Query psy11709
Match_columns 474
No_of_seqs 307 out of 789
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 16:54:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_O 26S proteasome regulato 100.0 5.9E-28 2E-32 250.9 17.8 260 66-347 58-341 (393)
2 3chm_A COP9 signalosome comple 99.9 7.7E-28 2.6E-32 221.9 5.8 118 222-347 23-145 (169)
3 3chm_A COP9 signalosome comple 99.9 9.5E-26 3.2E-30 207.9 6.0 105 361-473 24-132 (169)
4 4b4t_O 26S proteasome regulato 99.7 3.4E-18 1.2E-22 177.5 6.8 129 345-474 193-330 (393)
5 3txn_A 26S proteasome regulato 99.4 1E-10 3.6E-15 121.1 25.8 227 106-347 116-350 (394)
6 4b4t_Q 26S proteasome regulato 98.6 5.3E-06 1.8E-10 83.6 23.1 224 108-347 154-390 (434)
7 4b4t_R RPN7, 26S proteasome re 98.6 1.4E-06 4.9E-11 90.9 17.2 224 107-347 149-381 (429)
8 4b4t_P 26S proteasome regulato 98.4 1.7E-06 6E-11 90.7 12.9 207 125-347 175-393 (445)
9 3txn_A 26S proteasome regulato 98.4 4.3E-05 1.5E-09 79.0 21.9 125 349-473 209-338 (394)
10 3t5x_A PCI domain-containing p 98.2 3.8E-06 1.3E-10 79.2 10.2 143 196-347 27-181 (203)
11 3t5v_B Nuclear mRNA export pro 97.9 0.001 3.4E-08 70.0 21.9 224 104-347 141-417 (455)
12 4b4t_S RPN3, 26S proteasome re 97.4 0.0024 8E-08 68.0 15.1 201 124-347 228-436 (523)
13 4b4t_P 26S proteasome regulato 96.8 0.18 6.3E-06 52.4 22.9 80 394-473 294-381 (445)
14 4b4t_R RPN7, 26S proteasome re 95.8 0.031 1.1E-06 57.9 10.1 128 346-473 233-369 (429)
15 3t5x_A PCI domain-containing p 95.8 0.0097 3.3E-07 55.7 5.5 76 395-473 82-169 (203)
16 4b4t_Q 26S proteasome regulato 95.5 2.2 7.4E-05 42.1 22.8 80 394-473 297-378 (434)
17 4b0z_A RPN12, 26S proteasome r 93.8 1.9 6.5E-05 40.7 15.8 183 140-341 20-222 (229)
18 3t5v_B Nuclear mRNA export pro 90.4 0.33 1.1E-05 50.8 6.2 74 396-472 299-404 (455)
19 4b4t_S RPN3, 26S proteasome re 79.9 1.6 5.6E-05 46.2 5.1 76 394-472 343-423 (523)
20 4b0z_A RPN12, 26S proteasome r 70.9 8.7 0.0003 36.0 7.1 75 395-472 137-212 (229)
21 1ufm_A COP9 complex subunit 4; 68.5 3.3 0.00011 33.0 3.0 41 307-347 24-64 (84)
22 2qk2_A LP04448P; mini spindles 56.7 1.1E+02 0.0039 27.5 13.3 146 64-231 52-202 (242)
23 2p7v_B Sigma-70, RNA polymeras 53.5 12 0.00042 27.5 3.7 30 311-340 23-52 (68)
24 1ufm_A COP9 complex subunit 4; 53.1 6.2 0.00021 31.3 2.0 30 444-473 23-52 (84)
25 2qk1_A Protein STU2; STU2P, XM 52.2 1.5E+02 0.005 27.5 14.5 149 63-231 55-217 (249)
26 1ku3_A Sigma factor SIGA; heli 51.7 15 0.0005 27.5 3.9 31 311-341 28-58 (73)
27 1qgp_A Protein (double strande 48.5 14 0.00047 28.6 3.3 46 299-344 17-62 (77)
28 1tty_A Sigma-A, RNA polymerase 48.1 17 0.00058 28.2 3.9 31 311-341 36-66 (87)
29 4b4t_T 26S proteasome regulato 45.8 59 0.002 31.2 8.1 133 196-336 72-223 (274)
30 1qbj_A Protein (double-strande 45.2 20 0.00068 28.1 3.8 46 299-344 13-58 (81)
31 1w63_A Adapter-related protein 44.5 2.5E+02 0.0086 29.5 13.7 69 150-236 511-579 (618)
32 3t72_q RNA polymerase sigma fa 43.5 20 0.00069 29.1 3.7 43 311-353 37-81 (99)
33 3hug_A RNA polymerase sigma fa 43.2 19 0.00065 28.1 3.5 31 311-341 51-81 (92)
34 2o8x_A Probable RNA polymerase 41.4 23 0.00078 25.6 3.5 29 312-340 30-58 (70)
35 1oyi_A Double-stranded RNA-bin 39.5 18 0.0006 28.7 2.7 45 296-344 17-61 (82)
36 2vn2_A DNAD, chromosome replic 36.3 41 0.0014 28.2 4.8 56 286-344 26-82 (128)
37 2lfw_A PHYR sigma-like domain; 34.4 28 0.00097 29.8 3.5 30 311-340 107-136 (157)
38 2k6x_A Sigma-A, RNA polymerase 33.9 43 0.0015 25.3 4.0 30 442-471 14-48 (72)
39 1jr3_D DNA polymerase III, del 33.5 1.6E+02 0.0056 28.1 9.3 128 324-468 141-283 (343)
40 1xn7_A Hypothetical protein YH 32.7 25 0.00084 27.3 2.5 42 301-342 4-45 (78)
41 1tc3_C Protein (TC3 transposas 30.7 27 0.00092 22.8 2.2 25 313-337 21-45 (51)
42 3mzy_A RNA polymerase sigma-H 30.5 37 0.0013 28.4 3.6 30 312-341 123-152 (164)
43 2heo_A Z-DNA binding protein 1 30.4 33 0.0011 25.4 2.8 43 298-342 12-54 (67)
44 2jpc_A SSRB; DNA binding prote 30.3 46 0.0016 23.3 3.5 28 312-339 12-39 (61)
45 2y75_A HTH-type transcriptiona 30.1 39 0.0013 28.0 3.6 46 299-344 12-57 (129)
46 1qgp_A Protein (double strande 30.0 41 0.0014 25.8 3.3 34 437-470 17-50 (77)
47 2wpv_A GET4, UPF0363 protein Y 29.9 3.9E+02 0.013 25.9 13.1 57 85-142 72-128 (312)
48 2heo_A Z-DNA binding protein 1 29.1 40 0.0014 24.9 3.1 34 436-471 12-45 (67)
49 3lwf_A LIN1550 protein, putati 28.8 41 0.0014 29.6 3.6 46 299-344 28-75 (159)
50 1or7_A Sigma-24, RNA polymeras 28.2 45 0.0015 29.0 3.8 30 312-341 155-184 (194)
51 1je8_A Nitrate/nitrite respons 28.1 48 0.0017 25.3 3.5 28 312-339 35-62 (82)
52 4b4t_T 26S proteasome regulato 27.0 1.7E+02 0.0058 27.9 7.9 75 395-472 144-221 (274)
53 1xd7_A YWNA; structural genomi 26.9 41 0.0014 28.7 3.2 44 300-344 11-54 (145)
54 1x3u_A Transcriptional regulat 26.4 61 0.0021 23.9 3.8 28 312-339 30-57 (79)
55 2vgl_A Adaptor protein complex 25.6 4E+02 0.014 28.2 11.4 179 14-231 400-586 (621)
56 3t8r_A Staphylococcus aureus C 25.6 40 0.0014 28.9 2.8 44 301-344 14-59 (143)
57 2v79_A DNA replication protein 25.4 80 0.0027 26.9 4.7 56 286-344 26-82 (135)
58 3bqo_A Telomeric repeat-bindin 25.2 1.7E+02 0.0057 27.1 7.0 53 397-450 27-79 (211)
59 3bu8_A Telomeric repeat-bindin 24.9 1.5E+02 0.0053 27.7 6.7 51 397-448 21-71 (235)
60 2p7v_B Sigma-70, RNA polymeras 24.5 37 0.0013 24.8 2.1 23 449-471 23-45 (68)
61 3c57_A Two component transcrip 24.5 66 0.0023 25.2 3.8 29 312-340 41-69 (95)
62 2rnj_A Response regulator prot 24.3 52 0.0018 25.5 3.1 28 312-339 43-70 (91)
63 1qbj_A Protein (double-strande 23.6 84 0.0029 24.4 4.1 35 437-471 13-47 (81)
64 1xn7_A Hypothetical protein YH 23.5 73 0.0025 24.6 3.7 28 439-466 4-31 (78)
65 3kor_A Possible Trp repressor; 23.5 66 0.0023 27.2 3.7 42 294-341 61-102 (119)
66 1ku3_A Sigma factor SIGA; heli 23.4 41 0.0014 24.8 2.2 23 449-471 28-50 (73)
67 2x48_A CAG38821; archeal virus 23.3 48 0.0017 22.8 2.5 24 312-335 30-53 (55)
68 1p4w_A RCSB; solution structur 22.6 68 0.0023 25.7 3.5 29 312-340 48-76 (99)
69 1xsv_A Hypothetical UPF0122 pr 22.4 69 0.0024 26.2 3.6 31 311-341 39-69 (113)
70 1s7o_A Hypothetical UPF0122 pr 21.9 70 0.0024 26.3 3.6 29 312-340 37-65 (113)
71 1fse_A GERE; helix-turn-helix 21.6 86 0.0029 22.6 3.7 27 312-338 25-51 (74)
72 1x2m_A LAG1 longevity assuranc 20.5 57 0.0019 24.4 2.4 20 316-335 31-50 (64)
73 2k02_A Ferrous iron transport 20.2 29 0.00099 27.6 0.8 42 301-342 4-45 (87)
No 1
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-28 Score=250.92 Aligned_cols=260 Identities=13% Similarity=0.086 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHhccCC-------C----CcchHHHH--H
Q psy11709 66 IESVLNSIVSMLVLI-NPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEP-------T----SPMRYHVY--Y 131 (474)
Q Consensus 66 ~e~~~nlli~ll~~~-~~~~~~~~v~~l~~~l~~~~~~~~~~~~l~~L~~lfn~l~~-------~----s~~r~~v~--~ 131 (474)
.-.+|+.+|+-+... + +.+++..+|....+ ...+..++.+|..+...+.. + ...+..+| .
T Consensus 58 ~~~ly~~fi~~f~~kin---~L~lv~~~~~~~~~---~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~ 131 (393)
T 4b4t_O 58 RLRLYDNFVSKFYDKIN---QLSVVKYLLASLKD---SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDS 131 (393)
T ss_dssp CHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHH---TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHH
Confidence 356888888777654 5 34555545554433 23577899999988766521 0 11234444 3
Q ss_pred HHHHHHHhcCchhHHHhhHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHh
Q psy11709 132 HLVQIAQNADQIKSVFKDVDHLKQQFSQCP-PSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELL 210 (474)
Q Consensus 132 ~il~~a~~~~~~~~l~~~l~~l~~~l~~w~-~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L 210 (474)
+|..+.-..|++..++..+++++..++..+ +++..|.++|...+.+++. .+++..+|++.+.|+
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~---------------~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKF---------------KNDFNSFYYTSLLYL 196 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHH---------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHH---------------hhhHHHHHHHHHHHH
Confidence 444555566889999999999999999887 6778999999999999999 899999999999999
Q ss_pred cccCCCC---hhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhcccc----cHHHHHHHHhhCChhHHHHHHhhchHh
Q psy11709 211 STYTAEN---ASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGE----LIHDLLNIFVAEKVNTYQDFYKQHKEY 283 (474)
Q Consensus 211 ~t~~~~~---~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~----~l~~LL~iF~~g~l~~y~~f~~~~~~~ 283 (474)
+|++..+ ..+.+..|..+++.||.+|++|+||+|+.+|.+++|+++ |+++||.+|+.|++.+|+++.+.|.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~ 276 (393)
T 4b4t_O 197 STLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISK 276 (393)
T ss_dssp HHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHH
T ss_pred hhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Confidence 9998643 356778999999999999999999999999999999753 799999999999999999987766544
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhhc--CCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709 284 IVNKLGLDHQENLRKMRLLTFMQLAET--KTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL 347 (474)
Q Consensus 284 ~~~~~~l~~~~l~~KirLLtL~~La~~--~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl 347 (474)
+ ..++.+...+.+|||+++|++|++. .|.|||++|+++|+||.+|||.|||+||+.|++.||+
T Consensus 277 ~-~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkI 341 (393)
T 4b4t_O 277 I-PILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSI 341 (393)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCE
T ss_pred C-cchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 3 3334457789999999999999986 6899999999999999999999999999999999876
No 2
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.94 E-value=7.7e-28 Score=221.86 Aligned_cols=118 Identities=28% Similarity=0.423 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHcCCCcccchhhcCCchhhhcccc---cHHHHHHHHhhCChhHHHHHHhhchHhHHhhcCCCHHHHHHH
Q psy11709 222 REDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRK 298 (474)
Q Consensus 222 ~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~---~l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l~~~~l~~K 298 (474)
.+.|.++++.||.+|++|+||||+.+|+|++|+++ |+++||++|++|++.+|.++.+++| +|+ +.+.+|
T Consensus 23 ~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p-------~L~-~~~~~K 94 (169)
T 3chm_A 23 SEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLP-------HLS-PDQILK 94 (169)
T ss_dssp GGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSC-------CCC-HHHHHH
T ss_pred HHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhCc-------chH-HHHHHH
Confidence 35789999999999999999999999999999875 7999999999999999999866655 456 889999
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHhhCCC-hhhHHHHHH-hhhhHHHHHHHH
Q psy11709 299 MRLLTFMQLAETKTEMSFDMIQKELDLN-PNQIEAFII-DGKIAAKVMIEL 347 (474)
Q Consensus 299 irLLtL~~La~~~~~lsy~~Ia~~l~i~-~~eVE~~VI-~aI~aglv~~kl 347 (474)
||+|||++||+++|++||++|+++|+|+ .+|||.||| +||++|++.||+
T Consensus 95 lrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gki 145 (169)
T 3chm_A 95 LKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKL 145 (169)
T ss_dssp HHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 9999999999999999999999999999 899999999 999999999886
No 3
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.92 E-value=9.5e-26 Score=207.91 Aligned_cols=105 Identities=28% Similarity=0.465 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCCeeecccccCCccccccccc---cHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHH
Q psy11709 361 EDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKM 437 (474)
Q Consensus 361 ~~a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~~---~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~Ki 437 (474)
+.|.++|++||.+|++|+|||||.+|+|++|+++ |+++||++|++||+.+|.++.+.+|++ + +.+.+||
T Consensus 24 ~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p~L-------~-~~~~~Kl 95 (169)
T 3chm_A 24 EALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHL-------S-PDQILKL 95 (169)
T ss_dssp GGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSCCC-------C-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhCcch-------H-HHHHHHH
Confidence 4589999999999999999999999999999873 999999999999999999987776643 4 8899999
Q ss_pred HHHHHHHhHhcCCCCCHHHHHhhcCCC-hhhhhhhcc
Q psy11709 438 RLLTFMQLAETKTEMSFDMIQKELDLN-PNQIEAFII 473 (474)
Q Consensus 438 rlLtL~~La~~~r~lsy~~Ia~~l~i~-~~eVE~lVI 473 (474)
|+|||++||+++|++||++|+++|+|+ .+|||+|||
T Consensus 96 rlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI 132 (169)
T 3chm_A 96 KQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLI 132 (169)
T ss_dssp HHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999 789999999
No 4
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.4e-18 Score=177.51 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=110.3
Q ss_pred HHHHhhccccc---hhhHHHHHHHHHHHHhcCCCeeecccccCCcccccccc----ccHHHHHHHHhhCChhhHHHHHHh
Q psy11709 345 IELLSTYTAEN---ASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEG----ELIHDLLNIFVSEKVNTYQDFYKQ 417 (474)
Q Consensus 345 ~klL~t~~~~~---~~ea~~~a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~----~~l~~LL~iF~~G~~~~y~~~~~~ 417 (474)
..++.+++..+ ..+....|..++++||.+|++|+||+|+++|.+++|++ .|+++||++|++||+.+|.++.+.
T Consensus 193 l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~ 272 (393)
T 4b4t_O 193 LLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKV 272 (393)
T ss_dssp HHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCH
T ss_pred HHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44567777432 34777889999999999999999999999999999975 399999999999999999998777
Q ss_pred chHhHhhhcCCCHHHHHHHHHHHHHHHhHhc--CCCCCHHHHHhhcCCChhhhhhhccC
Q psy11709 418 HKEYIVNKLGLDHQENLRKMRLLTFMQLAET--KTEMSFDMIQKELDLNPNQIEAFIID 474 (474)
Q Consensus 418 ~~~~~~~~~~l~~~~~~~KirlLtL~~La~~--~r~lsy~~Ia~~l~i~~~eVE~lVId 474 (474)
|...+ +.++.+...+.+|||+++|++|++. .|.|||++|+++|+||.+|||.|||+
T Consensus 273 ~~~~~-~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~ 330 (393)
T 4b4t_O 273 QISKI-PILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMR 330 (393)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhhC-cchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHH
Confidence 65543 4444457889999999999999986 68999999999999999999999984
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.38 E-value=1e-10 Score=121.06 Aligned_cols=227 Identities=10% Similarity=0.021 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHhccCC--CCcchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH-HhH
Q psy11709 106 PVTLRVLWLLFQSLEP--TSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALL-ASK 182 (474)
Q Consensus 106 ~~~l~~L~~lfn~l~~--~s~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~-~~~ 182 (474)
..+++.+..+-..+.. ++..-..|+....++....+++..++..+....+..+....++..+..+.....-++. .
T Consensus 116 ~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~-- 193 (394)
T 3txn_A 116 TEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAAD-- 193 (394)
T ss_dssp HHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHh--
Confidence 3455556666665544 2346667777778888888999999999988888877776788888888777777777 6
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhcccc---cHH
Q psy11709 183 QYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIH 259 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~---~l~ 259 (474)
.+++..|+.+.+....+|+.....++.+.++-+++.+|...+.+++.+++..|......++ |+.
T Consensus 194 -------------~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 194 -------------ERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp -------------TSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred -------------ccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHH
Confidence 8899999999999999998765566778888999999999999999999988876655553 789
Q ss_pred HHHHHHhhCChhHHHHHHhhchHhHHhhcCC--CHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhh
Q psy11709 260 DLLNIFVAEKVNTYQDFYKQHKEYIVNKLGL--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDG 337 (474)
Q Consensus 260 ~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l--~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~a 337 (474)
+|+..|..|++..|......+...+..+.-+ ....+.++||..++..+...-+.|+++.||+.+++++++||.++++.
T Consensus 261 ~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~l 340 (394)
T 3txn_A 261 SVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQM 340 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999887764322011101 12679999999999999998888999999999999999999999999
Q ss_pred hhHHHHHHHH
Q psy11709 338 KIAAKVMIEL 347 (474)
Q Consensus 338 I~aglv~~kl 347 (474)
|..|.+.|++
T Consensus 341 I~dg~I~a~I 350 (394)
T 3txn_A 341 ILDKKFSGIL 350 (394)
T ss_dssp HHTTSSCEEE
T ss_pred HHCCCeeEEE
Confidence 9999887654
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.3e-06 Score=83.58 Aligned_cols=224 Identities=10% Similarity=0.043 Sum_probs=157.2
Q ss_pred HHHHHHHHHhccCCC--CcchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHH
Q psy11709 108 TLRVLWLLFQSLEPT--SPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYR 185 (474)
Q Consensus 108 ~l~~L~~lfn~l~~~--s~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~ 185 (474)
++.++..+....... .+....++..+.++....|++......++........++.+...+..+|.....++..
T Consensus 154 A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----- 228 (434)
T 4b4t_Q 154 SLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE----- 228 (434)
T ss_dssp HHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH-----
Confidence 444444444443332 3556677777788888888888888888877777777777778888888888888777
Q ss_pred HHhhhhccccccchHHHHHHHHHHhcccCCCCh----hhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhc-cc---cc
Q psy11709 186 LLRMQTKSSLCSKTELAAKVMIELLSTYTAENA----SQAREDAQACILAALADPNTFLLHPLLTLKPVKFL-EG---EL 257 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~----~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L-~~---~~ 257 (474)
.+++.+++++....+.+|+.... ..+.....-.++..+..+..-....++..+..... .+ .+
T Consensus 229 ----------~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (434)
T 4b4t_Q 229 ----------DKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDA 298 (434)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHH
T ss_pred ----------HHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhH
Confidence 89999999999999988865322 23333334444444444443333333333322222 22 25
Q ss_pred HHHHHHHHhhCChhHHHHHHhhchHhHHhhcC-C--CHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHH
Q psy11709 258 IHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLG-L--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFI 334 (474)
Q Consensus 258 l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~-l--~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~V 334 (474)
+..+...|..+++..|+.....+...+ .... + ....+.+.+|-..+..++..-+.++++.||+.++++.++||.|+
T Consensus 299 ~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l 377 (434)
T 4b4t_Q 299 MKAVAEAYNNRSLLDFNTALKQYEKEL-MGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKL 377 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHH-TCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHH
Confidence 788999999999999998877765443 1111 0 13467788899999999988889999999999999999999999
Q ss_pred HhhhhHHHHHHHH
Q psy11709 335 IDGKIAAKVMIEL 347 (474)
Q Consensus 335 I~aI~aglv~~kl 347 (474)
.+.|..|.+.|++
T Consensus 378 ~~lI~~~~i~a~i 390 (434)
T 4b4t_Q 378 SQMILDKIFYGVL 390 (434)
T ss_dssp HHHHHHTSSCCEE
T ss_pred HHHHhCCCcceec
Confidence 9999998776554
No 7
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.4e-06 Score=90.86 Aligned_cols=224 Identities=13% Similarity=0.080 Sum_probs=165.6
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy11709 107 VTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRL 186 (474)
Q Consensus 107 ~~l~~L~~lfn~l~~~s~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~ 186 (474)
.+++++..+...-.. +..+..++..+++++-..++...+...++.+...+..- .+++.+.++...-.-++..
T Consensus 149 ~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-~d~~~~~~lk~~~gl~~l~------ 220 (429)
T 4b4t_R 149 NAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-GDWERRNRYKTYYGIHCLA------ 220 (429)
T ss_dssp THHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-CCTHHHHHHHHHHHHGGGG------
T ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHH------
Confidence 456666666665443 36788999999999999999999999999888877653 3333333332222212222
Q ss_pred HhhhhccccccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHcCCCcccc-hhhcCCchhhhc-ccc----cHHH
Q psy11709 187 LRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLL-HPLLTLKPVKFL-EGE----LIHD 260 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f-~~Ll~~p~v~~L-~~~----~l~~ 260 (474)
.+++..|+++.+..+.+|+..+...+.+.+.-+++.|+.+++.-++ ..++..|.+... +.. ++.+
T Consensus 221 ---------~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~ 291 (429)
T 4b4t_R 221 ---------VRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISS 291 (429)
T ss_dssp ---------TSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHH
T ss_pred ---------hChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHH
Confidence 7889999999999889998777667888999999999998877665 347777777654 443 4667
Q ss_pred HHHHHhhCChhHHHH-HHhhchHhHHhhcCC--CHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhh
Q psy11709 261 LLNIFVAEKVNTYQD-FYKQHKEYIVNKLGL--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDG 337 (474)
Q Consensus 261 LL~iF~~g~l~~y~~-f~~~~~~~~~~~~~l--~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~a 337 (474)
++..|-.+++..|-. +...++..+....-+ ..+.+.+.||..++.+++.--+.|+++.+|+.++++++++|.|+.+-
T Consensus 292 l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~l 371 (429)
T 4b4t_R 292 LTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKF 371 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHH
Confidence 888888888777643 333333222111111 24789999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q psy11709 338 KIAAKVMIEL 347 (474)
Q Consensus 338 I~aglv~~kl 347 (474)
|..|.+.||+
T Consensus 372 I~~g~l~akI 381 (429)
T 4b4t_R 372 IPNKQLNCVI 381 (429)
T ss_dssp HHHTSSCEEE
T ss_pred HHcCCeEEEE
Confidence 9999877654
No 8
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.7e-06 Score=90.73 Aligned_cols=207 Identities=12% Similarity=0.111 Sum_probs=148.9
Q ss_pred chHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHH
Q psy11709 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAK 204 (474)
Q Consensus 125 ~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~ 204 (474)
.+..++...++++-..++.......+..+..-...-...+..+..+|.....++.. .+++.++|+
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~---------------e~~y~~a~~ 239 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH---------------KREYLEVAQ 239 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH---------------HCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH---------------hhhHHHHHH
Confidence 45566777777777777777777777766555555566778888898888888887 889999999
Q ss_pred HHHHHhcccCCC-ChhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhh-ccc-ccHHHHHHHHhhCChhHHHHHHhhch
Q psy11709 205 VMIELLSTYTAE-NASQAREDAQACILAALADPNTFLLHPLLTLKPVKF-LEG-ELIHDLLNIFVAEKVNTYQDFYKQHK 281 (474)
Q Consensus 205 ~~l~~L~t~~~~-~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~-L~~-~~l~~LL~iF~~g~l~~y~~f~~~~~ 281 (474)
+......+|+.. +.......-..++...+.+|..-..+.+++.+.... ++. +++.+|++.|..+++..|..+...+.
T Consensus 240 ~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 240 YLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 988888877543 332233333445555667776656676776443321 222 25889999999999999998877665
Q ss_pred HhHHhhcCC-------C--HHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709 282 EYIVNKLGL-------D--HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL 347 (474)
Q Consensus 282 ~~~~~~~~l-------~--~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl 347 (474)
..+ ....+ . -..+.+.++--.+..++.--+.|+++.||+.+++|.++||.++.+.|..|.+.||+
T Consensus 320 ~~L-~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akI 393 (445)
T 4b4t_P 320 PVL-NEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKV 393 (445)
T ss_dssp SST-TTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEE
T ss_pred HHh-cccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 444 22221 1 14566777766777777767899999999999999999999999999999777655
No 9
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.35 E-value=4.3e-05 Score=78.96 Aligned_cols=125 Identities=10% Similarity=0.110 Sum_probs=97.6
Q ss_pred hhccccchhhHHHHHHHHHHHHhcCCCeeecccccCCccccccccc---cHHHHHHHHhhCChhhHHHHHHhchHhHhhh
Q psy11709 349 STYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIHDLLNIFVSEKVNTYQDFYKQHKEYIVNK 425 (474)
Q Consensus 349 ~t~~~~~~~ea~~~a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~~---~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~ 425 (474)
.+|++...+++...++-++..++...+.+++++++..|......++ |+.+|+..|..|++..|......+...+..+
T Consensus 209 ~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D 288 (394)
T 3txn_A 209 EGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAED 288 (394)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTS
T ss_pred hcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 3555544445666677788888888888888888887765444443 8999999999999999999888775432121
Q ss_pred cCC--CHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhhcc
Q psy11709 426 LGL--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFII 473 (474)
Q Consensus 426 ~~l--~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~lVI 473 (474)
.-+ +...+.++||..+|..+...-+.|+++.||+.+++|+++||.+++
T Consensus 289 ~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~ 338 (394)
T 3txn_A 289 VIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLS 338 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHH
Confidence 111 246899999999999999988889999999999999999999875
No 10
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.25 E-value=3.8e-06 Score=79.22 Aligned_cols=143 Identities=10% Similarity=0.102 Sum_probs=106.3
Q ss_pred ccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhcccccHHHHHHHHhhCChhHHHH
Q psy11709 196 CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQD 275 (474)
Q Consensus 196 ~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~~l~~LL~iF~~g~l~~y~~ 275 (474)
.+++.+|+..+...+..++.......+..-.-++...|..-.+=.++ ++..+. ..++.+|..++..||+..|++
T Consensus 27 ~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~-ll~~~~-----~~~y~~L~~Avr~Gdl~~f~~ 100 (203)
T 3t5x_A 27 DSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVE-LLKKYH-----LMQFAEVTRAVSEGNLLLLHE 100 (203)
T ss_dssp TTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHH-HHHHTT-----CGGGHHHHHHHHHTCHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHH-HhhhCc-----hhHHHHHHHHHHhCCHHHHHH
Confidence 77899999999998887765433445455555555555543332222 221111 126889999999999999999
Q ss_pred HHhhchHhHHhhcCCCHHHHHHHHHHHHHHHhhhc------CCCcChHHHHHhhCC------ChhhHHHHHHhhhhHHHH
Q psy11709 276 FYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAET------KTEMSFDMIQKELDL------NPNQIEAFIIDGKIAAKV 343 (474)
Q Consensus 276 f~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~------~~~lsy~~Ia~~l~i------~~~eVE~~VI~aI~aglv 343 (474)
..++|..++ -+-|+ -.+.+|+|.+.+-.+... ...||+++|+.++++ +.+|||.+|.++|+.|.+
T Consensus 101 ~l~~~~~~f-~~~~~--~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~I 177 (203)
T 3t5x_A 101 ALAKHEAFF-IRCGI--FLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHV 177 (203)
T ss_dssp HHHHTHHHH-HHHTC--HHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHhHHHH-HHCCh--HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCce
Confidence 999998877 55565 257899999998888663 578999999999964 789999999999999988
Q ss_pred HHHH
Q psy11709 344 MIEL 347 (474)
Q Consensus 344 ~~kl 347 (474)
.|++
T Consensus 178 kg~I 181 (203)
T 3t5x_A 178 KGYI 181 (203)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7643
No 11
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.001 Score=69.98 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=142.2
Q ss_pred ChhhHHHHHHHHHhccCCC-C-------c-ch---HHHHHHHHHHHHhcCchhHHHhhHHHHHHhhh--cCC-CCHHHHH
Q psy11709 104 LGPVTLRVLWLLFQSLEPT-S-------P-MR---YHVYYHLVQIAQNADQIKSVFKDVDHLKQQFS--QCP-PSNEQMQ 168 (474)
Q Consensus 104 ~~~~~l~~L~~lfn~l~~~-s-------~-~r---~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~--~w~-~~~~~~~ 168 (474)
..+.+-+++...||.--.+ + | -| +.+...+.++.-+-+..+.+++.++.++.--. ..+ -+..++.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4567889999999984332 1 1 12 23334556677777888888888887766311 111 2444555
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhcc-cCCCC----h-hhHHHHHHHHHHHHHcCCCcccch
Q psy11709 169 KLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLST-YTAEN----A-SQAREDAQACILAALADPNTFLLH 242 (474)
Q Consensus 169 ~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t-~~~~~----~-~e~~~~A~~~i~~aL~~p~~f~f~ 242 (474)
.++--...++-- .+++.+|+.++...+.. +..+. . ...+....-+|...|..-.+ --.
T Consensus 221 ~Y~YYlGr~~~~---------------~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~-P~~ 284 (455)
T 3t5v_B 221 EYRYLLGRYYLL---------------NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM-VKW 284 (455)
T ss_dssp HHHHHHHHHHHH---------------TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC-BCH
T ss_pred eeeHHHHHHHHH---------------HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC-CCH
Confidence 554444444444 78899999998887775 43321 1 22333333444444443211 111
Q ss_pred hhcCCchhhhccccc-HHHHHHHHhhCChhHHHHHHhhchHhHHhhcCCCHHHHHHHHHHHHHHHhhhc----------C
Q psy11709 243 PLLTLKPVKFLEGEL-IHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAET----------K 311 (474)
Q Consensus 243 ~Ll~~p~v~~L~~~~-l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~----------~ 311 (474)
.++.-|.-..| .+ +.+|..++..||+..|+...++|..++ -+-|+ .-.+..|+|.+++-.+..+ .
T Consensus 285 ~ll~k~~~~~L--~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f-~~~gi-ly~LlerLr~~v~RnLirkv~~~~~~~~~~ 360 (455)
T 3t5v_B 285 GPLRPFLSQET--IDNWSVLYKHVRYGNIQGVSLWLRQNERHL-CARQL-LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQ 360 (455)
T ss_dssp HHHGGGSCHHH--HHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HHTTC-HHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHcccchHHH--HHHHHHHHHHHHhCCHHHHHHHHHHhHHHH-HHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12222210011 13 678999999999999999999998777 44443 1468888998865444331 3
Q ss_pred CCcChHHHHHhhC---------------------CChhhHHHHHHhhhhHHHHHHHH
Q psy11709 312 TEMSFDMIQKELD---------------------LNPNQIEAFIIDGKIAAKVMIEL 347 (474)
Q Consensus 312 ~~lsy~~Ia~~l~---------------------i~~~eVE~~VI~aI~aglv~~kl 347 (474)
..||++.|+.+++ ++.+|||-+|.++|+.|++.|++
T Consensus 361 srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyI 417 (455)
T 3t5v_B 361 NKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANC 417 (455)
T ss_dssp CEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEE
T ss_pred CeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 6899999999998 57889999999999999888654
No 12
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0024 Score=67.96 Aligned_cols=201 Identities=10% Similarity=0.051 Sum_probs=126.5
Q ss_pred cchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHH
Q psy11709 124 PMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAA 203 (474)
Q Consensus 124 ~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay 203 (474)
..+..++.-++...-..+..+.....+.+.. +-+-..++.+..+|+--....... .+++.+|+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~---------------q~~Y~eA~ 290 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAI---------------QLDYSTAN 290 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHH---------------TTCHHHHH
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHH---------------hccHHHHH
Confidence 3555566666666666666655555555442 112225667777776666666666 78899999
Q ss_pred HHHHHHhcccCCCC-hhhHHHHHHH-HHHHHHcCCCcccchhhcCCchhhh-cccccHHHHHHHHhhCChhHHHHHHhhc
Q psy11709 204 KVMIELLSTYTAEN-ASQAREDAQA-CILAALADPNTFLLHPLLTLKPVKF-LEGELIHDLLNIFVAEKVNTYQDFYKQH 280 (474)
Q Consensus 204 ~~~l~~L~t~~~~~-~~e~~~~A~~-~i~~aL~~p~~f~f~~Ll~~p~v~~-L~~~~l~~LL~iF~~g~l~~y~~f~~~~ 280 (474)
+++...++..+... +..-+..+.+ +|+.-|....+=.. .++..|..+. | .|+++|.++|..||+..|+....+|
T Consensus 291 ~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf~q~~l~~~L--~pY~~Lv~Avr~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 291 EYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPEL-SFFHQSNMQKSL--LPYYHLTKAVKLGDLKKFTSTITKY 367 (523)
T ss_dssp HHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCH-HHHTTTSCHHHH--HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCCh-HHhhchhHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 99999887554433 2223344443 34444432222111 1333333321 1 2799999999999999999999999
Q ss_pred hHhHHhhcCCCHHHHHHHHHHHHH----HHhhhcCCCcChHHHHHhhCCC-hhhHHHHHHhhhhHHHHHHHH
Q psy11709 281 KEYIVNKLGLDHQENLRKMRLLTF----MQLAETKTEMSFDMIQKELDLN-PNQIEAFIIDGKIAAKVMIEL 347 (474)
Q Consensus 281 ~~~~~~~~~l~~~~l~~KirLLtL----~~La~~~~~lsy~~Ia~~l~i~-~~eVE~~VI~aI~aglv~~kl 347 (474)
..++ .+-|.- .+..|.|.-.. ..+.-.-..||+++|+..++++ ++|+|..|-++|+.|.+.|.+
T Consensus 368 ~~~F-~~Dgty--~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~I 436 (523)
T 4b4t_S 368 KQLL-LKDDTY--QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKI 436 (523)
T ss_dssp HHHH-HHTTCT--HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEE
T ss_pred ccee-ccCChh--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 7776 333432 24444443322 2222224579999999999996 578999999999999877543
No 13
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.18 Score=52.38 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=64.2
Q ss_pred ccHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCC------C--HHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCCh
Q psy11709 394 ELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGL------D--HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNP 465 (474)
Q Consensus 394 ~~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l------~--~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~ 465 (474)
+++..|+++|..+++..|..+...+...+.++... . ...+.+.++--.|..++.--+.|+++.||+.+++|.
T Consensus 294 ~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~ 373 (445)
T 4b4t_P 294 ESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTE 373 (445)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCH
Confidence 58889999999999999998887775543121111 1 256788888888888888889999999999999999
Q ss_pred hhhhhhcc
Q psy11709 466 NQIEAFII 473 (474)
Q Consensus 466 ~eVE~lVI 473 (474)
++||.++.
T Consensus 374 ~evE~~ls 381 (445)
T 4b4t_P 374 SQTETYIS 381 (445)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 14
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.031 Score=57.91 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=94.3
Q ss_pred HHHhhccccchhhHHHHHHHHHHHHhcCCCeeecc-cccCCcccccc-cc-c---cHHHHHHHHhhCChhhHHH-HHHhc
Q psy11709 346 ELLSTYTAENASQAREDAQACILAALADPNTFLLH-PLLTLKPVKFL-EG-E---LIHDLLNIFVSEKVNTYQD-FYKQH 418 (474)
Q Consensus 346 klL~t~~~~~~~ea~~~a~~li~~Al~~p~vy~F~-eLl~~p~v~~L-~~-~---~l~~LL~iF~~G~~~~y~~-~~~~~ 418 (474)
..+.||+..+...+...+.-++..|+..++.-++. .++.-|.+... .. + ++.+++..|-.+.+..|-. ....+
T Consensus 233 e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 312 (429)
T 4b4t_R 233 DSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETY 312 (429)
T ss_dssp HHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34567887666678888999999999887766543 46666665443 33 2 5667788888888887643 44444
Q ss_pred hHhHhhhc--CCCHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhhcc
Q psy11709 419 KEYIVNKL--GLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFII 473 (474)
Q Consensus 419 ~~~~~~~~--~l~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~lVI 473 (474)
+..+..+. .-+.+.+.+.||...+..++.-.+.|+++.+|+.++++++++|.++.
T Consensus 313 ~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~ 369 (429)
T 4b4t_R 313 ANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLG 369 (429)
T ss_dssp STTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHH
Confidence 43321221 22468999999999999999999999999999999999999999874
No 15
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=95.79 E-value=0.0097 Score=55.74 Aligned_cols=76 Identities=12% Similarity=0.311 Sum_probs=62.4
Q ss_pred cHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHHHHHHHHHhHh------cCCCCCHHHHHhhcCC-----
Q psy11709 395 LIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAE------TKTEMSFDMIQKELDL----- 463 (474)
Q Consensus 395 ~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~KirlLtL~~La~------~~r~lsy~~Ia~~l~i----- 463 (474)
++.+|.+++..||+..|++..++|..++ -+-|+ -.+.+|+|.+.+-.+.. ....||+++|+.++++
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f-~~~~~--~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~ 158 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFF-IRCGI--FLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVED 158 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHH-HHHTC--HHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHH-HHCCh--HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC
Confidence 5778999999999999999999998765 33333 35789999999888866 3678999999999964
Q ss_pred -Chhhhhhhcc
Q psy11709 464 -NPNQIEAFII 473 (474)
Q Consensus 464 -~~~eVE~lVI 473 (474)
+.+|||.+|.
T Consensus 159 ~~~~evE~ila 169 (203)
T 3t5x_A 159 VDIDEVQCILA 169 (203)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 6789998863
No 16
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=2.2 Score=42.05 Aligned_cols=80 Identities=10% Similarity=0.135 Sum_probs=64.4
Q ss_pred ccHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCC--CHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhh
Q psy11709 394 ELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGL--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAF 471 (474)
Q Consensus 394 ~~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l--~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~l 471 (474)
+++..+...|..+++..|+.....+...+..+..+ ....+.+.++...+..++...+.++++.|++.++++.++||.+
T Consensus 297 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~ 376 (434)
T 4b4t_Q 297 DAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGK 376 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHH
Confidence 47788899999999999999888776543111101 2357788899999999999889999999999999999999988
Q ss_pred cc
Q psy11709 472 II 473 (474)
Q Consensus 472 VI 473 (474)
+.
T Consensus 377 l~ 378 (434)
T 4b4t_Q 377 LS 378 (434)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 17
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=93.84 E-value=1.9 Score=40.67 Aligned_cols=183 Identities=9% Similarity=0.062 Sum_probs=108.8
Q ss_pred cCchhHHHhhHHHHHHhhhcCCC-----CHH---HHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhc
Q psy11709 140 ADQIKSVFKDVDHLKQQFSQCPP-----SNE---QMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLS 211 (474)
Q Consensus 140 ~~~~~~l~~~l~~l~~~l~~w~~-----~~~---~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~ 211 (474)
.++++.+...+..++.-|...++ +.. -.|.+|..-+..... .++.+++-+++-.+-.
T Consensus 20 ~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~---------------~~D~~~F~~~~~qLk~ 84 (229)
T 4b0z_A 20 RKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQ---------------TCDIESFARYASQVIP 84 (229)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHH---------------TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHH
Confidence 34566666666666655554442 221 246666665544444 6666665444333222
Q ss_pred ccCCC---ChhhHHHHHHHHHHHHHcCCCcccchhhcC-Cchhhhcccc----cHHHHHHHHhhCChhHHHHHHhhchHh
Q psy11709 212 TYTAE---NASQAREDAQACILAALADPNTFLLHPLLT-LKPVKFLEGE----LIHDLLNIFVAEKVNTYQDFYKQHKEY 283 (474)
Q Consensus 212 t~~~~---~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~-~p~v~~L~~~----~l~~LL~iF~~g~l~~y~~f~~~~~~~ 283 (474)
-|... +.....=.+..++.. |.-.++-+|.-.+. +|.-..++++ ...+|-+.+..|++..|-...++.|.-
T Consensus 85 ~Y~~~~~~s~~~~e~~~~~LL~l-L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~ 163 (229)
T 4b0z_A 85 FYHDSLVPSSRMGLVTGLNLLYL-LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP 163 (229)
T ss_dssp HHSSCCCCCTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCG
T ss_pred HHHccCCCCccHHHHHHHHHHHH-HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccc
Confidence 23321 111222234444443 33445545543332 3332223444 357888999999999998888776521
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCC-hhhHHHHHHh---hhhHH
Q psy11709 284 IVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLN-PNQIEAFIID---GKIAA 341 (474)
Q Consensus 284 ~~~~~~l~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~-~~eVE~~VI~---aI~ag 341 (474)
. .+.=-+.+..++|.-++..+..+-+.||.+++++-|+.+ ++|++.|+-+ +|+.|
T Consensus 164 ~---~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg 222 (229)
T 4b0z_A 164 E---FSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDG 222 (229)
T ss_dssp G---GHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETT
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCC
Confidence 0 000135688899999988888887889999999999996 5789999887 56555
No 18
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=90.44 E-value=0.33 Score=50.80 Aligned_cols=74 Identities=15% Similarity=0.308 Sum_probs=58.7
Q ss_pred HHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCH-HHHHHHHHHHHHHHhHhc----------CCCCCHHHHHhhcC--
Q psy11709 396 IHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDH-QENLRKMRLLTFMQLAET----------KTEMSFDMIQKELD-- 462 (474)
Q Consensus 396 l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~-~~~~~KirlLtL~~La~~----------~r~lsy~~Ia~~l~-- 462 (474)
+..|.++...||+..|+...++|..++... | . -.+..|+|.+++-.+..+ ...||+++|+.+++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~-g--ily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~ 375 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCAR-Q--LLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLS 375 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHT-T--CHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHc-C--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhc
Confidence 678899999999999999999998765333 2 4 578899999966555442 26899999999998
Q ss_pred -------------------CChhhhhhhc
Q psy11709 463 -------------------LNPNQIEAFI 472 (474)
Q Consensus 463 -------------------i~~~eVE~lV 472 (474)
++.+|||-+|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~devEcIl 404 (455)
T 3t5v_B 376 IGPTFEDPGAQEITIYNGIHSPKNVENVL 404 (455)
T ss_dssp HCCCTTSTTCCCCCTTTSSCCSSCHHHHH
T ss_pred cCccccccccccccccccCCCHHHHHHHH
Confidence 4667999776
No 19
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.93 E-value=1.6 Score=46.24 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=55.7
Q ss_pred ccHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHHHHHHH----HHhHhcCCCCCHHHHHhhcCCCh-hhh
Q psy11709 394 ELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF----MQLAETKTEMSFDMIQKELDLNP-NQI 468 (474)
Q Consensus 394 ~~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~KirlLtL----~~La~~~r~lsy~~Ia~~l~i~~-~eV 468 (474)
.++++|.++|..||+..|.+..+.|...+..+ |. -.+..|+|.-.. ..+...-..||+++|+..++++. +|+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~D-gt--y~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eea 419 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKD-DT--YQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTV 419 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHT-TC--THHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccC-Ch--hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHH
Confidence 37999999999999999999999998765333 22 235555555433 22333356799999999999974 689
Q ss_pred hhhc
Q psy11709 469 EAFI 472 (474)
Q Consensus 469 E~lV 472 (474)
|..|
T Consensus 420 E~iV 423 (523)
T 4b4t_S 420 EYMV 423 (523)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 20
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=70.89 E-value=8.7 Score=36.05 Aligned_cols=75 Identities=8% Similarity=0.011 Sum_probs=57.8
Q ss_pred cHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCCh-hhhhhhc
Q psy11709 395 LIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNP-NQIEAFI 472 (474)
Q Consensus 395 ~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~-~eVE~lV 472 (474)
...+|-+.+..|++..|-...++.|.-...-+ .+.+..++|.-++..++..-+.||.+++++-|+.+. +|++.++
T Consensus 137 ~al~l~~al~~GnY~kff~l~~~~p~~~~~~~---~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~ 212 (229)
T 4b0z_A 137 WVISLEQNVMEGAFDKVASMIRSCNFPEFSYF---MKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLA 212 (229)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHH---HHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCccchHHHH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHH
Confidence 45667788899999999888877652100111 467889999999999988888999999999999975 5777664
No 21
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=68.46 E-value=3.3 Score=32.97 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=34.7
Q ss_pred hhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709 307 LAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL 347 (474)
Q Consensus 307 La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl 347 (474)
++.--..|+++.+|+.++++.++||.++.+.|..|.+.+|+
T Consensus 24 is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akI 64 (84)
T 1ufm_A 24 ASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFI 64 (84)
T ss_dssp HHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEE
Confidence 33347889999999999999999999999999998666543
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=56.72 E-value=1.1e+02 Score=27.51 Aligned_cols=146 Identities=9% Similarity=0.104 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHh-ccChH---HHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHhccCCC-CcchHHHHHHHHHHHH
Q psy11709 64 ADIESVLNSIVSMLV-LINPE---RAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPT-SPMRYHVYYHLVQIAQ 138 (474)
Q Consensus 64 ke~e~~~nlli~ll~-~~~~~---~~~~~v~~l~~~l~~~~~~~~~~~~l~~L~~lfn~l~~~-s~~r~~v~~~il~~a~ 138 (474)
.++..+.+.+...+. ..++. .+...+..++..+.. ......-.++..|++.+... ...|.....++..++.
T Consensus 52 ~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 52 GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK----RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345677888888875 65543 333444445444422 12344556788888887654 3577777777777766
Q ss_pred hcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhcccCCCCh
Q psy11709 139 NADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENA 218 (474)
Q Consensus 139 ~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~ 218 (474)
..+ + ...++.+-..++. -++..+......+...+... .+.......+..++.+|...-.+..
T Consensus 128 ~~~-~---~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~------------~~~~~~~~~l~~l~p~l~~~l~D~~ 189 (242)
T 2qk2_A 128 STS-L---EAQQESIVESLSN--KNPSVKSETALFIARALTRT------------QPTALNKKLLKLLTTSLVKTLNEPD 189 (242)
T ss_dssp TSC-H---HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTC------------CGGGCCHHHHHHHHHHHHHHHTSSC
T ss_pred cCC-H---HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHc------------CCCCccHHHHHHHHHHHHHHhcCCC
Confidence 543 2 2333444445543 35677888888888766540 0011223444444444433322223
Q ss_pred hhHHHHHHHHHHH
Q psy11709 219 SQAREDAQACILA 231 (474)
Q Consensus 219 ~e~~~~A~~~i~~ 231 (474)
.+.|+.|.+++..
T Consensus 190 ~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 190 PTVRDSSAEALGT 202 (242)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4566777766543
No 23
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=53.51 E-value=12 Score=27.46 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=26.3
Q ss_pred CCCcChHHHHHhhCCChhhHHHHHHhhhhH
Q psy11709 311 KTEMSFDMIQKELDLNPNQIEAFIIDGKIA 340 (474)
Q Consensus 311 ~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~a 340 (474)
....||.+||+.++++..-|..++-+|++.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 367999999999999999999998888754
No 24
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=53.06 E-value=6.2 Score=31.30 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=25.9
Q ss_pred HhHhcCCCCCHHHHHhhcCCChhhhhhhcc
Q psy11709 444 QLAETKTEMSFDMIQKELDLNPNQIEAFII 473 (474)
Q Consensus 444 ~La~~~r~lsy~~Ia~~l~i~~~eVE~lVI 473 (474)
.++.--..|+++.+|+.+++|.++||.++.
T Consensus 23 ~is~~Y~~Isl~~La~ll~ls~~~vE~~ls 52 (84)
T 1ufm_A 23 SASKLYNNITFEELGALLEIPAAKAEKIAS 52 (84)
T ss_dssp HHHHSCSEEEHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhcCeeeHHHHHHHHCcCHHHHHHHHH
Confidence 455568999999999999999999998863
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=52.23 E-value=1.5e+02 Score=27.48 Aligned_cols=149 Identities=8% Similarity=0.062 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHHH-hccChH---HHHHHHHHHHHHHhcccCCCCh-hhHHHHHHHHHhccCCC-CcchHHHHHHHHHH
Q psy11709 63 EADIESVLNSIVSML-VLINPE---RAENLILAFSEKLSKASDAKLG-PVTLRVLWLLFQSLEPT-SPMRYHVYYHLVQI 136 (474)
Q Consensus 63 eke~e~~~nlli~ll-~~~~~~---~~~~~v~~l~~~l~~~~~~~~~-~~~l~~L~~lfn~l~~~-s~~r~~v~~~il~~ 136 (474)
..++..++..+...+ ...+.. .+...+..|++.+.. .... .-.-.+|..+++.+... ...|-....++..+
T Consensus 55 ~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~---~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i 131 (249)
T 2qk1_A 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT---PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTI 131 (249)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT---TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456667788888888 455532 344555556655530 1233 45667899999998765 34566666777788
Q ss_pred HHhcCch-h--HHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccc----hHHHH-HHHHH
Q psy11709 137 AQNADQI-K--SVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSK----TELAA-KVMIE 208 (474)
Q Consensus 137 a~~~~~~-~--~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~ay-~~~l~ 208 (474)
+...+.. . .+...++.+-..++.= .+..+......+..++.. .+. ...++ +-++.
T Consensus 132 ~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~---------------~~~~~~~l~~~l~~~iip 194 (249)
T 2qk1_A 132 CKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE---------------EKDGYSTLQRYLKDEVVP 194 (249)
T ss_dssp HHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH---------------CCSCSHHHHHHHTTTHHH
T ss_pred HHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH---------------cCCcchhHHHHHHHHHHH
Confidence 8776321 1 1344555555566542 557788888999988887 432 22334 33444
Q ss_pred HhcccCCCChhhHHHHHHHHHHH
Q psy11709 209 LLSTYTAENASQAREDAQACILA 231 (474)
Q Consensus 209 ~L~t~~~~~~~e~~~~A~~~i~~ 231 (474)
.|..+-.+...+.|+.|.+++..
T Consensus 195 ~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 195 IVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Confidence 33333233334677778777654
No 26
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=51.69 E-value=15 Score=27.47 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=26.8
Q ss_pred CCCcChHHHHHhhCCChhhHHHHHHhhhhHH
Q psy11709 311 KTEMSFDMIQKELDLNPNQIEAFIIDGKIAA 341 (474)
Q Consensus 311 ~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ag 341 (474)
+...|+.+||+.++++..-|..++-+|++.-
T Consensus 28 ~~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 28 GREHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3679999999999999999999988887543
No 27
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=48.45 E-value=14 Score=28.56 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 299 MRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 299 irLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
.++|.++.--..+..+|+.+||+.++++...|...+=+-.+.|+|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4456655544446689999999999999999998877776777543
No 28
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=48.13 E-value=17 Score=28.24 Aligned_cols=31 Identities=3% Similarity=0.117 Sum_probs=27.0
Q ss_pred CCCcChHHHHHhhCCChhhHHHHHHhhhhHH
Q psy11709 311 KTEMSFDMIQKELDLNPNQIEAFIIDGKIAA 341 (474)
Q Consensus 311 ~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ag 341 (474)
+..+||.+||+.++++..-|..++-+|++.-
T Consensus 36 ~~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 36 GKPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4679999999999999999999988887543
No 29
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.78 E-value=59 Score=31.24 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=83.1
Q ss_pred ccchHHHHHHHHHHhcccCCC--C----hhhHHHHHHHHHHHHHcCCCcccchh-hcCCchh-hhcccc----cHHHHHH
Q psy11709 196 CSKTELAAKVMIELLSTYTAE--N----ASQAREDAQACILAALADPNTFLLHP-LLTLKPV-KFLEGE----LIHDLLN 263 (474)
Q Consensus 196 ~~~~~~ay~~~l~~L~t~~~~--~----~~e~~~~A~~~i~~aL~~p~~f~f~~-Ll~~p~v-~~L~~~----~l~~LL~ 263 (474)
.++.+++-+++-.+-.-|... . .....=.|.++... |...++-+|+- |-.+|.. ..++++ .-.++-.
T Consensus 72 ~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLyl-L~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~ 150 (274)
T 4b4t_T 72 TFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNL-LSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDR 150 (274)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHH-HHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHH-HHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHH
Confidence 677777666554433334321 1 11222223344332 22333445643 4345543 345544 2577888
Q ss_pred HHhhCChhHHHHHHhhc--h----HhHHhhcCCCHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCCh-hhHHHHHHh
Q psy11709 264 IFVAEKVNTYQDFYKQH--K----EYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNP-NQIEAFIID 336 (474)
Q Consensus 264 iF~~g~l~~y~~f~~~~--~----~~~~~~~~l~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~-~eVE~~VI~ 336 (474)
.+..|++..|-....+. | +++ -+.+..++|.-++..+..+-+.+|..++++-|+.+. +|+..|+-+
T Consensus 151 al~eGnY~kff~l~~~~~~p~~~~~~f-------~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 151 WLMEGSYQKAWDLLQSGSQNISEFDSF-------TDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE 223 (274)
T ss_dssp HHHHTCSHHHHHHHHTCTTCCHHHHHH-------HHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCcHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999887666553 2 122 367889999999999999888899999999999964 788888754
No 30
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=45.21 E-value=20 Score=28.07 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 299 MRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 299 irLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
.+||.++.-...+..+++.+||+.|+++...|...+-+-.+.|+|.
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3455555522224589999999999999999999887777777653
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=44.51 E-value=2.5e+02 Score=29.53 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=40.6
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhcccCCCChhhHHHHHHHHH
Q psy11709 150 VDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACI 229 (474)
Q Consensus 150 l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i 229 (474)
++-+..+++.+..++..+..+..++...+.. ..... ..+...|+.|+.+.-.+.|++|....
T Consensus 511 ~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~---------------~~~~~---~~l~~~L~~~~~~~d~evrdRA~~y~ 572 (618)
T 1w63_A 511 LDILESVLISNMSTSVTRGYALTAIMKLSTR---------------FTCTV---NRIKKVVSIYGSSIDVELQQRAVEYN 572 (618)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT---------------CSSCH---HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHh---------------CcchH---HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4455666766666777788777777766655 22222 22344455555433347788888776
Q ss_pred HHHHcCC
Q psy11709 230 LAALADP 236 (474)
Q Consensus 230 ~~aL~~p 236 (474)
...-..|
T Consensus 573 ~ll~~~~ 579 (618)
T 1w63_A 573 ALFKKYD 579 (618)
T ss_dssp HHHHTTT
T ss_pred HHHcCcH
Confidence 5543344
No 32
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=43.53 E-value=20 Score=29.10 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCcChHHHHHhhCCChhhHHHHHHhhhhHHHH--HHHHHhhccc
Q psy11709 311 KTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKV--MIELLSTYTA 353 (474)
Q Consensus 311 ~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv--~~klL~t~~~ 353 (474)
....||++||+.++++..-|....-+|++.-.- ..+.+..|-.
T Consensus 37 ~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~ 81 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSS 81 (99)
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999876532 2334555654
No 33
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.24 E-value=19 Score=28.13 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=26.6
Q ss_pred CCCcChHHHHHhhCCChhhHHHHHHhhhhHH
Q psy11709 311 KTEMSFDMIQKELDLNPNQIEAFIIDGKIAA 341 (474)
Q Consensus 311 ~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ag 341 (474)
-..+||.+||+.++++..-|...+-+|.+.-
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999988887643
No 34
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.39 E-value=23 Score=25.61 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=24.8
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhhH
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKIA 340 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~a 340 (474)
...||.+||+.++++..-|..++-+|...
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35899999999999999999888777653
No 35
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=39.53 E-value=18 Score=28.67 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 296 LRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 296 ~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
..+.++|.+.. .+. +|+.+||+.|+++...|-..+-+--+.|+|.
T Consensus 17 ~~~~~IL~lL~---~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 17 EIVCEAIKTIG---IEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVY 61 (82)
T ss_dssp HHHHHHHHHHS---SST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHHHHHHHH---HcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34566666665 344 9999999999999988888777766777554
No 36
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=36.30 E-value=41 Score=28.17 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=43.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhc-CCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 286 NKLGLDHQENLRKMRLLTFMQLAET-KTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 286 ~~~~l~~~~l~~KirLLtL~~La~~-~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
..+|+++.+.. -++.|...... ..-+|.++||+.++++..+|-..+=+-++.|++.
T Consensus 26 ~~lgLt~~e~~---vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 26 KQLGLGEGELV---LLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp TTTTCCHHHHH---HHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred HHcCCCHHHHH---HHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35678776544 56666666444 3448999999999999999999999888888665
No 37
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=34.39 E-value=28 Score=29.81 Aligned_cols=30 Identities=7% Similarity=0.178 Sum_probs=25.9
Q ss_pred CCCcChHHHHHhhCCChhhHHHHHHhhhhH
Q psy11709 311 KTEMSFDMIQKELDLNPNQIEAFIIDGKIA 340 (474)
Q Consensus 311 ~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~a 340 (474)
-..+||+|||+.+++|+.-|...+-+|.+.
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLVTEALAE 136 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 356899999999999999999888887654
No 38
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=33.92 E-value=43 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=22.9
Q ss_pred HHHhHhcCCCCCHHHHHhhcC-----CChhhhhhh
Q psy11709 442 FMQLAETKTEMSFDMIQKELD-----LNPNQIEAF 471 (474)
Q Consensus 442 L~~La~~~r~lsy~~Ia~~l~-----i~~~eVE~l 471 (474)
|+..+...+.+||++|.+.+. ++.+++|.+
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i 48 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERI 48 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHH
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCCHHHHHHH
Confidence 667777778999999999985 455666654
No 39
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=33.52 E-value=1.6e+02 Score=28.14 Aligned_cols=128 Identities=10% Similarity=0.033 Sum_probs=73.6
Q ss_pred CCChhhHHHHHHhhhhH-HH----HHHHHHhhccccchhhHHHHHHHHHHHHhcCCCeeecccccCCccccccc----cc
Q psy11709 324 DLNPNQIEAFIIDGKIA-AK----VMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLE----GE 394 (474)
Q Consensus 324 ~i~~~eVE~~VI~aI~a-gl----v~~klL~t~~~~~~~ea~~~a~~li~~Al~~p~vy~F~eLl~~p~v~~L~----~~ 394 (474)
.++.+++..||.+..+. |+ -...++....+.+...+.....+++.. .+++.... ..|..+- ..
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~--~~~~~It~------e~V~~~~~~~~~~ 212 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLL--WPDGKLTL------PRVEQAVNDAAHF 212 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHH--CTTCEECH------HHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHh--cCCCCCCH------HHHHHHHhhhhcC
Confidence 34677888898876632 31 113344555554444444444444332 12333332 3333322 24
Q ss_pred cHHHHHHHHhhCChhhHHHHHHh------chHhHhhhcCCCHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhh
Q psy11709 395 LIHDLLNIFVSEKVNTYQDFYKQ------HKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQI 468 (474)
Q Consensus 395 ~l~~LL~iF~~G~~~~y~~~~~~------~~~~~~~~~~l~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eV 468 (474)
.+++++..+..|+....-..... +|..+ -..+.+.+|.|..+......+ +-++|++.++++...+
T Consensus 213 ~if~l~~ai~~~d~~~al~~l~~l~~~g~~~~~i-------l~~l~~~~r~l~~~~~~~~~g--~~~~i~~~l~i~~~~~ 283 (343)
T 1jr3_D 213 TPFHWVDALLMGKSKRALHILQQLRLEGSEPVIL-------LRTLQRELLLLVNLKRQSAHT--PLRALFDKHRVWQNRR 283 (343)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHH-------HHHHHHHHHHHHHHHTCSSSS--CHHHHHHHHTCCSSHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHH-------HHHHHHHHHHHHHHHHHHhCC--CHHHHHHHcCCCHHHH
Confidence 89999999999999776655432 12222 245677888887776544334 7888888888876533
No 40
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=32.65 E-value=25 Score=27.34 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=33.2
Q ss_pred HHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHH
Q psy11709 301 LLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAK 342 (474)
Q Consensus 301 LLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~agl 342 (474)
|..+.++...++.++.++||+.+++++.-|..-+-+-.+.|+
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~ 45 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGK 45 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 445666677789999999999999999877777666666663
No 41
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.71 E-value=27 Score=22.84 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=21.4
Q ss_pred CcChHHHHHhhCCChhhHHHHHHhh
Q psy11709 313 EMSFDMIQKELDLNPNQIEAFIIDG 337 (474)
Q Consensus 313 ~lsy~~Ia~~l~i~~~eVE~~VI~a 337 (474)
-+|+.+||+.++|+..-|..|+-+.
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 3799999999999999999887543
No 42
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.48 E-value=37 Score=28.36 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=26.2
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhhHH
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKIAA 341 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ag 341 (474)
..+||.+||+.++++..-|...+-+|++.-
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 567999999999999999999988887543
No 43
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=30.36 E-value=33 Score=25.39 Aligned_cols=43 Identities=7% Similarity=0.170 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHH
Q psy11709 298 KMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAK 342 (474)
Q Consensus 298 KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~agl 342 (474)
+-++|.+.. ...+.++..+||+.+++|...|...+=.-...|.
T Consensus 12 ~~~IL~~L~--~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 12 EQKILQVLS--DDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp HHHHHHHHH--HHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 345555553 3456799999999999999888887655555554
No 44
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.26 E-value=46 Score=23.33 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=23.4
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhh
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKI 339 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ 339 (474)
...|+.+||+.++++..-|...+-++.+
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3469999999999999999987766654
No 45
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=30.08 E-value=39 Score=27.99 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 299 MRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 299 irLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
+++|..+.-.+.++.+|-.+||+.+++|..-|+..+-.-.++|+|.
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~ 57 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVK 57 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 4444443333335779999999999999999999988888888754
No 46
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.97 E-value=41 Score=25.79 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=25.1
Q ss_pred HHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhh
Q psy11709 437 MRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEA 470 (474)
Q Consensus 437 irlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~ 470 (474)
.++|.++.--..+..+|+.+||+.++++...|..
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~ 50 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINR 50 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHH
Confidence 4466655544445689999999999999876654
No 47
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.93 E-value=3.9e+02 Score=25.93 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcccCCCChhhHHHHHHHHHhccCCCCcchHHHHHHHHHHHHhcCc
Q psy11709 85 AENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQ 142 (474)
Q Consensus 85 ~~~~v~~l~~~l~~~~~~~~~~~~l~~L~~lfn~l~~~s~~r~~v~~~il~~a~~~~~ 142 (474)
+..+..-+++.+.+... .-....+.-|..||+.+|+.++.|.......++...+.|.
T Consensus 72 a~DLa~llvev~~~~~~-~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~ 128 (312)
T 2wpv_A 72 GTDLIFYLLEVYDLAEV-KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE 128 (312)
T ss_dssp HHHHHHHHHHHHHHTTC-CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC
Confidence 33444445565554321 1234466667799999999999999988888888877643
No 48
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=29.12 E-value=40 Score=24.94 Aligned_cols=34 Identities=6% Similarity=0.206 Sum_probs=24.6
Q ss_pred HHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhh
Q psy11709 436 KMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAF 471 (474)
Q Consensus 436 KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~l 471 (474)
+-++|.++. ...+.+|..+||+.+++|...|...
T Consensus 12 ~~~IL~~L~--~~~~~~s~~eLA~~lglsr~tv~~~ 45 (67)
T 2heo_A 12 EQKILQVLS--DDGGPVAIFQLVKKCQVPKKTLNQV 45 (67)
T ss_dssp HHHHHHHHH--HHCSCEEHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHH
Confidence 445666553 3456799999999999998766543
No 49
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=28.78 E-value=41 Score=29.60 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhc--CCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 299 MRLLTFMQLAET--KTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 299 irLLtL~~La~~--~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
.-|-+|+.||.. ++.+|-++||+.+++|..-|+..+-+--++|+|.
T Consensus 28 yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~ 75 (159)
T 3lwf_A 28 YGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVK 75 (159)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 344555555553 5679999999999999999999998888888765
No 50
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.17 E-value=45 Score=28.97 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhhHH
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKIAA 341 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ag 341 (474)
..+||.+||+.++++..-|...+-+|.+.-
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 568999999999999999999998887643
No 51
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=28.11 E-value=48 Score=25.30 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=23.5
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhh
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKI 339 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ 339 (474)
..+++.+||+.++++..-|...+-++.+
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999887766553
No 52
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.98 E-value=1.7e+02 Score=27.91 Aligned_cols=75 Identities=11% Similarity=-0.005 Sum_probs=53.9
Q ss_pred cHHHHHHHHhhCChhhHHHHHHhch--HhHhhhcCCCHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCCh-hhhhhh
Q psy11709 395 LIHDLLNIFVSEKVNTYQDFYKQHK--EYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNP-NQIEAF 471 (474)
Q Consensus 395 ~l~~LL~iF~~G~~~~y~~~~~~~~--~~~~~~~~l~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~-~eVE~l 471 (474)
.-.+|-+.+..|+|..|=....+.| .....-+ -+.+..++|.-++..++...+.+|.+++++-|+.+. +|+..+
T Consensus 144 ~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f---~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F 220 (274)
T 4b4t_T 144 YPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSF---TDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKF 220 (274)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHH---HHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHH
Confidence 3445667788899988866655432 1000000 467889999999999999989999999999999976 466654
Q ss_pred c
Q psy11709 472 I 472 (474)
Q Consensus 472 V 472 (474)
+
T Consensus 221 ~ 221 (274)
T 4b4t_T 221 A 221 (274)
T ss_dssp H
T ss_pred H
Confidence 3
No 53
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=26.89 E-value=41 Score=28.74 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=35.0
Q ss_pred HHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 300 RLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 300 rLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
-|-+|+.||..... |-++||+.++||..-++..+-+-.++|+|.
T Consensus 11 Al~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~ 54 (145)
T 1xd7_A 11 AIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILT 54 (145)
T ss_dssp HHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 34555566654335 999999999999999999999988999765
No 54
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.36 E-value=61 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhh
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKI 339 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ 339 (474)
...|+.+||+.++++..-|...+-++.+
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5689999999999999998887766654
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=25.63 E-value=4e+02 Score=28.16 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHhhhhhhcCCChhhHHHHHHHHHHHHhccChHHHHHHHHHHH
Q psy11709 14 LLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFS 93 (474)
Q Consensus 14 ~~~~d~~~El~~yl~~~~~~~~~~~~~~~~~~~l~ki~~~~~~~~~~~~eke~e~~~nlli~ll~~~~~~~~~~~v~~l~ 93 (474)
.+.++-+.|+..|+.....++. .+.+.+|- .+..-|. .+.+-+.+.++.++.....--....+..++
T Consensus 400 ~Nv~~Iv~eL~~yl~~~d~~~~--------~~~v~~I~-~la~k~~----~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~ 466 (621)
T 2vgl_A 400 SNAQQIVAEMLSYLETADYSIR--------EEIVLKVA-ILAEKYA----VDYTWYVDTILNLIRIAGDYVSEEVWYRVI 466 (621)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHH--------HHHHHHHH-HHHHHHC----SSTHHHHHHHHHHHHHHGGGSCSHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCHHHH--------HHHHHHHH-HHHHhcC----CcHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 3456666777777765322221 12233332 2222232 344677777777776542112234455666
Q ss_pred HHHhcccCCCChhhHHHHHHHHHhccCCCCcchHHHHHHHHHHHHhcCch-hH---H--HhhHHHHHHhhhcCCCCHHHH
Q psy11709 94 EKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQI-KS---V--FKDVDHLKQQFSQCPPSNEQM 167 (474)
Q Consensus 94 ~~l~~~~~~~~~~~~l~~L~~lfn~l~~~s~~r~~v~~~il~~a~~~~~~-~~---l--~~~l~~l~~~l~~w~~~~~~~ 167 (474)
+.+.+. +..+-.++..++..+... ..+..+....+=+....|.. .. + ...++.+.+.+. ..++..+
T Consensus 467 ~ii~~~-----~~~~~~~~~~l~~~l~~~-~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~--~~~~~v~ 538 (621)
T 2vgl_A 467 QIVINR-----DDVQGYAAKTVFEALQAP-ACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH--LCSVPTR 538 (621)
T ss_dssp HHHGGG-----CSCHHHHHHHHHHHHTSS-SCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT--TSCHHHH
T ss_pred HHHhCC-----hhHHHHHHHHHHHHHcCc-cchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc--cCCHHHH
Confidence 656542 334555667777777754 34544443333334444321 11 1 122333332222 2467778
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhcccCC--CChhhHHHHHHHHHHH
Q psy11709 168 QKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTA--ENASQAREDAQACILA 231 (474)
Q Consensus 168 ~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~--~~~~e~~~~A~~~i~~ 231 (474)
..+..++...+.. ..+. .......|..++. +.-.+.|++|.....-
T Consensus 539 ~~~Lta~~Kl~~~---------------~p~~---~~~i~~~l~~~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 539 ALLLSTYIKFVNL---------------FPEV---KATIQDVLRSDSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HHHHHHHHHHHHH---------------CGGG---HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------ChHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 8888888877665 3222 2234555665554 3234788888876543
No 56
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=25.58 E-value=40 Score=28.92 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=35.2
Q ss_pred HHHHHHhhhc--CCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 301 LLTFMQLAET--KTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 301 LLtL~~La~~--~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
+-+|+-|+.. ++.+|-++||+.+++|..-|+..+-+--++|+|.
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEE
Confidence 3445555543 4579999999999999999999998888888765
No 57
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.40 E-value=80 Score=26.88 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=42.6
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhc-CCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHH
Q psy11709 286 NKLGLDHQENLRKMRLLTFMQLAET-KTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVM 344 (474)
Q Consensus 286 ~~~~l~~~~l~~KirLLtL~~La~~-~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~ 344 (474)
.++|++..++ +-++-|...... ..-.|-++||+.++++..+|...+=+-+..|++.
T Consensus 26 ~~LgLs~~E~---~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~ 82 (135)
T 2v79_A 26 KQLGLNETEL---ILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLF 82 (135)
T ss_dssp HHHTCCHHHH---HHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCE
T ss_pred HHhCCCHHHH---HHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4578887664 334444444444 4668999999999999999999999999999665
No 58
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.21 E-value=1.7e+02 Score=27.06 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=36.9
Q ss_pred HHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHHHHHHHHHhHhcCC
Q psy11709 397 HDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKT 450 (474)
Q Consensus 397 ~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~KirlLtL~~La~~~r 450 (474)
+.++++|..|.+.||..+.+--...+ ...---...+.+|+|++-+++=...++
T Consensus 27 ~~~c~aFR~~r~~dFrq~rdi~eall-~~~~~~~a~~~k~i~icQfL~RI~eG~ 79 (211)
T 3bqo_A 27 LSLCRAFRDGRSEDFRRTRNSAEAII-HGLSSLTACQLRTIYICQFLTRIAAGK 79 (211)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH-HTCSCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHH-hccccccccccchHHHHHHHHHHHcCC
Confidence 46789999999999999887665553 211111345589999998877665543
No 59
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.87 E-value=1.5e+02 Score=27.68 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=35.8
Q ss_pred HHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHHHHHHHHHhHhc
Q psy11709 397 HDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAET 448 (474)
Q Consensus 397 ~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~KirlLtL~~La~~ 448 (474)
+.+.++|..|.+.||..+.+--...+...++. +..+.+++|++-+++=...
T Consensus 21 ~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~-~~~~~k~iri~QfLsRI~e 71 (235)
T 3bu8_A 21 HEALRAFRGSRYGDFRQIRDIMQALLVRPLGK-EHTVSRLLRVMQCLSRIEE 71 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCC-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhCcccc-cccchhHHHHHHHHHHHHc
Confidence 45788999999999999887655543122222 4556899999988665544
No 60
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=24.50 E-value=37 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=19.2
Q ss_pred CCCCCHHHHHhhcCCChhhhhhh
Q psy11709 449 KTEMSFDMIQKELDLNPNQIEAF 471 (474)
Q Consensus 449 ~r~lsy~~Ia~~l~i~~~eVE~l 471 (474)
....||++||+.++++..-|..+
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHH
Confidence 36799999999999998876544
No 61
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=24.46 E-value=66 Score=25.24 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=24.1
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhhH
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKIA 340 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~a 340 (474)
...|+.+||+.++++..-|...+-++.+.
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45799999999999999998887766543
No 62
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.28 E-value=52 Score=25.49 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=23.8
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhh
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKI 339 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ 339 (474)
...|+.+||+.++++..-|...+-++.+
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999888776654
No 63
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.59 E-value=84 Score=24.39 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhh
Q psy11709 437 MRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAF 471 (474)
Q Consensus 437 irlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~l 471 (474)
.++|.++.-...++.+|+.+||+.|+++...|...
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~ 47 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 34555555222245899999999999998766543
No 64
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=23.51 E-value=73 Score=24.59 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHhHhcCCCCCHHHHHhhcCCChh
Q psy11709 439 LLTFMQLAETKTEMSFDMIQKELDLNPN 466 (474)
Q Consensus 439 lLtL~~La~~~r~lsy~~Ia~~l~i~~~ 466 (474)
|..++++...++.++.++||+.+++++.
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~ 31 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQP 31 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHH
Confidence 4456667777899999999999999976
No 65
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=23.46 E-value=66 Score=27.17 Aligned_cols=42 Identities=7% Similarity=0.134 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHH
Q psy11709 294 ENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAA 341 (474)
Q Consensus 294 ~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ag 341 (474)
.+-+..+++.+ -..+ .||.+||+.++++..-|.. |-+++..|
T Consensus 61 aLs~R~eV~kl---L~~G--~syreIA~~~g~S~aTIsR-v~r~L~~g 102 (119)
T 3kor_A 61 SLSQRLQVAKM---IKQG--YTYATIEQESGASTATISR-VKRSLQWG 102 (119)
T ss_dssp HHHHHHHHHHH---HHHT--CCHHHHHHHHCCCHHHHHH-HHHHHHSS
T ss_pred HHHHHHHHHHH---HHcC--CCHHHHHHHHCCCHHHHHH-HHHHHhcC
Confidence 34444555544 2323 8999999999999988887 66777655
No 66
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=23.37 E-value=41 Score=24.85 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=19.4
Q ss_pred CCCCCHHHHHhhcCCChhhhhhh
Q psy11709 449 KTEMSFDMIQKELDLNPNQIEAF 471 (474)
Q Consensus 449 ~r~lsy~~Ia~~l~i~~~eVE~l 471 (474)
....|+.+||+.++++..-|..+
T Consensus 28 ~~~~s~~eIA~~l~is~~tV~~~ 50 (73)
T 1ku3_A 28 GREHTLEEVGAYFGVTRERIRQI 50 (73)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Confidence 36799999999999999877654
No 67
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.28 E-value=48 Score=22.82 Aligned_cols=24 Identities=8% Similarity=0.289 Sum_probs=20.3
Q ss_pred CCcChHHHHHhhCCChhhHHHHHH
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFII 335 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI 335 (474)
...|+.+||+.++++..-|-.|+-
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346999999999999998888763
No 68
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.55 E-value=68 Score=25.72 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=24.1
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhhH
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKIA 340 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~a 340 (474)
..+++.+||+.++|+..-|...+-++.+.
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35799999999999999999887766543
No 69
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.42 E-value=69 Score=26.22 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=26.5
Q ss_pred CCCcChHHHHHhhCCChhhHHHHHHhhhhHH
Q psy11709 311 KTEMSFDMIQKELDLNPNQIEAFIIDGKIAA 341 (474)
Q Consensus 311 ~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ag 341 (474)
-..+||.+||+.++++..-|..++-+|.+.-
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999888887554
No 70
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=21.92 E-value=70 Score=26.26 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhhhH
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGKIA 340 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI~a 340 (474)
...||.+||+.++++..-|..++-+|...
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45899999999999999999998888754
No 71
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.63 E-value=86 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=22.3
Q ss_pred CCcChHHHHHhhCCChhhHHHHHHhhh
Q psy11709 312 TEMSFDMIQKELDLNPNQIEAFIIDGK 338 (474)
Q Consensus 312 ~~lsy~~Ia~~l~i~~~eVE~~VI~aI 338 (474)
...|+.+||+.++++..-|...+-++.
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345999999999999998887776655
No 72
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.54 E-value=57 Score=24.38 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=17.7
Q ss_pred hHHHHHhhCCChhhHHHHHH
Q psy11709 316 FDMIQKELDLNPNQIEAFII 335 (474)
Q Consensus 316 y~~Ia~~l~i~~~eVE~~VI 335 (474)
-.+||+.|++++.+|+.|.=
T Consensus 31 r~~LA~~l~LterQVkvWFq 50 (64)
T 1x2m_A 31 LEGLSKQLDWDVRSIQRWFR 50 (64)
T ss_dssp HHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 46899999999999999964
No 73
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=20.21 E-value=29 Score=27.64 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHH
Q psy11709 301 LLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAK 342 (474)
Q Consensus 301 LLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~agl 342 (474)
|..+.++...++.++.++||+.+++++.-|..-+-+-.+.|+
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGK 45 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 344566666789999999999999999888777776666663
Done!