BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11712
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
pdb|3ME9|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
pdb|3MET|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me2
pdb|3MET|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me2
pdb|3MEU|A Chain A, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
pdb|3MEU|B Chain B, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
pdb|3MEV|A Chain A, Crystal Structure Of Sgf29 In Complex With R2ak4me3
pdb|3MEV|B Chain B, Crystal Structure Of Sgf29 In Complex With R2ak4me3
Length = 180
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNED 61
R+ +L+ SA TLPLW+GKPG KP L GAIPA ++A GD VAA V+ V D ++
Sbjct: 2 RRGVLXTLLQQSAXTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGDE 60
Query: 62 NWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
WILAEVV+Y+ +T YEV DID+ K H LSR+++IPLP +ANPET+PEALF
Sbjct: 61 QWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 115
>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3
Length = 180
Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 16 TLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNAST 75
TLPLW+GKPG KP L GAIPA ++A GD VAA V+ V D ++ WILAEVV+Y+ +T
Sbjct: 18 TLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGDEQWILAEVVSYSHAT 76
Query: 76 RTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
YEV DID+ K H LSR+++IPLP +ANPET+PEALF
Sbjct: 77 NKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 117
>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing Protein
Sgf29
Length = 159
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 16 TLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNAST 75
TLPLW+GKPG KP L GAIPA ++A GD VAA V+ V D ++ WILAEVV+Y+ +T
Sbjct: 1 TLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGDEQWILAEVVSYSHAT 59
Query: 76 RTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
YEV DID+ K H LSR+++IPLP +ANPET+PEALF
Sbjct: 60 NKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 100
>pdb|3LX7|A Chain A, Crystal Structure Of A Novel Tudor Domain-Containing
Protein Sgf29
Length = 174
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 25 GQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID 84
G KP L GAIPA ++A GD VAA V+ V D ++ WILAEVV+Y+ +T YEV DID
Sbjct: 19 GDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGDEQWILAEVVSYSHATNKYEVDDID 77
Query: 85 DVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
+ K H LSR+++IPLP +ANPET+PEALF
Sbjct: 78 EEGKERHTLSRRRVIPLPQWKANPETDPEALF 109
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 40 SHIANRGDMVAALVRNVEDNEDNWILAEVV------NYNASTRTYEVIDIDDVQKGPHQL 93
+H A R V N+ + ED W EV+ YN ST ++++ + +K L
Sbjct: 44 AHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTL 103
Query: 94 SRKQIIPLPTKR 105
+ +P P+++
Sbjct: 104 A-VGTLPFPSQK 114
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 40 SHIANRGDMVAALVRNVEDNEDNWILAEVV------NYNASTRTYEVIDIDDVQKGPHQL 93
+H A R V N+ + ED W EV+ YN ST ++++ + +K L
Sbjct: 44 AHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTL 103
Query: 94 SRKQIIPLPTK 104
+ +P P++
Sbjct: 104 A-VGTLPFPSQ 113
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 40 SHIANRGDMVAALVRNVEDNEDNWILAEVV------NYNASTRTYEVIDIDDVQKGPHQL 93
+H A R V N+ + ED W EV+ YN ST ++++ + +K L
Sbjct: 44 AHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTL 103
Query: 94 SRKQIIPLPTK 104
+ +P P++
Sbjct: 104 A-VGTLPFPSQ 113
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 40 SHIANRGDMVAALVRNVEDNEDNWILAEVV------NYNASTRTYEVIDIDDVQKGPHQL 93
+H A R V N+ + ED W EV+ YN ST ++++ + +K L
Sbjct: 44 AHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTL 103
Query: 94 SRKQIIPLPTK 104
+ +P P++
Sbjct: 104 A-VGTLPFPSQ 113
>pdb|3DL7|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 534
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 415 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 453
>pdb|2JGJ|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 535
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 415 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 453
>pdb|2JGE|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
pdb|2JGJ|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 536
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 418 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 456
>pdb|2JGE|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
Length = 533
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 415 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 453
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 40 SHIANRGDMVAALVRNVEDNEDNWILAEVV------NYNASTRTYEVIDIDDVQKGPHQL 93
+H A R V N+ + ED W EV+ YN ST ++++ + +K L
Sbjct: 46 AHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTL 105
Query: 94 SRKQIIPLPTK 104
+ +P P++
Sbjct: 106 A-VGTLPFPSQ 115
>pdb|3DL7|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 538
Score = 28.9 bits (63), Expect = 0.76, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 419 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 457
>pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholinesterase
Length = 540
Score = 28.9 bits (63), Expect = 0.76, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 421 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 459
>pdb|1KU6|A Chain A, Fasciculin 2-Mouse Acetylcholinesterase Complex
Length = 549
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|1MAH|A Chain A, Fasciculin2-Mouse Acetylcholinesterase Complex
pdb|1J06|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In The Apo
Form
pdb|1J06|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In The Apo
Form
pdb|1J07|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1J07|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1N5R|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|1N5R|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|2H9Y|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With M-(N,N, N-Trimethylammonio)trifluoroacetophenone
pdb|2H9Y|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With M-(N,N, N-Trimethylammonio)trifluoroacetophenone
pdb|2HA0|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With 4- Ketoamyltrimethylammonium
pdb|2HA0|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With 4- Ketoamyltrimethylammonium
pdb|2HA2|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Succinylcholine
pdb|2HA2|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Succinylcholine
pdb|2HA3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Choline
pdb|2HA3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Choline
pdb|2GYU|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Hi-6
pdb|2GYU|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Hi-6
pdb|2GYV|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Ortho-7
pdb|2GYV|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Ortho-7
pdb|2GYW|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Obidoxime
pdb|2GYW|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Obidoxime
pdb|2WLS|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Amts13
pdb|2WLS|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Amts13
pdb|4BC0|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC1|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
Length = 543
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|2XUF|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUF|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUG|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
pdb|2XUG|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
Length = 544
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|2XUD|A Chain A, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUD|B Chain B, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUH|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUH|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUI|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1 Wk)
pdb|2XUI|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1 Wk)
pdb|2XUJ|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUJ|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUK|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUK|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUO|A Chain A, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUO|B Chain B, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUP|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUP|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUQ|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
pdb|2XUQ|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
Length = 543
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|2HA4|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA4|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA5|A Chain A, Crystal Structure Of Mutant S203a Of Acetylcholinesterase
Complexed With Acetylthiocholine
pdb|2HA5|B Chain B, Crystal Structure Of Mutant S203a Of Acetylcholinesterase
Complexed With Acetylthiocholine
pdb|2HA6|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA6|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA7|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
pdb|2HA7|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
Length = 543
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|B Chain B, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|C Chain C, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|D Chain D, Electrophorus Electricus Acetylcholinesterase
Length = 539
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 420 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 458
>pdb|1N5M|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
pdb|1N5M|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
Length = 541
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|1MAA|A Chain A, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|B Chain B, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|C Chain C, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
Length = 547
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|2C0P|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By Tabun
pdb|2C0P|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By Tabun
pdb|2C0Q|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2C0Q|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2JEY|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2JEY|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2WHR|A Chain A, Crystal Structure Of Acetylcholinesterase In Complex With
K027
pdb|2WHR|B Chain B, Crystal Structure Of Acetylcholinesterase In Complex With
K027
pdb|4A23|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Racemic
C5685
pdb|4A23|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Racemic
C5685
pdb|4ARA|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARA|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARB|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution.
pdb|4ARB|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution
Length = 548
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|4A16|A Chain A, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|B Chain B, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|C Chain C, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|D Chain D, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
Length = 545
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 421 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 459
>pdb|2WHP|B Chain B, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin And In Complex With Hi-6
Length = 548
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|2JGF|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Fenamiphos
pdb|2JGF|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Fenamiphos
pdb|2JGI|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGI|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGK|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Fenamiphos
pdb|2JGK|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Fenamiphos
pdb|2JGL|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Vx And Sarin
pdb|2JGL|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Vx And Sarin
pdb|2JGM|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGM|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JEZ|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JEZ|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JF0|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|2JF0|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|3DL4|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|3DL4|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|2WHP|A Chain A, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin And In Complex With Hi-6
pdb|2WHQ|A Chain A, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin (Aged) In Complex With Hi-6
pdb|2WHQ|B Chain B, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin (Aged) In Complex With Hi-6
pdb|2WU3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Hi-6
pdb|2WU3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Hi-6
pdb|2WU4|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Ortho-7
pdb|2WU4|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Ortho-7
pdb|2Y2U|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2U|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2V|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
pdb|2Y2V|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
Length = 548
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 424 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 462
>pdb|1Q83|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q83|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q84|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
pdb|1Q84|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
Length = 580
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S T PLW+G P + +P DPS
Sbjct: 455 RVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPS 493
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV 80
P+H+ + MV L RN++ N D W +N N +EV
Sbjct: 62 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV 103
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV 80
P+H+ + MV L RN++ N D W +N N +EV
Sbjct: 63 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV 104
>pdb|1F8U|A Chain A, Crystal Structure Of Mutant E202q Of Human
Acetylcholinesterase Complexed With Green Mamba Venom
Peptide Fasciculin-ii
Length = 583
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S + PLW+G P + IP DPS
Sbjct: 424 RVYAYVFEHRASTLSWPLWMGVPHGYEIEFIFGIPLDPS 462
>pdb|2X8B|A Chain A, Crystal Structure Of Human Acetylcholinesterase Inhibited
By Aged Tabun And Complexed With Fasciculin-Ii
Length = 583
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S + PLW+G P + IP DPS
Sbjct: 424 RVYAYVFEHRASTLSWPLWMGVPHGYEIEFIFGIPLDPS 462
>pdb|3LII|A Chain A, Recombinant Human Acetylcholinesterase
pdb|3LII|B Chain B, Recombinant Human Acetylcholinesterase
Length = 540
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S + PLW+G P + IP DPS
Sbjct: 421 RVYAYVFEHRASTLSWPLWMGVPHGYEIEFIFGIPLDPS 459
>pdb|1B41|A Chain A, Human Acetylcholinesterase Complexed With Fasciculin-Ii,
Glycosylated Protein
Length = 539
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S + PLW+G P + IP DPS
Sbjct: 420 RVYAYVFEHRASTLSWPLWMGVPHGYEIEFIFGIPLDPS 458
>pdb|4EY4|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In The Apo State
pdb|4EY4|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In The Apo State
pdb|4EY5|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Huperzine A
pdb|4EY5|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Huperzine A
pdb|4EY6|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Galantamine
pdb|4EY6|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Galantamine
pdb|4EY7|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Donepezil
pdb|4EY7|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Donepezil
pdb|4EY8|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Fasciculin-2
Length = 542
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPS 40
R AY+ ++S + PLW+G P + IP DPS
Sbjct: 423 RVYAYVFEHRASTLSWPLWMGVPHGYEIEFIFGIPLDPS 461
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKP-AALVGAIPADPSHIANR 45
R S MK + S ++P + G +K A+ +PADP H+A R
Sbjct: 254 RYSEGMKRVLKSFGSIPEFSGATVEKVNQAMCKKVPADPEHLAAR 298
>pdb|2VK5|A Chain A, The Structure Of Clostridium Perfringens Nani Sialidase
And Its Catalytic Intermediates
pdb|2VK6|A Chain A, The Structure Of Clostridium Perfringens Nani Sialidase
And Its Catalytic Intermediates
pdb|2VK7|A Chain A, The Structure Of Clostridium Perfringens Nani Sialidase
And Its Catalytic Intermediates
pdb|2VK7|B Chain B, The Structure Of Clostridium Perfringens Nani Sialidase
And Its Catalytic Intermediates
Length = 452
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQI 98
P + N ++ V +D+ NW + E N N ++I+ + QL+ Q+
Sbjct: 241 PVYYTNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQV 300
Query: 99 IPLP 102
+ +P
Sbjct: 301 VEMP 304
>pdb|2BF6|A Chain A, Atomic Resolution Structure Of The Bacterial Sialidase
Nani From Clostridium Perfringens In Complex With
Alpha-Sialic Acid (Neu5ac)
Length = 449
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQI 98
P + N ++ V +D+ NW + E N N ++I+ + QL+ Q+
Sbjct: 241 PVYYTNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQV 300
Query: 99 IPLP 102
+ +P
Sbjct: 301 VEMP 304
>pdb|4GOT|A Chain A, Crystal Structure Of A Putative Methionine-Binding
Lipoprotein (Bsu32730) From Bacillus Subtilis Subsp.
Subtilis Str. 168 At 1.95 A Resolution
Length = 249
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 79 EVID--IDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
E +D + D++K P L K++ P T +A E +A+F
Sbjct: 137 ETVDATLKDIKKNPKNLEFKKVAPELTAKAYENKEGDAVF 176
>pdb|2IHM|A Chain A, Polymerase Mu In Ternary Complex With Gapped 11mer Dna
Duplex And Bound Incoming Nucleotide
pdb|2IHM|B Chain B, Polymerase Mu In Ternary Complex With Gapped 11mer Dna
Duplex And Bound Incoming Nucleotide
Length = 360
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 2 RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMV 49
++S+ M + + S L G P + AAL GA+P P+ A R D+V
Sbjct: 243 QRSSTMDVFERSFCIL----GLPQPQQAALAGALPPCPTWKAVRVDLV 286
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNY 71
+H+A GDMV ++ ED ++ E+ Y
Sbjct: 433 THLAGAGDMVTMIIARELGLEDRYLAEEIKKY 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,842,398
Number of Sequences: 62578
Number of extensions: 142297
Number of successful extensions: 278
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 42
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)