RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11712
         (123 letters)



>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 60

 Score = 25.5 bits (56), Expect = 0.66
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 46  GDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV--IDIDDVQKGPHQLSRKQIIPLPT 103
           GD   A     EDN   +  AEV   ++S  T  V   D  + ++    +    I P+ T
Sbjct: 6   GDECFA--LYWEDN--KFYRAEVEALHSSGMTAVVKFTDYGNYEE----VLLSNIKPVQT 57


>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 57

 Score = 24.2 bits (53), Expect = 1.7
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 82  DIDDVQKGPHQLSRKQIIPL 101
            ++D++K   +L+  Q I L
Sbjct: 30  TLEDLRKNEDKLNHHQRIGL 49


>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 270

 Score = 25.1 bits (55), Expect = 2.2
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 7/29 (24%)

Query: 34  AIPADPSHIANRGDMVAALVRNVEDNEDN 62
            +     HIAN G +       VED E+ 
Sbjct: 201 TVSDSSPHIANIGRL-------VEDMENK 222


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0729    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,804
Number of extensions: 18000
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 4
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (21.9 bits)