BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11709
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CHM|A Chain A, Crystal Structure Of Pci Domain From A. Thaliana Cop9
Signalosome Subunit 7 (Csn7)
Length = 169
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 216 ENASQAREDAQA-CILAALADPNTFLLHPLLTLKPVKFLEG---ELIHDLLNIFVAEKVN 271
+ AS + +A I+ A + P+ F +L L V LEG + DLL +F
Sbjct: 16 KRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAH---G 72
Query: 272 TYQDFYKQHKEYIVNKLGLDH--QENLRKMRLLTFMQLAETKTEMSFDMIQKELDL-NPN 328
T+ D Y N L H + + K++ LT + LAE+ + +D + ELD+ N
Sbjct: 73 TWGD-------YKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVR 125
Query: 329 QIEAFIIDGKIAAKVM 344
++E F+I+ + A ++
Sbjct: 126 ELEDFLINECMYAGIV 141
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 354 ENASQAREDAQA-CILAALADPNTFLLHPLLTLKPVKFLEG---ELIHDLLNIFVSEKVN 409
+ AS + +A I+ A + P+ F +L L V LEG + DLL +F
Sbjct: 16 KRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAH---G 72
Query: 410 TYQDFYKQHKEYIVNKLGLDH--QENLRKMRLLTFMQLAETKTEMSFDMIQKELDL-NPN 466
T+ D Y N L H + + K++ LT + LAE+ + +D + ELD+ N
Sbjct: 73 TWGD-------YKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVR 125
Query: 467 QIEAFIID 474
++E F+I+
Sbjct: 126 ELEDFLIN 133
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 285 VNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGK--IAAK 342
+N G+ Q ++ LLT +++A E F K +DL +Q F+IDG I
Sbjct: 914 INAKGI--QATAKEKSLLTVLEVALEMCERGFSF--KNIDLYRSQATEFVIDGNSLIPPF 969
Query: 343 VMIELLSTYTAENASQAREDAQ 364
I L T A+ +ARE+ +
Sbjct: 970 NAIPGLGTNVAQAIVRAREEGE 991
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 304 FMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDA 363
F + T +E+ FD ++KEL L DG + T A+ ++ + DA
Sbjct: 156 FPEFQATYSEL-FDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNPAD--TKLKADA 212
Query: 364 QACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLL---NIFVSEKVNTYQDFYKQHKE 420
I + F LHPLL++ + +E LIH + S+ Y+ F + E
Sbjct: 213 PGLITKWV----LFNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGE 268
Query: 421 YIV--NKLGLDHQE 432
+V +KLG+ +E
Sbjct: 269 ILVEADKLGISREE 282
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
Length = 495
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 304 FMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDA 363
F + T +E+ FD ++KEL L DG + T A+ +A DA
Sbjct: 156 FPEFQATYSEL-FDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNPADTKLKA--DA 212
Query: 364 QACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLL---NIFVSEKVNTYQDFYKQHKE 420
I + F LHPLL++ + +E LIH + S+ Y+ F + E
Sbjct: 213 PGLITKWV----LFNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGE 268
Query: 421 YIV--NKLGLDHQE 432
+V +KLG+ +E
Sbjct: 269 ILVEADKLGISREE 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,831,066
Number of Sequences: 62578
Number of extensions: 433568
Number of successful extensions: 1555
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1552
Number of HSP's gapped (non-prelim): 13
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)