RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11713
(769 letters)
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 318 bits (816), Expect = e-102
Identities = 119/165 (72%), Positives = 140/165 (84%), Gaps = 1/165 (0%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
VD+T++ GYHGDLNETF +GEV + A+KLVQ T+ECL +AI VKPG +YRE+GN+IQ+
Sbjct: 164 VDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQK 223
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
HAQA+G+SVVRSYCGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G W+DE
Sbjct: 224 HAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDE 283
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNP-PTPYFL 411
WPD WTAVT DG SAQFEHTLLVTDTGCEILT R P+F+
Sbjct: 284 TWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHFM 328
Score = 106 bits (268), Expect = 2e-25
Identities = 40/51 (78%), Positives = 44/51 (86%)
Query: 648 CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
S VRSYCGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G
Sbjct: 230 FSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGW 280
Score = 104 bits (262), Expect = 1e-24
Identities = 39/48 (81%), Positives = 43/48 (89%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
VRSYCGHGIH+LFHTAP++PHYAKNKAVGVMK GH FTIEPMI +G
Sbjct: 233 VRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGW 280
Score = 103 bits (258), Expect = 4e-24
Identities = 37/47 (78%), Positives = 39/47 (82%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
AC+ R CYPSPLNYY FP+SCCTSVNEVICHGIPD RPL GDI N
Sbjct: 117 LACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVN 163
Score = 93.9 bits (234), Expect = 5e-21
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 142 SGTSDKNGYDPWPYHKFTGNLRP-WPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRSG 200
SG + + +++TG LRP +P P R VP +I PDYA H G+ SEQ K +
Sbjct: 12 SGLVPRGSHMLEDPYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTS 71
Query: 201 LITVLNDDEKEGLRVACKVIR 221
I +L+ ++ EG+R+ C++ R
Sbjct: 72 QIKLLSSEDIEGMRLVCRLAR 92
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 313 bits (805), Expect = e-100
Identities = 89/173 (51%), Positives = 123/173 (71%), Gaps = 4/173 (2%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSE---HAKKLVQVTWECLDKAIKIVKPGEKYREIGNV 304
+D++VF++G H DLNET+ +G++++ K+LV+ + L +AIK KPG Y+ IG +
Sbjct: 192 IDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTL 251
Query: 305 IQRHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSW 364
I + +SVVRSY GHG+ +LFH+ P++PH+ KNKAVG+MKPGH FTIEPMI+QG +
Sbjct: 252 IDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMINQGHY 311
Query: 365 RDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPT-PYFLDQNAK 416
D LWPD+WT+ T DG LSAQFEHTLL+T+ G EILT R + P D +
Sbjct: 312 SDVLWPDQWTSATSDGKLSAQFEHTLLITNNGVEILTKRTQDSPPLGFDTKDE 364
Score = 107 bits (268), Expect = 4e-25
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 648 CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
S VRSY GHG+ +LFH+ P++PH+ KNKAVG+MKPGH FTIEPMI+QG
Sbjct: 261 FSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMINQGHY 311
Score = 104 bits (262), Expect = 2e-24
Identities = 33/48 (68%), Positives = 41/48 (85%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
VRSY GHG+ +LFH+ P++PH+ KNKAVG+MKPGH FTIEPMI+QG
Sbjct: 264 VRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMINQGHY 311
Score = 104 bits (261), Expect = 3e-24
Identities = 30/47 (63%), Positives = 38/47 (80%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
+ ++ YPS LNYY+FP+SCCTSVNE++CHGIPD RPL +GDI N
Sbjct: 145 EFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYRPLKSGDIIN 191
Score = 90.9 bits (226), Expect = 8e-20
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 150 YDPWPYHKFTGNLRPWPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRSGLITVLNDDE 209
+ KFTG++RPWP + VP HI PDYA IP SE YKR I V N++E
Sbjct: 51 LKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYA--ISSIPESELIYKRKSDIYVNNEEE 108
Query: 210 KEGLRVACKVIR 221
+ +R AC + R
Sbjct: 109 IQRIREACILGR 120
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 308 bits (791), Expect = 2e-99
Identities = 76/154 (49%), Positives = 96/154 (62%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+DVT + G HGD N TF G+V++ + LV T E +AI VKPG IG VI+
Sbjct: 130 IDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIES 189
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
+A GY+VVR + GHGI FH + HY + +M+PG +FTIEPMI+ G+ E
Sbjct: 190 YANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYE 249
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
+W D WT VT D +AQFEHTLLVTDTG EILT
Sbjct: 250 IWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283
Score = 105 bits (264), Expect = 3e-25
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 648 CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
+ VR + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 196 YNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGAL 246
Score = 103 bits (259), Expect = 1e-24
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
+ V+ YPS L Y FP+SCCTS+NEVICHGIPD + +GDI N
Sbjct: 83 EYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVN 129
Score = 102 bits (258), Expect = 2e-24
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
VR + GHGI FH + HY + +M+PG +FTIEPMI+ G
Sbjct: 199 VRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGAL 246
Score = 63.3 bits (155), Expect = 5e-11
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 157 KFTGNLRPWPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRSGLITVLNDDEKEGLRVA 216
L P +P R VP I P+Y G P ++ V + E +RVA
Sbjct: 2 PSRTALSPGVLSPTRPVPNWIARPEYV----GKPAAQ----EGSEPWVQTPEVIEKMRVA 53
Query: 217 CKV 219
++
Sbjct: 54 GRI 56
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 282 bits (724), Expect = 5e-90
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 1/168 (0%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+DVTV G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ+
Sbjct: 95 IDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQK 154
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
+A G+SVVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G
Sbjct: 155 FVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 214
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR-NPPTPYFLDQN 414
D WT T D LSAQ+EHT++VTD GCEILT R + P + +
Sbjct: 215 TMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHD 262
Score = 93.4 bits (233), Expect = 3e-21
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 648 CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
S VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK
Sbjct: 161 FSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKK 211
Score = 91.4 bits (228), Expect = 1e-20
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
VR YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK
Sbjct: 164 VREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKK 211
Score = 85.7 bits (213), Expect = 1e-18
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIP-DLRPLANGDICN 583
E+ + L Y+ +P+S C S+NEV+CHGIP D + L +GDI N
Sbjct: 51 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVN 94
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 274 bits (704), Expect = 4e-87
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+DVTV G++GD + + +G+V+ K+L+QVT++ + K I++V+PG K +IG IQ
Sbjct: 97 IDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQS 156
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
+A+ H YSVVR Y GHGI R+FH PSI +Y +N +K G FT+EPMI+ G++
Sbjct: 157 YAEKHNYSVVRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTI 216
Query: 368 LW-PDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR--NPPTPYF 410
L D WT T D LSAQFEHT+ VT G EI T P +
Sbjct: 217 LSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFTLSPKKLDYPPY 262
Score = 92.2 bits (230), Expect = 5e-21
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 648 CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
S VR Y GHGI R+FH PSI +Y +N +K G FT+EPMI+ G
Sbjct: 163 YSVVRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNY 213
Score = 90.7 bits (226), Expect = 2e-20
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
VR Y GHGI R+FH PSI +Y +N +K G FT+EPMI+ G
Sbjct: 166 VRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNY 213
Score = 89.5 bits (223), Expect = 5e-20
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
P+PLNY FP+S CTS+N V+CHGIP+ +PL NGDI N
Sbjct: 50 NFITSHNAIPAPLNYKGFPKSICTSINHVVCHGIPNDKPLKNGDIVN 96
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 241 bits (617), Expect = 1e-74
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVS-EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
+DV+ GY+ D +F++GE +K+ V + AI VKPG K IG +
Sbjct: 92 IDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVH 151
Query: 307 RHAQAHGYSVVRSYCGHGIHRLFHTAPS-IPHYAKNKAVGVMKPGHSFTIEPMISQGSWR 365
A+ + V+++ GHG+ H AP+ + +Y K ++ G IEP IS +
Sbjct: 152 NTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASF 211
Query: 366 DELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARN 404
++W T D AQ EHT++VT G + T
Sbjct: 212 VTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIE 250
Score = 84.1 bits (209), Expect = 3e-18
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 539 CVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
E +P++ FP C SVNE + HGIP R + GD+ N
Sbjct: 47 FEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVN 91
Score = 74.1 bits (183), Expect = 7e-15
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 648 CSQVRSYCGHGIHRLFHTAPS-IPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
+++ GHG+ H AP+ + +Y K ++ G IEP IS
Sbjct: 159 LKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNAS 210
Score = 72.5 bits (179), Expect = 3e-14
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 443 VRSYCGHGIHRLFHTAPS-IPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
+++ GHG+ H AP+ + +Y K ++ G IEP IS
Sbjct: 162 IKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNAS 210
Score = 35.6 bits (83), Expect = 0.041
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 733 VMKPGHSFTIEPMISQGKP 751
++ G IEP IS
Sbjct: 192 LLTEGMVLAIEPFISSNAS 210
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 235 bits (602), Expect = 3e-72
Identities = 69/156 (44%), Positives = 101/156 (64%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
VDV ++G +GD T+++GE E K+LV+VT E L+KAIK++KPG + ++ + IQ
Sbjct: 106 VDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQE 165
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
++ G++V+R Y GHG+ R H P IP+Y V++ G + IEPM+S+G WR
Sbjct: 166 TVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVV 225
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR 403
+ D WTAVT+DG A FEHT+L+T+ G EILT
Sbjct: 226 VKEDGWTAVTVDGSRCAHFEHTILITENGAEILTKE 261
Score = 72.9 bits (180), Expect = 2e-14
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 539 CVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDL-RPLANGDICN 583
+ P+ Y + + C SVNE + HG+P + GDI +
Sbjct: 60 FKKLRVKPAFKGYGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVS 105
Score = 71.0 bits (175), Expect = 1e-13
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 648 CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
+ +R Y GHG+ R H P IP+Y V++ G + IEPM+S+G
Sbjct: 172 FNVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDW 222
Score = 70.2 bits (173), Expect = 2e-13
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
+R Y GHG+ R H P IP+Y V++ G + IEPM+S+G
Sbjct: 175 IRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDW 222
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 235 bits (602), Expect = 4e-72
Identities = 61/162 (37%), Positives = 94/162 (58%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
VD+ V +G D ++++GE + +L++VT + L I+ + G + +IG+ IQ
Sbjct: 93 VDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKALYLGIEQAQVGNRIGDIGHAIQT 152
Query: 308 HAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDE 367
+ + GY VVR + GHGI H +P IPHY + +K G TIEPM++ G+WR +
Sbjct: 153 YVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNTGTWRMK 212
Query: 368 LWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTPY 409
+ P+ WTA T DG LS Q+EH+L +T G ILT++ Y
Sbjct: 213 MDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILTSQGEELTY 254
Score = 78.0 bits (193), Expect = 5e-16
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICN 583
+ + Y + + C S+N+ ICHG P + L +GD+
Sbjct: 49 ESHGGVAAQIGYEGYKYATCCSINDEICHGFPRKKVLKDGDLIK 92
Score = 72.9 bits (180), Expect = 2e-14
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 648 CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
VR + GHGI H +P IPHY + +K G TIEPM++ G
Sbjct: 159 YGVVRDFVGHGIGPTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNTGTW 209
Score = 71.8 bits (177), Expect = 6e-14
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
VR + GHGI H +P IPHY + +K G TIEPM++ G
Sbjct: 162 VRDFVGHGIGPTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNTGTW 209
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 217 bits (556), Expect = 2e-65
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 6/162 (3%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+D G+HGD TF +G V + L + T ++ I + PG + ++ + I+
Sbjct: 124 IDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIEL 183
Query: 308 HAQA------HGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQ 361
+A + +V Y GHGI R H P +P+ ++ G IEPM++
Sbjct: 184 GTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDPFLPNEGAPGKGPLLAVGSVLAIEPMLTL 243
Query: 362 GSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTAR 403
G+ + + D WT VT DG +A +EHT+ VT+ G ILT R
Sbjct: 244 GTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRILTMR 285
Score = 99.2 bits (248), Expect = 4e-23
Identities = 43/185 (23%), Positives = 65/185 (35%), Gaps = 43/185 (23%)
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIP-DLRPLAN--------GDICNGKH--QC 588
E PS L Y+ FP S C+SVN+ + HGIP LA+ G I +G H
Sbjct: 79 REAGAVPSFLGYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSA 138
Query: 589 FMLPRHVKSRSEEKQVEPPPAELISMEFSSRVCE----------TPGCNQV----AKLQC 634
+ V + + L PG N++ ++
Sbjct: 139 WTFA--VGTVIPSDE------ALS------EATRLSMEAGIAAMIPG-NRLTDVSHAIE- 182
Query: 635 PTCVKLSIQGSYF-CSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
+ + + V Y GHGI R H P +P+ ++ G IEPM+
Sbjct: 183 -LGTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDPFLPNEGAPGKGPLLAVGSVLAIEPML 241
Query: 694 SQGKP 698
+ G
Sbjct: 242 TLGTT 246
Score = 66.5 bits (163), Expect = 4e-12
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 443 VRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 490
V Y GHGI R H P +P+ ++ G IEPM++ G
Sbjct: 199 VDGYGGHGIGRSMHLDPFLPNEGAPGKGPLLAVGSVLAIEPMLTLGTT 246
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 136 bits (345), Expect = 7e-36
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 231 FSPLTKWSLLLGLGTTV-VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAI 289
++P + +L G + +DV V G+ D T +G + +L++ E L+ AI
Sbjct: 63 YTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAKEALNAAI 119
Query: 290 KIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMK 348
+ + G + +E+G I+ + G+ + + GH I R H SIP+ + V+K
Sbjct: 120 SVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYVLK 179
Query: 349 PGHSFTIEPMISQGSWRDELWPDKWT-AVTIDGLLSAQFEHTLL 391
G F IEP + G+ + P D + LL
Sbjct: 180 EGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDVPVRVAQARFLL 223
Score = 85.0 bits (211), Expect = 3e-18
Identities = 36/193 (18%), Positives = 55/193 (28%), Gaps = 57/193 (29%)
Query: 554 FPRSCCTSVNEVICHGIP---DLRPLANGDIC--------NGKH--QCFMLPRHVKSRSE 600
FP S+NE+ H P D L GD +G +
Sbjct: 50 FP--VNLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVR-------- 99
Query: 601 EKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQG---------------S 645
V EL+ + AK + ++ G
Sbjct: 100 ---VGMEEDELM---------------EAAKEALNAAISVARAGVEIKELGKAIENEIRK 141
Query: 646 YFCSQVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNP 704
+ + GH I R H SIP+ + V+K G F IEP + G + P
Sbjct: 142 RGFKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGAGQVIEVP 201
Query: 705 SETHYHHITRATL 717
Y ++ +
Sbjct: 202 PTLIYMYVRDVPV 214
Score = 63.4 bits (155), Expect = 4e-11
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 443 VRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHY 501
+ + GH I R H SIP+ + V+K G F IEP + G + P Y
Sbjct: 147 IVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIY 206
Score = 44.2 bits (105), Expect = 8e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILT 401
I + AQFEHT++V + T
Sbjct: 269 KEIRNGIVAQFEHTIIVEKDSVIVTT 294
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 131 bits (332), Expect = 3e-33
Identities = 20/152 (13%), Positives = 57/152 (37%), Gaps = 11/152 (7%)
Query: 248 VDVTVFHRGYHGDLNETFLLG-----EVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIG 302
+D+ V G+ ++ TF++ +V+ +++ C + A+++VKPG + ++
Sbjct: 115 IDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVT 174
Query: 303 NVIQRHAQAHGYSVVRSYCGHGIHRLFHTAP-SIP-----HYAKNKAVGVMKPGHSFTIE 356
+ A + + + H + + +I K+ + + ++
Sbjct: 175 EAWNKVAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVD 234
Query: 357 PMISQGSWRDELWPDKWTAVTIDGLLSAQFEH 388
++S G + + + T D +
Sbjct: 235 VLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKM 266
Score = 81.7 bits (202), Expect = 1e-16
Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 41/208 (19%)
Query: 545 YPSPLNYYEFPRSCCTSVNEVICHGIP----DLRPLANGDICN---GKH-------QCFM 590
FP SVN +CH P L GD+ G H
Sbjct: 74 EKEMKKGIAFP--TSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHT 131
Query: 591 LPRHVKSRSEEKQVEPPPAELI-----SMEFSSRVCETPGCNQVAKLQCPTCVKLSIQG- 644
V ++ QV A++I E + R+ + PG + V +
Sbjct: 132 ---FVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVK-PG----NQNTQ---VTEAWNKV 180
Query: 645 --SYFCSQVRSYCGHGIHRLFHTAP-SIP-----HYAKNKAVGVMKPGHSFTIEPMISQG 696
S+ C+ + H + + +I K+ + + ++ ++S G
Sbjct: 181 AHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSG 240
Query: 697 KPLFMTNPSETHYHHITRATLLSLHLSS 724
+ T + + L + +
Sbjct: 241 EGKAKDAGQRTTIYKRDPSKQYGLKMKT 268
Score = 53.6 bits (129), Expect = 1e-07
Identities = 10/117 (8%), Positives = 33/117 (28%), Gaps = 13/117 (11%)
Query: 443 VRSYCGHGIHRLFHTAP-SIP-----HYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNP 496
+ H + + +I K+ + + ++ ++S G+
Sbjct: 189 IEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAG 248
Query: 497 SETHYHHVTSLHTVKSPLLTVPSIKPL---CNNNNNCLIPFSPQACVERECYPSPLN 550
T + L + + + + + PF+ +A + + +
Sbjct: 249 QRTTIYKRDPSKQYG---LKMKTSRAFFSEVERRFDAM-PFTLRAFEDEKKARMGVV 301
Score = 45.9 bits (109), Expect = 3e-05
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKA 435
+G AQF+ T+L+ G +T P P + + +++ +L
Sbjct: 316 YEKEGEFVAQFKFTVLLMPNGPMRIT-SGPFEPDLYKSEMEVQDAELKALLQSSASRKTQ 374
Query: 436 PKN 438
K
Sbjct: 375 KKK 377
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 101 bits (253), Expect = 8e-23
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 17/158 (10%)
Query: 231 FSPLTKWSLLLGLGTTV-VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAI 289
++P + +L +D G D T + L++ + + I
Sbjct: 232 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTV---TFNPKYDTLLKAVKDATNTGI 288
Query: 290 KIVKPGEKYREIGNVIQRHAQAHGYSV---------VRSYCGHGIHR-LFHTAPSIPHYA 339
K + ++G IQ +++ + +R+ GH I + H ++P
Sbjct: 289 KCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVK 348
Query: 340 KNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVT 377
+A M+ G + IE S G + D +
Sbjct: 349 GGEAT-RMEEGEVYAIETFGSTGKGV--VHDDMECSHY 383
Score = 83.8 bits (207), Expect = 4e-17
Identities = 38/206 (18%), Positives = 62/206 (30%), Gaps = 45/206 (21%)
Query: 546 PSPLNYYEFPRSCCTSVNEVICHGIP---DLRPLANGDIC--------NGKH--QCFMLP 592
FP S+N H P D L DIC +G+ F +
Sbjct: 211 NGLNAGLAFP--TGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVT 268
Query: 593 RHVKSRSEEKQVEPPPAELI------------SMEFSSRVCETPGCNQVAKLQCPTCVKL 640
P L+ R+C+ Q + ++
Sbjct: 269 -----------FNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQ----EVMESYEV 313
Query: 641 SIQG-SYFCSQVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKP 698
I G +Y +R+ GH I + H ++P +A M+ G + IE S GK
Sbjct: 314 EIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEAT-RMEEGEVYAIETFGSTGKG 372
Query: 699 LFMTNPSETHYHHITRATLLSLHLSS 724
+ + +HY + + L
Sbjct: 373 VVHDDMECSHYMKNFDVGHVPIRLPR 398
Score = 59.5 bits (144), Expect = 2e-09
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 443 VRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHY 501
+R+ GH I + H ++P +A M+ G + IE S GK + + +HY
Sbjct: 325 IRNLNGHSIGQYRIHAGKTVPIVKGGEAT-RMEEGEVYAIETFGSTGKGVVHDDMECSHY 383
Query: 502 HHVTSLHTVKSPLLTVPSIKPLCNNNNNCLIPFSP 536
+ V L + + N N L F
Sbjct: 384 MKNFDVGHVPIRLPRTKHLLNVINENFGTL-AFCR 417
Score = 41.4 bits (97), Expect = 0.001
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILT 401
I G +AQFEHT+L+ T E+++
Sbjct: 448 CDIKGSYTAQFEHTILLRPTCKEVVS 473
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 97.5 bits (243), Expect = 4e-22
Identities = 25/156 (16%), Positives = 45/156 (28%), Gaps = 25/156 (16%)
Query: 248 VDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
+D G D T E+ + L+ E + IK + + +IG I
Sbjct: 131 IDFGTHSDGRIMDSAFTV---AFKENLEPLLVAAREGTETGIKSLGVDVRVCDIGRDINE 187
Query: 308 HAQAHGYSV---------VRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 357
++ + + GH I + H SIP N+ +K + +E
Sbjct: 188 VISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAV-NNRDTTRIKGDSFYAVET 246
Query: 358 MISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVT 393
+ G D + F +
Sbjct: 247 FATTGKGS-----------IDDRPPCSHFVLNTYKS 271
Score = 73.7 bits (181), Expect = 4e-14
Identities = 33/204 (16%), Positives = 57/204 (27%), Gaps = 47/204 (23%)
Query: 542 RECYPSPLNY-YEFPRSCCTSVNEVICHGIP----DLRPLANGDIC--------NGKH-- 586
R N FP S+N H L D+ +G+
Sbjct: 86 RTLLKGERNNGIGFP--AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMD 143
Query: 587 QCFMLPRHVKSRSEEKQVEPPPAELI------------SMEFSSRVCETPGCNQVAKLQC 634
F + + L+ S+ RVC+ +
Sbjct: 144 SAFTVA-----------FKENLEPLLVAAREGTETGIKSLGVDVRVCDIGRDIN----EV 188
Query: 635 PTCVKLSIQG-SYFCSQVRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPM 692
+ ++ I G + + GH I + H SIP N+ +K + +E
Sbjct: 189 ISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAV-NNRDTTRIKGDSFYAVETF 247
Query: 693 ISQGKPLFMTNPSETHYHHITRAT 716
+ GK P +H+ T +
Sbjct: 248 ATTGKGSIDDRPPCSHFVLNTYKS 271
Score = 59.8 bits (145), Expect = 1e-09
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 443 VRSYCGHGIHR-LFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHY 501
+ GH I + H SIP N+ +K + +E + GK P +H+
Sbjct: 206 ISDLHGHSISQFRIHGGISIPAV-NNRDTTRIKGDSFYAVETFATTGKGSIDDRPPCSHF 264
Query: 502 HHVTSLHTVKSPLLTVPSIKPLCN--NNNNCLIPFSPQ 537
+T KS L + + ++ +PFSP+
Sbjct: 265 VL----NTYKSRKLFNKDLIKVYEFVKDSLGTLPFSPR 298
Score = 41.3 bits (97), Expect = 0.001
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 376 VTIDGLLSAQFEHTLLVTDTGCEILT 401
IDG AQFEHT+ +++ G E+LT
Sbjct: 330 NDIDGCKVAQFEHTVYLSEHGKEVLT 355
Score = 34.4 bits (79), Expect = 0.12
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 732 GVMKPGHSFTIEPMISQGKPLFMTNPSETHYHHVT 766
+K + +E + GK P +H+ T
Sbjct: 234 TRIKGDSFYAVETFATTGKGSIDDRPPCSHFVLNT 268
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 94.3 bits (235), Expect = 9e-21
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 246 TVVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVI 305
++ GY+ L T L S+ +L QV E + +K++KPG + +I +
Sbjct: 245 LSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIAREL 304
Query: 306 QRHAQAHGYSVVRSY-CGHGIHRLFHTAPSI-PHYAKNKAVGVMKPGHSFTIEPMISQGS 363
H R++ GH L H + V++PG ++EPMI
Sbjct: 305 NEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMI---- 360
Query: 364 WRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
E P L+V + G E +T
Sbjct: 361 MLPEGLPGAG-GYRE--------HDILIVNENGAENIT 389
Score = 36.1 bits (84), Expect = 0.041
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 448 GHGIHRLFHTAPSI-PHYAKNKAVGVMKPGHSFTIEPMI 485
GH L H + V++PG ++EPMI
Sbjct: 322 GHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMI 360
Score = 36.1 bits (84), Expect = 0.041
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 656 GHGIHRLFHTAPSI-PHYAKNKAVGVMKPGHSFTIEPMI 693
GH L H + V++PG ++EPMI
Sbjct: 322 GHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMI 360
Score = 29.6 bits (67), Expect = 3.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 733 VMKPGHSFTIEPMI 746
V++PG ++EPMI
Sbjct: 347 VLEPGMVVSMEPMI 360
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 94.3 bits (235), Expect = 1e-20
Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 246 TVVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVI 305
++ GY+ L T L ZV + + ++ Z + ++++KPG + ++I + +
Sbjct: 245 LSLNCFPMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASEL 304
Query: 306 QRHAQAHGYSVVRSY-CGHGIHRLFHTAPSIPHYAKNKAV-GVMKPGHSFTIEPMISQGS 363
+ R++ GH L H + + V++PG ++EPM+
Sbjct: 305 NBMYRZWDLLRYRTFGYGHSFGVLBHYYGREAGVELREDIZTVLEPGMVVSMEPMV---- 360
Query: 364 WRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
E P L++ + E +T
Sbjct: 361 MBPEGEPGAG-GYRE--------HDILVIKENBTENIT 389
Score = 33.4 bits (77), Expect = 0.25
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 447 CGHGIHRLFHTAPSIPHYAKNKAV-GVMKPGHSFTIEPMI 485
GH L H + + V++PG ++EPM+
Sbjct: 321 YGHSFGVLBHYYGREAGVELREDIZTVLEPGMVVSMEPMV 360
Score = 33.4 bits (77), Expect = 0.25
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 655 CGHGIHRLFHTAPSIPHYAKNKAV-GVMKPGHSFTIEPMI 693
GH L H + + V++PG ++EPM+
Sbjct: 321 YGHSFGVLBHYYGREAGVELREDIZTVLEPGMVVSMEPMV 360
Score = 30.4 bits (69), Expect = 2.6
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 708 HYHHITRATLLSLHLSSHDVIVLFGVMKPGHSFTIEPMI 746
H+ R + L V+ +PG ++EPM+
Sbjct: 328 LBHYYGREAGVELREDIZTVL------EPGMVVSMEPMV 360
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 76.5 bits (189), Expect = 4e-15
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 28/159 (17%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
V+D + Y D+ +GE S+ K++ + E ++A+KI K G + + +V +
Sbjct: 216 VIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAR 275
Query: 307 RHAQAHGYSVVRSY----CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 362
+ GY + GHGI H P+I +N + FT+EP I
Sbjct: 276 EFIREKGYG---EFFGHSLGHGIGLEVHEGPAI--SFRND--SPLPENVVFTVEPGI--- 325
Query: 363 SWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
K+ + I E +++ + GCEILT
Sbjct: 326 -----YLEGKF-GIRI--------EEDVVLKEQGCEILT 350
Score = 32.2 bits (74), Expect = 0.71
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
GHGI H P+I +N + FT+EP I
Sbjct: 292 GHGIGLEVHEGPAI--SFRND--SPLPENVVFTVEPGI 325
Score = 32.2 bits (74), Expect = 0.71
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 656 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
GHGI H P+I +N + FT+EP I
Sbjct: 292 GHGIGLEVHEGPAI--SFRND--SPLPENVVFTVEPGI 325
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 76.1 bits (188), Expect = 7e-15
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 32/161 (19%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
+D +++GY D+ T +GE S+ K++ + E + + +K G RE + +
Sbjct: 213 TLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTR 272
Query: 307 RHAQAHGY------SVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMIS 360
+ GY S GHGI H AP + ++ V++PG + T+EP I
Sbjct: 273 DYITEKGYGEYFGHST-----GHGIGLEIHEAPGL--AFRSD--TVLEPGMAVTVEPGI- 322
Query: 361 QGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
P V I E ++VT G E++T
Sbjct: 323 -------YIPGIG-GVRI--------EDDIIVTSEGNEVIT 347
Score = 31.4 bits (72), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 483
GHGI H AP + ++ V++PG + T+EP
Sbjct: 289 GHGIGLEIHEAPGL--AFRSD--TVLEPGMAVTVEP 320
Score = 31.4 bits (72), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 656 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 691
GHGI H AP + ++ V++PG + T+EP
Sbjct: 289 GHGIGLEIHEAPGL--AFRSD--TVLEPGMAVTVEP 320
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 75.7 bits (187), Expect = 8e-15
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
V+D+ ++ Y+ D+ T ++G +E K++ ++ E KA++ KPG +E+ ++ +
Sbjct: 210 VIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIAR 269
Query: 307 RHAQAHGYSVVRSY----CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 362
+GY Y GHG+ H P + ++ V++ G TIEP I
Sbjct: 270 NIIAEYGYG---EYFNHSLGHGVGLEVHEWPRV--SQYDE--TVLREGMVITIEPGI--- 319
Query: 363 SWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
P V I E T+L+T G + LT
Sbjct: 320 -----YIPKIG-GVRI--------EDTILITKNGSKRLT 344
Score = 31.8 bits (73), Expect = 0.81
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 483
GHG+ H P + ++ V++ G TIEP
Sbjct: 286 GHGVGLEVHEWPRV--SQYDE--TVLREGMVITIEP 317
Score = 31.8 bits (73), Expect = 0.81
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 656 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 691
GHG+ H P + ++ V++ G TIEP
Sbjct: 286 GHGVGLEVHEWPRV--SQYDE--TVLREGMVITIEP 317
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 75.7 bits (186), Expect = 2e-14
Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 22/162 (13%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIG---- 302
+ + ++ Y ++ T+L SE +K K + + G +I
Sbjct: 282 LCSLGFRYKSYCSNVGRTYLFDPDSEQ-QKNYSFLVALQKKLFEYCRDGAVIGDIYTKIL 340
Query: 303 NVIQRHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP---MI 359
+I+ + VR+ G GI F + + + AKN V ++ G + + +
Sbjct: 341 GLIRAKRPDLEPNFVRN-LGAGIGIEFRESSLLVN-AKNPRV--LQAGMTLNLSIGFGNL 396
Query: 360 SQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
++ K A+ + T+ +T + + T
Sbjct: 397 INPHPKNSQS--KEYALLL--------IDTIQITRSDPIVFT 428
Score = 32.2 bits (73), Expect = 0.66
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 447 CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 483
G GI F + + + AKN V ++ G + +
Sbjct: 358 LGAGIGIEFRESSLLVN-AKNPRV--LQAGMTLNLSI 391
Score = 32.2 bits (73), Expect = 0.66
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 655 CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 691
G GI F + + + AKN V ++ G + +
Sbjct: 358 LGAGIGIEFRESSLLVN-AKNPRV--LQAGMTLNLSI 391
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 74.6 bits (184), Expect = 2e-14
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 29/160 (18%)
Query: 247 VVDV-TVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVI 305
VVD+ + GY+ D T+ +G+ S + A+ V+PG ++
Sbjct: 232 VVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAA 291
Query: 306 QRHAQAHGYSVVRSY----CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQ 361
+ G + Y GHGI H P I A N+ + G +F+IEP I
Sbjct: 292 RDVLADAGLA---EYFVHRTGHGIGLCVHEEPYIV--AGNE--LPLVAGMAFSIEPGIY- 343
Query: 362 GSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
+P +W I E ++VT+ G +
Sbjct: 344 -------FPGRW-GARI--------EDIVVVTENGALSVN 367
Score = 36.1 bits (84), Expect = 0.039
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
GHGI H P I A N+ + G +F+IEP I
Sbjct: 309 GHGIGLCVHEEPYIV--AGNE--LPLVAGMAFSIEPGI 342
Score = 36.1 bits (84), Expect = 0.039
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 656 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
GHGI H P I A N+ + G +F+IEP I
Sbjct: 309 GHGIGLCVHEEPYIV--AGNE--LPLVAGMAFSIEPGI 342
Score = 28.8 bits (65), Expect = 6.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 732 GVMKPGHSFTIEPMI 746
+ G +F+IEP I
Sbjct: 328 LPLVAGMAFSIEPGI 342
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 74.2 bits (183), Expect = 2e-14
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 28/159 (17%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
++D +GY D+ T LGE+ E K+ +V + + A K V+ G K +++ + +
Sbjct: 213 ILDYGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAR 272
Query: 307 RHAQAHGYSVVRSY----CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQG 362
GY Y GHG+ H P I + ++K G +FTIEP I
Sbjct: 273 EVISKAGYG---EYFIHRTGHGLGLDVHEEPYIG--PDGE--VILKNGMTFTIEPGI--- 322
Query: 363 SWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
P V I E ++V + LT
Sbjct: 323 -----YVPGLG-GVRI--------EDDIVVDEGKGRRLT 347
Score = 33.0 bits (76), Expect = 0.38
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
GHG+ H P I + ++K G +FTIEP I
Sbjct: 289 GHGLGLDVHEEPYIG--PDGE--VILKNGMTFTIEPGI 322
Score = 33.0 bits (76), Expect = 0.38
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 656 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
GHG+ H P I + ++K G +FTIEP I
Sbjct: 289 GHGLGLDVHEEPYIG--PDGE--VILKNGMTFTIEPGI 322
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 74.6 bits (183), Expect = 4e-14
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 25/156 (16%)
Query: 252 VFHRGYHGDLNETFLLGEVSEHAKK--LVQVTWECLDKAIKIVKPGEKYREIGNVIQRHA 309
V G D++ ++ +G+ A +Q E + ++++KPG E+ H
Sbjct: 322 VGAYGICTDISRSWWIGDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPEL--SANTHV 379
Query: 310 QAHGYSVVRSYC-GHGIHRLFHTAPSIPHYAKNKAVG---VMKPGHSFTIEPMISQGSWR 365
+ + C HG+ L P + + A ++PG + +E +IS
Sbjct: 380 LDAKFQKQKYGCLMHGV-GLCDEWPLVAYPDHAVAGAYDYPLEPGMTLCVEALIS----- 433
Query: 366 DELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
++ + E +L+T+ G E LT
Sbjct: 434 ---EEGGDFSIKL--------EDQVLITEDGYENLT 458
Score = 35.7 bits (82), Expect = 0.061
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVG---VMKPGHSFTIEPMI 485
HG+ L P + + A ++PG + +E +I
Sbjct: 393 MHGV-GLCDEWPLVAYPDHAVAGAYDYPLEPGMTLCVEALI 432
Score = 35.7 bits (82), Expect = 0.061
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 656 GHGIHRLFHTAPSIPHYAKNKAVG---VMKPGHSFTIEPMI 693
HG+ L P + + A ++PG + +E +I
Sbjct: 393 MHGV-GLCDEWPLVAYPDHAVAGAYDYPLEPGMTLCVEALI 432
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 64.3 bits (156), Expect = 6e-11
Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 25/192 (13%)
Query: 244 GTTVVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIK-IVKPGEKYREIG 302
G + + + Y ++ TFL+ SE + + I+KPG +E+
Sbjct: 286 GCILASCGIRYNNYCSNITRTFLIDP-SEEMANNYDFLLTLQKEIVTNILKPGRTPKEVY 344
Query: 303 NVIQRHAQAHGYSVVRSY---CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 359
+ + + +V ++ G I F + I + + ++ G F I
Sbjct: 345 ESVIEYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYR--KIQRGDCFNISFGF 402
Query: 360 SQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCE--ILTARNPPTP-----YFLD 412
+ + +D + + A+ + T+ + E YF +
Sbjct: 403 N--NLKDSQSANNY-ALQL--------ADTVQIPLDETEPPRFLTNYTKAKSQISFYFNN 451
Query: 413 QNAKKKTTKIRP 424
+ K P
Sbjct: 452 EEEDNNKKKSSP 463
Score = 30.0 bits (67), Expect = 3.7
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 447 CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 483
G I F + I + + ++ G F I
Sbjct: 366 IGSLIGLEFRDSNFILNVKNDYRK--IQRGDCFNISF 400
Score = 30.0 bits (67), Expect = 3.7
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 655 CGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEP 691
G I F + I + + ++ G F I
Sbjct: 366 IGSLIGLEFRDSNFILNVKNDYRK--IQRGDCFNISF 400
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 46.3 bits (110), Expect = 3e-05
Identities = 31/226 (13%), Positives = 58/226 (25%), Gaps = 59/226 (26%)
Query: 255 RGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGY 314
GY D+ T+ E +LV + + + PG+ Y E+ H H
Sbjct: 250 NGYAADITRTYDFTGEGEF-AELVATMKQHQIALMNQLAPGKLYGEL------HLDCH-Q 301
Query: 315 SVVRSYCGHGI-------------------HRLFH-------------------TAPSIP 336
V ++ I H L H
Sbjct: 302 RVAQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHIGLQVHDVGGFMADEQGAHQEPPE 361
Query: 337 HYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQF--------EH 388
+ + ++ FTIEP + I+ A+ E
Sbjct: 362 GHPFLRCTRKIEANQVFTIEPGLYFIDSLLGDLAATDNNQHINWDKVAELKPFGGIRIED 421
Query: 389 TLLVTDTGCEILTARNPPTPYFLDQ----NAKKKTTKIRPILLQIP 430
++V + E +T R +A + + ++ +
Sbjct: 422 NIIVHEDSLENMT-RELRLRLTTHSLRGLSAPQFSINDPAVMSEYS 466
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 4e-05
Identities = 43/305 (14%), Positives = 85/305 (27%), Gaps = 81/305 (26%)
Query: 24 CVKLSIQGSYFCSQVSRLPVLHHSPCLVPKYCQTYVALTVSRV--TGNLTKYCIKLPKLE 81
+ S+ + Q RL ++ + KY VSR+ L + ++L +
Sbjct: 102 QRQPSMMTRMYIEQRDRL---YNDNQVFAKY-------NVSRLQPYLKLRQALLELRPAK 151
Query: 82 SIVFYSEFGNKNHPINRIGRYIQFAYLSQVTKYSTYHNLKHQELWFFCLIPFLVFLITEG 141
+++ G G+ + K Q C + F +F +
Sbjct: 152 NVLIDGVLG--------SGK--------TWVALDVCLSYKVQ-----CKMDFKIFWLNLK 190
Query: 142 SGTSDKNGYDPWP--YHKFTGNLRPWPQTPRREVPVHIGLPDYAIHKHGIPLSEQDYKRS 199
+ S + + ++ N + + I + + L + Y+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRRL---LKSKPYENC 246
Query: 200 GLITVLND--DEK--EGLRVACKVIRFSFWMNGKLFSPLTKWSLLLGLGTT----VVDVT 251
L+ VL + + K ++CK+ L TT V D
Sbjct: 247 -LL-VLLNVQNAKAWNAFNLSCKI-----------------------LLTTRFKQVTDFL 281
Query: 252 VFHRGYH---GDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKP------GEKYREIG 302
H + T EV K + + L + + P E R+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 303 NVIQR 307
Sbjct: 342 ATWDN 346
Score = 40.2 bits (93), Expect = 0.003
Identities = 86/616 (13%), Positives = 160/616 (25%), Gaps = 194/616 (31%)
Query: 185 HKHGI--PLSEQDYKRSGLITVLNDDEKEGLRVACKVI---------------------- 220
H H + E Y+ +++V D + CK +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 221 ----RFSFWMNGKLFSPLTKWSLLLGLGTTVVDVTVFHRGYHGDLNETFLLGEVSEHAKK 276
FW LL +V F +N FL+ +
Sbjct: 61 VSGTLRLFW-------------TLLSKQEEMVQ--KFVEEVL-RINYKFLMSPIKT---- 100
Query: 277 LVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHTAPSIP 336
E ++ E+ + N Q A+ Y+V R +L
Sbjct: 101 ------EQRQPSMMTRMYIEQRDRLYNDNQVFAK---YNVSRL---QPYLKL-------- 140
Query: 337 HYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTG 396
+A+ ++P + I+ ++ G K V +D LS + + +
Sbjct: 141 ----RQALLELRPAKNVLIDGVLGSG---------KTW-VALDVCLSYKVQCKM-----D 181
Query: 397 CEI--LTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYCGHGIHRL 454
+I L +N +P + + +K +I P + K + +++ + RL
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE----LRRL 237
Query: 455 FHTAPSIPHYAKNKAV--GVMKPGH--SFTIEPMISQGKPLFMTNP-------SETHYHH 503
+ P Y V V +F + K L T S H
Sbjct: 238 LKSKP----YENCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTTH 288
Query: 504 VTSLHTVKSPLLTVPSIKPLCNNNNNCLIPFSP-QAC------------VERECYPSPLN 550
++ H + LT +K L +C P + R+ + +
Sbjct: 289 ISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWD 345
Query: 551 YYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRSEEKQVEPPPAE 610
++ C + +I + L P + + + P P
Sbjct: 346 NWK--HVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFPPSAHI----------PTI 390
Query: 611 LISM---EFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCGHGIHRLFHTAP 667
L+S+ + V K S+ S I+
Sbjct: 391 LLSLIWFDVIKSDVM-----VVVNK----LHKYSLVEKQPKESTISI--PSIYLELKVKL 439
Query: 668 S---------IPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHYHHITRATLL 718
+ HY K + + Y HI
Sbjct: 440 ENEYALHRSIVDHYNIPKTF----DSDDLIPPYL------------DQYFYSHIGH---- 479
Query: 719 SLHLSS---HDVIVLF 731
HL + + + LF
Sbjct: 480 --HLKNIEHPERMTLF 493
Score = 37.5 bits (86), Expect = 0.019
Identities = 53/347 (15%), Positives = 108/347 (31%), Gaps = 79/347 (22%)
Query: 19 LQCPTCV---KLSIQGSYFCSQVSRLPVLHHSPCLVPKYCQTYVALTVSRVTGNLTK-YC 74
L C + + + + + + HHS L P ++ + + +L +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 75 IKLPKLESIVFYSEFGNKNHPINRIGRYIQFAY--LSQVTKYSTYHNLKHQE-------- 124
P+ SI+ +E ++ + L+ + + S+ + L+ E
Sbjct: 324 TTNPRRLSII--AES-IRDGL-ATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRL 378
Query: 125 ----------------LWFFCLIPFLVFLITEGSGTS---DKNGYDP-WPYHKFTGNLRP 164
+WF +I V ++ +K + L+
Sbjct: 379 SVFPPSAHIPTILLSLIWFD-VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK- 436
Query: 165 WPQTPRREVPVHIGLPD-YAIHK-----HGIPLSEQDYKRS--G--LITVLNDDEKEGLR 214
E +H + D Y I K IP Y S G L + + + R
Sbjct: 437 --VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 215 VACKVIRFSF-WMNGKLFSPLTKWSLLLGLGTTVVDVTVF-------HRGYHGDLN--ET 264
+ + F ++ K+ T W+ + T+ + + Y +N
Sbjct: 495 M----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 265 FL--LGEVSEHAK--KLVQVTWECLDKAIKIVKPGEKYREIGNVIQR 307
FL + E +K L+++ D+AI + E +QR
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAI--------FEEAHKQVQR 589
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 45.7 bits (109), Expect = 4e-05
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 40/178 (22%)
Query: 255 RGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----GNVIQRHA 309
+GY GD+ TF + G+ ++ +++ + E L+ ++++ +PG E+ ++
Sbjct: 266 KGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGL 325
Query: 310 QAHG-----------YSVVRSYCGHGI-HRL---FHTAPSIPHYAKNKAVGVMKPGHSFT 354
G + R + HG+ H L H +++PG T
Sbjct: 326 VKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV----YGQDRSRILEPGMVLT 381
Query: 355 IEP--MISQGSWRDELWPDKW--TAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTP 408
+ P I+ D P+++ + I E +++T+TG E LTA P
Sbjct: 382 VAPGLYIAP----DAEVPEQYRGIGIRI--------EDDIVITETGNENLTASVVKKP 427
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 43.9 bits (104), Expect = 2e-04
Identities = 30/202 (14%), Positives = 55/202 (27%), Gaps = 55/202 (27%)
Query: 255 RGYHGDLNETFLLGEV--SEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAH 312
GY D+ T+ V S + L+Q + + +KPG Y +I H AH
Sbjct: 250 HGYAADITRTYAQEGVHNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDI------HLLAH 303
Query: 313 GYSVVRSYCGHGI-------------------HRLFH-------------------TAPS 334
+ + G+ H + H P+
Sbjct: 304 -DGIAQILHDTGMVNLTPPEIVEMGITRTFFPHGIGHFLGLQVHDVGGLVNDDRGTPKPA 362
Query: 335 IPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQF-------- 386
+ + +++ FTIEP + + I+ +
Sbjct: 363 PDDHPFLRCTRMVEARQVFTIEPGLYFIDSLLRDLKATPASKYINWDTIDAYKPFGGIRI 422
Query: 387 EHTLLVTDTGCEILTARNPPTP 408
E ++V E +T
Sbjct: 423 EDNIIVHRDKNENMTRDLDLNL 444
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 42.8 bits (101), Expect = 3e-04
Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 38/186 (20%)
Query: 255 RGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----GNVIQRHA 309
+ D+ +F G+ + K + + + +KPG + ++ +
Sbjct: 283 YCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEEL 342
Query: 310 QAHG-----------YSVVRSYCGHGI-H------------RLFHTAPSIPHYAKNKAVG 345
G + + HG+ H P +
Sbjct: 343 AHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTAR 402
Query: 346 VMKPGHSFTIEPMISQGSWRDELW-PDKWTAVTIDGLLSAQF--------EHTLLVTDTG 396
++PG T+EP I + D A + + +F E ++VTD+G
Sbjct: 403 HLQPGMVLTVEPGIYFIDHLLDEALADPARASFFNREVLQRFRGFGGVRIEEDVVVTDSG 462
Query: 397 CEILTA 402
E+LT
Sbjct: 463 IELLTC 468
Score = 30.1 bits (68), Expect = 3.1
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 275 KKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSY---CGHGIHRLFHT 331
+ +++ E + +K VK G K E+ ++ + + + G SY CG G +
Sbjct: 197 RYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGEN----- 251
Query: 332 APSIPHYAKNKA 343
++ HY A
Sbjct: 252 -SAVLHYGHAGA 262
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 4e-04
Identities = 77/500 (15%), Positives = 130/500 (26%), Gaps = 191/500 (38%)
Query: 381 LLSAQFEHTLLVTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILL-----------QI 429
L EH LLV P +F+ +++ KI P
Sbjct: 11 LSHGSLEHVLLV------------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 430 PLLAK---------------APKNCL------FQVRSY-CGHGIHRLFHTAPSIPHYAKN 467
L+ K L F+ Y G+ IH L
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLV 117
Query: 468 KAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHYHHVTSLHTVKSPLLTVPSIKPLCNNN 527
K ++K ++ I I +P S S L
Sbjct: 118 KTKELIK---NY-ITARIMAKRPF--DKKSN-------------SALFRA------VGEG 152
Query: 528 NNCLIP-F----SPQACVE--RECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGD 580
N L+ F + E R+ Y + Y+ V ++I L L
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQT---YHVL-------VGDLIKFSAETLSELIRTT 202
Query: 581 ICNGKHQCFMLPRHVKSRSEEKQVEPPPAELISMEFS------------SRVCETPGCNQ 628
+ K F ++ E P L+S+ S + G
Sbjct: 203 LDAEKV--FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT- 259
Query: 629 VAKLQCPTCVKLSIQGSYFCSQVRSYCGHGI--HRLFHTAPSIPHYAKN--KAVGVMKPG 684
P ++ ++G+ + G+ S + + KA+ V+
Sbjct: 260 ------PGELRSYLKGA-------TGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--- 303
Query: 685 HSF-------------TIEPMISQ-------GKPLFM-----------------TN---P 704
F ++ P I + G P M TN P
Sbjct: 304 --FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 705 SETHYHHITRATLLSLHLSSHDVIV------LFGV------MK--PGHSFTIEPMISQGK 750
+ +SL + +++V L+G+ K G + P S+ K
Sbjct: 362 AGKQVE-------ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERK 413
Query: 751 PLFMTN--PSETHYHHVTSL 768
F P + +H + L
Sbjct: 414 LKFSNRFLPVASPFH--SHL 431
Score = 32.3 bits (73), Expect = 0.83
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 30/85 (35%)
Query: 250 VTVFH-------RGYHGDLNETFLLGEVSEHAKKLVQ------VTWE--CLDKAIKIVK- 293
+ V+ R G ++E ++V V WE KA I+
Sbjct: 457 IPVYDTFDGSDLRVLSGSISE------------RIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 294 -PGEKYREIGNVIQRHAQAHGYSVV 317
PG +G + R+ G V+
Sbjct: 505 GPGGASG-LGVLTHRNKDGTGVRVI 528
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 39.1 bits (92), Expect = 0.004
Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 36/167 (21%)
Query: 255 RGYHGDLNETF-LLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREI----GNVIQRHA 309
Y+ D++ TF G S K++ + L + +I+KPG K+ + V+
Sbjct: 262 DYYNADISYTFPANGTFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGC 321
Query: 310 QAHG----YSVVRSYCGHGI-HRL---FHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQ 361
+A G + Y HG+ H L H + V++ G TIEP +
Sbjct: 322 KAVGLIQEDEELSKYYYHGVSHFLGLDTHDVGTYKD-------RVLEEGMVITIEPGL-- 372
Query: 362 GSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTP 408
++ + I E +LVT G E L+
Sbjct: 373 ------YIEEESIGIRI--------EDDILVTKDGHENLSKDIIREV 405
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.70
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 611 LISMEFSSRVCETPGCNQVAKLQCPTC-------VKLSIQGSYFCSQVRSYCGHGI-HRL 662
+++ E + G N L CP C V+ +G C+ CG + +L
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCAL----CGLVLSDKL 56
Query: 663 FHTAP 667
T
Sbjct: 57 VDTRS 61
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.1 bits (64), Expect = 4.3
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 6/93 (6%)
Query: 502 HHVTSLHTVKSPLLTVPSIKPLCNNNNN------CLIPFSPQACVERECYPSPLNYYEFP 555
+ P + VP + + + + CL A E +
Sbjct: 75 LRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTIL 134
Query: 556 RSCCTSVNEVICHGIPDLRPLANGDICNGKHQC 588
+ ++ C NG CN + C
Sbjct: 135 XTPQNAIFFKTCQQAECPGGCRNGGFCNERRIC 167
>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated,
G-protein C receptor, membrane, receptor, transducer,
transmembrane, CE adhesion; HET: NAG; NMR {Mus musculus}
PDB: 2jxa_A*
Length = 106
Score = 27.6 bits (61), Expect = 6.7
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 617 SSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCGHGIHRLFHT 665
CE +L+CP + ++ + + C ++ +
Sbjct: 9 RELACE----GYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENV 53
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 28.6 bits (63), Expect = 8.4
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 588 CFML--PRHVKSRSEEKQVEPPPAELIS--MEFSSRVCETPGCNQVAKLQCPTCVKLSIQ 643
C ++ PR K K++ P I+ +E + R C C +A +C C
Sbjct: 169 CLIIQMPRFGKDFKLFKKIFPSLELNITDLLEDTPRQCRI--CGGLAMYECRECYDDPDI 226
Query: 644 GSYFCSQVRSYCGHGIH 660
+ Q C +H
Sbjct: 227 SAGKIKQFCKTCNTQVH 243
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia,
beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus
scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A*
3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A
1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A
3ddu_A*
Length = 710
Score = 28.7 bits (65), Expect = 8.5
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 10/39 (25%)
Query: 86 YSEFGNKNHPINRIGRYIQFAYLSQVTKYSTYHNLKHQE 124
+++G + F +L KYS HN+K E
Sbjct: 596 TTDYGCSDSKQ-------HFEWLI---KYSPLHNVKLPE 624
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study,
celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Length = 741
Score = 28.7 bits (65), Expect = 9.7
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 10/38 (26%)
Query: 86 YSEFGNKNHPINRIGRYIQFAYLSQVTKYSTYHNLKHQ 123
++G + L +YS YHN++
Sbjct: 617 VDDYGYPEKEA-------DWRVLR---RYSPYHNVRSG 644
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.444
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,945,048
Number of extensions: 717770
Number of successful extensions: 1638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1574
Number of HSP's successfully gapped: 139
Length of query: 769
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 668
Effective length of database: 3,881,772
Effective search space: 2593023696
Effective search space used: 2593023696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)