RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11713
(769 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 147 bits (371), Expect = 2e-40
Identities = 76/159 (47%), Positives = 103/159 (64%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
+DVTV G+HGD ++ F++G+ + ++L ++T E L A+++VKPG REIG IQ
Sbjct: 93 NIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQ 152
Query: 307 RHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRD 366
+ +A G+SVVR YCGHGI R FH P + HY + V+KPG +FTIEPM++ G
Sbjct: 153 KFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEI 212
Query: 367 ELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNP 405
D WT T D LSAQ+EHT++VTD GCEILT R
Sbjct: 213 RTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKD 251
Score = 59.5 bits (143), Expect = 3e-10
Identities = 60/196 (30%), Positives = 84/196 (42%), Gaps = 14/196 (7%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIP-DLRPLANGDICN----GKHQCFMLPRHV 595
E+ + L Y+ +P+S C S+NEV+CHGIP D + L +GDI N F
Sbjct: 50 EQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSK 109
Query: 596 KSRSEEKQVEPPPAELISMEFSSRVCET--PGCNQVAKLQCPTCVKLSIQGSYFCSQVRS 653
+ + I+ E PG N + + S VR
Sbjct: 110 MFIVGKPTIMGERLCRITQESLYLALRMVKPGINL----REIGAAIQKFVEAEGFSVVRE 165
Query: 654 YCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHYHHIT 713
YCGHGI R FH P + HY + V+KPG +FTIEPM++ GK T + T
Sbjct: 166 YCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDG--WTVKT 223
Query: 714 RATLLSLHLSSHDVIV 729
+ LS H ++V
Sbjct: 224 KDRSLSAQY-EHTIVV 238
Score = 53.4 bits (127), Expect = 3e-08
Identities = 49/229 (21%), Positives = 76/229 (33%), Gaps = 26/229 (11%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHT 331
E + ++ E L+ VKPG E+ + + ++V HG
Sbjct: 10 EKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGY------ 63
Query: 332 APSIPHYAKNKAVGVMKPGHSFTIEP----MISQGSWRDELWPDKWTAVTIDGLLSAQFE 387
P + N+ V P + ++ I +D D +
Sbjct: 64 -PKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 122
Query: 388 HTLLVTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYC 447
+ ++ L P A +K + VR YC
Sbjct: 123 LCRITQESLYLALRMVKPGINLREIGAAIQKFVE---------------AEGFSVVREYC 167
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNP 496
GHGI R FH P + HY + V+KPG +FTIEPM++ GK T
Sbjct: 168 GHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK 216
Score = 34.9 bits (79), Expect = 0.027
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 646 YFCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSF-----TIEPMISQGKPLF 700
+ + + + I + A+ ++KPG + I+ +
Sbjct: 103 FHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSV 162
Query: 701 MTNPSETHYHHITRATLLSLHLSSHDVIVLFGVMKPGHSFTIEPMISQGKPLFMTNP 757
+ H I R + +D V+KPG +FTIEPM++ GK T
Sbjct: 163 VREY---CGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK 216
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 140 bits (354), Expect = 3e-38
Identities = 69/155 (44%), Positives = 101/155 (65%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
VDV ++G +GD T+++GE E K+LV+VT E L+KAIK++KPG + ++ + IQ
Sbjct: 93 SVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQ 152
Query: 307 RHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRD 366
++ G++V+R Y GHG+ R H P IP+Y V++ G + IEPM+S+G WR
Sbjct: 153 ETVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRV 212
Query: 367 ELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
+ D WTAVT+DG A FEHT+L+T+ G EILT
Sbjct: 213 VVKEDGWTAVTVDGSRCAHFEHTILITENGAEILT 247
Score = 56.2 bits (134), Expect = 3e-09
Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 6/196 (3%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVK 596
+ + P+ Y + + C SVNE + HG+P + +
Sbjct: 46 EIFKKLRVKPAFKGYGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYG 105
Query: 597 SRSEEKQVEPPPAELISMEFSSRVCETPGCNQV---AKLQCPTCVKLSIQGSYFCSQVRS 653
+ V + +R + +L + S + +R
Sbjct: 106 DAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRD 165
Query: 654 YCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSETHYHHIT 713
Y GHG+ R H P IP+Y V++ G + IEPM+S+G + E + +T
Sbjct: 166 YVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVV--KEDGWTAVT 223
Query: 714 RATLLSLHLSSHDVIV 729
H H +++
Sbjct: 224 VDGSRCAHF-EHTILI 238
Score = 55.4 bits (132), Expect = 6e-09
Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 19/225 (8%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHT 331
E KK + L + K++ PG+ ++ ++ + G + +
Sbjct: 11 EKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVS 70
Query: 332 APSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLL 391
+ V K G +++ + + D T
Sbjct: 71 VNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGD-AAVTYIVGETDERGKELVRVTRE 129
Query: 392 VTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYCGHGI 451
V + +++ + +R Y GHG+
Sbjct: 130 VLEKAIKMIKPGIRLGDVSHCIQETVE------------------SVGFNVIRDYVGHGV 171
Query: 452 HRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNP 496
R H P IP+Y V++ G + IEPM+S+G +
Sbjct: 172 GRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKE 216
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 6/139 (4%)
Query: 621 CETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGV 680
E V + G + + L KA+ +
Sbjct: 82 KEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVT----REVLEKAIKM 137
Query: 681 MKPGHSFTIEPMISQGKPLFMTNPSETHY--HHITRATLLSLHLSSHDVIVLFGVMKPGH 738
+KPG Q + Y H + R + ++ V++ G
Sbjct: 138 IKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGM 197
Query: 739 SFTIEPMISQGKPLFMTNP 757
+ IEPM+S+G +
Sbjct: 198 TLAIEPMVSEGDWRVVVKE 216
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 101 bits (252), Expect = 3e-24
Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 19/162 (11%)
Query: 249 DVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRH 308
F G + + + L++ + + IK + ++G IQ
Sbjct: 139 CKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEV 198
Query: 309 ---------AQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 359
+ + +R+ GH I + A K M+ G + IE
Sbjct: 199 MESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFG 258
Query: 360 SQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
S G V I G +AQFEHT+L+ T E+++
Sbjct: 259 STG----------KGVVDIKGSYTAQFEHTILLRPTCKEVVS 290
Score = 59.9 bits (144), Expect = 3e-10
Identities = 33/237 (13%), Positives = 63/237 (26%), Gaps = 16/237 (6%)
Query: 269 EVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRL 328
E+ ++ + + + +KPG EI ++ ++ G
Sbjct: 55 EIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-LNAGLAFPTG 113
Query: 329 FHTAPSIPHYAKNKAVGVM-KPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFE 387
HY N + + I+ + D LL A +
Sbjct: 114 CSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKD 173
Query: 388 HTLLVTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYC 447
T + + I+ ++ + + +R+
Sbjct: 174 ATNTGIKCAGIDVRLCDV-------------GEAIQEVMESYEVEIDGKTYQVKPIRNLN 220
Query: 448 GHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPSET-HYHH 503
GH I + A K M+ G + IE S GK + S T + H
Sbjct: 221 GHSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVDIKGSYTAQFEH 277
Score = 58.8 bits (141), Expect = 6e-10
Identities = 31/187 (16%), Positives = 48/187 (25%), Gaps = 14/187 (7%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVI-CHGIPDLRPLANGDICNGKHQC------- 588
+ FP C + D L DIC
Sbjct: 93 DCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRII 152
Query: 589 ---FMLPRHVKSRSEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGS 645
F + + K + K V+ I G + + + +
Sbjct: 153 DCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVG--EAIQEVMESYEVEIDGKT 210
Query: 646 YFCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFMTNPS 705
Y +R+ GH I + A K M+ G + IE S GK + S
Sbjct: 211 YQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVDIKGS 270
Query: 706 ET-HYHH 711
T + H
Sbjct: 271 YTAQFEH 277
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 90.6 bits (223), Expect = 7e-21
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKK-LVQVTWECLDKAIKIVKPGEKYREIGNVI 305
+DV+ GY+ D +F++GE + K+ + V + AI VKPG K IG +
Sbjct: 91 NIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAV 150
Query: 306 QRHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGV-MKPGHSFTIEPMISQGSW 364
A+ + V+++ GHG+ H AP+ + + G IEP IS +
Sbjct: 151 HNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNAS 210
Query: 365 RDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
++W T D AQ EHT++VT G + T
Sbjct: 211 FVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTT 247
Score = 36.7 bits (83), Expect = 0.007
Identities = 28/220 (12%), Positives = 62/220 (28%), Gaps = 20/220 (9%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHT 331
+ K++ + + + KPG +E+ N+ + + +G + + + +
Sbjct: 10 QALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCIS 69
Query: 332 APSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLL 391
+ + + + G + D + + +
Sbjct: 70 VNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPM----KQKVCDV 125
Query: 392 VTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYCGHGI 451
T + P T A T +N L +++ GHG+
Sbjct: 126 ATMAFENAIAKVKPGTKLSNIGKAVHNTA---------------RQNDLKVIKNLTGHGV 170
Query: 452 HRLFHTAPSIPHYAKNKAVG-VMKPGHSFTIEPMISQGKP 490
H AP+ + ++ G IEP IS
Sbjct: 171 GLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNAS 210
Score = 34.0 bits (76), Expect = 0.053
Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 7/197 (3%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVK 596
+ E +P++ FP C SVNE + HGIP R + GD+ N +
Sbjct: 45 ELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYAD 104
Query: 597 SRSEEKQVEPPPAELISMEFSSRVCETPGCNQV---AKLQCPTCVKLSIQGSYFCSQVRS 653
+ E + + + +V KL + +++
Sbjct: 105 TGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKN 164
Query: 654 YCGHGIHRLFHTAPSIPHYAKNKAVGV-MKPGHSFTIEPMISQGKPLFMTNPSETHYHHI 712
GHG+ H AP+ + + G IEP IS + +
Sbjct: 165 LTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNA--SFVTEGKNEWAFE 222
Query: 713 TRATLLSLHLSSHDVIV 729
T + H VIV
Sbjct: 223 TSDKSFVAQI-EHTVIV 238
Score = 31.3 bits (69), Expect = 0.32
Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 3/119 (2%)
Query: 636 TCVKLSIQGSYFCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQ 695
V G Y + + G + + A A+ +KPG +
Sbjct: 92 IDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVH 151
Query: 696 GKPLFMTNPSETHYHHITRATLLSLHLSSHDVIVLFG---VMKPGHSFTIEPMISQGKP 751
+ L + ++ G IEP IS
Sbjct: 152 NTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNAS 210
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 87.8 bits (216), Expect = 7e-20
Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 24/215 (11%)
Query: 210 KEGLRVACKVIRFSFWMNGKLFSPLTKWSLLLGLGTTVVDVTVFHRGYHGDLNETF-LLG 268
+ G R NG + + ++D ++GY GD+ TF + G
Sbjct: 45 RHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNG 104
Query: 269 EVSEHAKKLVQVTWECLDKAIKIVKPG---------------EKYREIGNVIQRHAQAHG 313
+ ++ +++ + E L+ ++++ +PG ++G + +
Sbjct: 105 KFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIA 164
Query: 314 YSVVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKW 373
+ R + HG+ +++PG T+ P +
Sbjct: 165 QNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVAPGLY--------IAPDA 216
Query: 374 TAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTP 408
+ + E +++T+TG E LTA P
Sbjct: 217 EVPEQYRGIGIRIEDDIVITETGNENLTASVVKKP 251
Score = 47.7 bits (112), Expect = 2e-06
Identities = 25/214 (11%), Positives = 52/214 (24%), Gaps = 9/214 (4%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHT 331
++ ++T +A++ +PG + I HG G
Sbjct: 6 AVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSG----- 60
Query: 332 APSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLL 391
+ + + + ++ T AQ E +
Sbjct: 61 ----ENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 116
Query: 392 VTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYCGHGI 451
V ++ L P T + + L I R + HG+
Sbjct: 117 VLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGL 176
Query: 452 HRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
+++PG T+ P +
Sbjct: 177 SHWLGLDVHDVGVYGQDRSRILEPGMVLTVAPGL 210
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/162 (14%), Positives = 42/162 (25%), Gaps = 12/162 (7%)
Query: 544 CYPSPLNYYEFPRSCCTSVNEVICHGIP--DLRPLANGDICNGKHQCFMLPRHVKSRSEE 601
YPS + C + DL + G G V + +
Sbjct: 49 RYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 108
Query: 602 KQVEPPPAELISMEFSSRVCETPGCNQVAKLQC----------PTCVKLSIQGSYFCSQV 651
Q E L S+E S R+ + +K + +
Sbjct: 109 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 168
Query: 652 RSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
R + HG+ +++PG T+ P +
Sbjct: 169 RPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVAPGL 210
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 83.9 bits (206), Expect = 7e-19
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 247 VVDVTVFHRGYHGDLNETFLLGEVSEHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQ 306
V+D+ + Y+ D+ T ++G +E +++ ++ E +A++ KPG +E+ ++ +
Sbjct: 83 VIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAR 142
Query: 307 RHAQAHGYS-VVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWR 365
+ +GY GHG+ H P I Y + V+K G TIEP I
Sbjct: 143 EIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQYDET----VLKEGMVITIEPGI------ 192
Query: 366 DELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
I L + E T+L+T+ G + LT
Sbjct: 193 -----------YIPKLGGVRIEDTVLITENGAKRLT 217
Score = 39.2 bits (90), Expect = 8e-04
Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 28/214 (13%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHT 331
E +K ++ + + AI+ + G++ RE+ ++ + +G
Sbjct: 7 EIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSAL 66
Query: 332 APSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLL 391
+ + + ++ +I G+ + D + + Q E +
Sbjct: 67 PHGVASDKRIERGDLV----------VIDLGALYNHYNSDITRTIVVGSPNEKQREIYEI 116
Query: 392 VTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYCGHGI 451
V + + A P + ++ K + Y H +
Sbjct: 117 VLEAQKRAVEAAKPGMTAKELDSIAREIIKE------------------YGYGDYFIHSL 158
Query: 452 HRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
V+K G TIEP I
Sbjct: 159 GHGVGLEIHEWPRISQYDETVLKEGMVITIEPGI 192
Score = 35.3 bits (80), Expect = 0.016
Identities = 20/157 (12%), Positives = 37/157 (23%), Gaps = 1/157 (0%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVK 596
A VE + F + + HG+ + + GD+ + +
Sbjct: 37 AAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVI-DLGALYNHYNS 95
Query: 597 SRSEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCG 656
+ V P + + + + + Y
Sbjct: 96 DITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFI 155
Query: 657 HGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
H + V+K G TIEP I
Sbjct: 156 HSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGI 192
Score = 34.2 bits (77), Expect = 0.044
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 1/105 (0%)
Query: 642 IQGSYFCSQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGKPLFM 701
+ Y R+ + I A+ +AV KPG + E + +
Sbjct: 89 LYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAK-ELDSIAREIIKE 147
Query: 702 TNPSETHYHHITRATLLSLHLSSHDVIVLFGVMKPGHSFTIEPMI 746
+ H + L +H V+K G TIEP I
Sbjct: 148 YGYGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGI 192
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 72.4 bits (176), Expect = 6e-15
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Query: 276 KLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHTAPS- 334
+L++ E L+ AI + + G + +E+G I+ + G+ + + GH I R A
Sbjct: 106 ELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGIS 165
Query: 335 IPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTD 394
IP+ + V+K G F IEP + G+ + AQFEHT++V
Sbjct: 166 IPNIYRPHDNYVLKEGDVFAIEPFATIGAR---------------NGIVAQFEHTIIVEK 210
Query: 395 TGCEILT 401
+ T
Sbjct: 211 DSVIVTT 217
Score = 43.5 bits (101), Expect = 3e-05
Identities = 39/218 (17%), Positives = 63/218 (28%), Gaps = 27/218 (12%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHT 331
E K ++ + +KAIK+ +PG E+ I++ G
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEI---A 60
Query: 332 APSIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLL 391
A P+ V+K G I+ + + + TAVT+ +
Sbjct: 61 AHYTPYKGDTT---VLKEGDYLKIDVGVHIDGFIAD------TAVTVRVGMEEDELMEAA 111
Query: 392 VTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYCGHGI 451
I AR L + + + K V
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEIRKR---------------GFKPIVNLSGHKIE 156
Query: 452 HRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGK 489
H SIP+ + V+K G F IEP + G
Sbjct: 157 RYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGA 194
Score = 40.1 bits (92), Expect = 5e-04
Identities = 21/161 (13%), Positives = 40/161 (24%)
Query: 537 QACVERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVK 596
+E+ + D L GD +
Sbjct: 34 AESIEKMIMELGGKPAFPVNLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIAD 93
Query: 597 SRSEEKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCG 656
+ + + + + + + V + ++ I+ F V
Sbjct: 94 TAVTVRVGMEEDELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGH 153
Query: 657 HGIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMISQGK 697
H SIP+ + V+K G F IEP + G
Sbjct: 154 KIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGA 194
Score = 30.4 bits (67), Expect = 0.64
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 731 FGVMKPGHSFTIEPMISQGK 750
V+K G F IEP + G
Sbjct: 175 NYVLKEGDVFAIEPFATIGA 194
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 55.5 bits (132), Expect = 5e-09
Identities = 24/133 (18%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 282 WECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHTAPSIPHYAKN 341
E K IK N I Y G + +
Sbjct: 129 HEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLS-HYYGREAGLELRE 187
Query: 342 KAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILT 401
V++PG ++EPMI P+ + L+V + G E +T
Sbjct: 188 DIDTVLEPGMVVSMEPMIM--------LPEGLPGAG-----GYREHDILIVNENGAENIT 234
Query: 402 ARNPPTPYFLDQN 414
PY ++N
Sbjct: 235 K----FPYGPEKN 243
Score = 49.3 bits (116), Expect = 6e-07
Identities = 18/157 (11%), Positives = 39/157 (24%), Gaps = 4/157 (2%)
Query: 541 ERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLANGDICNGKHQCFMLPRHVKSRSE 600
+ + + +N H R + GDI + + +
Sbjct: 49 AIADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERT 108
Query: 601 EKQVEPPPAELISMEFSSRVCETPGCNQVAKLQCPTCVKLSIQGSYFCSQVRSYCGHGIH 660
L + + V E +C + + ++ H
Sbjct: 109 LFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGH 168
Query: 661 RL----FHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 693
+ + V++PG ++EPMI
Sbjct: 169 SFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMI 205
Score = 46.6 bits (109), Expect = 5e-06
Identities = 18/216 (8%), Positives = 41/216 (18%), Gaps = 21/216 (9%)
Query: 272 EHAKKLVQVTWECLDKAIKIVKPGEKYREIGNVIQRHAQAHGYSVVRSYCGHGIHRLFHT 331
+ ++ ++ + E+ + F +
Sbjct: 9 VMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQS 68
Query: 332 AP--SIPHYAKNKAVGVMKPGHSFTIEPMISQGSWRDELWPDKWTAVTIDGLLSAQFEHT 389
H + G ++ + L + D L +
Sbjct: 69 GINTDGAHNPVTT--RKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVN- 125
Query: 390 LLVTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPILLQIPLLAKAPKNCLFQVRSYCGH 449
+ L P + K
Sbjct: 126 ---VEVHEAGLKLIKPGARCSDIARELNEIF------------LKHDVLQYRTFGYGHSF 170
Query: 450 GIHRLFHTAPSIPHYAKNKAVGVMKPGHSFTIEPMI 485
G + + V++PG ++EPMI
Sbjct: 171 GTLS-HYYGREAGLELREDIDTVLEPGMVVSMEPMI 205
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 35.1 bits (79), Expect = 0.019
Identities = 26/225 (11%), Positives = 47/225 (20%), Gaps = 14/225 (6%)
Query: 366 DELWPDKWTAVTIDGLLSAQFEHTLLVTDTGCEILTARNPPTPYFLDQNAKKKTTKIRPI 425
D+LW K+ + + + L K + R
Sbjct: 1 DKLWTVKYAPTNLQQVCGNK-----GSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAA 55
Query: 426 LLQIP------LLAKAPKNCLFQVRSYCGHGIHRLFHTAPSIPHYAKNKAVGVMKPGHSF 479
+L P A L R + A + V H+
Sbjct: 56 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 115
Query: 480 TIEPMISQGKPLFMTNPSETHYHHVTSLHTVKSPLLTVPSIKPLCNNNNNCLIPFSPQAC 539
+ + + + M + + + L N N
Sbjct: 116 EAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRV 175
Query: 540 VERECYPSPLNYYEFPRSCCTSVNEVICHGIPDLRPLA---NGDI 581
+ P R ++ E + L GDI
Sbjct: 176 CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDI 220
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 26.7 bits (58), Expect = 9.7
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 722 LSSHDVIV----LFGVMKPGHSFTIEPMIS 747
++SHDV+ +F + GH+ T++PM +
Sbjct: 15 MTSHDVVGRCRRIFATRRVGHAGTLDPMAT 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.444
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,000,186
Number of extensions: 146713
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 45
Length of query: 769
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 677
Effective length of database: 1,144,436
Effective search space: 774783172
Effective search space used: 774783172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)