RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11707
(177 letters)
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 119 bits (299), Expect = 6e-35
Identities = 101/149 (67%), Positives = 124/149 (83%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++KK++EIN YLLGT+AGGAADC +W+R+LA+QCR+YELRN ERISVAAASKL+ NM
Sbjct: 27 ASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANM 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
Y YKG GLSMG MI GWDKRGP LYYVDS+G RI G FSVGSGSV+A+GV+D GY ++
Sbjct: 87 VYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD 146
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
L E+A+ LAR++IY ATYRD SGG +
Sbjct: 147 LEVEQAYDLARRAIYQATYRDAYSGGAVN 175
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 118 bits (297), Expect = 1e-34
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
++ K+ I+D + +G AAD + Q + + E V A+ L M
Sbjct: 27 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM 86
Query: 64 AYNYKGTGLSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y Y+ L G++IAGWD + G Q+Y V G ++ + GSGS + +G +D Y
Sbjct: 87 CYRYRED-LMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYRE 145
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+T EE Q ++ A RD +SGG+IR
Sbjct: 146 GMTKEECLQFTANALALAMERDGSSGGVIR 175
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 116 bits (290), Expect = 2e-33
Identities = 86/150 (57%), Positives = 113/150 (75%), Gaps = 1/150 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++K+++EIN +LLGT+AGGAADC +W+ L QCRL+ELR ERISVAAASK++ N+
Sbjct: 27 ASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNL 86
Query: 64 AYNYKGTGLSMGMMIAG-WDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y YKG GLSMG MI G K GP +YYVDSDG R+KG++F VGSG FA+GVLD+ Y W
Sbjct: 87 VYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 146
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+L+ E+A L ++SI A +RD SGG +
Sbjct: 147 DLSVEDALYLGKRSILAAAHRDAYSGGSVN 176
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 115 bits (288), Expect = 5e-33
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ + K+ I+ + AG AAD +++ L+ L V +A +++
Sbjct: 27 ADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQH 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+ Y+G +++AG D G L+ + + G G S+GSGS+ A VL++ + +
Sbjct: 87 LFKYQGHI-GAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD 145
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
LT EEA +LA +I + D SG +
Sbjct: 146 LTKEEAIKLASDAIQAGIWNDLGSGSNVD 174
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 114 bits (286), Expect = 8e-33
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+ + KI I+ + AG AAD ++++ L+ L G V A++++ M
Sbjct: 27 ADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQM 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+ Y+G + +++ G D GP LY + G K ++GSGS+ A V + + +
Sbjct: 87 LFRYRGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPD 145
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
+ +EEA L ++I + D SG I
Sbjct: 146 MEEEEAKNLVSEAIAAGIFNDLGSGSNID 174
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 112 bits (281), Expect = 9e-32
Identities = 32/156 (20%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S++KIVEI+ ++ ++G AD + + + E ++V + ++ + N+
Sbjct: 53 EPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNL 112
Query: 64 AYNYKGTGLSMG---------MMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFG 114
A + G ++ G D++GPQL+++D G ++ + ++GS S A
Sbjct: 113 ALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQS 172
Query: 115 VLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGL 150
L YH ++T +EA + + + + +
Sbjct: 173 SLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNI 208
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 108 bits (270), Expect = 2e-30
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
++ K+ ++D + +G AAD ++ LY + G + AAS +
Sbjct: 36 ANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAASVFKE-L 94
Query: 64 AYNYKGTGLSMGMMIAGWD-KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
Y K L+ G+++AG+D K ++Y + G K GSGS F +G D +
Sbjct: 95 CYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE 153
Query: 123 NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
N++ EE + S+ A D +SGG+IR
Sbjct: 154 NMSKEETVDFIKHSLSQAIKWDGSSGGVIR 183
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 107 bits (267), Expect = 4e-30
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
+ KK+ +I+ Y T+AG D R + + LY L+ + + A + L+ NM
Sbjct: 28 HKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNML 87
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWNL 124
K + +++ G D P ++ +D+ G ++ S GSGS F +GVL++ Y +
Sbjct: 88 NQVKYMPYMVQLLVGGIDT-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKM 146
Query: 125 TDEEAHQLARKSIYHATYRDFASGGLIR 152
T +E L ++I A RD ASGG+I
Sbjct: 147 TVDEGVDLVIRAISAAKQRDSASGGMID 174
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 107 bits (267), Expect = 5e-30
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 5/153 (3%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRN-GERISVAAASKLMCNM 63
++ +I+ +N+ + +G AD Y +VL + EL G S A +
Sbjct: 36 FRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRA 95
Query: 64 AYNYKGTGLSMG--MMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH 121
Y+ + + M+I G+ L YVD G + + G G+ A +L
Sbjct: 96 MYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLE 155
Query: 122 W--NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
L+ EA L + + YRD S +
Sbjct: 156 KQPVLSQTEARDLVERCMRVLYYRDARSYNRFQ 188
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 106 bits (265), Expect = 2e-29
Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 13/161 (8%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRN-----GERISVAAASKL 59
+++++ + D + ++G +D + +R+L N E + + +
Sbjct: 36 FNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEY 95
Query: 60 MCNMAYNYKGTGLSMG--MMIAGWDKRGP-QLYYVDSDGQRIKGNVFSVGSGSVFAFGVL 116
+ + Y + + +++AG G L YV+ G + G G+ A +L
Sbjct: 96 LATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 155
Query: 117 DTGYH-----WNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
T + A + ++ YRD S
Sbjct: 156 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFS 196
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 105 bits (262), Expect = 2e-29
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S K +++ + L + AG A D V + + +LY +R +S A S +
Sbjct: 28 LKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQE 87
Query: 64 AYNY--KGTGLSMGMMIAGWDKR--GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG 119
+ ++I G+DK+ P+LY +D G +++ + G + F +LD
Sbjct: 88 LAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHH 147
Query: 120 YHWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
Y ++T EE L + + R +
Sbjct: 148 YRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVI 180
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 105 bits (262), Expect = 4e-29
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+S ++K+ ++Y +AG A + R+ A + YE G ++ + + +M
Sbjct: 27 ASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASM 86
Query: 64 AYNYKGT---GLSMGMMIAGWD------KRGPQLYYVDSDGQRI--KGNVFSVGSGSVFA 112
G GL++ ++ G+D R ++ D G R + +VGSGS+FA
Sbjct: 87 VRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFA 146
Query: 113 FGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
L Y + +E A + A +S+Y A D A+GG
Sbjct: 147 KSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDL 186
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 104 bits (259), Expect = 5e-29
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S + KKI +I D + T AG D + R++ + LYE+R + +V A + L N+
Sbjct: 28 SKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLL 87
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVF-SVGSGSVFAFGVLDTGYHWN 123
+Y+ + ++I G D G +Y +D G I+ + GSGS+ A+GVL+ +
Sbjct: 88 NSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPE 147
Query: 124 LTDEEAHQLARKSIYHATYRDFASGGLIR 152
+ +EA +LA ++IY A RD ASG I
Sbjct: 148 IGVDEAVELAVRAIYSAMKRDSASGDGID 176
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 104 bits (261), Expect = 7e-29
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 2 SSSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMC 61
S KKI++ ++++ +LAG A D L +QC L +++V A L+C
Sbjct: 53 DELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLC 112
Query: 62 NMAYN----YKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAF---- 113
+ A Y G +G++I G+DK G L G + ++G+ S A
Sbjct: 113 DKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLE 172
Query: 114 GVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
LDT + +E + ++I + + + +
Sbjct: 173 RTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLS 211
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 104 bits (260), Expect = 1e-28
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 7/151 (4%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
KI ++ ++ +G D + ++ ++ I + A + +
Sbjct: 57 PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 116
Query: 65 YNYKGTG----LSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDT-- 118
+ + + G DK G LY ++ G + G G A L+
Sbjct: 117 QAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLV 176
Query: 119 -GYHWNLTDEEAHQLARKSIYHATYRDFASG 148
+ L+ EA + A K IY A +
Sbjct: 177 DHHPEGLSAREAVKQAAKIIYLAHEDNKEKD 207
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 102 bits (254), Expect = 5e-28
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 4/151 (2%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S++KI I+DY+ +G AD + ++ G +++ K + +
Sbjct: 48 EQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQ 107
Query: 64 AYNYKGTG----LSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG 119
Y G + ++ AG D+ GP+L+ D G + ++GSG L+
Sbjct: 108 MQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLERE 167
Query: 120 YHWNLTDEEAHQLARKSIYHATYRDFASGGL 150
Y NL ++EA L K++ +
Sbjct: 168 YKENLPEKEAVTLGIKALKSSLEEGEELKAP 198
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 102 bits (255), Expect = 6e-28
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 5/141 (3%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
GS K++ ++ ++ +AG AD + ++ + G I + + +
Sbjct: 60 EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYV 119
Query: 65 YNYKGTG----LSMGMMIAGWDKRG-PQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG 119
+ Y M+ + QLY +D G ++G A ++
Sbjct: 120 HAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL 179
Query: 120 YHWNLTDEEAHQLARKSIYHA 140
+T + + K IY
Sbjct: 180 QMKEMTCRDIVKEVAKIIYIV 200
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 101 bits (253), Expect = 1e-27
Identities = 27/151 (17%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+++KI +I++++ +G AD + ++ L I+V +K +C+
Sbjct: 57 EKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDF 116
Query: 64 AYNYKGTG----LSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG 119
Y G + ++IAG ++ P+LY D G ++ ++G G + +
Sbjct: 117 KQQYTQYGGVRPFGVSLLIAGVNEV-PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKE 175
Query: 120 YHWNLTDEEAHQLARKSIYHATYRDFASGGL 150
Y +L+ ++A L ++ + + +
Sbjct: 176 YRDDLSFDDAMVLGLVAMGLSIESELVPENI 206
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 98.2 bits (244), Expect = 2e-26
Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 6/154 (3%)
Query: 2 SSSSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMC 61
S + KKI+ +++++ ++AG AD + ++C + V+ L+
Sbjct: 51 SELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIG 110
Query: 62 NMAYNYKGTG----LSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLD 117
+ +G++IAG+D GP ++ S+G+ S A L+
Sbjct: 111 SKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 170
Query: 118 TGYHWN--LTDEEAHQLARKSIYHATYRDFASGG 149
E + +++ +
Sbjct: 171 RHMSEFMECNLNELVKHGLRALRETLPAEQDLTT 204
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 97.8 bits (243), Expect = 4e-26
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 5/154 (3%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S +K+ ++ND + +AG AD + Y E I V + + ++
Sbjct: 58 QDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDI 117
Query: 64 AYNYKGTG----LSMGMMIAGWDKRG-PQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDT 118
Y G + + AG+D R QLY + G SVG+ + A +L
Sbjct: 118 KQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQM 177
Query: 119 GYHWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
Y ++ ++A +LA K++ T + +
Sbjct: 178 DYKDDMKVDDAIELALKTLSKTTDSSALTYDRLE 211
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 96.8 bits (240), Expect = 6e-26
Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 19/168 (11%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGER-ISVAAASKLMCN 62
+S K+ + D ++ + G AAD + + Y + ++ +S+ +A++ + +
Sbjct: 36 NSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQH 95
Query: 63 MAYNYKGTGLSMGMMIAGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH 121
+ Y + + +IAG D+ +Y D G + + G+ + LD +
Sbjct: 96 LLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVN 155
Query: 122 W-----------------NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
+ L+ EE +L R S AT R G +
Sbjct: 156 FKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLE 203
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 97.1 bits (241), Expect = 6e-26
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S S++KIVEI+ ++ ++G AD + L E I+V + ++ +C++
Sbjct: 52 ESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDL 111
Query: 64 AYNYKGTG----------LSMGMMIAGWDKRGP-QLYYVDSDGQRIKGNVFSVGSGSVFA 112
A + + ++IAG D QL++ + G + N ++GSGS A
Sbjct: 112 ALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGA 171
Query: 113 FGVLDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGL 150
L +H +LT +EA L K +
Sbjct: 172 QAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNA 209
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 95.3 bits (236), Expect = 1e-25
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
+ +KI + D L LAG A D + L + LYEL+ G +I ++ N+
Sbjct: 35 TTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL 94
Query: 65 YNYKGTGLSMGMMIAGWDKRGP--QLYYVDSDGQRIKGNVFSVG-SGSVFAFGVLDTGYH 121
Y + +IAG D + + +D G + + F V + + +G+ ++ +
Sbjct: 95 YEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE 154
Query: 122 WNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
N+ + + +++ +A RD SG +
Sbjct: 155 PNMDPDHLFETISQAMLNAVDRDAVSGMGVI 185
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 95.9 bits (238), Expect = 2e-25
Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 6/155 (3%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+KI ++N+ + ++AG +D L + Y L+ E I +C++
Sbjct: 57 EVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDI 116
Query: 64 AYNYKGTG----LSMGMMIAGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDT 118
Y G + ++ GWDK G QLY D G +G+ S A +L
Sbjct: 117 KQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQ 176
Query: 119 GYHW-NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
Y +T + A LA K + S +
Sbjct: 177 DYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVE 211
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 94.7 bits (235), Expect = 4e-25
Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 9/159 (5%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGER-ISVAAASKLMCNM 63
S ++ K+ E+ D L G + R + R ++ + +
Sbjct: 39 STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQT 98
Query: 64 A---YNYKGTGLSMGMMIAGWD----KRGPQLYYVDSDGQRIKGNVFSVG-SGSVFAFGV 115
+ + + + +A + PQLY + DG + F V +
Sbjct: 99 LGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATA 158
Query: 116 LDTGYHWNLTDEEAHQLARKSIYHATYRDFASGGLIRGN 154
+ Y +L E A +A ++ + + +
Sbjct: 159 MRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVAS 197
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 95.2 bits (236), Expect = 5e-25
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 6/152 (3%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRL-YELRNGERISVAAASKLMCNM 63
S ++ K+ + + +G D K Y+ GE + +
Sbjct: 58 SETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKI 117
Query: 64 A----YNYKGTGLSMGMMIAGWDK-RGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDT 118
+ + ++IAG D+ G LY VD G ++G GSV A L+
Sbjct: 118 MQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEK 177
Query: 119 GYHWNLTDEEAHQLARKSIYHATYRDFASGGL 150
++ L E+A +A ++ + +F +
Sbjct: 178 RWNDELELEDAIHIALLTLKESVEGEFNGDTI 209
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 90.9 bits (225), Expect = 1e-23
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 4/151 (2%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
S+ K+ I ++ +G D K + Y L E I A + + ++
Sbjct: 57 DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASV 116
Query: 64 AYNYKGTGL----SMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG 119
Y +G + ++I GW++ P L+ D G ++G V L+
Sbjct: 117 MQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKR 176
Query: 120 YHWNLTDEEAHQLARKSIYHATYRDFASGGL 150
Y+ +L E+A A ++ + +
Sbjct: 177 YNEDLELEDAIHTAILTLKESFEGQMTEDNI 207
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 90.2 bits (223), Expect = 2e-23
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 4/151 (2%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S +KI LG G A D + + + LY+L+ I ++L+ +
Sbjct: 36 SNKFEKIFHYGHVFLGIT-GLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL 94
Query: 65 YNYKGTGLSMGMMIAGWDKRG--PQLYYVDSDGQRIKGNVFSVG-SGSVFAFGVLDTGYH 121
Y + +G ++AG + + P + D G + F V + S FG+ ++ Y
Sbjct: 95 YERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE 154
Query: 122 WNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
NL E+ + +++ +A RD SG
Sbjct: 155 PNLEPEDLFETISQALLNAADRDALSGWGAV 185
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 90.2 bits (223), Expect = 3e-23
Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 12/159 (7%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
++ I I+ + + G D + + + G + +K M N+
Sbjct: 56 DPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANL 115
Query: 64 A----YNYKGTGLSMGMMIAGWD-KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDT 118
+ L + + D + GP +Y D G + + G L+
Sbjct: 116 SQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLEN 175
Query: 119 GYHWNLTDEEAH-------QLARKSIYHATYRDFASGGL 150
+ + D + A + A +F+ L
Sbjct: 176 HFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDL 214
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 87.9 bits (217), Expect = 4e-23
Identities = 17/141 (12%), Positives = 44/141 (31%), Gaps = 8/141 (5%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
G+ +K+ ++ + + G+ + N + +V A +
Sbjct: 27 LKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDR 86
Query: 64 AYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHWN 123
+ ++ DK + + + + + ++GSG +A
Sbjct: 87 VLRR------LEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKA--LLR 138
Query: 124 LTDEEAHQLARKSIYHATYRD 144
TD A ++ K++ A
Sbjct: 139 NTDLSAREIVEKAMTIAGEIC 159
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 88.9 bits (220), Expect = 1e-22
Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 7/153 (4%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
S ++ + +I + + + G AD + + ++ + G I V K + +++
Sbjct: 62 SSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADIS 121
Query: 65 YNY----KGTGLSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTG 119
Y + L M++ G D+ GPQ+Y D G + G + L+
Sbjct: 122 QVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKK 181
Query: 120 YHWN--LTDEEAHQLARKSIYHATYRDFASGGL 150
T E+ + A + DF +
Sbjct: 182 VKKKFDWTFEQTVETAITCLSTVLSIDFKPSEI 214
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 88.2 bits (218), Expect = 2e-22
Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 9/147 (6%)
Query: 8 MKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMAYNY 67
K+ +I+ +++ + +G AD + + + L + ++V ++ + + Y
Sbjct: 59 PSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY 118
Query: 68 KGTG----LSMGMMIAGWDKR--GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYH 121
+G + +IAG+D R P+LY + G + ++G S L+ Y
Sbjct: 119 TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYD 178
Query: 122 WN---LTDEEAHQLARKSIYHATYRDF 145
T EE +L +S+
Sbjct: 179 RKEPPATVEECVKLTVRSLLEVVQTGA 205
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 87.2 bits (215), Expect = 2e-22
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
K+ ++++ +L G A D V + + K +LY++RNG +S AA+
Sbjct: 28 MKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRN 87
Query: 64 AYNYK--GTGLSMGMMIAGWD-KRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGY 120
+ T + +++AG+D GP LYY+D K + G G+ +LD Y
Sbjct: 88 LADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY 147
Query: 121 HWNLTDEEAHQLARKSIYHATYRDFASGGLIR 152
++ E A +L RK + R +
Sbjct: 148 TPTISRERAVELLRKCLEELQKRFILNLPTFS 179
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 87.3 bits (215), Expect = 2e-22
Identities = 29/158 (18%), Positives = 65/158 (41%), Gaps = 10/158 (6%)
Query: 5 SGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNMA 64
+ K ++ D + +G DC+ +++ + ++Y+ N + ++ A + ++ +
Sbjct: 37 TRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL 96
Query: 65 YNYKGTGLSMGMMIAGWDKRGPQL-YYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW- 122
Y+ + + +I G D+ G Y D G + + + GS S +LD +
Sbjct: 97 YSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFK 156
Query: 123 --------NLTDEEAHQLARKSIYHATYRDFASGGLIR 152
L+ + A +L + A RD +G +R
Sbjct: 157 NMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALR 194
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 86.6 bits (214), Expect = 6e-22
Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)
Query: 4 SSGSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCNM 63
+++KI ++D + AG AD +C+ + L + ++V ++ + ++
Sbjct: 54 DERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASL 113
Query: 64 AYNYKGTG----LSMGMMIAGWDKR-GPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDT 118
Y + + +I G+D P+LY D G ++G G+ L+
Sbjct: 114 KQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK 173
Query: 119 GYHWNL--TDEEAHQLARKSIYHATYRDF 145
Y TD+ +L K++
Sbjct: 174 NYTDEAIETDDLTIKLVIKALLEVVQSGG 202
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 79.8 bits (196), Expect = 9e-20
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 8/142 (5%)
Query: 4 SSGSMKKIVEIND-YLLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCN 62
+ +K+ ++ + +L AG AD + Y A
Sbjct: 33 MKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDK 92
Query: 63 MAYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
+ + L + G D + ++GSG +A
Sbjct: 93 VLRKLEA-MLIVMNQDTLLLVSGTGEVIEPDD------GILAIGSGGNYALAAGRALKKH 145
Query: 123 NLTDEEAHQLARKSIYHATYRD 144
A ++AR ++ A
Sbjct: 146 AGESMSASEIARAALETAGEIC 167
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 71.4 bits (174), Expect = 1e-16
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 9/142 (6%)
Query: 4 SSGSMKKIVEINDY-LLGTLAGGAADCVYWDRVLAKQCRLYELRNGERISVAAASKLMCN 62
G+ +K+ + + +L AGG AD + ++ + S +K
Sbjct: 27 MKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKL--EMHQGHLLKSAVELAKDWRT 84
Query: 63 MAYNYKGTGLSMGMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGSGSVFAFGVLDTGYHW 122
K M+I +K + + Q + + ++GSG +A
Sbjct: 85 DRALRK----LEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAAR--ALV 138
Query: 123 NLTDEEAHQLARKSIYHATYRD 144
T+ AH++ KS+ A
Sbjct: 139 ENTELSAHEIVEKSLRIAGDIC 160
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 25.6 bits (56), Expect = 1.6
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 52 SVAAASKLMCNMAYNYKGTGLSMGMMIAGWDKRGPQLYYV----DSDGQRIK 99
S A++ L +GM + DK+ P L D G +
Sbjct: 13 SEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVH 64
>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin
{Bacteriophage cp-1 [TaxId: 10747]}
Length = 149
Score = 26.0 bits (56), Expect = 2.3
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKGNVFSVGS 107
M+ + K G Y+++++G+ F+
Sbjct: 110 NMVSNEFIKSGKGWYFMNTNGELADNPSFTKEP 142
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga
maritima [TaxId: 2336]}
Length = 292
Score = 26.0 bits (57), Expect = 2.4
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 107 SGSVFAF-GVLDTGYHWNLTDEEAHQLARKSIYHATYRDFA 146
G A G+L +++EE + R+ R+
Sbjct: 52 KGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIP 92
>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 349
Score = 26.0 bits (56), Expect = 2.6
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 121 HWNLTDEEAHQLARKSIYHA 140
T+EE +L + +
Sbjct: 311 DMGFTEEEFKRLNINAAKSS 330
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 60
Score = 24.2 bits (53), Expect = 2.7
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 85 GPQLYYVDSDGQR-IKGNVFSVGSG 108
+ Y+ DG+ I+G ++ V
Sbjct: 33 NSGVLYITDDGKHIIQGPMYDVSGT 57
>d2biba1 b.109.1.1 (A:309-541) Teichoic acid phosphorylcholine
esterase Pce (LytD), C-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 233
Score = 25.4 bits (54), Expect = 4.3
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKGNV 102
G GW K + Y++ +GQ +
Sbjct: 184 GSRAVGWIKDKDKWYFLKENGQLLVNGK 211
>d1h8ga_ b.109.1.1 (A:) Choline binding domain of autolysin C-LytA
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 95
Score = 24.4 bits (53), Expect = 4.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 75 GMMIAGWDKRGPQLYYVDSDGQRIKG 100
G M GW K + YY + +G G
Sbjct: 12 GEMATGWKKIADKWYYFNEEGAMKTG 37
Score = 23.7 bits (51), Expect = 9.1
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 75 GMMIAGW---DKRGPQLYYVDSDGQRIKGNVFSVGS 107
G M++ G YY+ DG F+V
Sbjct: 53 GAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEP 88
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
yoelii [TaxId: 5861]}
Length = 357
Score = 25.2 bits (54), Expect = 4.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 121 HWNLTDEEAHQLARKSIYHA 140
H N T EE + + +
Sbjct: 323 HLNFTLEEFMIMNNWAFEKS 342
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 295
Score = 25.0 bits (53), Expect = 5.7
Identities = 1/18 (5%), Positives = 7/18 (38%)
Query: 81 WDKRGPQLYYVDSDGQRI 98
+D ++ + + +
Sbjct: 25 FDPASGTAWWFNILEREL 42
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 24.5 bits (53), Expect = 8.1
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 10/54 (18%)
Query: 120 YHW-------NLTDEEAHQLARKSIYHAT---YRDFASGGLIRGNASGQQWNQG 163
+HW NL +E Q+ K H T G + + Q
Sbjct: 210 FHWKSLQGIKNLDPKEVAQVQSKDYSHLTNDLVGAIKKGDFPKWDLYVQVLKPE 263
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.414
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,175
Number of extensions: 31244
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 51
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)