RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11713
(769 letters)
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 313 bits (803), Expect = 1e-99
Identities = 146/330 (44%), Positives = 184/330 (55%), Gaps = 60/330 (18%)
Query: 124 ELWFFCLIPFLVFLITEGSGTSDKNGYDPWPYHKFTGNLRPWPQTPRREVPVHIGLPDYA 183
E W +CL +G + K P +TG LRP+P +PRR VP HI PD+A
Sbjct: 72 EGWLYCL--------KKGQARTSK-----LPDFDWTGPLRPYPISPRRVVPDHIPKPDWA 118
Query: 184 IHKHGIPLSEQDYKRSGLITVLNDDEKEGLRVAC------------------------KV 219
G P E + + + ++ + +R C +V
Sbjct: 119 --LDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRV 176
Query: 220 IRFSFWMNGKLFSPLTKWSLLLGLGTTV---------------------VDVTVFHRGYH 258
+ + G SPL T+V VDVTV+++G H
Sbjct: 177 VHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCH 236
Query: 259 GDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVR 318
GDLNETF +G V E +++LV+ T+ECL+KAI IVKPG +YRE+G VI RHA G SVV+
Sbjct: 237 GDLNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVK 296
Query: 319 SYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTI 378
SYCGHGI LFH AP+IPHYA+NKAVGVMK G FTIEPMI+ G WRD +WPD WTAVT
Sbjct: 297 SYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTA 356
Query: 379 DGLLSAQFEHTLLVTDTGCEILTARNPPTP 408
DG SAQFEHTLLVT+TG E+LTAR P +P
Sbjct: 357 DGKRSAQFEHTLLVTETGVEVLTARLPSSP 386
Score = 94.5 bits (235), Expect = 1e-20
Identities = 36/48 (75%), Positives = 40/48 (83%)
Query: 649 SQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
S V+SYCGHGI LFH AP+IPHYA+NKAVGVMK G FTIEPMI+ G
Sbjct: 293 SVVKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMINAG 340
Score = 93.7 bits (233), Expect = 2e-20
Identities = 35/46 (76%), Positives = 39/46 (84%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
V+SYCGHGI LFH AP+IPHYA+NKAVGVMK G FTIEPMI+ G
Sbjct: 295 VKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMINAG 340
Score = 89.5 bits (222), Expect = 6e-19
Identities = 32/47 (68%), Positives = 37/47 (78%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
+A + YPSPLNY+ FP+SCCTSVNEVICHGIPD R L +GDI N
Sbjct: 179 EATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVN 225
Score = 35.6 bits (82), Expect = 0.096
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 13 CNQVAKLQCPTCVKLSI--QGSYFCSQ 37
C++ A LQCP C++L + +G+ FCSQ
Sbjct: 15 CSKPAHLQCPKCLELKLPREGASFCSQ 41
Score = 35.6 bits (82), Expect = 0.096
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 626 CNQVAKLQCPTCVKLSI--QGSYFCSQ 650
C++ A LQCP C++L + +G+ FCSQ
Sbjct: 15 CSKPAHLQCPKCLELKLPREGASFCSQ 41
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 270 bits (692), Expect = 2e-85
Identities = 85/154 (55%), Positives = 108/154 (70%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+DV V GYHGD TF++GEVSE AKKLV+VT E L K I+ VKPG + +IG+ I++
Sbjct: 84 IDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEK 143
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
+A+ +GYSVVR + GHGI R FH P IP+Y + +KPG FTIEPMI+ G++
Sbjct: 144 YAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGTYEVV 203
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
PD WT VT DG LSAQFEHT+L+T+ G EILT
Sbjct: 204 TLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILT 237
Score = 139 bits (354), Expect = 2e-37
Identities = 63/187 (33%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANG-----DIC---NGKH-- 586
+ E YP+PL YY FP+S CTSVNEV+CHGIPD R L +G D+ +G H
Sbjct: 37 EFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGD 96
Query: 587 QCFMLPRHVKSRSEEKQVEPPPAELISMEFSSRVCE-TPGCNQVAKLQCPTCVKLS---- 641
V SEE + ++ E T ++
Sbjct: 97 SARTFI--VGEVSEEAK---------------KLVEVTEEALYKGIEAVKPGNRIGDIGH 139
Query: 642 -IQ---GSYFCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGK 697
I+ S VR + GHGI R FH P IP+Y + +KPG FTIEPMI+ G
Sbjct: 140 AIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGT 199
Query: 698 PLFMTNP 704
+T P
Sbjct: 200 YEVVTLP 206
Score = 88.7 bits (221), Expect = 9e-20
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNP 496
VR + GHGI R FH P IP+Y + +KPG FTIEPMI+ G +T P
Sbjct: 153 VREFGGHGIGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGTYEVVTLP 206
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 241 bits (619), Expect = 2e-74
Identities = 83/156 (53%), Positives = 102/156 (65%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+DVTV GYHGD + TF +GE+S K+L +VT E L I VKPG + +IG+ IQ+
Sbjct: 94 IDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQK 153
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
+A+A G+SVVR YCGHGI R FH P IPHY V+K G FTIEPMI+ G +
Sbjct: 154 YAEAEGFSVVREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINAGKREVK 213
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR 403
D WT VT DG LSAQ+EHT+ VT+ G EILT R
Sbjct: 214 TLKDGWTVVTKDGSLSAQYEHTVAVTEDGPEILTLR 249
Score = 132 bits (335), Expect = 1e-34
Identities = 65/188 (34%), Positives = 79/188 (42%), Gaps = 56/188 (29%)
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGD--------ICNGKH--QCF 589
++ P+PL Y+ FP+S CTSVNEV+CHGIP + L GD I +G H
Sbjct: 50 RDQGAIPAPLGYHGFPKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSR 109
Query: 590 MLPRHVKSRSEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQ----GS 645
V S E + R+CE V K + L I G+
Sbjct: 110 TFG--VGEISPEDK---------------RLCE------VTKE----ALYLGIAAVKPGA 142
Query: 646 YF---------------CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIE 690
S VR YCGHGI R FH P IPHY V+K G FTIE
Sbjct: 143 RLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIE 202
Query: 691 PMISQGKP 698
PMI+ GK
Sbjct: 203 PMINAGKR 210
Score = 81.7 bits (203), Expect = 3e-17
Identities = 28/48 (58%), Positives = 30/48 (62%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
VR YCGHGI R FH P IPHY V+K G FTIEPMI+ GK
Sbjct: 163 VREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINAGKR 210
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 222 bits (567), Expect = 5e-67
Identities = 81/161 (50%), Positives = 103/161 (63%), Gaps = 2/161 (1%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVS-EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
+DV GY GD TF++GEVS E AK+L++ T E L I+ VKPG + +IG IQ
Sbjct: 95 IDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQ 154
Query: 307 RHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRD 366
+A++ G+SVVR+ GHGI R H PSIP+Y K+ +K G F IEPMI+ GS
Sbjct: 155 EYAESRGFSVVRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEV 214
Query: 367 ELWP-DKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPP 406
P D+WT VT DG LSAQFEHT++VT+ GCEILT R
Sbjct: 215 VEGPSDRWTLVTKDGSLSAQFEHTVIVTEDGCEILTLRPEE 255
Score = 111 bits (281), Expect = 1e-27
Identities = 52/189 (27%), Positives = 64/189 (33%), Gaps = 56/189 (29%)
Query: 539 CVERECYPSPLNYYEFPRSCCTSVNEVICHGIP-DLRPLANGDICN--------GKH--Q 587
E+ YP+ L Y FP C SVNEV+ HGIP D + L GDI G
Sbjct: 49 IREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDT 108
Query: 588 CFMLPRHVKSRSEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQ---- 643
V E R+ E K + I+
Sbjct: 109 AITFV-----------VGEVSDEDA-----KRLLE------ATK----EALYAGIEAVKP 142
Query: 644 GSYFC-------SQVRSY--------CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFT 688
G+ S GHGI R H PSIP+Y K+ +K G F
Sbjct: 143 GARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFA 202
Query: 689 IEPMISQGK 697
IEPMI+ G
Sbjct: 203 IEPMINTGS 211
Score = 79.6 bits (197), Expect = 2e-16
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGK 489
VR+ GHGI R H PSIP+Y K+ +K G F IEPMI+ G
Sbjct: 165 VRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGS 211
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 209 bits (533), Expect = 2e-62
Identities = 82/156 (52%), Positives = 105/156 (67%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+DV V + GYHGD +TFL+G++S A+KL++ T E L KAI+ KPG + EIG IQ+
Sbjct: 92 IDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQK 151
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
+A+A G+SVVR YCGHGI R FH P IP+Y K +K G FTIEPM++ G+
Sbjct: 152 YAEAKGFSVVREYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGTEEIT 211
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR 403
D WT T DG LSAQFEHT+++TD G EILT R
Sbjct: 212 TAADGWTVKTKDGSLSAQFEHTIVITDNGPEILTER 247
Score = 110 bits (277), Expect = 3e-27
Identities = 59/170 (34%), Positives = 76/170 (44%), Gaps = 22/170 (12%)
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN--------GKH--QCF 589
+ P+ L YY FP S C SVNEV+ HGIPD + L +GDI N G H
Sbjct: 48 EKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAK 107
Query: 590 MLPRHVKSRSEEKQVEPPPAELISMEFSSRVCET--PGCNQVAKLQCPTCVKLSIQGSYF 647
S EK +E + E + E PG + ++ + +
Sbjct: 108 TFLVGKISPEAEKLLE------CTEESLYKAIEEAKPGNRI---GEIGAAIQKYAE-AKG 157
Query: 648 CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGK 697
S VR YCGHGI R FH P IP+Y K +K G FTIEPM++ G
Sbjct: 158 FSVVREYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGT 207
Score = 71.6 bits (176), Expect = 8e-14
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGK 489
VR YCGHGI R FH P IP+Y K +K G FTIEPM++ G
Sbjct: 161 VREYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGT 207
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 200 bits (510), Expect = 6e-59
Identities = 71/157 (45%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+DV+ + GYHGD TF +G VSE A+KL +V E L IK VK G +IG I+
Sbjct: 99 IDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIED 158
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPS-IPHYAKNKAVGVMKPGHSFTIEPMISQGSWRD 366
A+ +GYSVVR GHG+ R H PS I Y +++PG + +EP ++ G+
Sbjct: 159 FAKKNGYSVVRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNLGAKDA 218
Query: 367 ELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR 403
E D WT VT D LSAQFEHT++VT G EILT R
Sbjct: 219 ETLDDGWTVVTPDKSLSAQFEHTVVVTRDGPEILTDR 255
Score = 70.3 bits (173), Expect = 2e-13
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 545 YPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
PSP YY FP S C SVNE + HGIP R + +GD+ N
Sbjct: 60 IPSPEGYYGFPGSTCISVNEEVAHGIPGPRVIKDGDLVN 98
Score = 54.1 bits (131), Expect = 7e-08
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 443 VRSYCGHGIHRLFHTAPS-IPHYAKNKAVGVMKPGHSFTIEPMISQG 488
VR GHG+ R H PS I Y +++PG + +EP ++ G
Sbjct: 168 VRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNLG 214
Score = 54.1 bits (131), Expect = 7e-08
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 651 VRSYCGHGIHRLFHTAPS-IPHYAKNKAVGVMKPGHSFTIEPMISQG 696
VR GHG+ R H PS I Y +++PG + +EP ++ G
Sbjct: 168 VRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNLG 214
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 149 bits (377), Expect = 5e-40
Identities = 71/155 (45%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+DV+ GY+GD + ++GEVSE KK+ Q + ECL+ AI I+KPG EIG VI+
Sbjct: 134 IDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIEN 193
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
A +G+SVV + GHG+ FH P +PH+ +N + + PG FTIEPMI+ G
Sbjct: 194 CADKYGFSVVDQFVGHGVGIKFHENPYVPHH-RNSSKIPLAPGMIFTIEPMINVGKKEGV 252
Query: 368 LWP-DKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
+ P + W A T D SAQ+EHT+L+T+TG EILT
Sbjct: 253 IDPINHWEARTCDNQPSAQWEHTILITETGYEILT 287
Score = 95.7 bits (238), Expect = 1e-21
Identities = 61/178 (34%), Positives = 80/178 (44%), Gaps = 49/178 (27%)
Query: 546 PSPLNYYE--FPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFM------LPRHVK- 596
P+PLNY FP++ CTS+NEVICHGIP+ PL NGDI N C + R V
Sbjct: 94 PAPLNYGSPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMI 153
Query: 597 -SRSEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTC----------------VK 639
SE K+ +VC+ A L+C V
Sbjct: 154 GEVSEIKK---------------KVCQ-------ASLECLNAAIAILKPGIPLYEIGEVI 191
Query: 640 LSIQGSYFCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGK 697
+ Y S V + GHG+ FH P +PH+ +N + + PG FTIEPMI+ GK
Sbjct: 192 ENCADKYGFSVVDQFVGHGVGIKFHENPYVPHH-RNSSKIPLAPGMIFTIEPMINVGK 248
Score = 48.7 bits (116), Expect = 5e-06
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGK 489
V + GHG+ FH P +PH+ +N + + PG FTIEPMI+ GK
Sbjct: 203 VDQFVGHGVGIKFHENPYVPHH-RNSSKIPLAPGMIFTIEPMINVGK 248
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 121 bits (306), Expect = 2e-31
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
++DV + GYH D+ TF++G+ + ++L + E + AI VKPG ++ +
Sbjct: 78 LIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQEAAIAAVKPGVTGGDVDAAAR 137
Query: 307 RHAQAHGYS-VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWR 365
+ GY GHGI H P+ ++ V++PG FTIEP I
Sbjct: 138 EVLEEGGYGEYFPHGLGHGIGLDVH--DEGPYISRGGNDRVLEPGMVFTIEPGI------ 189
Query: 366 DELWPDKWTAVTIDGLLSAQFEHTLLVTD 394
I G + E T+LVT+
Sbjct: 190 ----------YFIPGWGGVRIEDTVLVTE 208
Score = 42.3 bits (100), Expect = 3e-04
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 549 LNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
FP + N + H IP R L +GD+
Sbjct: 44 ARGPAFPPIVASGPNAAVPHYIPSDRVLKDGDLVL 78
Score = 41.5 bits (98), Expect = 5e-04
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
GHGI H P+ ++ V++PG FTIEP I
Sbjct: 149 FPHGLGHGIGLDVH--DEGPYISRGGNDRVLEPGMVFTIEPGI 189
Score = 41.5 bits (98), Expect = 5e-04
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 651 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
GHGI H P+ ++ V++PG FTIEP I
Sbjct: 149 FPHGLGHGIGLDVH--DEGPYISRGGNDRVLEPGMVFTIEPGI 189
Score = 30.7 bits (70), Expect = 2.4
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSY---CGHGIHRL 328
E +K ++ L+ A+ ++PG RE+ ++ A G + ++ G +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNA- 59
Query: 329 FHTAPSIPHYAKNKAVGVMKPGHSFTIE 356
++PHY + V+K G I+
Sbjct: 60 -----AVPHYIPSDR--VLKDGDLVLID 80
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 116 bits (293), Expect = 5e-29
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Query: 254 HRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHG 313
+RG D + +G S+ K L+ VT E + + I+ G + +IG IQ +A++ G
Sbjct: 130 YRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRG 189
Query: 314 YSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWR-DELWPDK 372
Y VVR GHG+ H P +P+Y ++ G TIEPMI+ G+W D
Sbjct: 190 YGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTWEIDTDMKTG 249
Query: 373 WTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTPY 409
W T+DG LS Q+EH ++T G ILT++ Y
Sbjct: 250 WAHKTLDGGLSCQYEHQFVITKDGPVILTSQGEERTY 286
Score = 42.5 bits (100), Expect = 4e-04
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
VR GHG+ H P +P+Y ++ G TIEPMI+ G
Sbjct: 193 VRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTG 238
Score = 42.5 bits (100), Expect = 4e-04
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 651 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
VR GHG+ H P +P+Y ++ G TIEPMI+ G
Sbjct: 193 VRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTG 238
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 104 bits (261), Expect = 2e-25
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
+VD+ + GYH DL TF++GE S+ ++L + E + A+ ++PG E+ +
Sbjct: 77 LVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAR 136
Query: 307 RHAQAHGYSVVR-SYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWR 365
+ HG GHGI H P + V++PG F +EP +
Sbjct: 137 EVLEEHGLGPNFGHRTGHGIGLEIHEPPVLKAGDD----TVLEPGMVFAVEPGLY----- 187
Query: 366 DELWPDKWTAVTIDGLLSAQFEHTLLVTDTGC 397
+ G + E T+LVT+ G
Sbjct: 188 ------------LPGGGGVRIEDTVLVTEDGP 207
Score = 43.6 bits (103), Expect = 1e-04
Identities = 27/163 (16%), Positives = 41/163 (25%), Gaps = 43/163 (26%)
Query: 553 EFPRSCCTSVNEV--ICHGIPDLRPLANGDI--------CNGKHQCFMLPRHVKSRSEEK 602
+ H PD R L GD+ +G H R
Sbjct: 45 YPAGPTIVGSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLT--RTF------- 95
Query: 603 QVEPPPAELISMEFSSRVCET----------PG--CNQVAKLQCPTCVKLSIQGSYFCSQ 650
+ P E + PG +V + ++
Sbjct: 96 VIGEPSDEQRELY---EAVREAQEAALAALRPGVTAEEVDAA-----AREVLEEHGLGPN 147
Query: 651 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
GHGI H P + V++PG F +EP +
Sbjct: 148 FGHRTGHGIGLEIHEPPVLKAGDD----TVLEPGMVFAVEPGL 186
Score = 39.7 bits (93), Expect = 0.002
Identities = 35/219 (15%), Positives = 64/219 (29%), Gaps = 39/219 (17%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHT 331
+K ++ + A + ++PG E+ I++ +A G Y
Sbjct: 2 ARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAG-----GYPAGPTIVGSGA 56
Query: 332 APSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDK-WTAVTIDGLLSAQ----F 386
++PHY + ++ G ++ G + D T V G S + +
Sbjct: 57 RTALPHYRPDDRR--LQEGDLVLVD---LGGVYDG-YHADLTRTFVI--GEPSDEQRELY 108
Query: 387 EHTLLVTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSY 446
E + L R +L +
Sbjct: 109 EAVREAQEAALAALRPGVTAEEVD---------AAAREVLEE--------HGLGPNFGHR 151
Query: 447 CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
GHGI H P + V++PG F +EP +
Sbjct: 152 TGHGIGLEIHEPPVLKAGDD----TVLEPGMVFAVEPGL 186
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 100 bits (251), Expect = 9e-24
Identities = 56/154 (36%), Positives = 85/154 (55%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+D+ V G D T+ +G+VS+ A+KL+ V L K I G + +IG I+
Sbjct: 93 IDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIES 152
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
+ G+SV R + GHGI + H P+I H+ K ++ G TIEP+++ G +
Sbjct: 153 YVANEGFSVARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVGMRYSK 212
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
+ + WTA T+DG LSAQ+EHT+ +T G ILT
Sbjct: 213 VDLNGWTARTMDGKLSAQYEHTIAITKDGPIILT 246
Score = 48.9 bits (116), Expect = 3e-06
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 551 YYEFPRSCCTSVNEVICHGIPDLRPLANGDIC--------NGKHQCFMLPRHVKSRSEEK 602
Y +P + C SVN+ +CH P PL GDI NG V S+E
Sbjct: 60 YNGYPYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDE- 118
Query: 603 QVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQ----VRSYCGHG 658
AE + + + + + G +Q + +I+ SY ++ R + GHG
Sbjct: 119 ------AEKLLLVAENALYK--GIDQAVIGNRVGDIGYAIE-SYVANEGFSVARDFTGHG 169
Query: 659 IHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 696
I + H P+I H+ K ++ G TIEP+++ G
Sbjct: 170 IGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVG 207
Score = 37.7 bits (87), Expect = 0.015
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 444 RSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 488
R + GHGI + H P+I H+ K ++ G TIEP+++ G
Sbjct: 163 RDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVG 207
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 90.6 bits (226), Expect = 5e-20
Identities = 55/218 (25%), Positives = 87/218 (39%), Gaps = 69/218 (31%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+D+ GY D T LG E LV+ + E L+ AI++V+PG EIG VI+
Sbjct: 80 LDLGAHVDGYIADTAVTVDLGGKYE---DLVEASEEALEAAIEVVRPGVSVGEIGRVIEE 136
Query: 308 HAQAHGYSVVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEP-------MI 359
+++G+ +R+ GHG+ R H PSIP+Y + V ++ G + IEP +
Sbjct: 137 TIRSYGFKPIRNLTGHGLERYELHAGPSIPNYDEGGGV-KLEEGDVYAIEPFATDGEGKV 195
Query: 360 SQGS-------------------------------------WRDELWPDKWTAVTIDGLL 382
+G W + L+ + + + LL
Sbjct: 196 VEGPEVEIYSLLRNRPVRLPAARKLLEEIEEEYNTLPFAERWLEGLFGED--KLELRRLL 253
Query: 383 SA------------------QFEHTLLVTDTGCEILTA 402
A Q EHT++VT+ GCE+ T
Sbjct: 254 KAGALYGYPVLKEVKGGLVSQAEHTVIVTEDGCEVTTK 291
Score = 41.3 bits (98), Expect = 0.001
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 448 GHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 483
GHG+ R H PSIP+Y + V ++ G + IEP
Sbjct: 151 GHGLERYELHAGPSIPNYDEGGGV-KLEEGDVYAIEP 186
Score = 41.3 bits (98), Expect = 0.001
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 656 GHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 691
GHG+ R H PSIP+Y + V ++ G + IEP
Sbjct: 151 GHGLERYELHAGPSIPNYDEGGGV-KLEEGDVYAIEP 186
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 90.6 bits (225), Expect = 3e-19
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 21/158 (13%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
++D+ + GY D+ TF +G+ S+ +++ + E + AI ++PG E+ +
Sbjct: 237 LIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAAR 296
Query: 307 RHAQAHGYSVVR--SYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSW 364
+ + GY + GHG+ P Y + ++PG F+IEP I
Sbjct: 297 QVLEKAGYGLYFLHGT-GHGV-GFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGI----- 349
Query: 365 RDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
P V I E T+LVT+ G E+LT
Sbjct: 350 ---YIPGGG-GVRI--------EDTVLVTEDGFEVLTR 375
Score = 31.6 bits (72), Expect = 1.4
Identities = 31/157 (19%), Positives = 47/157 (29%), Gaps = 32/157 (20%)
Query: 554 FPRSCCTSVNEVICHGIPDLRPLANGDI------CNGKHQCFMLPRHVKSRSEEKQVEPP 607
F + N + H P R L +GD+ C + R + P
Sbjct: 208 FDTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTF-------PIGKP 260
Query: 608 PAELISMEFSSRVCE---------TPG--CNQVAKLQCPTCVKLSIQGSYFCSQVRSYCG 656
E E V E PG +V ++ + Y + G
Sbjct: 261 SDEQ--REIYEAVLEAQEAAIAAIRPGVTGGEVDAA----ARQVLEKAGYGLYFLHGT-G 313
Query: 657 HGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
HG+ P Y + ++PG F+IEP I
Sbjct: 314 HGV-GFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGI 349
Score = 31.6 bits (72), Expect = 1.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
GHG+ P Y + ++PG F+IEP I
Sbjct: 313 GHGV-GFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGI 349
Score = 31.6 bits (72), Expect = 1.8
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVR--SYCGHGIHRLF 329
+K ++ L+ A++ ++PG EI ++ + G + G +
Sbjct: 161 AKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPSFDTIVASGEN--- 217
Query: 330 HTAPSIPHYAKNKAVGVMKPGHSFTIE 356
++PHY + ++ G I+
Sbjct: 218 ---AALPHYTPSDR--KLRDGDLVLID 239
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 71.4 bits (176), Expect = 5e-14
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
++D + GY D+ T +GE S+ K++ ++ E AIK VKPG +E+ +
Sbjct: 78 LIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAAR 137
Query: 307 RHAQAHGYSVVRSY----CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 359
+ GY Y GHG+ H AP I + V++ G FTIEP I
Sbjct: 138 DVIEEAGYG---EYFIHRTGHGVGLEVHEAPYISPGSD----DVLEEGMVFTIEPGI 187
Score = 35.2 bits (82), Expect = 0.072
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
GHG+ H AP I + V++ G FTIEP I
Sbjct: 154 GHGVGLEVHEAPYISPGSD----DVLEEGMVFTIEPGI 187
Score = 35.2 bits (82), Expect = 0.072
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 656 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
GHG+ H AP I + V++ G FTIEP I
Sbjct: 154 GHGVGLEVHEAPYISPGSD----DVLEEGMVFTIEPGI 187
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 72.3 bits (178), Expect = 8e-14
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+D GY D T + L++ E L+ AIK P + EIG I+
Sbjct: 79 LDFGAHVDGYIADSAFTVDFDPKYD---DLLEAAKEALNAAIKEAGPDVRLGEIGEAIEE 135
Query: 308 HAQAHGYSVVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 362
+++G+ +R+ GH I R H SIP+ K ++ G + IEP + G
Sbjct: 136 VIESYGFKPIRNLTGHSIERYRLHAGKSIPNV-KGGEGTRLEEGDVYAIEPFATTG 190
Score = 46.5 bits (111), Expect = 3e-05
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 645 SYFCSQVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTN 703
SY +R+ GH I R H SIP+ K ++ G + IEP + GK
Sbjct: 139 SYGFKPIRNLTGHSIERYRLHAGKSIPNV-KGGEGTRLEEGDVYAIEPFATTGKGYVHDG 197
Query: 704 PSETHY 709
P + Y
Sbjct: 198 PECSIY 203
Score = 45.7 bits (109), Expect = 4e-05
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 443 VRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHY 501
+R+ GH I R H SIP+ K ++ G + IEP + GK P + Y
Sbjct: 145 IRNLTGHSIERYRLHAGKSIPNV-KGGEGTRLEEGDVYAIEPFATTGKGYVHDGPECSIY 203
Score = 41.1 bits (97), Expect = 0.001
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 378 IDGLLSAQFEHTLLVTDTGCEILTA 402
I G AQFEHT++V + G E+ T
Sbjct: 267 ISGGYVAQFEHTIIVREDGKEVTTR 291
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 67.1 bits (164), Expect = 5e-12
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+D+ GY D T LG+ LV+ + L AIK ++ G + EIG IQ
Sbjct: 83 LDLGAHVDGYIADTAITVDLGDQ---YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQE 139
Query: 308 HAQAHGYSVVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 362
+++G + + GH + H SIP+ + ++ G IEP + G
Sbjct: 140 VIESYGVKPISNLTGHSMAPYRLHGGKSIPNVKERDTT-KLEEGDVVAIEPFATDG 194
Score = 42.5 bits (100), Expect = 6e-04
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 645 SYFCSQVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTN 703
SY + + GH + H SIP+ + ++ G IEP + G
Sbjct: 143 SYGVKPISNLTGHSMAPYRLHGGKSIPNVKERDTT-KLEEGDVVAIEPFATDGVGYVTDG 201
Query: 704 PSETHY 709
+ Y
Sbjct: 202 GEVSIY 207
Score = 41.3 bits (97), Expect = 0.001
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 443 VRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHY 501
+ + GH + H SIP+ + ++ G IEP + G + Y
Sbjct: 149 ISNLTGHSMAPYRLHGGKSIPNVKERDTT-KLEEGDVVAIEPFATDGVGYVTDGGEVSIY 207
Score = 36.3 bits (84), Expect = 0.045
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 378 IDGLLSAQFEHTLLVTDTGCEILT 401
I G AQ+EHT+LV + G E+ T
Sbjct: 271 ISGGYVAQWEHTILVEEHGKEVTT 294
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 43.2 bits (102), Expect = 4e-04
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 247 VVDVTVFHRGYHGDLNETFLL-GEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI---- 301
++D ++GY GD+ TF + G+ + +++ + E L+ ++++ +PG RE+
Sbjct: 256 LIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEV 315
Query: 302 ---------------GNVIQRHA-QAHGYSVVRSYCGHGI-HRLFHTAPSIPHYAKNKAV 344
G+V Q A AH R + HG+ H L + Y ++++
Sbjct: 316 VRIMVSGLVKLGILKGDVDQLIAENAH-----RPFFMHGLSHWLGLDVHDVGVYGQDRS- 369
Query: 345 GVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTA 402
+++PG T+EP + D P+++ + I + E +++T+TG E LTA
Sbjct: 370 RILEPGMVLTVEPGLYIAP--DADVPEQYRGIGI------RIEDDIVITETGNENLTA 419
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 40.2 bits (94), Expect = 0.002
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYS 315
GY+ L T L EVS+ K+ + ++ ++++KPG + ++I + + H
Sbjct: 93 GYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLL 152
Query: 316 VVRSYCGHGIHRLFHTAPSIPHYAKNKA--------VGVMKPGHSFTIEPMI 359
R++ G+G H+ + HY +A V++PG ++EPMI
Sbjct: 153 RYRTF-GYG-----HSFGVLSHYYGREAGLELREDIDTVLEPGMVVSMEPMI 198
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 39.5 bits (93), Expect = 0.004
Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 31/169 (18%)
Query: 255 RGYHGDLNETFLL-GEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----GNVIQRHA 309
GY D+ TF + G+ ++ ++L + AI KPG Y +I V+
Sbjct: 85 GGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGL 144
Query: 310 QAHGY-----------SVVRSYCGHGI-HRLFHTAPSIPHYAK-NKAVGVMKPGHSFTIE 356
+ G + HG+ H L + Y + + ++PG TIE
Sbjct: 145 KELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVGGYLRYLRRARPLEPGMVITIE 204
Query: 357 PMISQGSWRDELWPDKWT---AVTIDGLLSAQFEHTLLVTDTGCEILTA 402
P I D L ++ + I E +LVT+ G E LT
Sbjct: 205 PGIYFI--PDLLDVPEYFRGGGIRI--------EDDVLVTEDGPENLTR 243
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 35.8 bits (82), Expect = 0.090
Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 30/152 (19%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGN----VIQRHAQA 311
GY DL TF+LGE + +++ + + +V PG K + + + VI+
Sbjct: 268 GYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLP 327
Query: 312 HGYSVVRSYCGH--GIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELW 369
H R + GH G+ P + +A PG ++E
Sbjct: 328 HYN---RGHLGHGDGVFLGLEEVP----FVSTQATETFCPGMVLSLE------------- 367
Query: 370 PDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
T G+ S E +L+TD+G E L+
Sbjct: 368 ----TPYYGIGVGSIMLEDMILITDSGFEFLS 395
>gnl|CDD|130727 TIGR01666, YCCS, TIGR01666 family membrane protein. This model
represents a clade of sequences from gamma and beta
proteobacteria. These proteins are >700 amino acids long
and many have been annotated as putative membrane
proteins. The gene from Salmonella has been annotated as
a putative efflux transporter. The gene from E. coli has
the name yccS [Cell envelope, Other].
Length = 704
Score = 34.1 bits (78), Expect = 0.31
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 204 VLNDDEKEGLRVACKVIRFSFWMNGKLFSPLTKWSLLLGLGTTVVDVTVFHRGY 257
L+D++ GL+ I F LF + S++L LG ++ F+ GY
Sbjct: 354 QLHDEQIHGLKNIWARIFSHFTFESPLFRHAVRLSIVLFLGYAIIQFFGFNLGY 407
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 33.9 bits (77), Expect = 0.36
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGY- 314
GY D+ TF++GE E +K+ Q + + +V PG K +++ + + G
Sbjct: 269 GYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLP 328
Query: 315 SVVRSYCGHG 324
+ R + GHG
Sbjct: 329 NYNRGHLGHG 338
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 33.5 bits (76), Expect = 0.38
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 256 GYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGY- 314
GY D+ TF++GE E +K+ Q + + +V PG K +++ + + G
Sbjct: 186 GYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLP 245
Query: 315 SVVRSYCGHG 324
+ R + GHG
Sbjct: 246 NYNRGHLGHG 255
>gnl|CDD|218150 pfam04559, Herpes_UL17, Herpesvirus UL17 protein. UL17 protein is
required for DNA cleavage and packaging in herpes
viruses. It has been shown to associate with immature
B-type capsids, and is required for the the localisation
of capsids and capsid proteins to the intranuclear sites
where viral DNA is cleaved and packaged. In the virion,
UL17 is a component of the tegument, which is a protein
layer surrounding the viral capsid.
Length = 496
Score = 32.4 bits (74), Expect = 0.99
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 161 NLRPWPQTPRREVPVHIGLPDYAIHKHGIPLSEQDY 196
N + R + VH+ LPD + GI Y
Sbjct: 7 NETAFSLGDRCPLLVHLVLPDDCLSAAGIDPLRNFY 42
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 31.8 bits (72), Expect = 1.5
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 231 FSPL-TKWSLLLGLGTTV-VDVTVFHRGYHGDLNETFLLGEVSE-----HAKKLVQVTWE 283
FSPL + +L G V +D+ G+ + TF++G E ++
Sbjct: 90 FSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHL 149
Query: 284 CLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHR 327
+ A+++VKPG ++ I + A ++G + V H + +
Sbjct: 150 AAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSHQLKQ 193
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 31.8 bits (72), Expect = 1.5
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 31/176 (17%)
Query: 241 LGLGTTVVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYRE 300
G GT + R YH L+ T LG+ ++ + E ++ + KPG +
Sbjct: 240 KGEGTFFEIAGCYKR-YHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLAAAKPGNTCED 298
Query: 301 IGNVIQRHAQAHGYSVVRSYCGHGIHRLFHTAPSI-----PHYAKNKAVGVMKPGHSFTI 355
I N + V++ Y GIH+ T I P + + ++PG + +
Sbjct: 299 IANAF--------FKVLKKY---GIHKDSRTGYPIGLSYPPDWGERTM--SLRPGDNTVL 345
Query: 356 EPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTPYFL 411
+P ++ + LW + W GL + ++L+T+TG E L+ N P F+
Sbjct: 346 QPGMT-FHFMTGLWMEDW------GL---EITESILITETGVECLS--NVPRQLFV 389
>gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 394
Score = 31.1 bits (71), Expect = 2.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 285 LDKAIKI---VKPGEKYREIGNVIQRHAQAHGYSV 316
L IKI PGE Y EI ++ + G+S
Sbjct: 12 LKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFST 46
>gnl|CDD|235113 PRK03287, truB, tRNA pseudouridine synthase B; Provisional.
Length = 298
Score = 30.2 bits (69), Expect = 3.6
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 722 LSSHDVIV----LFGVMKPGHSFTIEPM 745
++SHDV+ LFG K GH+ T++PM
Sbjct: 20 MTSHDVVARCRRLFGTRKVGHAGTLDPM 47
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 30.5 bits (69), Expect = 4.4
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAH-------GYSV--VRSYCG 322
L+Q T + + IK + +IG IQ +++ Y + +R+ G
Sbjct: 263 PKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNG 322
Query: 323 HGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGS 363
H I + H S+P + M+ G F IE S G
Sbjct: 323 HSIGPYIIHGGKSVPIVKGGENT-RMEEGELFAIETFASTGR 363
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 29.8 bits (67), Expect = 6.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 89 FGNKNHPINRIGRYIQFAYLSQVTKYSTYHNLKHQELWFFCLI 131
F + N I +G +I FAY+ Q+T Y Y ++ ++ + F L
Sbjct: 252 FNSGNRAIEGLGVFI-FAYVFQITAYEVYMDMTNRSVGKFVLA 293
>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction
mechanisms / Cell division and chromosome partitioning /
Transcription].
Length = 242
Score = 28.6 bits (64), Expect = 9.8
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 9 ETPGCNQVAKLQCPTCVKL---------SIQGSYFCSQVSRLPVLHHSPCLVPKYCQTYV 59
+ PG + V KL CP+C L SI G++F + + + + C+ Y+
Sbjct: 141 DIPGKSSV-KLYCPSCEDLYLPKSSRHQSIDGAFFGTSFPHMFLQTFPELFPKRSCERYI 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.444
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,309,391
Number of extensions: 3664136
Number of successful extensions: 2860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2818
Number of HSP's successfully gapped: 93
Length of query: 769
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 665
Effective length of database: 6,324,786
Effective search space: 4205982690
Effective search space used: 4205982690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.0 bits)