BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11713
(769 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 185/305 (60%), Gaps = 47/305 (15%)
Query: 156 HKFTGNLRP-WPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRSGLITVLNDDE----- 209
+++TG LRP +P P R VP +I PDYA H G+ SEQ K + I +L+ ++
Sbjct: 2 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 61
Query: 210 ------KEGLRVACKVIR-------------FSFWMNGKLFSPLTKWSX----------- 239
+E L VA +I+ + SPL ++
Sbjct: 62 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 121
Query: 240 ----------XXXXXXXXXXXXXFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAI 289
+ GYHGDLNETF +GEV + A+KLVQ T+ECL +AI
Sbjct: 122 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 181
Query: 290 KIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKP 349
VKPG +YRE+GN+IQ+HAQA+G+SVVRSYCGHGIH+LFHTAP++PHYAKNKAVGVMK
Sbjct: 182 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKS 241
Query: 350 GHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR-NPPTP 408
GH FTIEPMI +G W+DE WPD WTAVT DG SAQFEHTLLVTDTGCEILT R + P
Sbjct: 242 GHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARP 301
Query: 409 YFLDQ 413
+F+ Q
Sbjct: 302 HFMSQ 306
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 101/162 (62%), Gaps = 4/162 (2%)
Query: 538 ACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRH--V 595
AC+ R CYPSPLNYY FP+SCCTSVNEVICHGIPD RPL GDI N + H +
Sbjct: 94 ACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDL 153
Query: 596 KSRSEEKQVEPPPAELISMEFSSRVCETPGCN-QVAKLQCPTCVKLSIQGSYFCSQVRSY 654
+V+ +L+ + + V + ++ Q + F S VRSY
Sbjct: 154 NETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGF-SVVRSY 212
Query: 655 CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
CGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G
Sbjct: 213 CGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEG 254
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 45/54 (83%)
Query: 435 APKNCLFQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
A N VRSYCGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G
Sbjct: 201 AQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEG 254
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 184/303 (60%), Gaps = 47/303 (15%)
Query: 156 HKFTGNLRP-WPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRSGLITVLNDDE----- 209
+++TG LRP +P P R VP +I PDYA H G+ SEQ K + I +L+ ++
Sbjct: 1 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 60
Query: 210 ------KEGLRVACKVIR-------------FSFWMNGKLFSPLTKWSX----------- 239
+E L VA +I+ + SPL ++
Sbjct: 61 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 120
Query: 240 ----------XXXXXXXXXXXXXFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAI 289
+ GYHGDLNETF +GEV + A+KLVQ T+ECL +AI
Sbjct: 121 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 180
Query: 290 KIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKP 349
VKPG +YRE+GN+IQ+HAQA+G+SVVRSYCGHGIH+LFHTAP++PHYAKNKAVGVMK
Sbjct: 181 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKS 240
Query: 350 GHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR-NPPTP 408
GH FTIEPMI +G W+DE WPD WTAVT DG SAQFEHTLLVTDTGCEILT R + P
Sbjct: 241 GHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARP 300
Query: 409 YFL 411
+F+
Sbjct: 301 HFM 303
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 100/162 (61%), Gaps = 4/162 (2%)
Query: 538 ACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKS 597
AC+ R CYPSPLNYY FP+SCCTSVNEVICHGIPD RPL GDI N + H
Sbjct: 93 ACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDL 152
Query: 598 RSE--EKQVEPPPAELISMEFSSRVCETPGCN-QVAKLQCPTCVKLSIQGSYFCSQVRSY 654
+V+ +L+ + + V + ++ Q + F S VRSY
Sbjct: 153 NETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGF-SVVRSY 211
Query: 655 CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
CGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G
Sbjct: 212 CGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEG 253
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 45/54 (83%)
Query: 435 APKNCLFQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
A N VRSYCGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G
Sbjct: 200 AQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEG 253
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/308 (48%), Positives = 186/308 (60%), Gaps = 50/308 (16%)
Query: 151 DPWPYHKFTGNLRP-WPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRSGLITVLNDDE 209
DP+ ++TG LRP +P P R VP +I PDYA H G+ SEQ K + I +L+ ++
Sbjct: 24 DPY---RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSED 80
Query: 210 -----------KEGLRVACKVIR-------------FSFWMNGKLFSPLTKWSX------ 239
+E L VA +I+ + SPL ++
Sbjct: 81 IEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCT 140
Query: 240 ---------------XXXXXXXXXXXXXFHRGYHGDLNETFLLGEVSEHAKKLVQVTWEC 284
+ GYHGDLNETF +GEV + A+KLVQ T+EC
Sbjct: 141 SVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYEC 200
Query: 285 LDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAV 344
L +AI VKPG +YRE+GN+IQ+HAQA+G+SVVRSYCGHGIH+LFHTAP++PHYAKNKAV
Sbjct: 201 LMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAV 260
Query: 345 GVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR- 403
GVMK GH FTIEPMI +G W+DE WPD WTAVT DG SAQFEHTLLVTDTGCEILT R
Sbjct: 261 GVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRL 320
Query: 404 NPPTPYFL 411
+ P+F+
Sbjct: 321 DSARPHFM 328
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 100/162 (61%), Gaps = 4/162 (2%)
Query: 538 ACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKS 597
AC+ R CYPSPLNYY FP+SCCTSVNEVICHGIPD RPL GDI N + H
Sbjct: 118 ACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDL 177
Query: 598 RSE--EKQVEPPPAELISMEFSSRVCETPGCN-QVAKLQCPTCVKLSIQGSYFCSQVRSY 654
+V+ +L+ + + V + ++ Q + F S VRSY
Sbjct: 178 NETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGF-SVVRSY 236
Query: 655 CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
CGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G
Sbjct: 237 CGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEG 278
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 45/54 (83%)
Query: 435 APKNCLFQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
A N VRSYCGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G
Sbjct: 225 AQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEG 278
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 116/159 (72%), Gaps = 3/159 (1%)
Query: 253 FHRGYHGDLNETFLLGEVSE---HAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHA 309
F++G H DLNET+ +G++++ K+LV+ + L +AIK KPG Y+ IG +I +
Sbjct: 197 FYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYV 256
Query: 310 QAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELW 369
+SVVRSY GHG+ +LFH+ P++PH+ KNKAVG+MKPGH FTIEPMI+QG + D LW
Sbjct: 257 SKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMINQGHYSDVLW 316
Query: 370 PDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTP 408
PD+WT+ T DG LSAQFEHTLL+T+ G EILT R +P
Sbjct: 317 PDQWTSATSDGKLSAQFEHTLLITNNGVEILTKRTQDSP 355
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVK 596
+ ++ YPS LNYY+FP+SCCTSVNE++CHGIPD RPL +GDI N F H
Sbjct: 145 EFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSD 204
Query: 597 SRS-----EEKQVEPPPAELISMEFSSRVCETPGCN-QVAKLQCPTCVKLSIQGSYFCSQ 650
+ V EL+ + S + C + T + + F S
Sbjct: 205 LNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNF-SV 263
Query: 651 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
VRSY GHG+ +LFH+ P++PH+ KNKAVG+MKPGH FTIEPMI+QG
Sbjct: 264 VRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMINQG 309
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 43/56 (76%)
Query: 433 AKAPKNCLFQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
A K VRSY GHG+ +LFH+ P++PH+ KNKAVG+MKPGH FTIEPMI+QG
Sbjct: 254 AYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMINQG 309
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 157 KFTGNLRPWPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRSGLITVLNDDEKEGLRVA 216
KFTG++RPWP + VP HI PDYAI IP SE YKR I V N++E + +R A
Sbjct: 58 KFTGDVRPWPLSKINHVPSHIERPDYAI--SSIPESELIYKRKSDIYVNNEEEIQRIREA 115
Query: 217 CKVIRFSFWMNGKLFSP 233
C + R + L SP
Sbjct: 116 CILGRKTLDYAHTLVSP 132
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 110/161 (68%)
Query: 253 FHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAH 312
+ G+HGDLNET +G + + +LV +ECL I +VKP Y+++G+ I+ A +
Sbjct: 157 YLNGFHGDLNETVFIGRPDDDSVRLVHAAYECLCAGIGVVKPEALYKQVGDAIEACASQY 216
Query: 313 GYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDK 372
SVVR+Y GHG+ LFHT+P++ HYA NK++G+M+PGH FTIEPMI+ G+W+D WPDK
Sbjct: 217 QCSVVRTYTGHGVGHLFHTSPTVCHYANNKSLGMMRPGHVFTIEPMINLGTWQDVTWPDK 276
Query: 373 WTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTPYFLDQ 413
WT+ T DG SAQFEHT++VT+ G EI T P + Q
Sbjct: 277 WTSTTKDGRRSAQFEHTMVVTNGGVEIFTDWVDGVPTYQKQ 317
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVK 596
+A VER YPSPLNYY FP+S CTSVNEVICHGIPD R L GDI N ++ H
Sbjct: 105 EATVERNMYPSPLNYYGFPKSVCTSVNEVICHGIPDSRELEEGDILNIDVSSYLNGFH-G 163
Query: 597 SRSEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQG---SYFCSQVRS 653
+E + P + + + ++ C G V V +I+ Y CS VR+
Sbjct: 164 DLNETVFIGRPDDDSVRLVHAAYECLCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRT 223
Query: 654 YCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSE 706
Y GHG+ LFHT+P++ HYA NK++G+M+PGH FTIEPMI+ G +T P +
Sbjct: 224 YTGHGVGHLFHTSPTVCHYANNKSLGMMRPGHVFTIEPMINLGTWQDVTWPDK 276
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSE 498
VR+Y GHG+ LFHT+P++ HYA NK++G+M+PGH FTIEPMI+ G +T P +
Sbjct: 221 VRTYTGHGVGHLFHTSPTVCHYANNKSLGMMRPGHVFTIEPMINLGTWQDVTWPDK 276
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 157 KFTGNLRPWPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRSGL----ITVLNDDEK-- 210
FTG LRP TPRR VP HI PDYA G+ SE+ + S + I L+DD K
Sbjct: 7 DFTGPLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKKT 66
Query: 211 ---EGLRVACKVIR 221
+ ++ C++ R
Sbjct: 67 AEIQRIKTVCQLSR 80
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 103 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 162
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 163 VVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 222
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 223 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 254
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 51 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 109
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 110 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 160
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 161 F-SVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 164 VREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 104 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 163
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 164 VVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 223
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 224 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 255
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 52 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 110
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 111 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 161
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 162 F-SVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 165 VREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 103 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 162
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 163 VVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 222
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 223 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 254
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 51 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 109
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 110 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 160
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 161 F-SVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 164 VREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 103 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 162
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 163 VVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 222
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 223 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 254
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 51 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 109
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 110 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 160
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 161 F-SVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 164 VREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 104 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 163
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 164 VVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 223
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 224 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 255
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 52 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 110
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 111 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 161
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 162 F-SVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 165 VREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 103 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 162
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 163 VVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 222
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 223 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 254
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 51 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 109
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 110 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 160
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 161 F-SVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 164 VREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 101 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 160
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 161 VVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 220
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 221 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 252
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 49 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 107
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 108 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 158
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 159 F-SVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 213
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 162 VREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 213
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 104 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 163
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI + FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 164 VVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 223
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 224 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 255
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 52 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 110
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 111 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 161
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI + FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 162 F-SVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI + FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 165 VREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 104 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 163
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI + FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 164 VVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 223
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 224 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 255
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 52 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 110
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 111 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 161
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI + FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 162 F-SVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI + FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 165 VREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 104 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 163
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI + FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 164 VVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 223
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 224 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 255
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 52 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 110
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 111 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 161
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI + FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 162 F-SVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI + FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 165 VREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 216
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 99/152 (65%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+ +A G+S
Sbjct: 103 GFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFS 162
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR YCGHGI + FH P + HY + V+KPG +FTIEPM++ G D WT
Sbjct: 163 VVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTV 222
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPT 407
T D LSAQ+EHT++VTD GCEILT R T
Sbjct: 223 KTKDRSLSAQYEHTIVVTDNGCEILTLRKDDT 254
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPD-LRPLANGDICNGKHQCFMLPRHVKSRS 599
E+ + L Y+ +P+S C S+NEV+CHGIPD + L +GDI N H + S
Sbjct: 51 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDT-S 109
Query: 600 EEKQVEPPPAELISMEFSSRVCET-------------PGCNQVAKLQCPTCVKLSIQGSY 646
+ V P R+C PG N + ++ ++
Sbjct: 110 KMFIVGKPTI------MGERLCRITQESLYLALRMVKPGINL---REIGAAIQKFVEAEG 160
Query: 647 FCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 702
F S VR YCGHGI + FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 161 F-SVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMT 494
VR YCGHGI + FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 164 VREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT 215
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 98/149 (65%)
Query: 253 FHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAH 312
++G +GD T+++GE E K+LV+VT E L+KAIK++KPG + ++ + IQ ++
Sbjct: 111 VYQGLYGDAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESV 170
Query: 313 GYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDK 372
G++V+R Y GHG+ R H P IP+Y V++ G + IEPM+S+G WR + D
Sbjct: 171 GFNVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDG 230
Query: 373 WTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
WTAVT+DG A FEHT+L+T+ G EILT
Sbjct: 231 WTAVTVDGSRCAHFEHTILITENGAEILT 259
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 546 PSPLNYYEFPRSCCTSVNEVICHGIP---------DLRPLANGDICNGKHQCFMLPRHVK 596
P+ Y + + C SVNE + HG+P D+ + G + G + + ++
Sbjct: 67 PAFKGYGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVT-YIV 125
Query: 597 SRSEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCG 656
++E+ E +E + ++ + PG C++ +++ F + +R Y G
Sbjct: 126 GETDERGKELVRVTREVLEKAIKMIK-PGIRL---GDVSHCIQETVESVGF-NVIRDYVG 180
Query: 657 HGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
HG+ R H P IP+Y V++ G + IEPM+S+G
Sbjct: 181 HGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEG 220
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
+R Y GHG+ R H P IP+Y V++ G + IEPM+S+G
Sbjct: 175 IRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEG 220
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 91/146 (62%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G HGD N TF G+V++ + LV T E +AI VKPG IG VI+ +A GY+
Sbjct: 141 GVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYN 200
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR + GHGI FH + HY + +M+PG +FTIEPMI+ G+ E+W D WT
Sbjct: 201 VVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTV 260
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILT 401
VT D +AQFEHTLLVTDTG EILT
Sbjct: 261 VTKDRKWTAQFEHTLLVTDTGVEILT 286
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRS 599
V+ YPS L Y FP+SCCTS+NEVICHGIPD + +GDI N ++ H + +
Sbjct: 89 VDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNA 148
Query: 600 EEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQ--------V 651
PA ++ E V T A LS+ G S V
Sbjct: 149 TF------PAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVV 202
Query: 652 RSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
R + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 203 RDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLG 247
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
VR + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 202 VRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLG 247
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 91/146 (62%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G HGD N TF G+V++ + LV T E +AI VKPG IG VI+ +A GY+
Sbjct: 144 GVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYN 203
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR + GHGI FH + HY + +M+PG +FTIEPMI+ G+ E+W D WT
Sbjct: 204 VVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTV 263
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILT 401
VT D +AQFEHTLLVTDTG EILT
Sbjct: 264 VTKDRKWTAQFEHTLLVTDTGVEILT 289
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRS 599
V+ YPS L Y FP+SC TS+NEVICHGIPD + +GDI N ++ H + +
Sbjct: 92 VDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNA 151
Query: 600 EEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQ--------V 651
PA ++ E V T A LS+ G S V
Sbjct: 152 TF------PAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVV 205
Query: 652 RSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
R + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 206 RDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLG 250
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
VR + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 205 VRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLG 250
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 91/146 (62%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G HGD N TF G+V++ + LV T E +AI VKPG IG VI+ +A GY+
Sbjct: 144 GVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYN 203
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR + GHGI FH + HY + +M+PG +FTIEPMI+ G+ E+W D WT
Sbjct: 204 VVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTV 263
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILT 401
VT D +AQFEHTLLVTDTG EILT
Sbjct: 264 VTKDRKWTAQFEHTLLVTDTGVEILT 289
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRS 599
V+ YPS L Y FP+SCCTS+NEVICHGIPD + +GDI N ++ H + +
Sbjct: 92 VDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNA 151
Query: 600 EEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQ--------V 651
PA ++ E V T A LS+ G S V
Sbjct: 152 TF------PAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVV 205
Query: 652 RSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
R + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 206 RDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLG 250
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
VR + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 205 VRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLG 250
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 91/146 (62%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G HGD N TF G+V++ + LV T E +AI VKPG IG VI+ +A GY+
Sbjct: 138 GVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYN 197
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
VVR + GHGI FH + HY + +M+PG +FTIEPMI+ G+ E+W D WT
Sbjct: 198 VVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTV 257
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILT 401
VT D +AQFEHTLLVTDTG EILT
Sbjct: 258 VTKDRKWTAQFEHTLLVTDTGVEILT 283
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRS 599
V+ YPS L Y FP+SCCTS+NEVICHGIPD + +GDI N ++ H + +
Sbjct: 86 VDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNA 145
Query: 600 EEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQ--------V 651
PA ++ E V T A LS+ G S V
Sbjct: 146 TF------PAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVV 199
Query: 652 RSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
R + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 200 RDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLG 244
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
VR + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 199 VRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLG 244
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G++GD + + +G+V+ K+L+QVT++ + K I++V+PG K +IG IQ +A+ H YS
Sbjct: 105 GWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYS 164
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWP-DKWT 374
VVR Y GHGI R+FH PSI +Y +N +K G FT+EPMI+ G++ L D WT
Sbjct: 165 VVRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWT 224
Query: 375 AVTIDGLLSAQFEHTLLVTDTGCEILT 401
T D LSAQFEHT+ VT G EI T
Sbjct: 225 VTTRDKSLSAQFEHTIGVTKDGFEIFT 251
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 546 PSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRSEE--KQ 603
P+PLNY FP+S CTS+N V+CHGIP+ +PL NGDI N + + +
Sbjct: 59 PAPLNYKGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGD 118
Query: 604 VEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCGHGIHRLF 663
V P LI + + + + AKL S + S VR Y GHGI R+F
Sbjct: 119 VAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVF 178
Query: 664 HTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
H PSI +Y +N +K G FT+EPMI+ G
Sbjct: 179 HDKPSILNYGRNGTGLTLKEGMFFTVEPMINAG 211
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 435 APKNCLFQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
A K+ VR Y GHGI R+FH PSI +Y +N +K G FT+EPMI+ G
Sbjct: 158 AEKHNYSVVRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAG 211
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 139 bits (349), Expect = 7e-33, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
G++GD + + +G+V+ K+L+QVT++ + K I++V+PG K +IG IQ +A+ H YS
Sbjct: 105 GWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYS 164
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWP-DKWT 374
VVR Y GHGI R+FH PSI +Y +N +K G FT+EPMI+ G++ L D WT
Sbjct: 165 VVRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWT 224
Query: 375 AVTIDGLLSAQFEHTLLVTDTGCEILT 401
T D LSAQFEHT+ VT G EI T
Sbjct: 225 VTTRDKSLSAQFEHTIGVTKDGFEIFT 251
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 546 PSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRSEE--KQ 603
P+PLNY FP+S CTS+N V+CHGIP+ +PL NGDI N + + +
Sbjct: 59 PAPLNYKGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGD 118
Query: 604 VEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCGHGIHRLF 663
V P LI + + + + AKL S + S VR Y GHGI R+F
Sbjct: 119 VAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVF 178
Query: 664 HTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
H PSI +Y +N +K G FT+EPMI+ G
Sbjct: 179 HDKPSILNYGRNGTGLTLKEGMFFTVEPMINAG 211
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
VR Y GHGI R+FH PSI +Y +N +K G FT+EPMI+ G
Sbjct: 166 VRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAG 211
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 87/147 (59%)
Query: 264 TFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGH 323
++++GE + +L++VT + L I+ + G + +IG+ IQ + + GY VVR + GH
Sbjct: 109 SYVVGESTPEIDRLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGH 168
Query: 324 GIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLS 383
GI H +P IPHY + +K G TIEPM++ G+WR ++ P+ WTA T DG LS
Sbjct: 169 GIGPTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLS 228
Query: 384 AQFEHTLLVTDTGCEILTARNPPTPYF 410
Q+EH+L +T G ILT++ Y
Sbjct: 229 CQYEHSLAITKEGPRILTSQGEELTYL 255
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 10/165 (6%)
Query: 547 SPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRSEEKQV-E 605
+ + Y + + C S+N+ ICHG P + L +GD+ C L + V E
Sbjct: 56 AQIGYEGYKYATCCSINDEICHGFPRKKVLKDGDLIK-VDMCVDLKGAISDSCWSYVVGE 114
Query: 606 PPPAELISMEFSSR-----VCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCGHGIH 660
P ME + + + + N++ + ++ ++G + VR + GHGI
Sbjct: 115 STPEIDRLMEVTKKALYLGIEQAQVGNRIGDI--GHAIQTYVEGEGY-GVVRDFVGHGIG 171
Query: 661 RLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPS 705
H +P IPHY + +K G TIEPM++ G +P+
Sbjct: 172 PTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPN 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPS 497
VR + GHGI H +P IPHY + +K G TIEPM++ G +P+
Sbjct: 162 VRDFVGHGIGPTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPN 216
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 6/154 (3%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQA---- 311
G+HGD TF +G V + L + T ++ I + PG + ++ + I+ +A
Sbjct: 132 GWHGDSAWTFAVGTVIPSDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQ 191
Query: 312 --HGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELW 369
+ +V Y GHGI R H P +P+ ++ G IEPM++ G+ + +
Sbjct: 192 FDRAFGIVDGYGGHGIGRSMHLDPFLPNEGAPGKGPLLAVGSVLAIEPMLTLGTTQTRVL 251
Query: 370 PDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR 403
D WT VT DG +A +EHT+ VT+ G ILT R
Sbjct: 252 ADDWTVVTTDGSRAAHWEHTVAVTEAGPRILTMR 285
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 19/170 (11%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRP-LANGDICNGKHQCFMLPRHVKSR- 598
E PS L Y+ FP S C+SVN+ + HGIP LA+GD+ + + H S
Sbjct: 80 EAGAVPSFLGYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAW 139
Query: 599 ---------SEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCS 649
S+E E A +SME + PG N++ + + F
Sbjct: 140 TFAVGTVIPSDEALSE---ATRLSME-AGIAAMIPG-NRLTDVSHAIELGTRAAEKQFDR 194
Query: 650 Q---VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
V Y GHGI R H P +P+ ++ G IEPM++ G
Sbjct: 195 AFGIVDGYGGHGIGRSMHLDPFLPNEGAPGKGPLLAVGSVLAIEPMLTLG 244
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
V Y GHGI R H P +P+ ++ G IEPM++ G
Sbjct: 199 VDGYGGHGIGRSMHLDPFLPNEGAPGKGPLLAVGSVLAIEPMLTLG 244
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 256 GYHGDLNETFLLGEVSEHAK-KLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGY 314
GY+ D +F++GE + K K+ V + AI VKPG K IG + A+ +
Sbjct: 100 GYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDL 159
Query: 315 SVVRSYCGHGIHRLFHTAPS-IPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKW 373
V+++ GHG+ H AP+ + +Y K ++ G IEP IS + ++W
Sbjct: 160 KVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEW 219
Query: 374 TAVTIDGLLSAQFEHTLLVTDTGCEILTAR 403
T D AQ EHT++VT G ILT +
Sbjct: 220 AFETSDKSFVAQIEHTVIVTKDG-PILTTK 248
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 29/198 (14%)
Query: 547 SPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKS------RSE 600
+P++ FP C SVNE + HGIP R + GD+ N + +
Sbjct: 55 APIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGES 114
Query: 601 EKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVR-------- 652
+ ++ ++ +M F N +AK++ T KLS G + R
Sbjct: 115 DDPMKQKVCDVATMAFE---------NAIAKVKPGT--KLSNIGKAVHNTARQNDLKVIK 163
Query: 653 SYCGHGIHRLFHTAPS-IPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHYHH 711
+ GHG+ H AP+ + +Y K ++ G IEP IS +E +
Sbjct: 164 NLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFET 223
Query: 712 ITRATLLSLHLSSHDVIV 729
++ + + H VIV
Sbjct: 224 SDKSFVAQIE---HTVIV 238
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 257 YHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSV 316
Y+ D+ T ++G +E +++ ++ E +A++ KPG +E+ ++ + + +GY
Sbjct: 217 YNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG- 275
Query: 317 VRSY----CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDK 372
Y GHG+ H P I Y + V+K G TIEP
Sbjct: 276 --DYFIHSLGHGVGLEIHEWPRISQYDET----VLKEGMVITIEP--------------- 314
Query: 373 WTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
+ I L + E T+L+T+ G + LT
Sbjct: 315 --GIYIPKLGGVRIEDTVLITENGAKRLT 341
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 253 FHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAH 312
+++GY D+ T +GE S+ K++ + E + + +K G RE + + +
Sbjct: 219 YYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDYITEK 278
Query: 313 GYSVVRSYC-GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPD 371
GY + GHGI H AP + + V++PG + T+EP
Sbjct: 279 GYGEYFGHSTGHGIGLEIHEAPGLAFRSDT----VLEPGMAVTVEP-------------- 320
Query: 372 KWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
+ I G+ + E ++VT G E++T
Sbjct: 321 ---GIYIPGIGGVRIEDDIIVTSEGNEVIT 347
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 256 GYHGD--LNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHG 313
G H D + +T + V +L++ E L+ AI + + G + +E+G I+ + G
Sbjct: 84 GVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRG 143
Query: 314 YSVVRSYCGHGIHRL-FHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGS 363
+ + + GH I R H SIP+ + V+K G F IEP + G+
Sbjct: 144 FKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGA 194
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 256 GYHGD--LNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHG 313
G H D + +T + V +L++ E L+ AI + + G + +E+G I+ + G
Sbjct: 84 GVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRG 143
Query: 314 YSVVRSYCGHGIHRL-FHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGS 363
+ + + GH I R H SIP+ + V+K G F IEP + G+
Sbjct: 144 FKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGA 194
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 257 YHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSV 316
Y+ D+ T ++G +E K++ ++ E KA++ KPG +E+ ++ + +GY
Sbjct: 220 YNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYGE 279
Query: 317 VRSYC-GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTA 375
++ GHG+ H P + Y + V++ G TIEP
Sbjct: 280 YFNHSLGHGVGLEVHEWPRVSQYDET----VLREGMVITIEP-----------------G 318
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILT 401
+ I + + E T+L+T G + LT
Sbjct: 319 IYIPKIGGVRIEDTILITKNGSKRLT 344
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVADVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVEPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVEPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVEPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVEPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVEPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVEPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 255 RGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGY 314
+GY D+ T LGE+ E K+ +V + + A K V+ G K +++ + + GY
Sbjct: 221 KGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGY 280
Query: 315 SVVRSY-CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 359
+ GHG+ H P Y ++K G +FTIEP I
Sbjct: 281 GEYFIHRTGHGLGLDVHEEP----YIGPDGEVILKNGMTFTIEPGI 322
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 22/149 (14%)
Query: 254 HRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHG 313
+ Y D+ +GE S+ K++ + E ++A+KI K G + + +V + + G
Sbjct: 223 YENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIREKG 282
Query: 314 YSVVRSYC-GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDK 372
Y + GHGI H P+I + + FT+EP
Sbjct: 283 YGEFFGHSLGHGIGLEVHEGPAISFRNDSP----LPENVVFTVEP--------------- 323
Query: 373 WTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
+ ++G + E +++ + GCEILT
Sbjct: 324 --GIYLEGKFGIRIEEDVVLKEQGCEILT 350
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 26/166 (15%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAH 312
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+ + R +
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 313 GYSV------VRSYCGHGIHRLFHTAP----------SIPHYAKNKAVGVMKPGHSFTIE 356
+ V HR F A + Y ++++ +++PG T+E
Sbjct: 325 LVKLGILKGDVDELIAQNAHRPFFMAGLSHWLGLDVHDVGVYGQDRSR-ILEPGMVLTVE 383
Query: 357 PMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
P + D P+++ + I + E +++T+TG E LTA
Sbjct: 384 PGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 46/176 (26%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 266 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 325
Query: 302 --------GNVIQRHAQ-------AHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGV 346
G+V + AQ HG S ++ G +H + Y ++++ +
Sbjct: 326 LVKLGILKGDVDELIAQNAHRPFFMHGLS---AWLGLDVH-------DVGVYGQDRSR-I 374
Query: 347 MKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
++PG T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 375 LEPGMVLTVEPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 422
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+ P + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVAPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+ P + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVAPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 36/171 (21%)
Query: 254 HRGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----------- 301
++GY G + TF + G+ ++ +++ + E L+ ++++ +PG E+
Sbjct: 265 YKGYAGAITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSG 324
Query: 302 --------GNVIQRHAQ-AHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAVGVMKPGH 351
G+V + AQ AH R + HG+ H L + Y ++++ +++PG
Sbjct: 325 LVKLGILKGDVDELIAQNAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRSR-ILEPGM 378
Query: 352 SFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 379 VLTVEPGLYIAP--DAEVPEQYRGIGI------RIEDDIVITETGNENLTA 421
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
GY+ L T L S+ +L QV E + +K++KPG + +I + H
Sbjct: 255 GYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVL 314
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKA--------VGVMKPGHSFTIEPMI 359
R++ G+G H+ ++ HY +A V++PG ++EPMI
Sbjct: 315 QYRTF-GYG-----HSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMI 360
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
GY+ L T L S+ +L QV E + +K++KPG + +I + H
Sbjct: 255 GYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVL 314
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKA--------VGVMKPGHSFTIEPMI 359
R++ G+G H+ ++ HY +A V++PG ++EPMI
Sbjct: 315 QYRTF-GYG-----HSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMI 360
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
GY D+ T ++G SE KK+ ++ E + A++ V G + + +GY
Sbjct: 243 GYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISKYGYG 302
Query: 316 VVRSY-CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMIS-QGSWRDELWPD 371
+ GHG+ H P I K ++K G FTIEP I QG + + D
Sbjct: 303 EYFIHRTGHGLGIDVHEEPYISPGNKK----ILKDGMVFTIEPGIYLQGKFGVRIEDD 356
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 30/158 (18%)
Query: 253 FHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAH 312
+ GY+ D T+ +G+ S + A+ V+PG ++ + R A
Sbjct: 239 YEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQV-DAAARDVLAD 297
Query: 313 G----YSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDEL 368
Y V R+ GHGI H P I A N+ + G +F+IEP I
Sbjct: 298 AGLAEYFVHRT--GHGIGLCVHEEPYI--VAGNEL--PLVAGMAFSIEPGI--------Y 343
Query: 369 WPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPP 406
+P +W A+ E ++VT+ G L+ N P
Sbjct: 344 FPGRW---------GARIEDIVVVTENGA--LSVNNRP 370
>pdb|1Z8R|A Chain A, 2a Cysteine Proteinase From Human Coxsackievirus B4
(Strain Jvb BENSCHOTEN NEW YORK 51)
Length = 166
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 16/59 (27%)
Query: 12 GCNQVAKLQCPTCVKLSIQGSYFCSQVSR-LPVLHHSPCLV--------PKYCQTYVAL 61
GC+ +A+ QC T G YFC+ S+ PV P LV PK Q++V L
Sbjct: 65 GCDTIARCQCTT-------GVYFCASKSKHYPVSFEGPGLVEVQESEYYPKRYQSHVLL 116
>pdb|3EQM|A Chain A, Crystal Structure Of Human Placental Aromatase Cytochrome
P450 In Complex With Androstenedione
pdb|3S79|A Chain A, Human Placental Aromatase Cytochrome P450 (Cyp19a1)
Refined At 2.75 Angstrom
pdb|3S7S|A Chain A, Crystal Structure Of Human Placental Aromatase Complexed
With Breast Cancer Drug Exemestane
pdb|4GL5|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg029 (Compound 4)
pdb|4GL7|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg046 (Compound 5)
Length = 503
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 683 PGHSFTIEPMISQGKPLFMTNPSETHYHHITRATLLSLHLSSHDVIV------LFGVMKP 736
PG+ I P+IS G+ L+M S +Y++ + + +S + ++ +F +MK
Sbjct: 50 PGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH 109
Query: 737 GH 738
H
Sbjct: 110 NH 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,745,980
Number of Sequences: 62578
Number of extensions: 1055576
Number of successful extensions: 2373
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2202
Number of HSP's gapped (non-prelim): 174
length of query: 769
length of database: 14,973,337
effective HSP length: 106
effective length of query: 663
effective length of database: 8,340,069
effective search space: 5529465747
effective search space used: 5529465747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)