RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11714
(272 letters)
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 138 bits (349), Expect = 6e-37
Identities = 70/162 (43%), Positives = 90/162 (55%), Gaps = 11/162 (6%)
Query: 108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRS 167
+ V A E L EEK + P +++ L+E P+ NINC D L RS
Sbjct: 2 GPLDIVPAEESPLSDEEKAFL---PAAERGDLASVYRDLEE----PKKLNINCPDRLGRS 54
Query: 168 SLI-AAIENENIELINILLEYN--IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 224
+L AAIENEN+EL +LL + V D LLHAI EYV+AVE +L P
Sbjct: 55 ALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPL 114
Query: 225 SWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP 266
A D+ +S FTP IT L LAAH NYEI+K+LL+RGA++P
Sbjct: 115 -ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP 155
Score = 114 bits (287), Expect = 1e-28
Identities = 60/179 (33%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 19 RQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSL 78
R + E L+ +EK FL AERGD A+V + L+E P+ NINC D L RS+L
Sbjct: 1 RGPLDIVPAEESPLSDEEKAFLPAAERGDLASVYRDLEE----PKKLNINCPDRLGRSAL 56
Query: 79 I-AAIENENIELINILLEYN--IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVS 135
AAIENEN+EL +LL + V D LLHAI EYV+AVE +L P
Sbjct: 57 FVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPL-- 114
Query: 136 ENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE--YNIQVK 192
+ D+ + ++L A +N E++ +LLE ++ +
Sbjct: 115 -------ELANDQYTSEFTP---------GITALHLAAHRQNYEIVKLLLERGASVPAR 157
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 53.4 bits (129), Expect = 1e-09
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 169 LIAAIENENIELINILLEYNIQV-----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
L A +N N+EL+ +LLE V AL A + +E V++LLE ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN----- 55
Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ T L LAA N EI+K+LL+ GA
Sbjct: 56 ----------AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85
Score = 48.4 bits (116), Expect = 1e-07
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 37/119 (31%)
Query: 78 LIAAIENENIELINILLEYNIQV-----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQP 132
L A +N N+EL+ +LLE V AL A + +E V++LLE
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHG--------- 51
Query: 133 YVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV 191
++N D ++L A N N+E++ +LLE+ +
Sbjct: 52 -----------------------ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87
Score = 43.0 bits (102), Expect = 1e-05
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI 98
L A+ G+ V+ +L++ D +N D ++L A N N+E++ +LLE+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGAD------VNLGD--TDTALHLAARNGNLEIVKLLLEHGA 52
Query: 99 QVKD-------ALLHAIKEEYVEAVEILLEWEEKIHV 128
V AL A + +E V++LLE I++
Sbjct: 53 DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89
Score = 40.3 bits (95), Expect = 8e-05
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 41/123 (33%)
Query: 104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDP 163
L A K +E V++LLE + N G T
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADV----------NLGDT---------------------- 28
Query: 164 LNRSSLIAAIENENIELINILLEYNIQVKD-------ALLHAIKEEYVEAVEILLEWEEK 216
++L A N N+E++ +LLE+ V AL A + +E V++LLE
Sbjct: 29 --DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86
Query: 217 IHV 219
I++
Sbjct: 87 INL 89
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 50.5 bits (121), Expect = 4e-08
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 22/112 (19%)
Query: 159 NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 211
N D R+ L A N ++E++ +LLE ++ KD L A K ++E V++LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 212 EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
E G A D+ TPL LAA N +++K+LL GA
Sbjct: 61 E-------KG--ADVNARDKD------GNTPLHLAARNGNLDVVKLLLKHGA 97
Score = 48.9 bits (117), Expect = 1e-07
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 46/158 (29%)
Query: 68 NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 120
N D R+ L A N ++E++ +LLE ++ KD L A K ++E V++LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL 180
E G ++N D + L A N N+++
Sbjct: 61 E-------KGA-------------------------DVNARDKDGNTPLHLAARNGNLDV 88
Query: 181 INILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 211
+ +LL++ ++ +D L A K ++E V++LL
Sbjct: 89 VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 45.1 bits (107), Expect = 3e-06
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
++N D R+ L A +N ++E++ +LLE ++ +D L A + ++ V++
Sbjct: 32 DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKL 91
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILL 259
LL+ + A D+ TPL LAA + E++K+LL
Sbjct: 92 LLKHGADV---------NARDKD------GRTPLHLAAKNGHLEVVKLLL 126
Score = 40.1 bits (94), Expect = 2e-04
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 45/154 (29%)
Query: 39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-- 96
L A G V+ +L+ D +N D R+ L A +N ++E++ +LLE
Sbjct: 11 LHLAASNGHLEVVKLLLENGAD------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64
Query: 97 NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKD 151
++ +D L A + ++ V++LL+ HG
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLLLK-------HG--------------------- 96
Query: 152 QPEVFNINCVDPLNRSSLIAAIENENIELINILL 185
++N D R+ L A +N ++E++ +LL
Sbjct: 97 ----ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 36.4 bits (85), Expect = 5e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
TPL LAA + E++K+LL+ GA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA 26
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 31.8 bits (73), Expect = 0.020
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 241 TPLILAAHMNNYEILKILLDRGATL 265
TPL LAA N E++K+LLD+GA +
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADI 28
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 31.8 bits (73), Expect = 0.038
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
AL A +E V+ LLE + + ++ T L +AA N E
Sbjct: 4 ALHKAAISGRLELVKYLLE--KGVDINRTDEDGN-------------TALHIAAENGNLE 48
Query: 254 ILKILL 259
+LK+LL
Sbjct: 49 VLKLLL 54
Score = 26.4 bits (59), Expect = 2.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILL 94
+IN D ++L A EN N+E++ +LL
Sbjct: 26 DINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 26.4 bits (59), Expect = 2.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILL 185
+IN D ++L A EN N+E++ +LL
Sbjct: 26 DINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 26.4 bits (59), Expect = 3.3
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 74 NRSSLIAAIENENIELINILLEYNIQVKD-------ALLHAIKEEYVEAVEILL 120
R++L A + +EL+ LLE + + AL A + +E +++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 26.4 bits (59), Expect = 3.3
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 165 NRSSLIAAIENENIELINILLEYNIQVKD-------ALLHAIKEEYVEAVEILL 211
R++L A + +EL+ LLE + + AL A + +E +++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 30.7 bits (70), Expect = 0.045
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 241 TPLILAAHMNNYEILKILLDRGATL 265
TPL LAA N E++K+LL+ GA +
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADI 28
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 34.2 bits (78), Expect = 0.071
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 167 SSLIAAIENENIELINILLEYNI-------QVKDALLHAIKEEYVEAVEILLEWEEKIHV 219
S + A++ + E I +L+++ ++ L A++E V+AVE LL+
Sbjct: 37 SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD------- 89
Query: 220 HGQPYSWEAVDRSSSTFTPDI------TPLILAAHMNNYEILKILLDRGATLPMP 268
F D+ TPL LA + +I+K+L+ RGA +P
Sbjct: 90 -------------LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131
Score = 30.0 bits (67), Expect = 1.3
Identities = 40/209 (19%), Positives = 88/209 (42%), Gaps = 40/209 (19%)
Query: 76 SSLIAAIENENIELINILLEYNI-------QVKDALLHAIKEEYVEAVEILLEW----EE 124
S + A++ + E I +L+++ ++ L A++E V+AVE LL+ ++
Sbjct: 37 SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96
Query: 125 KIHVHGQ-PYVSENKGRTIFMM--LDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI 181
+ G P + + +M L P++ N + PL+ A+ +I+ I
Sbjct: 97 VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLH-----LAVMMGDIKGI 151
Query: 182 NILLEYN--IQVKDA-----LLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSS 234
+L+++ + ++D L+ A+ + + ++LL+ I G+
Sbjct: 152 ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGK------------ 199
Query: 235 TFTPDITPLILAAHMNNYEILKILLDRGA 263
+ L A N +I+++ + RGA
Sbjct: 200 --NGCVAALCYAIENNKIDIVRLFIKRGA 226
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 32.3 bits (74), Expect = 0.27
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 37/221 (16%)
Query: 71 DPLNRSSLIAAIENENIELINILLEYNIQVKDALLH-AIKEEYVEAVEILLEWEEKIHVH 129
L +S +I + I + + L +Y+ + L+ A + ++ V+ILL+ +
Sbjct: 5 IVLTKSRIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLD-------N 57
Query: 130 GQPYVSENKGRTIFMMLDE-----LKDQPEVF--------NINCVDPLNRSSLIAAIEN- 175
G S K + + L D E+ N+N D + L+ AI
Sbjct: 58 GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKK 117
Query: 176 -ENIELINILLEY--NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR- 231
+ ++ LL+ N+ +K++ + Y+E+ +I L+ + + G A +R
Sbjct: 118 SNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG--VDINAKNRV 175
Query: 232 ------SSSTFTPDI---TPLILAAHMNNYEILKILLDRGA 263
D+ TPL A + NN E +K LLD GA
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216
Score = 27.3 bits (61), Expect = 8.4
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 162 DPLNRSSLIAAIENENIELINILLEYNIQVKDALLH-AIKEEYVEAVEILLEWEEKIHVH 220
L +S +I + I + + L +Y+ + L+ A + ++ V+ILL+ ++
Sbjct: 5 IVLTKSRIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLD--NGADIN 62
Query: 221 GQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD 270
+++ST I + EI+K+LL+ GA + P +
Sbjct: 63 S-------STKNNSTPLH-YLSNIKYNLTDVKEIVKLLLEYGANVNAPDN 104
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 32.2 bits (73), Expect = 0.29
Identities = 45/204 (22%), Positives = 93/204 (45%), Gaps = 38/204 (18%)
Query: 76 SSLIAAIENENIELINILLEY-------NIQVKDALLHAIKEEYVEAVEILLEWEEKIHV 128
+ LI AI + + +++ + +++ N ++ LL AIK + +++L++ +
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI 96
Query: 129 HGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY- 187
P + ++ +TI LD D +N D ++ L AI+ ++E I +L EY
Sbjct: 97 LPIPCIEKDMIKTI---LDCGID------VNIKDAELKTFLHYAIKKGDLESIKMLFEYG 147
Query: 188 -NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDIT 241
++ ++D + AIK + + +++LLE +V + E +
Sbjct: 148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD--NNGE-------------S 192
Query: 242 PLILAAHMNNYEILKILLDRGATL 265
PL AA +Y +K+L+D G +
Sbjct: 193 PLHNAAEYGDYACIKLLIDHGNHI 216
>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated.
Length = 287
Score = 30.8 bits (70), Expect = 0.62
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 245 LAAHMNNYEILKILLDRGATLPMPH 269
L A + E+LKILL RG P
Sbjct: 224 LCAGVVATEVLKILLGRGRVYAAPW 248
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 31.0 bits (70), Expect = 0.65
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVK 101
+IN + L + L A ENE+ + N +L
Sbjct: 283 DINIITELGNTCLFTAFENESKFIFNSILNKKPNKN 318
Score = 31.0 bits (70), Expect = 0.65
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVK 192
+IN + L + L A ENE+ + N +L
Sbjct: 283 DINIITELGNTCLFTAFENESKFIFNSILNKKPNKN 318
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 31.0 bits (70), Expect = 0.72
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 23/106 (21%)
Query: 166 RSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIH 218
++L A EN++ L +LL Y V L HA+K V ILLE
Sbjct: 169 NTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST- 227
Query: 219 VHGQPYSWEAVDRSSSTFTPDITPL-ILAAHMNNYEILKILLDRGA 263
D TPL I + +Y+ILK+LL+ G
Sbjct: 228 -----------DARDKCGN---TPLHISVGYCKDYDILKLLLEHGV 259
>gnl|CDD|163616 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase
domain. Mre11 (also known as SbcD in Escherichia coli)
is a subunit of the MRX protein complex. This complex
includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital
role in several nuclear processes including DNA
double-strand break repair, telomere length maintenance,
cell cycle checkpoint control, and meiotic
recombination, in eukaryotes. During double-strand
break repair, the MRX complex is required to hold the
two ends of a broken chromosome together. In vitro
studies show that Mre11 has 3'-5' exonuclease activity
on dsDNA templates and endonuclease activity on dsDNA
and ssDNA templates. In addition to the N-terminal
phosphatase domain, the eukaryotic MRE11 members of this
family have a C-terminal DNA binding domain (not
included in this alignment model). MRE11-like proteins
are found in prokaryotes and archaea was well as in
eukaryotes. Mre11 belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 103 ALLHAIKEEYVEAVEILLEWE-EKIHVHGQPYVSENKGRTIF--MMLDELKDQPEVFNI 158
+ LH + E +LL + ++G PY+ ++ R + L P+ FNI
Sbjct: 102 SGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSRLRDLLADAELRPRPLDPDDFNI 160
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 26.9 bits (60), Expect = 1.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
TPL LAA E+++ LL G
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGV 40
>gnl|CDD|233960 TIGR02642, phage_xxxx, uncharacterized phage protein. This
uncharacterized protein is found in prophage regions of
Shewanella oneidensis MR-1, Vibrio vulnificus YJ016,
Yersinia pseudotuberculosis IP 32953, and Aeromonas
hydrophila ATCC7966. It appears to have regions of
sequence similarity to phage lambda antitermination
protein Q [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 186
Score = 28.7 bits (64), Expect = 2.4
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 6 SKEELLGSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEV 64
+KE+LLG++ R + P+ +A L+ D ++K+ + +Q
Sbjct: 32 TKEQLLGAIALAQRDN-----PIGIA-------ILMAKYMRDAYAIQKLYAHICEQLLP 78
>gnl|CDD|232930 TIGR00342, TIGR00342, tRNA sulfurtransferase ThiI. Members of this
protein family are "ThiI", a sulfurtransferase involved
in 4-thiouridine modification of tRNA. This protein
often is bifunctional, with genetically separable
activities, where the C-terminal rhodanese-like domain
(residues 385 to 482 in E. coli ThiI), a domain not
included in this model, is sufficient to synthesize the
thiazole moiety of thiamine (see TIGR04271). Note that
ThiI, because of its role in tRNA modification, may
occur in species (such as Mycoplasma genitalium) that
lack de novo thiamine biosynthesis [Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine,
Protein synthesis, tRNA and rRNA base modification].
Length = 371
Score = 28.9 bits (65), Expect = 2.7
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 20/149 (13%)
Query: 74 NRSSLIAAIENENIELI----NILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVH 129
NR I +NI+ IL ++ AI +E +A+ LL I
Sbjct: 14 NRLRFEK-ILKKNIKKALKKYEILRAVVYHFDRIVVIAIDKEQRDALLDLLTKIPGIVSF 72
Query: 130 GQPYVSENKGRTIFMMLDELKDQPEVFNINCVD--------PLNRSSL---IAAIENENI 178
+ + I ++L LK + V PLN + + E I
Sbjct: 73 SPAFKCDLPFDEIHILLKALKQLRKEGKTFKVRTKRRGKDFPLNSVEVNKYVGGGIVEKI 132
Query: 179 E----LINILLEYNIQVKDALLHAIKEEY 203
L N + +I++++ I E Y
Sbjct: 133 GLKVDLTNPDITVHIEIREDEFLIITERY 161
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 28.6 bits (64), Expect = 3.2
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 72 PLNRSSLIAAIENENIELINILLEYN----IQVKDALLH 106
P + S + + E ++L+ +L Y+ I K AL H
Sbjct: 253 PQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTH 291
Score = 28.6 bits (64), Expect = 3.2
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 163 PLNRSSLIAAIENENIELINILLEYN----IQVKDALLH 197
P + S + + E ++L+ +L Y+ I K AL H
Sbjct: 253 PQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTH 291
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.
Length = 790
Score = 28.7 bits (65), Expect = 3.5
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 26/140 (18%)
Query: 82 IENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRT 141
+E ++ +LI+I+ I + D L A+ EEY+ +L EW +
Sbjct: 620 LEEDDRDLIDIV----ILMIDVYLEAVAEEYLLEKSLLEEWIYEN--------------- 660
Query: 142 IFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL---LEYNIQVKDALLHA 198
+ +L + N L+ E + E N L YN ++ L A
Sbjct: 661 ---LSFQLNEILSNTNFP-DKKEVVQFLLEEAEKQLKEKRNKLPSATLYNQFLRKVALKA 716
Query: 199 IKEEYVEAVEILLEWEEKIH 218
I + +VE V+ L + +E I
Sbjct: 717 IDQNWVEQVDALQQLKEGIG 736
>gnl|CDD|99992 cd03822, GT1_ecORF704_like, This family is most closely related to
the GT1 family of glycosyltransferases. ORF704 in E.
coli has been shown to be involved in the biosynthesis
of O-specific mannose homopolysaccharides.
Length = 366
Score = 28.4 bits (64), Expect = 3.7
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 61 QPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAI 108
Q V I +PL+ AI +++ I EY I +A L+ +
Sbjct: 51 QEVVRVIVLDNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLL 98
Score = 28.4 bits (64), Expect = 3.7
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 152 QPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAI 199
Q V I +PL+ AI +++ I EY I +A L+ +
Sbjct: 51 QEVVRVIVLDNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLL 98
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 28.4 bits (64), Expect = 4.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 252 YEILKILLDRGATLP 266
Y +L ILL RG TLP
Sbjct: 214 YVVLSILLIRGLTLP 228
>gnl|CDD|220865 pfam10728, DUF2520, Domain of unknown function (DUF2520). This
presumed domain is found C-terminal to a Rossmann-like
domain suggesting that these proteins are
oxidoreductases.
Length = 131
Score = 27.2 bits (61), Expect = 5.0
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 10 LLGSVHNIARQDYCVDAPVEVALT-PQEKRFLLVAERGDCATVRKMLDELKDQPE 63
+ G++ NI ALT P RGD TV K L+ L D PE
Sbjct: 78 IRGTLDNILELG------PVAALTGP--------VARGDAGTVEKHLEALADLPE 118
>gnl|CDD|218777 pfam05847, Baculo_LEF-3, Nucleopolyhedrovirus late expression
factor 3 (LEF-3). This family consists of LEF-3
Nucleopolyhedrovirus late expression factor 3 (LEF-3)
sequences which are known to be ssDNA-binding proteins.
Alkaline nuclease (AN) and LEF-3 may participate in
homologous recombination of the baculovirus genome in a
manner similar to that of exonuclease (Redalpha) and
DNA-binding protein (Redbeta) of the Red-mediated
homologous recombination system of bacteriophage lambda.
LEF-3 is essential for transporting the putative
baculovirus helicase protein P143 into the nucleus where
they function together during viral DNA replication.
LEF-3 and other proteins have been shown to bind to
closely linked sites on viral chromatin in vivo,
suggesting that they may form part of the baculovirus
replisome.
Length = 348
Score = 28.0 bits (63), Expect = 6.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 64 VFNINCVDPLNRSS------------LIAAIENENIELINILLEYNIQVKDAL--LHAIK 109
VF IN D S L AI+N++IE N LLE+ + +D L L+ +K
Sbjct: 134 VFVINYGDEGGTVSVVQVECFANLKRLANAIKNKSIENENDLLEFFHKNQDKLFNLYRVK 193
Score = 28.0 bits (63), Expect = 6.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 155 VFNINCVDPLNRSS------------LIAAIENENIELINILLEYNIQVKDAL--LHAIK 200
VF IN D S L AI+N++IE N LLE+ + +D L L+ +K
Sbjct: 134 VFVINYGDEGGTVSVVQVECFANLKRLANAIKNKSIENENDLLEFFHKNQDKLFNLYRVK 193
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.389
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,467,101
Number of extensions: 1449836
Number of successful extensions: 1821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1767
Number of HSP's successfully gapped: 112
Length of query: 272
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 177
Effective length of database: 6,723,972
Effective search space: 1190143044
Effective search space used: 1190143044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)