Query psy11712
Match_columns 123
No_of_seqs 94 out of 105
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:02:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mea_A SAGA-associated factor 100.0 7.3E-44 2.5E-48 274.6 11.2 109 12-121 14-122 (180)
2 3mp6_A MBP, SGF29, maltose-bin 99.8 8.7E-21 3E-25 159.2 8.4 75 40-121 385-463 (522)
3 4a4f_A SurviVal of motor neuro 96.8 0.0094 3.2E-07 37.7 8.0 60 37-102 3-62 (64)
4 2equ_A PHD finger protein 20-l 96.5 0.017 5.9E-07 38.1 8.0 57 38-103 5-61 (74)
5 1mhn_A SurviVal motor neuron p 96.3 0.025 8.5E-07 35.0 7.3 55 42-102 3-57 (59)
6 3pnw_C Tudor domain-containing 96.1 0.01 3.5E-07 39.1 5.2 64 34-103 9-72 (77)
7 2d9t_A Tudor domain-containing 96.0 0.045 1.5E-06 35.9 7.8 59 39-103 6-64 (78)
8 1g5v_A SurviVal motor neuron p 95.4 0.059 2E-06 36.5 6.9 58 40-103 8-65 (88)
9 3s6w_A Tudor domain-containing 95.4 0.078 2.7E-06 32.0 6.8 53 43-101 2-54 (54)
10 3fdr_A Tudor and KH domain-con 94.9 0.19 6.4E-06 33.2 8.1 55 41-102 26-80 (94)
11 2eqk_A Tudor domain-containing 93.8 0.36 1.2E-05 32.8 7.6 56 40-102 19-74 (85)
12 2ldm_A Uncharacterized protein 92.4 0.015 5.2E-07 39.2 0.0 55 42-105 6-60 (81)
13 3p8d_A Medulloblastoma antigen 93.1 0.57 2E-05 30.3 7.4 53 42-103 6-58 (67)
14 3qii_A PHD finger protein 20; 92.6 0.61 2.1E-05 31.6 7.3 57 38-103 17-73 (85)
15 2diq_A Tudor and KH domain-con 92.1 0.54 1.8E-05 31.8 6.6 55 41-102 31-85 (110)
16 4b9w_A TDRD1, tudor domain-con 91.0 1.5 5.2E-05 32.4 8.6 55 42-103 65-119 (201)
17 2wac_A CG7008-PA; unknown func 90.6 1.5 5.2E-05 32.0 8.3 54 41-102 50-103 (218)
18 3mp6_A MBP, SGF29, maltose-bin 88.8 0.72 2.5E-05 38.2 5.8 66 40-110 455-521 (522)
19 4b9x_A TDRD1, tudor domain-con 88.4 2 6.9E-05 32.3 7.7 54 42-102 65-118 (226)
20 3mea_A SAGA-associated factor 87.5 2.7 9.3E-05 31.8 7.8 61 40-104 114-179 (180)
21 3ntk_A Maternal protein tudor; 85.9 4.7 0.00016 29.0 8.1 52 42-102 47-98 (169)
22 3h8z_A FragIle X mental retard 83.3 7.1 0.00024 27.9 8.0 64 39-104 57-120 (128)
23 2hqx_A P100 CO-activator tudor 82.1 6.8 0.00023 29.4 7.9 55 40-102 63-117 (246)
24 2dig_A Lamin-B receptor; tudor 80.8 9.3 0.00032 24.8 8.2 56 41-103 11-66 (68)
25 2eqj_A Metal-response element- 78.7 10 0.00035 24.5 6.7 44 37-85 8-51 (66)
26 4hcz_A PHD finger protein 1; p 78.4 8.2 0.00028 24.4 6.0 39 42-85 3-41 (58)
27 2g3r_A Tumor suppressor P53-bi 75.7 5.7 0.00019 28.6 5.3 52 43-102 5-59 (123)
28 3bdl_A Staphylococcal nuclease 68.2 22 0.00074 30.2 8.2 54 41-102 410-463 (570)
29 2l8d_A Lamin-B receptor; DNA b 67.7 22 0.00074 23.0 8.3 57 40-103 7-63 (66)
30 2e5q_A PHD finger protein 19; 63.1 25 0.00085 22.5 5.7 54 39-100 4-57 (63)
31 3sd4_A PHD finger protein 20; 58.1 31 0.001 21.4 6.2 37 39-80 9-45 (69)
32 2ro0_A Histone acetyltransfera 49.3 56 0.0019 21.8 6.7 52 24-83 7-60 (92)
33 2e5p_A Protein PHF1, PHD finge 47.4 55 0.0019 21.2 7.3 54 40-101 7-60 (68)
34 1ssf_A Transformation related 47.2 46 0.0016 24.7 5.8 53 43-103 9-64 (156)
35 2lcc_A AT-rich interactive dom 45.0 33 0.0011 22.1 4.2 32 40-73 3-34 (76)
36 2eqm_A PHD finger protein 20-l 43.9 66 0.0023 21.1 6.1 36 40-80 17-52 (88)
37 2xk0_A Polycomb protein PCL; t 43.6 64 0.0022 20.9 6.7 37 41-84 14-50 (69)
38 2m0o_A PHD finger protein 1; t 40.1 70 0.0024 21.2 5.2 40 40-84 24-63 (79)
39 2f5k_A MORF-related gene 15 is 38.5 58 0.002 22.2 4.9 27 40-72 20-46 (102)
40 2rnz_A Histone acetyltransfera 34.3 62 0.0021 21.8 4.4 34 42-81 25-60 (94)
41 2eko_A Histone acetyltransfera 33.7 36 0.0012 22.6 3.1 44 39-83 6-51 (87)
42 2l89_A PWWP domain-containing 32.0 1.1E+02 0.0039 20.3 6.1 57 39-102 2-68 (108)
43 2vb2_X Copper protein, cation 31.2 46 0.0016 21.8 3.3 25 41-68 60-84 (88)
44 2qcp_X Cation efflux system pr 30.7 48 0.0016 21.2 3.3 25 41-68 52-76 (80)
45 1wgs_A MYST histone acetyltran 27.3 1.5E+02 0.0052 20.7 5.7 27 41-72 11-37 (133)
46 2ffg_A YKUJ; structural genomi 26.3 37 0.0013 22.9 2.1 26 68-93 38-64 (87)
47 3ask_A E3 ubiquitin-protein li 26.0 1.7E+02 0.0057 22.6 6.1 29 43-75 3-31 (226)
48 2gfu_A DNA mismatch repair pro 25.4 1.6E+02 0.0053 20.2 5.4 60 39-104 19-87 (134)
49 2f8v_T Telethonin; sarcomere, 24.4 28 0.00096 26.0 1.4 23 84-106 74-96 (167)
50 2l55_A SILB,silver efflux prot 23.3 77 0.0026 20.4 3.2 28 41-70 46-73 (82)
51 2eve_A Hypothetical protein ps 23.0 83 0.0028 23.2 3.7 70 43-119 41-129 (157)
52 2qqr_A JMJC domain-containing 22.4 1.3E+02 0.0043 21.1 4.4 39 42-87 5-43 (118)
53 1u3o_A Huntingtin-associated p 22.3 84 0.0029 20.7 3.3 29 38-68 31-59 (82)
54 2k6p_A Uncharacterized protein 22.1 1.5E+02 0.0052 18.5 4.5 47 33-86 32-86 (92)
55 3llr_A DNA (cytosine-5)-methyl 21.3 2.3E+02 0.008 20.3 6.1 59 37-102 11-75 (154)
56 3oym_A PFV integrase, P42IN; p 20.1 2.8E+02 0.0095 21.2 6.4 56 42-104 319-378 (395)
No 1
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=100.00 E-value=7.3e-44 Score=274.62 Aligned_cols=109 Identities=54% Similarity=0.899 Sum_probs=103.4
Q ss_pred hcccccceeecCCCCCCCCccccccCCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCcee
Q psy11712 12 SSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPH 91 (123)
Q Consensus 12 ~~a~~lPlw~gk~~~~ppplcGaip~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~ 91 (123)
++|+|||||+|||+++|||||||||+++++++++|++|||+++..+++ ++||||+|++|+.++++|||+|+|+||+++|
T Consensus 14 ~~~~~lplw~gk~~~~~p~lcGa~p~~~~~~~~~G~~VAakvk~~~~~-~~WILa~Vv~~~~~~~rYeV~D~d~eg~~~~ 92 (180)
T 3mea_A 14 YFQGTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEVDDIDEEGKERH 92 (180)
T ss_dssp CSTTCCCBCCCCTTCCCCTTBTTCCCCTTCCCCTTCEEEEEEECCC---EEEEEEEEEEEETTTTEEEEEECCTTCCEEE
T ss_pred hcccccccccCCCCCCCCCccccccCCCCcccCCCCEEEEEcCCCCCC-ccEEEEEEEEEcCCCCEEEEecCCCCCceeE
Confidence 589999999999999999999999999999999999999999976555 7999999999999999999999999999899
Q ss_pred EecCCceeeCCCCCCCCCCCCCCCCCCCCC
Q psy11712 92 QLSRKQIIPLPTKRANPETEPEALFPIGSV 121 (123)
Q Consensus 92 ~ls~~~IIPLP~~ka~P~t~p~AlFp~g~~ 121 (123)
++|+++|||||+|++||++++.++|++|+.
T Consensus 93 ~~s~~~IIPLP~~~a~p~t~~~~~f~~G~~ 122 (180)
T 3mea_A 93 TLSRRRVIPLPQWKANPETDPEALFQKEQL 122 (180)
T ss_dssp EEEGGGEEECCSBBCCTTTCGGGSCCTTCE
T ss_pred EeCHHHEEECCCcCCCcccCccccCCCCCE
Confidence 999999999999999999999999999984
No 2
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=99.83 E-value=8.7e-21 Score=159.19 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=62.4
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecC--CCCC--ceeEecCCceeeCCCCCCCCCCCCCCC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID--DVQK--GPHQLSRKQIIPLPTKRANPETEPEAL 115 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~D--ee~k--~r~~ls~~~IIPLP~~ka~P~t~p~Al 115 (123)
+..+++|++|||+++..+++ ++||||+|++|+++++||||+|+| |+++ ++|+||+++|||||. ++|+++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~-~~wi~~~~~~~~~~~~~y~v~d~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~ 457 (522)
T 3mp6_A 385 NAPILVGSEVAYKPRRGSAD-GEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELLLIPP------GFPTKN 457 (522)
T ss_dssp CCCBCTTCEEEECCC------CCEEEEEEEEEETTTTEEEEEECSCBTTBTTCEEEEECGGGEEEECS------SCCCCC
T ss_pred ccccCCCCEEEEecCCCCCC-CCEEEEEEEEEeCCCCEEEEeCCCCCCCCCCCeeEEccHHHEEECCC------CCcccC
Confidence 66789999999999976555 899999999999999999999994 5543 589999999999992 678899
Q ss_pred CCCCCC
Q psy11712 116 FPIGSV 121 (123)
Q Consensus 116 Fp~g~~ 121 (123)
|++|+.
T Consensus 458 ~~~~~~ 463 (522)
T 3mp6_A 458 YPPGTK 463 (522)
T ss_dssp CCTTCE
T ss_pred CCCCCE
Confidence 999974
No 3
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.80 E-value=0.0094 Score=37.70 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 37 ADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 37 ~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
++.....++||.+.|+-..+ ..|--|+|.+.+.+++.|+|.=+|=.. +-+++.++|-||+
T Consensus 3 ~~~~~~~~vGd~c~A~~s~D----g~wYrA~I~~v~~~~~~~~V~fvdYGn--~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 3 TQPTHSWKVGDKCMAVWSED----GQCYEAEIEEIDEENGTAAITFAGYGN--AEVTPLLNLKPVE 62 (64)
T ss_dssp SCCSSCCCTTCEEEEECTTT----SSEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGEECCS
T ss_pred CCcCCCCCCCCEEEEEECCC----CCEEEEEEEEEcCCCCEEEEEEEecCC--EEEEeHHHcEeCC
Confidence 45567899999999999643 689999999998778899999888532 4678888888886
No 4
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.017 Score=38.06 Aligned_cols=57 Identities=21% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 38 DPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 38 ~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
+.....++||.|.|+-. + ..|--|+|.+.+.+ +.|.|.=+|- ..-+++.++|-|||.
T Consensus 5 ~~~~~~kvGd~clA~ws-D----g~~Y~A~I~~v~~~-~~~~V~f~Dy---n~e~v~~~~lrplp~ 61 (74)
T 2equ_A 5 SSGFDFKAGEEVLARWT-D----CRYYPAKIEAINKE-GTFTVQFYDG---VIRCLKRMHIKAMPE 61 (74)
T ss_dssp CSCCCCCTTCEEEEECS-S----SSEEEEEEEEESTT-SSEEEEETTS---CEEEECGGGEECCCG
T ss_pred cCCCCCCCCCEEEEECC-C----CCEEEEEEEEECCC-CEEEEEEecC---CeEEecHHHCeeCCh
Confidence 34578999999999986 3 68999999998744 7899976664 456899999999995
No 5
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.27 E-value=0.025 Score=35.04 Aligned_cols=55 Identities=11% Similarity=0.017 Sum_probs=45.5
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
..++|+.|+|+-..+ ..|--|+|.+.+.+++.|+|.=+|=.. .-+++.++|-|||
T Consensus 3 ~~~~G~~c~A~~s~D----g~wYrA~I~~i~~~~~~~~V~f~DYGn--~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSED----GCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTT----SCEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCC----CCEEEEEEEEEcCCCCEEEEEEEcCCC--EEEEcHHHeeCCC
Confidence 578999999998743 689999999998767899998888432 4578889999998
No 6
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.13 E-value=0.01 Score=39.10 Aligned_cols=64 Identities=27% Similarity=0.230 Sum_probs=48.6
Q ss_pred cccCCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 34 AIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 34 aip~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
.++.+.....++|+.++|+-..+ ..|--|+|.+.+.+++.|+|.=+|=.. .-+++.++|-|||.
T Consensus 9 ~~~~e~~~~~kvGd~C~A~ys~D----g~wYRA~I~~i~~~~~~~~V~fvDYGN--~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 9 SIPMEYAKMWKPGDECFALYWED----NKFYRAEVEALHSSGMTAVVKFIDYGN--YEEVLLSNIKPIQT 72 (77)
T ss_dssp --CHHHHTTCCTTCEEEEEETTT----TEEEEEEEEEECTTSSEEEEEETTTCC--EEEEEGGGEECC--
T ss_pred ccchhhcCCCCcCCEEEEEECCC----CCEEEEEEEEEeCCCCEEEEEEEcCCC--eEEEeHHHeEECCh
Confidence 34444445689999999999643 689999999998777899999888543 46789999999993
No 7
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=95.96 E-value=0.045 Score=35.86 Aligned_cols=59 Identities=24% Similarity=0.154 Sum_probs=47.7
Q ss_pred CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
..+..++|+.|+|+-..+ ..|--|+|++.+.+.++|+|.=+|=.. .-+++.++|-|||.
T Consensus 6 ~~~~~~~G~~c~A~~s~D----g~wYRA~I~~i~~~~~~~~V~fiDYGN--~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 6 SGKVWKPGDECFALYWED----NKFYRAEVEALHSSGMTAVVKFTDYGN--YEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCCCTTCEEEEECTTT----CCEEEEEEEEECSSSSEEEEEETTTTE--EEEEEGGGEEECCC
T ss_pred CccCCCcCCEEEEEECCC----CCEEEEEEEEEeCCCCEEEEEEEcCCC--eEEEcHHHeEeCCH
Confidence 345789999999998742 689999999997667899999988543 35788889999983
No 8
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=95.43 E-value=0.059 Score=36.47 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=46.1
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
....++||.|.|+-..+ ..|--|.|.+.+.+.+.|.|.=+|=.. .-+++.++|.|||.
T Consensus 8 ~~~~kvGd~C~A~ys~D----g~wYrA~I~~i~~~~~~~~V~fiDYGN--~E~V~~~~Lrp~~~ 65 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSED----GCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPIC 65 (88)
T ss_dssp -CCCCSSCEEEEECTTT----CCEEEEEEEEEETTTTEEEEEETTTCC--EEEEEGGGCBCCC-
T ss_pred cCCCCCCCEEEEEECCC----CCEEEEEEEEecCCCCEEEEEEecCCC--EEEEcHHHcccCCh
Confidence 34689999999999743 689999999998777899998877443 34788889999873
No 9
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=95.42 E-value=0.078 Score=32.01 Aligned_cols=53 Identities=26% Similarity=0.164 Sum_probs=39.3
Q ss_pred CCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeC
Q psy11712 43 ANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPL 101 (123)
Q Consensus 43 ~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPL 101 (123)
.++||.++|+-..+ ..|--|+|.+.+.+++.|+|.=+|=.. .-+++.+.|-||
T Consensus 2 wk~G~~c~A~~s~D----g~wYrA~I~~i~~~~~~~~V~fvDYGn--~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWED----NKFYRAEVEALHSSGMTAVVKFIDYGN--YEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTT----TEEEEEEEEEC--CCSEEEEEETTTCC--EEEEEGGGEECC
T ss_pred CCCCCEEEEEECCC----CCEEEEEEEEEeCCCCEEEEEEEccCC--eEEEeHHHEEEC
Confidence 47899999998643 689999999987777899999888543 345666666554
No 10
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=94.92 E-value=0.19 Score=33.21 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=44.0
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
+..++|+.|||+...+ ..|--|+|++.. +++.++|.=+|=.. .-+++.++|-+||
T Consensus 26 ~~~~~G~~c~a~~~~d----~~wyRA~I~~~~-~~~~~~V~fvDyGn--~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTN----GSWYRARVLGTL-ENGNLDLYFVDFGD--NGDCPLKDLRALR 80 (94)
T ss_dssp CCCCTTCEEEEEETTT----TEEEEEEEEEEC-TTSCEEEEETTTCC--EEEECGGGCEECC
T ss_pred CCCCCCCEEEEEECCC----CeEEEEEEEEEC-CCCeEEEEEEcCCC--eEEEEHHHhhhcC
Confidence 5689999999998632 689999999985 45789999998654 3467778888887
No 11
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.84 E-value=0.36 Score=32.77 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=44.3
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
....+.|+.|||+...+ .+|--|+|.+... .+.-||.=+|=..+ -+++-.++=|||
T Consensus 19 ~~~~k~g~~vaak~~d~----n~WyRakV~~v~~-~~~veVl~~DyGn~--~~V~~~~LR~L~ 74 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDK----NQWRRGQIIRMVT-DTLVEVLLYDVGVE--LVVNVDCLRKLE 74 (85)
T ss_dssp CCCCCSSCEEEEECSSS----CCEEEEEEEEECS-SSEEEEECTTTCCE--EEEETTTEEECC
T ss_pred ccCccCCCEEEEEeCCC----CeEEEEEEEEecC-CCeEEEEEEccCCE--EEEEccccccCC
Confidence 45679999999999842 5899999999764 45599999996653 366677899986
No 12
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=92.41 E-value=0.015 Score=39.23 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=44.5
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCCCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKR 105 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~~k 105 (123)
..++||+|.|+-. + ..|--|+|.+.+. ++.|+|.=+| | ..-+++.++|.|||+.+
T Consensus 6 ~~kvGd~clAkws-D----g~wY~A~I~~v~~-~~~y~V~F~D--G-n~E~V~~s~LrPl~~~~ 60 (81)
T 2ldm_A 6 EFQINEQVLASWS-D----SRFYPAKVTAVNK-DGTYTVKFYD--G-VVQTVKHIHVKAFSKDQ 60 (81)
Confidence 4788999999977 3 6899999999874 4689998777 4 35688889999999654
No 13
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=93.14 E-value=0.57 Score=30.33 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=43.5
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
..+.||+|-|+= ++ ..|-=|+|.+.+.+ +.|+|.=.| | ..-+|..+.|.|+|+
T Consensus 6 ~~~vGd~vmArW-~D----~~yYpA~I~si~~~-~~Y~V~F~d--G-~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 6 EFQINEQVLACW-SD----CRFYPAKVTAVNKD-GTYTVKFYD--G-VVQTVKHIHVKAFSK 58 (67)
T ss_dssp CCCTTCEEEEEC-TT----SCEEEEEEEEECTT-SEEEEEETT--S-CEEEEEGGGEEECC-
T ss_pred ccccCCEEEEEc-CC----CCEeeEEEEEECCC-CeEEEEEeC--C-ceEEEeHHHcccCCc
Confidence 578999999998 22 68999999999754 679998766 3 357999999999995
No 14
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=92.63 E-value=0.61 Score=31.63 Aligned_cols=57 Identities=18% Similarity=0.073 Sum_probs=44.2
Q ss_pred CCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 38 DPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 38 ~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
+.....+.||+|-|+= ++ ..|-=|+|.+++.+ ..|.|.=-| | ..-+|....|.|||.
T Consensus 17 ~~~~~f~vGd~VlArW-~D----~~yYPAkI~sV~~~-~~YtV~F~D--G-~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 17 GGSSEFQINEQVLACW-SD----CRFYPAKVTAVNKD-GTYTVKFYD--G-VVQTVKHIHVKAFSK 73 (85)
T ss_dssp ----CCCTTCEEEEEC-TT----SCEEEEEEEEECTT-SEEEEEETT--S-CEEEEEGGGEEECC-
T ss_pred cCCcccccCCEEEEEe-CC----CCEeeEEEEEECCC-CeEEEEEeC--C-CeEEecHHHcccCCh
Confidence 3456789999999999 32 68999999999754 679997766 3 457999999999995
No 15
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.08 E-value=0.54 Score=31.84 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=42.5
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
+..++|+.|||+...+ ..|--|+|++... ++.|+|.=+|=.. .-+++.++|-+||
T Consensus 31 ~~~~~G~~c~a~~~~d----~~wyRA~V~~~~~-~~~~~V~fvDyGn--~e~v~~~~Lr~l~ 85 (110)
T 2diq_A 31 LTVHVGDIVAAPLPTN----GSWYRARVLGTLE-NGNLDLYFVDFGD--NGDCPLKDLRALR 85 (110)
T ss_dssp CCCCTTCEEEECCTTT----CSCEEEEECCCCS-SSCEEEEETTTCC--EEEECGGGCEECC
T ss_pred CCCCCCCEEEEEECCC----CeEEEEEEEEECC-CCeEEEEEEeCCC--eEEEehHHhhcCc
Confidence 4578999999988632 6899999999864 4789999888554 3467777777776
No 16
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=90.96 E-value=1.5 Score=32.36 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=43.0
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
..+.|+.++|+...+ ..|--|+|++.. +++.++|.=+|=.. .-+++.++|-+||.
T Consensus 65 ~~~~G~~c~a~~~~d----~~wyRa~V~~~~-~~~~~~V~~vDyG~--~~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGD----GNWYRALVKEIL-PSGNVKVHFVDYGN--VEEVTTDQLQAILP 119 (201)
T ss_dssp CCCTTCEEEEEETTT----TEEEEEEEEEEC-TTSCEEEEETTTCC--EEEECGGGEEECCG
T ss_pred CCCCCCEEEEEECCC----CeEEEEEEEEEC-CCCeEEEEEEccCC--EEEEEHHHhccChH
Confidence 467899999998743 689999999975 45679999999654 34677888888873
No 17
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=90.61 E-value=1.5 Score=31.97 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=42.6
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
+..++|+.|+|+...+ ..|.-|+|++... +.++|.=+|-.. .-+++.++|-+||
T Consensus 50 ~~~~~g~~c~a~~~~d----~~wyRa~V~~v~~--~~~~V~~vDyG~--~~~v~~~~l~~l~ 103 (218)
T 2wac_A 50 YTPKRGDLVAAQFTLD----NQWYRAKVERVQG--SNATVLYIDYGN--KETLPTNRLAALP 103 (218)
T ss_dssp CCCCTTCEEEEECTTT----CCEEEEEEEEEET--TEEEEEETTTCC--EEEEEGGGEEECC
T ss_pred ccCCcCCEEEEEECCC----CeEEEEEEEEecC--CeEEEEEEecCC--eEEEchHHcccCC
Confidence 4578999999998732 6899999999864 889998888654 3467777788877
No 18
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=88.79 E-value=0.72 Score=38.20 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=49.0
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCC-CceeEecCCceeeCCCCCCCCCC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQ-KGPHQLSRKQIIPLPTKRANPET 110 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~-k~r~~ls~~~IIPLP~~ka~P~t 110 (123)
...+++|+.|-|.-..+ ...--|+|++- ..+++|.|.=+||++ .....++||.|||+|.--|||.+
T Consensus 455 ~~~~~~~~~v~a~~p~t----t~fy~a~v~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 521 (522)
T 3mp6_A 455 TKNYPPGTKVLARYPET----TTFYPAIVIGT-KRDGTCRLRFDGEEEVDKETEVTRRLVLPSPTALANLAR 521 (522)
T ss_dssp CCCCCTTCEEEEECTTC----SEEEEEEEEEE-CTTSCEEEEETTC----CCEEECGGGEEECHHHHC----
T ss_pred ccCCCCCCEEEEECCCC----cceEeEEEecC-CCCCeEEEEecCCCCCCccccccceeEEecCchhccccc
Confidence 45689999999998853 67889999995 566789998887663 34478999999999987777753
No 19
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=88.42 E-value=2 Score=32.29 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=42.3
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
..++|+.++|+...+ ..|--|.|++.. +++.++|.=+|-.. .-+++.++|-+||
T Consensus 65 ~~~~G~~c~a~~~~d----~~WyRa~V~~~~-~~~~~~V~~vDyGn--~~~v~~~~l~~l~ 118 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGD----GNWYRALVKEIL-PSGNVKVHFVDYGN--VEEVTTDQLQAIL 118 (226)
T ss_dssp CCCTTCEEEEEETTT----TEEEEEEEEEEC-SSSEEEEECTTTCC--EEEEEGGGEECCC
T ss_pred CCCCCCEEEEEECCC----CeEEEEEEEEEC-CCCeEEEEEEecCC--EEEEEHHHhccCh
Confidence 457899999998743 689999999975 45679999998654 3467777888887
No 20
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=87.52 E-value=2.7 Score=31.80 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=42.8
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCC-CCceEEeecCCCCCc----eeEecCCceeeCCCC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNAS-TRTYEVIDIDDVQKG----PHQLSRKQIIPLPTK 104 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~-~~~YeV~D~Dee~k~----r~~ls~~~IIPLP~~ 104 (123)
...+.+|++|-|+-..+ ...--|+|++--.+ .+.|.|.=+||+... .-.+++|.||++|..
T Consensus 114 ~~~f~~G~~VLAlYP~T----T~FY~A~V~~~p~~~~~~y~L~FEdde~~dG~sp~~~V~~RyVv~~ke~ 179 (180)
T 3mea_A 114 EALFQKEQLVLALYPQT----TCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEP 179 (180)
T ss_dssp GGSCCTTCEEEEECTTS----SEEEEEEEEECCSSTTCCEEEEEBCTTSTTSBCCCEEECGGGEEEC---
T ss_pred cccCCCCCEEEEeCCCC----ceeeEEEEecCCCCCCCcEEEEEcCCCccCCCCCCcEecceEEEccCCC
Confidence 34589999999998853 67899999995332 368998755543221 257899999999854
No 21
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=85.87 E-value=4.7 Score=29.00 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=38.7
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
..++|+.+||+...+ +.|--|+|.+... ++.++|.=+|=...+. + ++|-+||
T Consensus 47 ~~~~G~~c~A~~~~d----~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~--v--~~lr~l~ 98 (169)
T 3ntk_A 47 DLKEGALCVAQFPED----EVFYRAQIRKVLD-DGKCEVHFIDFGNNAV--T--QQFRQLP 98 (169)
T ss_dssp CCCTTCEEEEEETTT----TEEEEEEEEEECS-TTCEEEEETTTTEEEE--E--SCEECCC
T ss_pred CCCCCCEEEEEECCC----CcEEEEEEEEECC-CCEEEEEEEecCCeEE--h--hhhhccC
Confidence 578999999998642 6899999999865 3479999888544332 2 5666666
No 22
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=83.29 E-value=7.1 Score=27.89 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=40.2
Q ss_pred CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCCC
Q psy11712 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTK 104 (123)
Q Consensus 39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~~ 104 (123)
.+..+..||+|-++.+.++.+.--|-+|+|+..- .+.|-|.=..=+..-.=.++..+|=|+|..
T Consensus 57 ~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k--g~f~~V~y~~~~~~~~EiV~~~rlR~~n~~ 120 (128)
T 3h8z_A 57 YNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK--GDFYVIEYAACDATYNEIVTLERLRPVNPN 120 (128)
T ss_dssp ---CCCTTCEEEEEECC---CCCEEEEEEEEEEE--TTEEEEEETTC----CEEECGGGEEECCCC
T ss_pred cccCCCCCCEEEEEecCCCCCcCccEEEEEEEee--CCEEEEEEcCCCCCcceEEehhheEeCCCC
Confidence 3456899999999999765443469999999964 466776633312222346778888888754
No 23
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=82.11 E-value=6.8 Score=29.36 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=41.7
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
.+..++|+.++|+.. + ..|--|.|++... .+.++|.=+|-.. .-+++.++|-+||
T Consensus 63 ~~~~~~G~~c~a~~~-d----~~wyRa~V~~~~~-~~~~~V~~vDyGn--~~~v~~~~lr~l~ 117 (246)
T 2hqx_A 63 SYAPRRGEFCIAKFV-D----GEWYRARVEKVES-PAKIHVFYIDYGN--REVLPSTRLGTLS 117 (246)
T ss_dssp TCCCCTTCEEEEECT-T----SCEEEEEEEEEEE-TTEEEEEETTTCC--EEEECGGGEECCC
T ss_pred CCCCCCCCEEEEEcC-C----CCEEEEEEEEEcC-CCeEEEEEEeCCC--eEEEeHHHhhcCC
Confidence 345679999999987 2 6899999999864 4689998888543 3466677777776
No 24
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=80.79 E-value=9.3 Score=24.84 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=46.6
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
.....||.|-||=.++ ..+.=|+|++++..+.-|+|.==| | ..-+|..+.|=|+|.
T Consensus 11 ~~f~vgd~VmaRW~Gd----~~yYparItSits~~~~Y~VkfKd--g-T~e~L~~kDIKp~~~ 66 (68)
T 2dig_A 11 RKFADGEVVRGRWPGS----SLYYEVEILSHDSTSQLYTVKYKD--G-TELELKENDIKSGPS 66 (68)
T ss_dssp CSSCSSCEEEEECTTT----CCEEEEEEEEEETTTTEEEEECTT--S-CEEEEETTTEECCCC
T ss_pred eEeecCCEEEEEccCC----ccceEEEEEEeccCCceEEEEecC--C-CEEEechhccccCCC
Confidence 4688999999998842 679999999999999999997666 2 246899999999984
No 25
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=78.72 E-value=10 Score=24.46 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=35.3
Q ss_pred CCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCC
Q psy11712 37 ADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDD 85 (123)
Q Consensus 37 ~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~De 85 (123)
.......+.|+.|-|+=.. ....+|.|++.+..++.|-|.=.|.
T Consensus 8 ~~~~~~f~vGddVLA~wtD-----Gl~Y~gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 8 KKPACKFEEGQDVLARWSD-----GLFYLGTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp CCCCCCSCTTCEEEEECTT-----SCEEEEEEEEEETTTTEEEEEETTT
T ss_pred ccccccccCCCEEEEEEcc-----CcEEEeEEEEEccCCcEEEEEEccC
Confidence 3344579999999999852 6899999999998899998875553
No 26
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=78.38 E-value=8.2 Score=24.39 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=33.2
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDD 85 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~De 85 (123)
.+..|+.|-|+-+. ....|+.|+..+.+.++|-|.=.|.
T Consensus 3 ~f~~GedVLarwsD-----G~fYlGtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 3 RLWEGQDVLARWTD-----GLLYLGTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp SCCTTCEEEEECTT-----SCEEEEEEEEEETTTTEEEEEETTS
T ss_pred ccccCCEEEEEecC-----CCEEeEEEEEEecCCCEEEEEEcCC
Confidence 57899999999884 6899999999999888998865553
No 27
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=75.74 E-value=5.7 Score=28.59 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCcee---eCC
Q psy11712 43 ANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQII---PLP 102 (123)
Q Consensus 43 ~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~II---PLP 102 (123)
...|-.|-|+-..+ ..|--++|++. ..+++|.|.=.|... -++..++|| |||
T Consensus 5 ~~~G~rV~AkWsdn----~~yYpG~V~~~-~~~~ky~V~FdDg~~---~~v~~k~iiv~d~ip 59 (123)
T 2g3r_A 5 SFVGLRVVAKWSSN----GYFYSGKITRD-VGAGKYKLLFDDGYE---CDVLGKDILLCDPIP 59 (123)
T ss_dssp CCTTCEEEEECTTT----CCEEEEEEEEE-EETTEEEEEETTSCE---EEEEGGGEECCSSCC
T ss_pred cccceEEEEEeccC----CcCcccEEEEe-ccCCeEEEEEcCCCe---eEeecceEEEecccC
Confidence 45788999998842 57999999995 679999996555443 467789999 999
No 28
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=68.15 E-value=22 Score=30.24 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=44.0
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
+..++|+.++|+.. + ..|--|.|++... .+.|+|.=+|-.. .-+++.++|-+||
T Consensus 410 ~~~~~G~~c~a~~~-d----~~wyRa~I~~v~~-~~~~~V~fvDyGn--~e~v~~~~Lr~l~ 463 (570)
T 3bdl_A 410 YAPRRGEFCIAKFV-D----GEWYRARVEKVES-PAKIHVFYIDYGN--REVLPSTRLGTLS 463 (570)
T ss_dssp CCCCTTCEEEEECT-T----SCEEEEEEEEEEE-TTEEEEEETTTCC--EEEECGGGEECCC
T ss_pred cCCCcCCEEEEEEC-C----CCEEEEEEEEEcC-CCeEEEEEEeCCC--eEEEEHHHCccCC
Confidence 45789999999987 2 6899999999875 6789999888654 3468888888887
No 29
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=67.72 E-value=22 Score=22.95 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
......||.|-||=.++ ..+-=|+|++++..+.-|+|.==| | ..-+|..+.|=|+..
T Consensus 7 ~~~~~vgd~VmaRW~Gd----~~yYparI~Si~s~~~~Y~V~fKd--g-T~e~L~~kDIkp~~s 63 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPGS----VLYYEVQVTSYDDASHLYTVKYKD--G-TELALKESDIRLQSS 63 (66)
T ss_dssp SSSSCSSCEEEEECTTS----SCEEEEEEEEEETTTTEEEEEETT--S-CEEEEEGGGEECSSS
T ss_pred ceEeecCCEEEEEcCCC----ccceEEEEEEeccCCceEEEEecC--C-CEEeechhccccchh
Confidence 34688999999999432 679999999999999999998666 2 235788888887743
No 30
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.14 E-value=25 Score=22.49 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=39.7
Q ss_pred CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceee
Q psy11712 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIP 100 (123)
Q Consensus 39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIP 100 (123)
+...+..|+.|-|+=+. ....|+.|+..+....+|-|.=.|.- .+.+..+.|-+
T Consensus 4 g~~~f~eGqdVLarWsD-----GlfYlgtV~kV~~~~~~ClV~FeD~s---~~wv~~kdi~~ 57 (63)
T 2e5q_A 4 GSSGLTEGQYVLCRWTD-----GLYYLGKIKRVSSSKQSCLVTFEDNS---KYWVLWKDIQH 57 (63)
T ss_dssp SCCCCCTTCEEEEECTT-----SCEEEEEECCCCSTTSEEEEEETTSC---EEEEEGGGEEC
T ss_pred CccceecCCEEEEEecC-----CCEEEEEEEEEecCCCEEEEEEccCc---eeEEEeecccc
Confidence 45678999999999773 68999999999988888888655543 24444444433
No 31
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=58.07 E-value=31 Score=21.40 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=26.9
Q ss_pred CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEE
Q psy11712 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV 80 (123)
Q Consensus 39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV 80 (123)
....+++|.++-|.-.. ..|-.|+|+..+...++|-|
T Consensus 9 ~~~~F~vGmkLEa~d~~-----~p~~~AtV~~v~~~~~~~~V 45 (69)
T 3sd4_A 9 RGISFEVGAQLEARDRL-----KNWYPAHIEDIDYEEGKVLI 45 (69)
T ss_dssp TTCCCSTTCEEEEECTT-----SCEEEEEEEEEETTTTEEEE
T ss_pred CCCCcCCCCEEEEEECC-----CCccccEEEEEeccCCEEEE
Confidence 46679999999998664 45788999987544555543
No 32
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=49.30 E-value=56 Score=21.80 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=32.3
Q ss_pred CCCCCCCccccccCCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCC--CceEEeec
Q psy11712 24 PGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNAST--RTYEVIDI 83 (123)
Q Consensus 24 ~~~~ppplcGaip~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~--~~YeV~D~ 83 (123)
..+.+++.-+.+.. ...+..|++|-++-. ..|-.|+|++..... ..|=|-=.
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~vG~kv~v~~~------~~~y~AkIl~ir~~~~~~~YyVHY~ 60 (92)
T 2ro0_A 7 DGKEEPGIAKKINS--VDDIIIKCQCWVQKN------DEERLAEILSINTRKAPPKFYVHYV 60 (92)
T ss_dssp CSSCCCCEEECCSC--TTSCCTTCEEEEEET------TEEEEEEEEEEECSSSSCEEEEEET
T ss_pred cCCCCCcccccccc--cccccCCCEEEEEEC------CEEEEEEEEEEEEcCCCcEEEEEeC
Confidence 34445444443333 235899999998831 689999999976433 34555433
No 33
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.44 E-value=55 Score=21.15 Aligned_cols=54 Identities=19% Similarity=0.082 Sum_probs=41.4
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPL 101 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPL 101 (123)
.-.+..|+.|-|+=+. ....|+.|+..+....+|-|.=.|.- .+.+..+.|-++
T Consensus 7 ~~~f~eGqdVLarWsD-----GlfYlGtV~kV~~~~~~ClV~FeD~s---~~wv~~kdi~~~ 60 (68)
T 2e5p_A 7 GPRLWEGQDVLARWTD-----GLLYLGTIKKVDSAREVCLVQFEDDS---QFLVLWKDISPA 60 (68)
T ss_dssp CCCCCTTCEEEEECTT-----SSEEEEEEEEEETTTTEEEEEETTTE---EEEEETTTEECC
T ss_pred CcccccCCEEEEEecC-----CcEEEeEEEEEecCCcEEEEEEccCC---eeeeeeeccccc
Confidence 3578999999999883 68999999999988888888655543 356666666554
No 34
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=47.16 E-value=46 Score=24.71 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=37.8
Q ss_pred CCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCce---eeCCC
Q psy11712 43 ANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQI---IPLPT 103 (123)
Q Consensus 43 ~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~I---IPLP~ 103 (123)
...|.+|-|+-... ..|--++|.++ ..+++|+|.=.|... -++.-++| +|||.
T Consensus 9 ~~iG~rVfArWsd~----~yyYpG~V~~~-~~~~~Y~V~FdDG~~---k~v~~~divv~~~LP~ 64 (156)
T 1ssf_A 9 SFVGLRVVAKWSSN----GYFYSGKITRD-VGAGKYKLLFDDGYE---CDVLGKDILLCDPIPL 64 (156)
T ss_dssp CSTTCEEEECSSCS----SEEEEEEEEEC-CTTTEEEEECTTSCE---EEEETTTEEEECCSCS
T ss_pred chhccEEEEEcCCC----CcccccEEEEe-ccCCEEEEEEcCCCe---eEeeccceEEEeccCC
Confidence 48899999998842 56779999995 688999996555443 24443334 48884
No 35
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=44.98 E-value=33 Score=22.06 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=24.0
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNA 73 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~ 73 (123)
...+..|++|-++-.. + ....|-.|+|++...
T Consensus 3 ~~~~~vGekV~~~~~d-~-k~~~~y~AkIl~i~~ 34 (76)
T 2lcc_A 3 MEPCLTGTKVKVKYGR-G-KTQKIYEASIKSTEI 34 (76)
T ss_dssp CCCSSTTCEEEEEEEE-T-TEEEEEEEEEEEEEE
T ss_pred ccccCCCCEEEEEeCC-C-CCCCEEEEEEEEEEc
Confidence 3468899999999763 1 115899999999753
No 36
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=43.95 E-value=66 Score=21.09 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.6
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEE
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV 80 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV 80 (123)
...+++|.+|-|.-.. ..|..|.|+..+...++|.|
T Consensus 17 ~~~F~vGmkLEA~D~~-----~~~~~a~i~~v~~~~~~v~V 52 (88)
T 2eqm_A 17 GITFEIGARLEALDYL-----QKWYPSRIEKIDYEEGKMLV 52 (88)
T ss_dssp SCCCCSSCEEEEECTT-----SCEEEEEEEEEETTTTEEEE
T ss_pred cCcCCCCCEEEEEcCC-----CCeeEEEEEEEeccCCEEEE
Confidence 4568999999888653 57888888876665666655
No 37
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=43.56 E-value=64 Score=20.86 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=28.8
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecC
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID 84 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~D 84 (123)
.....|+-|-|+-+. ....|+.||. ...++|-|.=.|
T Consensus 14 ~~~~~geDVL~rw~D-----G~fYLGtIVd--~~~~~ClV~FeD 50 (69)
T 2xk0_A 14 VTYALQEDVFIKCND-----GRFYLGTIID--QTSDQYLIRFDD 50 (69)
T ss_dssp CCCCTTCEEEEECTT-----SCEEEEEEEE--ECSSCEEEEETT
T ss_pred cccccCCeEEEEecC-----CCEEEEEEEe--cCCceEEEEecC
Confidence 779999999999763 6899999976 456777775444
No 38
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=40.12 E-value=70 Score=21.20 Aligned_cols=40 Identities=15% Similarity=0.000 Sum_probs=33.6
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecC
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID 84 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~D 84 (123)
.-.+..|+.|-|+-+. ....|+.|+..+...++|-|.=.|
T Consensus 24 ~~~f~eGeDVLarwsD-----GlfYLGTI~kV~~~~e~ClV~F~D 63 (79)
T 2m0o_A 24 RPRLWEGQDVLARWTD-----GLLYLGTIKKVDSAREVCLVQFED 63 (79)
T ss_dssp CCCCCTTCEEEBCCTT-----SCCCEEEEEEEETTTTEEEEEETT
T ss_pred cceeccCCEEEEEecC-----CCEEeEEEEEeccCCCEEEEEEcC
Confidence 3578999999998883 689999999999888989886544
No 39
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=38.53 E-value=58 Score=22.21 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=22.2
Q ss_pred CCcCCCCCeEEEEeccCCCCCCceEEEEEeeee
Q psy11712 40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYN 72 (123)
Q Consensus 40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~ 72 (123)
...+..|++|-++-. ..|-.|+|++..
T Consensus 20 ~~~f~vGekVl~~~~------~~~YeAkIl~v~ 46 (102)
T 2f5k_A 20 KPKFQEGERVLCFHG------PLLYEAKCVKVA 46 (102)
T ss_dssp SCSCCTTCEEEEESS------SSEEEEEEEEEE
T ss_pred CcccCCCCEEEEEEC------CEEEEEEEEEEE
Confidence 346899999999762 689999999975
No 40
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=34.30 E-value=62 Score=21.81 Aligned_cols=34 Identities=18% Similarity=0.004 Sum_probs=24.4
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCC--CceEEe
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNAST--RTYEVI 81 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~--~~YeV~ 81 (123)
.+..|++|-++- + +.|-.|+|++..... ..|=|-
T Consensus 25 ~~~vG~kv~v~~---~---~~~yeAeIl~ir~~~g~~~YYVH 60 (94)
T 2rnz_A 25 DIIIKCQCWVQK---N---DEERLAEILSINTRKAPPKFYVH 60 (94)
T ss_dssp GCCTTEEEEEEC---S---SCEEEEEEEEEECSSSSCEEEEE
T ss_pred cccCCCEEEEEE---C---CEEEEEEEEEEEEcCCCcEEEEE
Confidence 578999999983 1 689999999976432 345443
No 41
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.70 E-value=36 Score=22.59 Aligned_cols=44 Identities=25% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCC--CCceEEeec
Q psy11712 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNAS--TRTYEVIDI 83 (123)
Q Consensus 39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~--~~~YeV~D~ 83 (123)
....+..|++|-++-...+.+ ..|-.|+|++.... ...|=|-=.
T Consensus 6 ~~~~~~vG~kv~v~~~~~~~~-~~~y~AkIl~i~~~~~~~~YyVHY~ 51 (87)
T 2eko_A 6 SGGEIIEGCRLPVLRRNQDNE-DEWPLAEILSVKDISGRKLFYVHYI 51 (87)
T ss_dssp SSCSCCTTCEEEBCEECTTCC-EECCEEEEEEECCSSSCCCEEEEEC
T ss_pred ccccccCCCEEEEEEcccCCC-CeEEEEEEEEEEEcCCCcEEEEEeC
Confidence 344688999998886422222 68999999997632 345655443
No 42
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=31.98 E-value=1.1e+02 Score=20.33 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=40.3
Q ss_pred CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeee----------CCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYN----------ASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~----------~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
.+..+++||.|=|++++ .-|==|.|+.-. +..+.|-|.=-.. .+...++.++|.||-
T Consensus 2 ~~~~~~~GdlVwaK~~g-----yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~--~~~aWv~~~~l~p~~ 68 (108)
T 2l89_A 2 ADDRLNFGDRILVKAPG-----YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPD--FNFAWVKRNSVKPLL 68 (108)
T ss_dssp CSCCCCTTEEEEEECSS-----SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTT--TEEEEECGGGEEECC
T ss_pred CCCcccCCCEEEEEeCC-----cCCCceEecCcccCcHHHhhccCCCCeEEEEECCC--CCEEEEchhhceeCC
Confidence 35678999999999995 568888887632 1134566654432 256778999999886
No 43
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=31.23 E-value=46 Score=21.77 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=17.1
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEE
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEV 68 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~V 68 (123)
..+++||+|.|.+...+ +.+.+..+
T Consensus 60 ~~lk~Gd~V~F~~~~~~---~~~~it~i 84 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQG---NLSLLQDI 84 (88)
T ss_dssp CCCCTTCEEEEEEEEET---TEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeC---CEEEEEEE
Confidence 45899999999988643 33554443
No 44
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=30.73 E-value=48 Score=21.23 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=17.1
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEE
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEV 68 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~V 68 (123)
..+++||+|.|.+...+ +.+.+..+
T Consensus 52 ~~lk~Gd~V~F~~~~~~---~~~~it~i 76 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQG---NLSLLQDI 76 (80)
T ss_dssp CCCCTTCEEEEEEEEET---TEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeC---CEEEEEEE
Confidence 45899999999988643 33554443
No 45
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=27.31 E-value=1.5e+02 Score=20.71 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.3
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEEeeee
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYN 72 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~ 72 (123)
..+..|++|.++-.. ..|-.|+|++..
T Consensus 11 ~~~~vGe~v~~~~~d-----~~~y~AkIl~i~ 37 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD-----STWHSAEVIQSR 37 (133)
T ss_dssp CCCCTTSEEEEEETT-----TEEEEEEEEEEE
T ss_pred cccCCCCEEEEEeCC-----CCEEEEEEEEEE
Confidence 368999999998751 589999999965
No 46
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=26.28 E-value=37 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=18.0
Q ss_pred EeeeeCCCCceEEeecCCCC-CceeEe
Q psy11712 68 VVNYNASTRTYEVIDIDDVQ-KGPHQL 93 (123)
Q Consensus 68 Vv~~~~~~~~YeV~D~Dee~-k~r~~l 93 (123)
.|+|+.+++.|++.+.++.. .++|.+
T Consensus 38 ~V~y~~~t~~F~L~~~~~~~~~~~fqF 64 (87)
T 2ffg_A 38 SVKYFEKNQTFELTVFQKGEKPNTYPF 64 (87)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCeEEEEEecCCCccccccc
Confidence 35789999999998774433 345665
No 47
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.03 E-value=1.7e+02 Score=22.60 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.3
Q ss_pred CCCCCeEEEEeccCCCCCCceEEEEEeeeeCCC
Q psy11712 43 ANRGDMVAALVRNVEDNEDNWILAEVVNYNAST 75 (123)
Q Consensus 43 ~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~ 75 (123)
-+.||.|-|+-... .-|+-|+|+++....
T Consensus 3 yki~~~vd~~d~~~----Gawfea~i~~v~~~~ 31 (226)
T 3ask_A 3 YKVNEYVDARDTNM----GAWFEAQVVRVTRKA 31 (226)
T ss_dssp SCTTCEEEEECTTT----CCEEEEEEEEEEECC
T ss_pred cccCceEEeeecCC----CceeEEEEEEEeccc
Confidence 36899999997654 579999999997643
No 48
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.37 E-value=1.6e+02 Score=20.24 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=41.2
Q ss_pred CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeee---------CCCCceEEeecCCCCCceeEecCCceeeCCCC
Q psy11712 39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYN---------ASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTK 104 (123)
Q Consensus 39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~---------~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~~ 104 (123)
....+++||.|=|++++ .-|==|.|+.-. ...+.|-|.=-.+. ..+..++.++|.|+-.-
T Consensus 19 ~~~~~~~GdlVwaK~~g-----~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~-~~~aWv~~~~l~pf~~~ 87 (134)
T 2gfu_A 19 TSSDFSPGDLVWAKMEG-----YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDS-PTRGWVSKRLLKPYTGS 87 (134)
T ss_dssp SSCCCCTTSEEEECCTT-----SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSS-CEEEEECGGGEEESCCT
T ss_pred cCCCCCCCCEEEEeecC-----CCCCCeeecchhhhhhhhhccCCCceEEEEECCCC-CceEEECHHHcccCcch
Confidence 35678999999999995 456677776632 12346766655432 24678999999999753
No 49
>2f8v_T Telethonin; sarcomere, titin, Z1Z2, contractIle protein-CONT protein complex; 2.75A {Homo sapiens}
Probab=24.44 E-value=28 Score=26.02 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=11.7
Q ss_pred CCCCCceeEecCCceeeCCCCCC
Q psy11712 84 DDVQKGPHQLSRKQIIPLPTKRA 106 (123)
Q Consensus 84 Dee~k~r~~ls~~~IIPLP~~ka 106 (123)
+..+-+-|.|+=++++|||.++.
T Consensus 74 ~g~~lqEYqLPY~~~LPlPIFtP 96 (167)
T 2f8v_T 74 LGRGLQEYQLPYQRVLPLPIFTP 96 (167)
T ss_dssp TTSCCEEEESSCCCC--------
T ss_pred ccccchhhccchhccCCccccch
Confidence 45555569999999999998863
No 50
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=23.30 E-value=77 Score=20.41 Aligned_cols=28 Identities=25% Similarity=0.071 Sum_probs=19.1
Q ss_pred CcCCCCCeEEEEeccCCCCCCceEEEEEee
Q psy11712 41 HIANRGDMVAALVRNVEDNEDNWILAEVVN 70 (123)
Q Consensus 41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~ 70 (123)
..+++||+|.|.+...++ ..+.+..+..
T Consensus 46 ~~lk~Gd~V~F~~~~~~~--g~~~it~i~~ 73 (82)
T 2l55_A 46 QGLKAGDRVAFSFRLDPH--GMATLVTVAP 73 (82)
T ss_dssp SSCSTTCEEEEEEEEETT--TEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEECCC--CeEEEEEEEe
Confidence 468999999999886531 2466655543
No 51
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=22.95 E-value=83 Score=23.18 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=44.2
Q ss_pred CCCCCeEEEEeccCCCCCCceEEEEEeee-eCCC-------C-----------ceEEeecCCCCCceeEecCCceeeCCC
Q psy11712 43 ANRGDMVAALVRNVEDNEDNWILAEVVNY-NAST-------R-----------TYEVIDIDDVQKGPHQLSRKQIIPLPT 103 (123)
Q Consensus 43 ~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~-~~~~-------~-----------~YeV~D~Dee~k~r~~ls~~~IIPLP~ 103 (123)
.++||+|-+.-.+..+. .--=+|+|++= ..+. . +..++|+ ++.-...+.|+|-.
T Consensus 41 Mk~GD~~ffYHS~c~~p-gIvGi~eVv~e~ypD~t~fdp~s~YyDpks~~~~prw~~VdV------~~v~~~~~pv~L~e 113 (157)
T 2eve_A 41 MAEGDEFFFYHSSCPEP-GIAGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDI------GFVDIFKNVLGLGY 113 (157)
T ss_dssp CCTTCEEEEEECSSSSC-EEEEEEEEEEEEEECGGGGCTTSTTCCTTCCSSCCCCEEEEE------EEEEEEEEEEEHHH
T ss_pred cCCCCEEEEEecCCCCC-EEEEEEEEeEccCCCcccccccCcCcCcccCCCCCCEEEEEE------EEeeecCCccCHHH
Confidence 78999998887754322 33447788772 1111 1 1222222 24444567899999
Q ss_pred CCCCCCCCCCCCCCCC
Q psy11712 104 KRANPETEPEALFPIG 119 (123)
Q Consensus 104 ~ka~P~t~p~AlFp~g 119 (123)
-|++|+-.--+||.+|
T Consensus 114 lK~~~~L~~m~Lv~~g 129 (157)
T 2eve_A 114 LKQQSQLEQLPLVQKG 129 (157)
T ss_dssp HHTCGGGTTCGGGSTT
T ss_pred HhcCcccccCceeecc
Confidence 9999987777888886
No 52
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=22.38 E-value=1.3e+02 Score=21.08 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=27.1
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQ 87 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~ 87 (123)
.+..|++|-|+-+. .....|+|++-. ...-|+| +-||.+
T Consensus 5 ~v~vGq~V~akh~n-----gryy~~~V~~~~-~~~~y~V-~F~DgS 43 (118)
T 2qqr_A 5 SITAGQKVISKHKN-----GRFYQCEVVRLT-TETFYEV-NFDDGS 43 (118)
T ss_dssp CCCTTCEEEEECTT-----SSEEEEEEEEEE-EEEEEEE-EETTSC
T ss_pred eeccCCEEEEECCC-----CCEEeEEEEEEe-eEEEEEE-EcCCCC
Confidence 47899999998874 567799999953 2344555 555443
No 53
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=22.30 E-value=84 Score=20.66 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=20.9
Q ss_pred CCCCcCCCCCeEEEEeccCCCCCCceEEEEE
Q psy11712 38 DPSHIANRGDMVAALVRNVEDNEDNWILAEV 68 (123)
Q Consensus 38 ~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~V 68 (123)
+....+++|+.|-..-...+ +.+|.||+-
T Consensus 31 ~~ELS~~kGd~vevle~~~~--~peW~lvr~ 59 (82)
T 1u3o_A 31 SSELSIQVGQTVELLERPSE--RPGWCLVRT 59 (82)
T ss_dssp TTCCCBCTTCEEEESSCTTS--STTEEEEEE
T ss_pred CCeeeEcCCCEEEEEecCCC--CCCEEEEEE
Confidence 44567899999887765432 268999975
No 54
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=22.08 E-value=1.5e+02 Score=18.48 Aligned_cols=47 Identities=13% Similarity=0.021 Sum_probs=26.9
Q ss_pred ccccCCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeC--------CCCceEEeecCCC
Q psy11712 33 GAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNA--------STRTYEVIDIDDV 86 (123)
Q Consensus 33 Gaip~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~--------~~~~YeV~D~Dee 86 (123)
|.+ ...++.+++||.|...... .. +..+|.++.. -.--||..|..-|
T Consensus 32 g~~-~~~~~~v~~gd~I~v~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~lyed~~~~~~ 86 (92)
T 2k6p_A 32 GSC-AKASKEVKAGDTISLHYLK-----GI-EEYTILQIPALKNVPRKDTHLYIAPKTKELE 86 (92)
T ss_dssp TEE-CCTTCBCCTTCEEEECCSS-----CC-EEEEECCCCCCSCCCSSSTTSSEEECCCC--
T ss_pred CEE-cCCCCCcCCCCEEEEEeCC-----ce-EEEEEeccccccCCCHHHHHHHHHhcCCccc
Confidence 443 3668899999998776542 22 5556655432 2233777666533
No 55
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=21.31 E-value=2.3e+02 Score=20.34 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=41.1
Q ss_pred CCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeee------CCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712 37 ADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYN------ASTRTYEVIDIDDVQKGPHQLSRKQIIPLP 102 (123)
Q Consensus 37 ~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~------~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP 102 (123)
-+......+||.|-|++++ .-|==|.|+... +..++|-|.=-.+. .+..++.++|.|+=
T Consensus 11 ~~dg~~f~~GDLVWaKvkG-----~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~--~~awv~~~~L~pf~ 75 (154)
T 3llr_A 11 YEDGRGFGIGELVWGKLRG-----FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDG--KFSVVCVEKLMPLS 75 (154)
T ss_dssp CCSSCCCCTTCEEEECCTT-----SCCEEEEEECGGGTTSCCCCTTEEEEEETTTC--CEEEEEGGGEEEGG
T ss_pred cccCCCCccCCEEEEecCC-----CCCCCEEEecccccccccCCCCEEEEEEeCCC--CEEEEcHHHCcchh
Confidence 3456789999999999986 568888888853 12345655433332 45778888888874
No 56
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=20.13 E-value=2.8e+02 Score=21.15 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=39.4
Q ss_pred cCCCCCeEEEEeccCCCCCCce----EEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCCC
Q psy11712 42 IANRGDMVAALVRNVEDNEDNW----ILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTK 104 (123)
Q Consensus 42 ~~~~Gd~VAA~v~~~~~~~~~W----ILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~~ 104 (123)
.+++||.|-.++...+--...| ++.++++ .+.|.+.|.+ |.. .++.-+++=|.|..
T Consensus 319 ~~~~Gd~V~~~~~~~~Kl~~~w~GPy~V~~~~~----~~~~~l~~~~--g~~-~~~~v~~Lkp~~~~ 378 (395)
T 3oym_A 319 SPVVGQLVQERVARPASLRPRWHKPSTVLKVLN----PRTVVILDHL--GNN-RTVSIDNLKPTSHQ 378 (395)
T ss_dssp CCCTTCEEEEBCSSCCTTSCSBCCCEEEEEEEE----TTEEEEECTT--CCE-EEEEGGGEEECSCC
T ss_pred cCCCCcEEEEecCCCccCCcCCCCCeEEEEEcC----CCeEEEecCC--CCc-ccEehhhccccCCC
Confidence 6799999999877533222345 5555554 5779998887 333 78888999999865
Done!