BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11714
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 237 TPDITPLILAAHMNNYEILKILLDRGATLPMPHDV 271
T TPL +A H N+ EI K L+DRGA + + + +
Sbjct: 37 TEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 239 DITPLILAAHMNNYEILKILLDRGATLPMPHD 270
+TPL +A H NN +I+K+LL RG + PH
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGS---PHS 207
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 19/88 (21%)
Query: 195 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI-------------- 240
L+ A++ E V+ V+ LLE ++ + W + + DI
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 241 -----TPLILAAHMNNYEILKILLDRGA 263
TP ILAA + ++LK+ L +GA
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGA 116
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
AL A Y + V +LLE + I++ Y W TPL+ A H N+ +
Sbjct: 72 ALSLASTGGYTDIVGLLLERDVDINI----YDWNGG-----------TPLLYAVHGNHVK 116
Query: 254 ILKILLDRGATLPMPHD 270
++ LL RGA L D
Sbjct: 117 CVEALLARGADLTTEAD 133
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 19/88 (21%)
Query: 195 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI-------------- 240
L+ A++ E V+ V+ LLE ++ + W + + DI
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 241 -----TPLILAAHMNNYEILKILLDRGA 263
TP +LAA + ++LK+ L +GA
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGA 96
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 228 AVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
D ++ FT TPL LAAH + EI+++LL GA
Sbjct: 37 GADVNARDFTG-WTPLHLAAHFGHLEIVEVLLKNGA 71
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 237 TPDITPLILAAHMNNYEILKILLDRGATLPMPHD 270
T TPL LAAH + EI+++LL GA + D
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDD 111
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 198 AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKI 257
A ++E VE+LL+ D ++S T ITPL LAA + EI+++
Sbjct: 54 AASNGHLEIVEVLLK--------------NGADVNASDLTG-ITPLHLAAATGHLEIVEV 98
Query: 258 LLDRGA 263
LL GA
Sbjct: 99 LLKHGA 104
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 15/61 (24%)
Query: 203 YVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG 262
++E VE+LL++ ++ A D + ITPL LAA+ + EI+++LL G
Sbjct: 80 HLEIVEVLLKYGADVN---------AKDATG------ITPLYLAAYWGHLEIVEVLLKHG 124
Query: 263 A 263
A
Sbjct: 125 A 125
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 192 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN 251
+ AL A + Y + V++LL+ ++ Y W TPL+ A H N+
Sbjct: 86 ESALSLACSKGYTDIVKMLLDCGVDVN----EYDWNGG-----------TPLLYAVHGNH 130
Query: 252 YEILKILLDRGA 263
+ +K+LL+ GA
Sbjct: 131 VKCVKMLLESGA 142
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 192 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN 251
+ AL A + Y + V++LL+ ++ Y W TPL+ A H N+
Sbjct: 68 ESALSLACSKGYTDIVKMLLDCGVDVN----EYDWNGG-----------TPLLYAVHGNH 112
Query: 252 YEILKILLDRGA 263
+ +K+LL+ GA
Sbjct: 113 VKCVKMLLESGA 124
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 192 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN 251
+ AL A + Y + V++LL+ ++ Y W TPL+ A H N+
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVN----EYDWNGG-----------TPLLYAVHGNH 114
Query: 252 YEILKILLDRGA 263
+ +K+LL+ GA
Sbjct: 115 VKCVKMLLESGA 126
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 15/62 (24%)
Query: 202 EYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR 261
+++E VE+LL+ ++ H S TPL LAA + EI+++LL
Sbjct: 58 DHLEIVEVLLKHGADVNAHDNDGS---------------TPLHLAALFGHLEIVEVLLKH 102
Query: 262 GA 263
GA
Sbjct: 103 GA 104
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 241 TPLILAAHMNNYEILKILLD 260
TPL LAA +YE K+LLD
Sbjct: 192 TPLFLAAREGSYETAKVLLD 211
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 241 TPLILAAHMNNYEILKILLD 260
TPL LAA +YE K+LLD
Sbjct: 193 TPLFLAAREGSYETAKVLLD 212
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 241 TPLILAAHMNNYEILKILLD 260
TPL LAA +YE K+LLD
Sbjct: 192 TPLFLAAREGSYETAKVLLD 211
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 241 TPLILAAHMNNYEILKILLD 260
TPL LAA +YE K+LLD
Sbjct: 160 TPLFLAAREGSYETAKVLLD 179
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 241 TPLILAAHMNNYEILKILLD 260
TPL LAA +YE K+LLD
Sbjct: 157 TPLFLAAREGSYETAKVLLD 176
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
Query: 198 AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKI 257
A K ++E VE+LL++ ++ A D ST PL LAA + EI+++
Sbjct: 87 AAKRGHLEIVEVLLKYGADVN---------ADDTIGST------PLHLAADTGHLEIVEV 131
Query: 258 LLDRGA 263
LL GA
Sbjct: 132 LLKYGA 137
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
Query: 198 AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKI 257
A K ++E VE+LL+ ++ SW TPL LAA + + EI+++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNA---SDSWGR------------TPLHLAATVGHLEIVEV 98
Query: 258 LLDRGA 263
LL+ GA
Sbjct: 99 LLEYGA 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,112,004
Number of Sequences: 62578
Number of extensions: 239871
Number of successful extensions: 672
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 62
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)