRGPQLYYVDSDGQRI--KGNVFSVGSGSVFA 112
G GL++ ++ G+D R ++ D G R + +VGSGS+FA
Sbjct: 152 VRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFA 211
Query: 113 FGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASG 157
L Y + +E A + A +S+Y A D A+GG
Sbjct: 212 KSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIY 256
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 185 bits (471), Expect = 6e-60
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++K+ ++Y +AG A + R+ A + YE G ++ + + +M
Sbjct: 27 ASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASM 86
Query: 64 AYNYKGT---GLSMGMMIAGWD------KRGPQLYYVDSDGQRI--KGNVFSVGSGSVFA 112
G GL++ ++ G+D R ++ D G R + +VGSGS+FA
Sbjct: 87 VRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFA 146
Query: 113 FGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNASG 157
L Y + +E A + A +S+Y A D A+GG
Sbjct: 147 KSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIY 191
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 182 bits (465), Expect = 2e-59
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S +KI LG + G A D + + + LY+L+ I ++L+ +
Sbjct: 35 VSNKFEKIFHYGHVFLG-ITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSS 93
Query: 64 AYNYKGTGLSMGMMIAGWDKRG--PQLYYVDSDGQRIKGNVFSV-GSGSVFAFGVLDTGY 120
Y + +G ++AG + + P + D G + F V G+ S FG+ ++ Y
Sbjct: 94 LYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY 153
Query: 121 HWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
NL E+ + +++ +A RD SG
Sbjct: 154 EPNLEPEDLFETISQALLNAADRDALSGWGAV 185
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 182 bits (463), Expect = 6e-58
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S ++K+ +DY +AG AA V + R+ A + YE G ++ A + M
Sbjct: 84 SGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIM 143
Query: 64 AYN---YKGTGLSMGMMIAGWD------KRGPQLYYVDSDGQR--IKGNVFSVGSGSVFA 112
GL ++AG+D + ++ D+ G + +VGSGS+FA
Sbjct: 144 VRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFA 203
Query: 113 FGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+ Y + ++A +++Y A D A+GG
Sbjct: 204 KSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDL 243
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 172 bits (438), Expect = 4e-55
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 19/168 (11%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYEL-RNGERISVAAASKLMCN 62
+S K+ + D ++ + G AAD + + Y N +++S+ +A++ + +
Sbjct: 36 NSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQH 95
Query: 63 MAYNYKGTGLSMGMMIAGWDKRG-PQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH 121
+ Y + + +IAG D+ G +Y D G + + G+ + LD +
Sbjct: 96 LLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVN 155
Query: 122 W-----------------NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+ L+ EE +L R S AT R G +
Sbjct: 156 FKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLE 203
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 164 bits (418), Expect = 8e-52
Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 19/168 (11%)
Query: 4 SSGSM------KKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRN-----GERIS 52
S GS+ ++++ + D + ++G +D + +R+L N E +
Sbjct: 29 SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALE 88
Query: 53 VAAASKLMCNMAYNYKGTG--LSMGMMIAGWDKRG-PQLYYVDSDGQRIKGNVFSVGSGS 109
+ + + + Y + L +++AG G L YV+ G + G G+
Sbjct: 89 PSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGA 148
Query: 110 VFAFGVLDTGYHW-----NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
A +L T + A + ++ YRD S
Sbjct: 149 HMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFS 196
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 162 bits (412), Expect = 1e-50
Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 13/161 (8%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRN-----GERISVAAASKL 59
+++++ + D + ++G +D + +R+L N E + + +
Sbjct: 69 FNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEY 128
Query: 60 MCNMAYNYKGTG--LSMGMMIAGWDKRG-PQLYYVDSDGQRIKGNVFSVGSGSVFAFGVL 116
+ + Y + L +++AG G L YV+ G + G G+ A +L
Sbjct: 129 LATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 188
Query: 117 DTGYHW-----NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
T + A + ++ YRD S
Sbjct: 189 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFS 229
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 100 bits (250), Expect = 2e-26
Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 9/155 (5%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELR-NGERISVAAASKLMCNM 63
S ++ K+ E+ D L G + R + + ++ + +
Sbjct: 47 STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQT 106
Query: 64 ---AYNYKGTGLSMGMMIAG----WDKRGPQLYYVDSDGQRIKGNVFSV-GSGSVFAFGV 115
+ + + + +A + PQLY + DG + F V G +
Sbjct: 107 LGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATA 166
Query: 116 LDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGL 150
+ Y +L E A +A ++ + +
Sbjct: 167 MRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV 201
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 77.7 bits (191), Expect = 4e-18
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S S++KI E+ D + AG + +D + + + R + + N+
Sbjct: 47 SRSLQKISELYDRVGFAAAGKFNE---FDNLRRGGIQFADTRGYAYDRRDVTGRQLANVY 103
Query: 65 YNYKGTGLSMGM-------MIAGW----DKRGPQLYYVDSDGQRIKGNVF-SVGSGSVFA 112
GT + +A + + P+LY + DG F +G +
Sbjct: 104 AQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPI 163
Query: 113 FGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGG 149
L Y N + +A ++A ++ +
Sbjct: 164 ANALKESYAENASLTDALRIAVAALRAGSADTSGGDQ 200
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 73.0 bits (180), Expect = 2e-16
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKLM 60
S++KIVEI+ ++ ++G AD + L + R+ + E ++V + ++ +
Sbjct: 61 PSSIEKIVEIDAHIGCAMSGLIADA----KTLIDKARVETQNHWFTYNETMTVESVTQAV 116
Query: 61 CNMAYNY---KGTGLSM------GMMIAGWDKRGPQLYYVD-SDGQRIKGNVF-----SV 105
N+A + +M ++ G D++GPQL+++D S G ++
Sbjct: 117 SNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPS------GTFVQCDARAI 170
Query: 106 GSGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHA 140
GS S A L YH ++T +EA + + +
Sbjct: 171 GSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQV 205
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 71.0 bits (175), Expect = 9e-16
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 16/147 (10%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKL 59
S+ K+ I ++ +G D RVL + R Y L E I A +
Sbjct: 57 DERSVHKVEPITKHIGLVYSGMGPDY----RVLVHRARKLAQQYYLVYQEPIPTAQLVQR 112
Query: 60 MCNMAYNYKGTGLSM------GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAF 113
+ ++ Y T ++I GW++ P L+ D G ++G V
Sbjct: 113 VASVMQEY--TQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGK 170
Query: 114 GVLDTGYHWNLTDEEAHQLARKSIYHA 140
L+ Y+ +L E+A A ++ +
Sbjct: 171 TFLEKRYNEDLELEDAIHTAILTLKES 197
Score = 71.2 bits (175), Expect = 1e-15
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 28/154 (18%)
Query: 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASK 58
S++KI +I+D++ +G AD RVL + RL Y L GE IS+ +K
Sbjct: 63 VKIRSIEKIFQIDDHVAAATSGLVADA----RVLIDRARLEAQIYRLTYGEEISIEMLAK 118
Query: 59 LMCNMAYNYKGTGLSM------GMMIAGWDKRGPQLYYVD-SDGQRIKGNVF-----SVG 106
+C++ Y T ++IAG DK +L+ D S G + ++G
Sbjct: 119 KICDIKQAY--TQHGGVRPFGVSLLIAGIDKNEARLFETDPS------GALIEYKATAIG 170
Query: 107 SGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHA 140
SG +L+ Y ++T +E +LA ++ A
Sbjct: 171 SGRPVVMELLEKEYRDDITLDEGLELAITALTKA 204
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 70.0 bits (172), Expect = 2e-15
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 30/154 (19%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKL 59
S++KI I+DY+ +G AD RVL R+ ++ G +++ K
Sbjct: 60 EQNSIEKIQLIDDYVAAVTSGLVADA----RVLVDFARISAQQEKVTYGSLVNIENLVKR 115
Query: 60 MCNMAYNYKGTGLSMGM-------MIAGWDKRGPQLYYVD-SDGQRIKGNVF-----SVG 106
+ + Y G+ + AG D+ GP+L+ D + G + ++G
Sbjct: 116 VADQMQQY---TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPA------GTINEYKATAIG 166
Query: 107 SGSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHA 140
SG L+ Y NL ++EA L K++ +
Sbjct: 167 SGKDAVVSFLEREYKENLPEKEAVTLGIKALKSS 200
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 69.2 bits (170), Expect = 6e-15
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKLM 60
S S++KIVEI+ ++ ++G AD R + + R + L E I+V + ++ +
Sbjct: 53 SDSIEKIVEIDRHIGCAMSGLTADA----RSMIEHARTAAVTHNLYYDEDINVESLTQSV 108
Query: 61 CNMA-----YNYKGTGLSM-----GMMIAGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGS 109
C++A L ++IAG D G QL++ + G + N ++GSGS
Sbjct: 109 CDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGS 168
Query: 110 VFAFGVLDTGYHWNLTDEEAHQLARKSIYHA 140
A L +H +LT +EA L K +
Sbjct: 169 EGAQAELLNEWHSSLTLKEAELLVLKILKQV 199
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 68.5 bits (168), Expect = 1e-14
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 17/147 (11%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKLM 60
GS K++ ++ ++ +AG AD R LA R + G I + + +
Sbjct: 60 EGSNKRLFNVDRHVGMAVAGLLADA----RSLADIAREEASNFRSNFGYNIPLKHLADRV 115
Query: 61 CNMAYNYKGTGLSM------GMMIAGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAF 113
+ Y T S M+ + G QLY +D G ++G A
Sbjct: 116 AMYVHAY--TLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAK 173
Query: 114 GVLDTGYHWNLTDEEAHQLARKSIYHA 140
++ +T + + K IY
Sbjct: 174 TEIEKLQMKEMTCRDIVKEVAKIIYIV 200
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 68.1 bits (167), Expect = 2e-14
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKLM 60
+ KKI+ +++++ ++AG AD R+L R + V+ L+
Sbjct: 57 AAHQKKILHVDNHIGISIAGLTADA----RLLCNFMRQECLDSRFVFDRPLPVSRLVSLI 112
Query: 61 CNMAYNYKGTGLSM------GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFG 114
+ T G++IAG+D GP ++ S+G+ S A
Sbjct: 113 GSKTQIP--TQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSART 170
Query: 115 VLDTGYH--WNLTDEEAHQLARKSIYHA 140
L+ E + +++
Sbjct: 171 YLERHMSEFMECNLNELVKHGLRALRET 198
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 67.3 bits (165), Expect = 3e-14
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKL 59
+++KI +I++++ +G AD RVL + R+ L I+V +K
Sbjct: 60 EKDTIEKIYKIDEHICAATSGLVADA----RVLIDRARIEAQINRLTYDIPITVKELAKK 115
Query: 60 MCNMAYNYKGTGLSM------GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAF 113
+C+ Y T ++IAG ++ P+LY D G ++ ++G G +
Sbjct: 116 ICDFKQQY--TQYGGVRPFGVSLLIAGVNE-VPKLYETDPSGALLEYKATAIGMGRMAVT 172
Query: 114 GVLDTGYHWNLTDEEAHQLARKSIYHA 140
+ Y +L+ ++A L ++ +
Sbjct: 173 EFFEKEYRDDLSFDDAMVLGLVAMGLS 199
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 67.3 bits (165), Expect = 3e-14
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 18/148 (12%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL-----YELRNGERISVAAASKL 59
S ++ K+ + + +G D RVL + R Y+ GE
Sbjct: 58 SETLSKVSLLTPDIGAVYSGMGPDY----RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSE 113
Query: 60 MCNMAYNYKGTGLSM------GMMIAGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFA 112
+ + T ++IAG D+ G LY VD G ++G GSV A
Sbjct: 114 VAKIMQEA--TQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAA 171
Query: 113 FGVLDTGYHWNLTDEEAHQLARKSIYHA 140
L+ ++ L E+A +A ++ +
Sbjct: 172 KTFLEKRWNDELELEDAIHIALLTLKES 199
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 66.1 bits (162), Expect = 6e-14
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 32/159 (20%)
Query: 2 SSSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAAS 57
S KKI++ ++++ +LAG A D RVL+ R L +++V A
Sbjct: 53 DELSSYQKKIIKCDEHMGLSLAGLAPDA----RVLSNYLRQQCNYSSLVFNRKLAVERAG 108
Query: 58 KLMCNMAYNYKGTGLSM------GMMIAGWDKRGPQLYYVD-SDGQRIKGNVF-----SV 105
L+C+ A T G++I G+DK G L S GNV ++
Sbjct: 109 HLLCDKAQKN--TQSYGGRPYGVGLLIIGYDKSGAHLLEFQPS------GNVTELYGTAI 160
Query: 106 GSGSVFAFGVLDTGYH----WNLTDEEAHQLARKSIYHA 140
G+ S A L+ + +E + ++I +
Sbjct: 161 GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQS 199
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 66.2 bits (162), Expect = 7e-14
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKLM 60
S +K+ ++ND + +AG AD +L R+ Y E I V + +
Sbjct: 59 DTSTEKLYKLNDKIAVAVAGLTADA----EILINTARIHAQNYLKTYNEDIPVEILVRRL 114
Query: 61 CNMAYNYKGTGLSM------GMMIAGWD-KRGPQLYYVD-SDGQRIKGNVF-----SVGS 107
++ Y T + AG+D + G QLY + S GN SVG+
Sbjct: 115 SDIKQGY--TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPS------GNYTGWKAISVGA 166
Query: 108 GSVFAFGVLDTGYHWNLTDEEAHQLARKSIYHA 140
+ A +L Y ++ ++A +LA K++
Sbjct: 167 NTSAAQTLLQMDYKDDMKVDDAIELALKTLSKT 199
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 65.8 bits (161), Expect = 1e-13
Identities = 30/155 (19%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 1 MSSSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAA 56
+ + + K+ +I+ +++ + +G AD R+L ++ R+ + L + ++V
Sbjct: 52 LQDTRITPSKVSKIDSHVVLSFSGLNADS----RILIEKARVEAQSHRLTLEDPVTVEYL 107
Query: 57 SKLMCNMAYNYKGTGLSM------GMMIAGWDKR--GPQLYYVDSDGQRIKGNVFSVGSG 108
++ + + Y T +IAG+D R P+LY + G + ++G
Sbjct: 108 TRYVAGVQQRY--TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRN 165
Query: 109 SVFAFGVLDTGYH---WNLTDEEAHQLARKSIYHA 140
S L+ Y T EE +L +S+
Sbjct: 166 SKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEV 200
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 65.5 bits (160), Expect = 2e-13
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 23/153 (15%)
Query: 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASK 58
KI ++ ++ +G D R L + R ++ I + A +
Sbjct: 59 LVPQKNVKIQVVDRHIGCVYSGLIPDG----RHLVNRGREEAASFKKLYKTPIPIPAFAD 114
Query: 59 LMCNMAYNYKGTGLSM------GMMIAGWDKRGPQLYYVDSDG--QRIKGNVFSVGSGSV 110
+ + T + + G DK G LY ++ G KG + G G
Sbjct: 115 RLGQYVQAH--TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGA--ATGKGRQ 170
Query: 111 FAFGVL---DTGYHWNLTDEEAHQLARKSIYHA 140
A L + L+ EA + A K IY A
Sbjct: 171 SAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 203
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 64.5 bits (158), Expect = 2e-13
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 28/161 (17%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKLM 60
++ I I+ + + G D R A + + + + G + +K M
Sbjct: 57 PTTVSYIFCISRTIGMVVNGPIPDA----RNAALRAKAEAAEFRYKYGYDMPCDVLAKRM 112
Query: 61 CNMAYNYKGTGLSM------GMMIAGWDK-RGPQLYYVDSDG--QRIKGNVFSVGSGSVF 111
N++ Y T + + D+ GP +Y D G K + G
Sbjct: 113 ANLSQIY--TQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT--ATGPKQQE 168
Query: 112 AFGVLDTGYHWN-------LTDEEAHQLARKSIYHATYRDF 145
L+ + + + E+ + A + A +F
Sbjct: 169 ITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEF 209
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 64.5 bits (158), Expect = 3e-13
Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 23/151 (15%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKLM 60
S ++ + +I + + + G AD R ++ R ++ + G I V K +
Sbjct: 63 SSTVTHLFKITENIGCVMTGMTADS----RSQVQRARYEAANWKYKYGYEIPVDMLCKRI 118
Query: 61 CNMAYNYKGTGLSM------GMMIAGWDK-RGPQLYYVDSDG--QRIKGNVFSVGSGSVF 111
+++ Y T + M++ G D+ +GPQ+Y D G K + G
Sbjct: 119 ADISQVY--TQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKAT--AAGVKQTE 174
Query: 112 AFGVLDTGYH--WNLTDEEAHQLARKSIYHA 140
+ L+ ++ T E+ + A +
Sbjct: 175 STSFLEKKVKKKFDWTFEQTVETAITCLSTV 205
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 64.2 bits (157), Expect = 3e-13
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 23/153 (15%)
Query: 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASK 58
KI ++ ++ +G D R L + R ++ I + A +
Sbjct: 55 LVPQKNVKIQVVDRHIGCVYSGLIPDG----RHLVNRGREEAASFKKLYKTPIPIPAFAD 110
Query: 59 LMCNMAYNYKGTGLSM------GMMIAGWDKRGPQLYYVDSDG--QRIKGNVFSVGSGSV 110
+ + T + + G DK G LY ++ G KG + G G
Sbjct: 111 RLGQYVQAH--TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGA--ATGKGRQ 166
Query: 111 FAFGVL---DTGYHWNLTDEEAHQLARKSIYHA 140
A L + L+ EA + A K IY A
Sbjct: 167 SAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 199
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 63.5 bits (155), Expect = 8e-13
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASKL 59
+KI ++N+ + ++AG +D VL + RL Y L+ E I
Sbjct: 58 EVFFSEKIYKLNEDMACSVAGITSDA----NVLTNELRLIAQRYLLQYQEPIPCEQLVTA 113
Query: 60 MCNMAYNYKGTGLSM------GMMIAGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFA 112
+C++ Y T ++ GWDK G QLY D G +G+ S A
Sbjct: 114 LCDIKQAY--TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAA 171
Query: 113 FGVLDTGYH-WNLTDEEAHQLARKSIYHA 140
+L Y +T + A LA K +
Sbjct: 172 VSMLKQDYKEGEMTLKSALALAIKVLNKT 200
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 60.7 bits (148), Expect = 8e-12
Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 19/152 (12%)
Query: 3 SSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL----YELRNGERISVAAASK 58
+++KI ++D + AG AD R++ + R+ + L + ++V ++
Sbjct: 54 QDERTVRKICALDDNVCMAFAGLTADA----RIVINRARVECQSHRLTVEDPVTVEYITR 109
Query: 59 LMCNMAYNYKGTGLSM------GMMIAGWDKRG-PQLYYVDSDGQRIKGNVFSVGSGSVF 111
+ ++ Y T + +I G+D G P+LY D G ++G G+
Sbjct: 110 YIASLKQRY--TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKS 167
Query: 112 AFGVLDTGYH--WNLTDEEAHQLARKSIYHAT 141
L+ Y TD+ +L K++
Sbjct: 168 VREFLEKNYTDEAIETDDLTIKLVIKALLEVV 199
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 54.2 bits (130), Expect = 8e-10
Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 3 SSSGSMKKIVEI-NDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMC 61
+ +K+ ++ N +L AG AD + Y N +R +V A +
Sbjct: 32 VMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN-GNLKRAAVELAKEWRS 90
Query: 62 NMAYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH 121
+ + M+ ++ L + + ++GSG +A
Sbjct: 91 DKVLR------KLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK 144
Query: 122 WNLTDEEAHQLARKSIYHA 140
A ++AR ++ A
Sbjct: 145 HAGESMSASEIARAALETA 163
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 54.2 bits (130), Expect = 9e-10
Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 5 SGSMKKIVEI-NDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
G+ +K+ ++ +L AG AD + + R + N + +V A +
Sbjct: 28 KGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWG-GNLTKAAVELAKDWRTDR 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+ ++ DK + + + + + ++GSG +A
Sbjct: 87 VL------RRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAK--ALLR 138
Query: 124 LTDEEAHQLARKSIYHA 140
TD A ++ K++ A
Sbjct: 139 NTDLSAREIVEKAMTIA 155
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 47.3 bits (112), Expect = 3e-07
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 9/137 (6%)
Query: 5 SGSMKKIVEIND-YLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
G+ +K+ + + +L AGG AD + ++ +++ + + +V A +
Sbjct: 28 KGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG-HLLKSAVELAKDWRTDR 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
A L + G Q + + ++GSG +A
Sbjct: 87 ALRKLEAMLIVADEKESLIITGIGDVV-----QPEEDQILAIGSGGNYALSAAR--ALVE 139
Query: 124 LTDEEAHQLARKSIYHA 140
T+ AH++ KS+ A
Sbjct: 140 NTELSAHEIVEKSLRIA 156
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 30.9 bits (69), Expect = 0.12
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 85 GPQLYYVDSDGQRIKGNVF-----SVGSGSVFAFGVLDTGYHWNLTDEEAH 130
GP LYYVD + +KG + + + F V + L D +
Sbjct: 76 GPHLYYVDPVNKVLKGEIPWSQELRPEAKNFKTFFVHTPNRTYYLMDPSGN 126
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class
fold, transferas; HET: SAM; 1.40A {Methanocaldococcus
jannaschii} PDB: 3ai9_X*
Length = 211
Score = 30.4 bits (68), Expect = 0.20
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 70 TGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEA 129
L ++ + G +YY+ +G+ ++ VF G D H + +E+
Sbjct: 121 RRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVDI---ENPVFIIG--D---HIGIGEEDE 172
Query: 130 HQLAR 134
L
Sbjct: 173 RFLDE 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.31
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 35/119 (29%)
Query: 73 SMGMMIAGWDKRGPQ---LYYVDSDGQRIKGN----VF-SVGSGSVFA---FGVLD---T 118
+ G I P +++ G+RI+ N +F ++ G + F ++ T
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 119 GYHW-------NLTDEEAHQ--LARKSIYHATYRDFASGGLIRGNASGQQWNQGRFLGH 168
Y + + T + Q L A + D S GLI +A+ F GH
Sbjct: 1716 SYTFRSEKGLLSAT--QFTQPALTLMEK--AAFEDLKSKGLIPADAT--------FAGH 1762
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 30.1 bits (67), Expect = 0.48
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGS--VFAFGVLDTGY 120
+G K YY D DG+ ++ S G+ + + G L +
Sbjct: 966 TSFRSGLVKTDAGTYYYDGDGRMVRNQTVSDGAMTYVLDENGKLVSES 1013
Score = 26.2 bits (57), Expect = 8.3
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 58 KLMCNMAYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAF---G 114
L + G+ K G +Y D + Q +K G+ + G
Sbjct: 880 NLGTSTQQFLPSQLSVQDNEGYGFVKEGNNYHYYDENKQMVKDAFIQDSVGNWYYLDKNG 939
Query: 115 VLDTGYHW 122
+
Sbjct: 940 NMVANQSP 947
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/80 (15%), Positives = 17/80 (21%), Gaps = 13/80 (16%)
Query: 71 GLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAH 130
G S+ +IA G RI F Y ++
Sbjct: 104 GHSVSSIIA--------GIASTHVGDRISDITM---ICPSPCFMNFPPDYVGGFERDDLE 152
Query: 131 QLAR--KSIYHATYRDFASG 148
+L Y A
Sbjct: 153 ELINLMDKNYIGWANYLAPL 172
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 27.7 bits (61), Expect = 2.7
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 121 HWNLTDEEAHQLARKSIYHATYRD 144
W L+ + ++AR S+Y + +
Sbjct: 620 VWKLSACDLCEIARNSVYQSGFSH 643
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 27.2 bits (61), Expect = 3.0
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
YH+ NL+++EA ++A ++ +D
Sbjct: 219 YHFISQQGVHNLSNDEATKIAGENADFHR-QD 249
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 27.3 bits (59), Expect = 3.1
Identities = 7/69 (10%), Positives = 22/69 (31%)
Query: 31 YWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIAGWDKRGPQLYY 90
++ + ++ GE + + + + Y D +++
Sbjct: 161 FYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220
Query: 91 VDSDGQRIK 99
V+ DG ++
Sbjct: 221 VNEDGSNVR 229
>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex,
bacter toxin; HET: GLA GAL NAG; 2.00A {Clostridium
difficile}
Length = 255
Score = 27.0 bits (60), Expect = 3.4
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGS 107
+ G+ + +Y ++DG G
Sbjct: 43 SIASTGYTIINDKHFYFNTDGIMQIGVFKGPDG 75
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 26.8 bits (60), Expect = 3.5
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 15/79 (18%)
Query: 71 GLSMGMMIAGW-DKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEA 129
G S+G +I R P + V G + Y+ +E+
Sbjct: 96 GHSVGALIGMLASIRRP---------ELFSHLVM---VGPSPCYLNDPPEYYGGFEEEQL 143
Query: 130 HQLAR--KSIYHATYRDFA 146
L + Y FA
Sbjct: 144 LGLLEMMEKNYIGWATVFA 162
>2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A
{Streptococcus pneumoniae} PDB: 2v04_A 2x8m_A* 2x8o_A*
2x8p_A* 2vyu_A
Length = 311
Score = 27.1 bits (60), Expect = 3.8
Identities = 5/37 (13%), Positives = 8/37 (21%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVF 111
+ YY DG ++ V
Sbjct: 62 DNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTS 98
Score = 25.9 bits (57), Expect = 7.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKG 100
G M GW G + YY+ S G + G
Sbjct: 229 GDMKTGWQYLGNKWYYLRSSGAMVTG 254
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 26.8 bits (60), Expect = 4.0
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
H NLT EEA ++A + + +D
Sbjct: 217 VHIKTDQGIKNLTIEEATKIAGSNPDYCQ-QD 247
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 26.8 bits (60), Expect = 4.0
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
+H+ NL+ E+A +L+++ + RD
Sbjct: 230 FHYKTDQGIKNLSVEDAARLSQEDPDYGI-RD 260
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl
lysine, regulator, developmental protein, metal-binding,
nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB:
2r57_A* 2r5a_A* 2r5m_A*
Length = 265
Score = 26.5 bits (58), Expect = 4.4
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 52 SVAAASKLMCNMAYNYKGTGLSMGMMIAGWDKRGPQLYYV----DSDGQRIK 99
++ A ++ + +G + DK+ PQL +I
Sbjct: 124 AMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIH 175
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural
genomics, joint center F structural genomics, JCSG,
protein structure initiative; 2.77A {Bacteroides
ovatus}
Length = 202
Score = 26.5 bits (58), Expect = 4.5
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 68 KGTGLSMGMMIAGWDKRGPQLYYVDSDG 95
+ + G+ +G Y+ DG
Sbjct: 24 RSGSSEFALFQDGYALKGSIPVYIAQDG 51
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 26.7 bits (60), Expect = 4.8
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
+H+ NL+D EA +L RD
Sbjct: 212 FHFVSQQGIKNLSDAEAGELVGNDRESHQ-RD 242
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 26.7 bits (60), Expect = 4.9
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
+HW NL +E Q+ K H T D
Sbjct: 210 FHWKSLQGIKNLDPKEVAQVQSKDYSHLT-ND 240
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium
difficile}
Length = 332
Score = 26.3 bits (58), Expect = 5.2
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKG 100
+ G+ + +Y ++DG G
Sbjct: 124 SIASTGYTIISGKHFYFNTDGIMQIG 149
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 26.7 bits (60), Expect = 5.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
W NL+ +EA ++ K HA+ D
Sbjct: 215 LRWVPKEGVHNLSADEATEVQGKDFNHAS-ND 245
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 26.5 bits (59), Expect = 5.7
Identities = 17/95 (17%), Positives = 24/95 (25%), Gaps = 12/95 (12%)
Query: 71 GLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAH 130
G S G Y ++ V +V V G L
Sbjct: 95 GHSTGGGEVVR-------YMARHPEDKVAKAVL---IAAVPPLMVQTPGNPGGLPKSVFD 144
Query: 131 QLAR--KSIYHATYRDFASGGLIRGNASGQQWNQG 163
S YRD +G N G + ++G
Sbjct: 145 GFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEG 179
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta
barrel, dimerization domain, ligase; 2.01A {Pyrococcus
abyssi} SCOP: b.40.4.4
Length = 107
Score = 25.2 bits (56), Expect = 6.2
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 71 GLSMGMMIAGWDKRGPQLYYVDSD---GQRIK 99
S GM++A D L D + G +++
Sbjct: 76 IGSQGMLLAADDGERVALLMPDKEVKLGAKVR 107
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like
fold, structural genomics, joint for structural
genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga
maritima} SCOP: c.138.1.1
Length = 297
Score = 26.3 bits (57), Expect = 6.3
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 112 AFGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGNAS 156
G+L +++EE + R+ R+ NA+
Sbjct: 62 VIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAA 106
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 26.4 bits (59), Expect = 6.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
H+ NL DEEA +LA + H+T RD
Sbjct: 226 VHFIANQGVHNLLDEEAGRLAGEDPDHST-RD 256
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core
domain (SCOP), viral protein; NMR {Mason-pfizer monkey
virus}
Length = 140
Score = 25.9 bits (56), Expect = 6.6
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 96 QRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAHQLARKS-------IYHATYRDFASG 148
+ +K G+ + + ++++ LT + + L R ++ + + +
Sbjct: 25 KELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVLSGGDHLLWKSEFFENCRD 84
Query: 149 GLIRGNASGQQWNQGRFLGH 168
R +G W+ G
Sbjct: 85 TAKRNQQAGNGWDFDMLTGS 104
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 26.4 bits (59), Expect = 6.8
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
YH+ NL + A ++A K+ D
Sbjct: 213 YHFKTNQGIKNLESQLAEEIAGKNPDFHI-ED 243
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PSI-2; 1.55A {Agrobacterium tumefaciens
str} SCOP: b.68.6.1
Length = 326
Score = 26.1 bits (58), Expect = 7.7
Identities = 1/18 (5%), Positives = 7/18 (38%)
Query: 81 WDKRGPQLYYVDSDGQRI 98
+D ++ + + +
Sbjct: 56 FDPASGTAWWFNILEREL 73
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 26.0 bits (58), Expect = 7.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHATYRD 144
+H+ +LT+EEA ++ + RD
Sbjct: 215 FHFHTMQGVKHLTNEEAAEIRKHDPDSNQ-RD 245
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
choline-binding protein, PCE, phosphorylcholine estera
hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Length = 547
Score = 26.2 bits (57), Expect = 8.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKG 100
G M GW K+ Y+ +DG R G
Sbjct: 472 GAMKQGWHKKANDWYFYKTDGSRAVG 497
Score = 25.8 bits (56), Expect = 9.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKG 100
M GW + Q YY+D DG G
Sbjct: 392 NQMEIGWVQDKEQWYYLDVDGSMKTG 417
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 25.8 bits (57), Expect = 8.7
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 71 GLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNLTDEEAH 130
G S G Y R+ + + + +
Sbjct: 92 GFSTGGGEVAR-------YIGRHGTARVAKAGL-ISAVPPLMLKTEANPGGLPMEVFDGI 143
Query: 131 QLARKSIYHATYRDFASGGLIRGNASGQQWNQG 163
+ A + Y+D ASG N G + + G
Sbjct: 144 RQASLADRSQLYKDLASGPFFGFNQPGAKSSAG 176
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 8.7
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 106 GSGSVFAF--GVLDTGYHWNLTD---EEAHQLARKSIYHATYRD 144
V F VL Y + L E Q + + + RD
Sbjct: 75 QEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRD 117
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 25.6 bits (57), Expect = 9.2
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 41 RLYELRNGERISVAAASKLMCNMAYNYKGTGLSMGMMIA 79
YELR + I++ A+++M + Y Y MM
Sbjct: 82 AFYELRKHKGITLENAAEIMSD--YVYFAV-----MMAK 113
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 25.7 bits (57), Expect = 9.3
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 81 WDKRGPQLYYVDSDGQRI 98
W++ L +VD +++
Sbjct: 20 WEEVSNSLLFVDIPAKKV 37
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin
modification, transcription repression, MBT repeat
structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB:
4fl6_A* 1wjs_A
Length = 324
Score = 25.7 bits (56), Expect = 9.7
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 52 SVAAASKLMCNMAYNYKGTGLSMGMMIAGWDKRGPQLYYV 91
+ AA L N +G +GM + DK+ P V
Sbjct: 124 AQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFICV 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.414
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,870,199
Number of extensions: 167766
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 139
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)