BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11712
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29 homolog OS=Mus musculus GN=Ccdc101 PE=2
SV=1
Length = 293
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
MR+ M +L+ SA TLPLW+GKPG KP L GAIPA ++A GD VAA V+ VE +E
Sbjct: 114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVEGDE 173
Query: 61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
WILAEVV+Y+ +T YEV DID+ K H LSR++IIPLP +ANPET+PEALF
Sbjct: 174 -QWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALF 228
>sp|P0C606|SGF29_RAT SAGA-associated factor 29 homolog OS=Rattus norvegicus GN=Ccdc101
PE=1 SV=1
Length = 293
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
MR+ M +L+ SA TLPLW+GKPG KP L GAIPA ++A GD VAA V+ VE +E
Sbjct: 114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVEGDE 173
Query: 61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
WILAEVV+Y+ +T YEV DID+ K H LSR++IIPLP +ANPET+PEALF
Sbjct: 174 -QWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALF 228
>sp|Q96ES7|SGF29_HUMAN SAGA-associated factor 29 homolog OS=Homo sapiens GN=CCDC101 PE=1
SV=1
Length = 293
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
MR+ M +L+ SA TLPLW+GKPG KP L GAIPA ++A GD VAA V+ V D +
Sbjct: 114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGD 172
Query: 61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
+ WILAEVV+Y+ +T YEV DID+ K H LSR+++IPLP +ANPET+PEALF
Sbjct: 173 EQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 228
>sp|Q5ZL38|SGF29_CHICK SAGA-associated factor 29 homolog OS=Gallus gallus GN=CCDC101 PE=2
SV=1
Length = 293
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
MR+ M +L+ SA TLPLW+GKPG KP L GA+PA ++A GD VAA V+ V D +
Sbjct: 114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAMPAAGDYVAKPGDKVAARVKAV-DGD 172
Query: 61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
+ WILAEVV+Y+ + YEV DID+ K H LSR+++IPLP +ANPET+PEALF
Sbjct: 173 EQWILAEVVSYSHAANKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 228
>sp|Q00706|STCK_EMENI Putative sterigmatocystin biosynthesis fatty acid synthase subunit
beta OS=Emericella nidulans (strain FGSC A4 / ATCC 38163
/ CBS 112.46 / NRRL 194 / M139) GN=stcK PE=3 SV=2
Length = 1914
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 33 GAIPADPSHIAN--RGDMVAALVRNVEDNEDNWILAEVVNYNASTRTY 78
G + ADPS I + D + LVR V ++ +L EVVNYN +R Y
Sbjct: 1729 GMVAADPSRIRSDFTEDRLIELVRLV--SQATGVLLEVVNYNVHSRQY 1774
>sp|Q5RBE5|FCL_PONAB GDP-L-fucose synthase OS=Pongo abelii GN=TSTA3 PE=2 SV=1
Length = 321
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV 80
P+H+ + MV L RN++ N D W +N N +EV
Sbjct: 63 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHINDNVLHSAFEV 104
>sp|P23591|FCL_MOUSE GDP-L-fucose synthase OS=Mus musculus GN=Tsta3 PE=2 SV=3
Length = 321
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV 80
P+H+ + MV L RN++ N D W +N N +EV
Sbjct: 63 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHINDNVLHSAFEV 104
>sp|Q8K3X2|FCL_CRIGR GDP-L-fucose synthase OS=Cricetulus griseus GN=TSTA3 PE=2 SV=1
Length = 321
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV 80
P+H+ + MV L RN++ N D W +N N +EV
Sbjct: 63 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHINDNVLHSAFEV 104
>sp|A2BJZ8|IF2P_HYPBU Probable translation initiation factor IF-2 OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=infB PE=3 SV=1
Length = 612
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 47 DMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRA 106
++ A L R D IL +N +TYE I+I ++ P ++ +I +P RA
Sbjct: 89 ELFANLRRRGGSVADFAILVVDINEGFQPQTYESIEILRQRRVPFVVAANKIDKIPGWRA 148
Query: 107 NPET 110
NP+T
Sbjct: 149 NPDT 152
>sp|Q5VUA4|ZN318_HUMAN Zinc finger protein 318 OS=Homo sapiens GN=ZNF318 PE=1 SV=2
Length = 2279
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 18 PLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNW 63
PL+ G P L GAI A S I N+G MV ++ + N W
Sbjct: 411 PLYSGHPS---LPLSGAIAAFASEIENKGTMVETALKEPQGNLYQW 453
>sp|Q6F175|SYI_MESFL Isoleucine--tRNA ligase OS=Mesoplasma florum (strain ATCC 33453 /
NBRC 100688 / NCTC 11704 / L1) GN=ileS PE=3 SV=1
Length = 908
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 47 DMVAALVRNVE-----DNEDNWILAE-VVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIP 100
+ +AA+ N+E N+ +ILA +VN A +E +I D KGP + K P
Sbjct: 242 NQMAAVGENIEYNIVKANDRKFILASSLVNKVAEQIGWETFEILDTLKGPEIVGVKYAHP 301
Query: 101 LPTKRANP 108
L ++ NP
Sbjct: 302 LYEQKINP 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,985,954
Number of Sequences: 539616
Number of extensions: 1873202
Number of successful extensions: 3748
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3733
Number of HSP's gapped (non-prelim): 16
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)